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Plant DNA digests

Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

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Page 1: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Plant DNA digests

Page 2: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Plasmid DNA digests Plasmid DNA digests

Plant DNA digests CSS451 Plant DNA digests

Page 3: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Plant Plasmid

CSS451 digests

Page 4: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Plant Plasmid

Page 5: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Southern AnalysisOptimizing DNA digest concentrations

2 4 8 12 16 20 24 ug

Page 6: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Estimating Yield of Dig-labeled Probe

1:5 1:50 1:500 1:5000 1:50,000

Page 7: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24
Page 8: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Plasmid DNA Southern Analysis

Bt-cry52244 bp

Page 9: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24
Page 10: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

2.0kb1.9kb

21kb

5.1kb4.9kb

A

B

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16

M NT LM L235 C3 80-1

Southern Analysis

Copynumber

Integration

Page 11: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

NT LM L23 C3 80-11 2 4 5 6 7 8 9 10 11 12 13 14 15

4.0kb

3

Northern Analysis

Page 12: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Southern Analysis

Non-specificBinding of probebecause wrong buffer was used.

Non-bindingOf Probebecause of poorHybridization.

Image of Whole membrane

Dig-labeled size marker

Page 13: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Southern Analysis:Light-exposed film

Page 14: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Southern Analysis:Light-exposed film

Page 15: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24
Page 16: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

cryV-BtPVYcp

RAPD Analysis of Bt-cry5/PVYcp transgenic potatoes

Page 17: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

1 2 3 4 5 6 7 8

1.2kb

2.2kb A

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Southern Analysis of Bt-cry5/PVYcp transgenic potatoes:Integration

Page 18: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

1 2 3 4 5 6 7 8

3.5kb

4.2kb

4.9kb5.1kb

Southern Analysis of Bt-cry5/PVYcp transgenic potatoes:Copy Number

Page 19: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

1.2kb

2.2kb A

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Northern Analysis of Bt-cry5/PVYcp transgenic potatoes:Leaf tissue

Page 20: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

1.2kb

2.2kb A

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Northern Analysis of Bt-cry5/PVYcp transgenic potatoes:Tuber tissue

Page 21: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

125kD

79.6kD

1 2 3 4 5 6 7 8 9 10 11 12 13

CRYV

Western Analysis of Bt-cry5 Potatoes

Page 22: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

1 2 3 4 5 6 7 8 9 10 11 12 13 14 1516

500 bp

456 bp

256 bp

PVY

Cry1a

NPTII

Progeny analysis of crosses between PVYcp and Bt-transgenic potatoes:

PCR results

Page 23: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 1621kb

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PVY

Cry1a

Progeny analysis of crosses between PVYcp and Bt-transgenic potatoes:

Southern Analysis results

Page 24: Plant DNA digests - Michigan State University Plant DNA digests Plant Plasmid CSS451 digests Plant Plasmid Southern Analysis Optimizing DNA digest concentrations 2 4 8 12 16 20 24

Fingerprint Analysis of Potato Varieties