Upload
christopher-sullivan
View
215
Download
0
Embed Size (px)
Citation preview
A. Genetic Engineering
Genetic engineering (AKA recombinant DNA technology) is faster & more reliable method of selecting certain trait in population
• Artificial selection is done by humans breeding specific individuals with certain traits - slow
• Natural selection is nature selecting specific individuals with certain traits – very slow
• Genetic engineering involves cleaving (cutting out) DNA from one organism into small fragments & inserting desired gene into host DNA of same or different species
Desired gene
Host DNA
Also called recombinant DNA technology since DNA gets recombined to make one new one
If plants or animals contain foreign DNA from this technology, are called transgenic organisms or genetically modified organism (GMO)• Example is tobacco plant that contains
glowing gene from firefly – plant glows!!
Example of Transgenic Organisms
Tobacco PlantCaterpillar
Zebra Fish
Firefly Bioluminescence
Making transgenic or GMO takes 3 steps:1. cleave DNA – isolate DNA fragment
2. vector - attach DNA fragment to carrier
3. insertion - insert DNA into host organism
B. Steps of Engineering
1. Cleave DNA
2. Make a vector
3. Insert into host
1. DNA Cleavage Must isolate small parts of DNA (DNA can
contain millions of base pairs• use special enzymes called restriction
enzymes that cut both sides of dsDNA at specific areas of nucleotide sequence
• depending on which way DNA is cut, get 2 different ends: o sticky endo blunt end
o sticky end dsDNA is cut leaving some single strands can only do that if there is a palindrome = letter
order written same way backwards as forwards ex: “mom” backwards is “mom” but with dsDNA, both
sides are included “GAATTC” on top side (forwards) and “CTTAAG” on
bottom side (backwards)
A T C C A G G A A T T C C A A G C T CT A G G T C C T T A A G G T T C G A G
restriction enzyme recognizes specific palindromes and will cut somewhere within there ex: EcoRI recognizes GAATTC & will cut in b/t G – A on both sides leaving sticky ends ready to bond
A T C C A G G A A T T C C A A G C T C
T A G G T C C T T A A G G T T C G A G
A A T T C C A A G C T C
A T C C A G G G G T T C G A G
T A G G T C C T T A A
After Cleaving
TTAA and AATT sticky end have nothing to bond to, so if same restriction enzyme cuts DNA of organism and host’s organism, both sticky ends will match so bonding will be easier
o blunt end DNA is cut all way through like with
scissors
A T C C A G G A C T T C C A A G C T CT A G G T C C T G A A G G T T C G A G
A T C C A G G A C T T C C A A G C T CT A G G T C C T G A A G G T T C G A G
both ends are bonded with other bases so are blunt
After Cleaving
2. Attach to vector Loose fragments of DNA
need to be attached to vector (carrier) first
Two types of vectors:o Biological vector: bacteria
plasmid or viruso Mechanical vector:
micropipette or microscopic metal bullet
Since both DNA and vector were cleaved with same restriction enzyme, both ends will match • Join pieces using DNA ligase
3. Insertion into host Recombined plasmid (or other vector) is
inserted into host’s cell When host replicates, inserted DNA also
replicates producing more of that desired gene• bacterial plasmid can replicate every 20
min!
o Bacterial plasmid Inserts plasmid into
bacteria’s cytoplasm
o Virus Injects DNA directly
into host’s DNA Process called
transduction
Plasmid can replicate 500 times per cell, and each clone replicates 500 times… and so on• Clone: genetically identical copies of
original
Dolly (1996-2003)The first ever
cloned animal
can also replicate DNA segments by using Polymerase Chain Reaction (PCR)
• dsDNA strands are separated (unzipped) by heat
• special heat-resistant enzymes replicate DNA
• important advancement technique used to match DNA with very little DNA to begin withDon’t need much DNA from crime
scenes
C. Uses for Genetic Engineering
recombinant DNA (genetic engineering) is currently useful in many areas of life
1. Industry
2. Medicine
3. Agriculture
a. clothing: bacteria E. coli are transgenic with DNA to make indigo dye indigo dye in nature is VERY
expensive, so can make blue jeans cheaply
b. food: making corn that has high protein content (corn is mostly carbohydrate)
c. fuel: use corn husks to make fuel for cars
d. sewage: clean water using bacteria
1. Industry
a. hormone: can produce human growth hormone (hGH) to treat people with growth disorders (Achondroplasia, Turner syndrome)
b. medicine: produce human insulin (formerly bovine/cow) with bacterial plasmids
c. diseases: transgenic sheep are produced that produce Factor VIII protein for hemophiliacs
d. Vaccines: remove virus’ dangerous genes
2. Medicine
making more/bigger/healthier/fresher food Crops resistant to viruses and insects canola plants make more canola oil peanuts & soybeans that don’t cause
allergic reactions corn that can grow with very little water
(survive drought)
3. Agriculture
D. The Human Genome Project
International effort started in1990, Human Genome Project (HGP) was organized to completely map and sequence human genome• complete sequence of nucleotides
(3.2 billion) in human DNA (completed 2000).
• Complete map of 20,000 genes (2006) on 23 sets of chromosomes
1. How did they find out that genes U-Z are on chromosome set #2 and not on set #8?
2. How do we know gene N is next to M and O and not somewhere else?
ANSWER: Linkage Maps
ABCD
ABCD
UVWXYZ
UVWXYZ
Set# 2LMNOP
Set# 8LMNOP
QRS
QRS
How did they do that?
Linkage map: genetic map that shows relative locations of genes on a chromosome
• Found locations of genes on specific chromosomes, but didn’t know the order
o Gene M is on chromosome 11o Where on chromosome 11 is gene M?
• Can find RELATIVE order of genes from a linkage map
Linkage Map
Using PCR, can make millions of copies of DNA fragments to find patterns in certain geneso Use genetic markers to trace inheritance of
genes, which shows us where that gene is located relative to the others
• Father has genes M & HD
• Mother does not Out of 5 kids, 3
inherited M, and of those 3, 2 also got HD
M & HD are close to each other
Gel Electrophoresis
Process of separating DNA fragments to compare sizes and therefore similarities• Electricity is sent through gel containing DNA fragments• DNA pieces will migrate toward bottom
o Smaller pieces will “run” fastero Larger pieces will be stuck toward top
large
small
sequencing human genome compares DNA fragments to each other• pieces that overlap are pieced together
How did they sequence it?
ABCD NOPQ DEFGHIJ
IJKLMNOP RSTUVWX WXYZ BCD
LMNOPQRS
All these fragments came from cleaving DNA into little workable pieces
ABCDEFGHIJKLMNOPQRSTUVWXYZ
By lining up pieces that overlap, can get entire sequence
Diagnosing genetic disorders – individuals find out if they are carrying gene for specific disease Can be done for fetuses using epithelial cells (from
amniotic fluid) Dilemma – do YOU want to know if you have gene
for cancer or heart disease? Pros: can alter lifestyle NOW to help prevent
cancer or heart disease from coming Cons: always in fear about what may or may
not happen
E. Applications of HGP
Gene therapy – inserting normal genes into human cells to correct genetic disorder Cystic fibrosis, sickle-cell anemia, hemophilia,
AIDS, cancer, heart disease are all being studied as genetic diseases in which gene therapy may work
DNA fingerprinting – compare unknown DNA to known DNA to find out if they match DNA cut by restriction enzymes would show same sizes
each time (same palindrome sequence) Called restriction fragment length polymorphisms
(RFLPs)o Solve crimeso Maternity/paternity