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TABLE S1. Proteins identified by mass spectrometry in the tonsils of the soft palate of swine. Identified Proteins (1650) Accession Number PBS TBS Lysate Actin, gamma 1 OS=Sus scrofa domesticus GN=ACTG1 PE=3 SV=1 A0A0B8RTA2_PIG (+3) 59 104 90 N-myosin-9 OS=Sus scrofa GN=MYH9 PE=2 SV=1 K9IVP5_PIG 8 27 170 Serotransferrin OS=Sus scrofa GN=TF PE=1 SV=2 TRFE_PIG 55 111 41 Vimentin OS=Sus scrofa domesticus GN=VIM PE=3 SV=1 A0A0B8RVD8_PIG (+1) 34 68 91 Filamin A, alpha OS=Sus scrofa domesticus GN=FLNA PE=4 SV=1 A0A0B8RSX6_PIG 10 45 124 Uncharacterized protein OS=Sus scrofa GN=COL6A3 PE=1 SV=1 I3LUR7_PIG 6 50 107 Talin-1 OS=Sus scrofa GN=TLN1 PE=2 SV=1 K9IWI4_PIG 16 81 66 Serum albumin OS=Sus scrofa GN=ALB PE=1 SV=1 F1RUN2_PIG 120 0 0 Uncharacterized protein OS=Sus scrofa GN=LCP1 PE=1 SV=2 F1RK02_PIG 19 79 40 Uncharacterized protein OS=Sus scrofa GN=EEF2 PE=1 SV=1 I3LII3_PIG 23 63 40 Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3 HS90A_PIG 37 63 18 Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1 TBB5_PIG 18 38 67 Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1 FBN1_PIG 0 14 97 Uncharacterized protein OS=Sus scrofa GN=LOC100049693 PE=1 SV=2 F1RR78_PIG 0 34 80 Actinin, alpha 4 OS=Sus scrofa domesticus GN=ACTN4 PE=4 SV=1 A0A0B8S0C5_PIG (+1) 13 58 45 Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4 G3P_PIG 23 61 31 IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B180_PIG 37 51 18 Uncharacterized protein OS=Sus scrofa GN=LOC100524210 PE=1 SV=2 F1S9Q3_PIG 26 43 35 Protein disulfide-isomerase OS=Sus scrofa GN=grp-58 PE=1 SV=1 E1CAJ5_PIG 25 43 39 Elongation factor 1-alpha OS=Sus scrofa GN=EEF1A PE=1 SV=1 Q0PY11_PIG 17 36 43 Myosin-1 OS=Sus scrofa GN=MYH1 PE=4 SV=1 F1SS64_PIG (+1) 0 0 100 Pyruvate kinase OS=Sus scrofa domesticus GN=PKM PE=3 SV=1 A0A0B8S031_PIG (+1) 26 52 16 IgM heavy chain constant region (Fragment) OS=Sus scrofa GN=IGHM PE=4 SV=1 K7ZJP7_PIG 25 38 31

TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

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Page 1: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

TABLE S1. Proteins identified by mass spectrometry in the tonsils of the soft palate of swine.

Identified Proteins (1650) Accession Number

PB

S

TB

S

Lysa

te

Actin, gamma 1 OS=Sus scrofa domesticus GN=ACTG1 PE=3 SV=1 A0A0B8RTA2_PIG (+3) 59 104 90

N-myosin-9 OS=Sus scrofa GN=MYH9 PE=2 SV=1 K9IVP5_PIG 8 27 170

Serotransferrin OS=Sus scrofa GN=TF PE=1 SV=2 TRFE_PIG 55 111 41

Vimentin OS=Sus scrofa domesticus GN=VIM PE=3 SV=1 A0A0B8RVD8_PIG (+1) 34 68 91

Filamin A, alpha OS=Sus scrofa domesticus GN=FLNA PE=4 SV=1 A0A0B8RSX6_PIG 10 45 124

Uncharacterized protein OS=Sus scrofa GN=COL6A3 PE=1 SV=1 I3LUR7_PIG 6 50 107

Talin-1 OS=Sus scrofa GN=TLN1 PE=2 SV=1 K9IWI4_PIG 16 81 66

Serum albumin OS=Sus scrofa GN=ALB PE=1 SV=1 F1RUN2_PIG 120 0 0

Uncharacterized protein OS=Sus scrofa GN=LCP1 PE=1 SV=2 F1RK02_PIG 19 79 40

Uncharacterized protein OS=Sus scrofa GN=EEF2 PE=1 SV=1 I3LII3_PIG 23 63 40

Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2

SV=3 HS90A_PIG 37 63 18

Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1 TBB5_PIG 18 38 67

Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1 FBN1_PIG 0 14 97

Uncharacterized protein OS=Sus scrofa GN=LOC100049693 PE=1 SV=2 F1RR78_PIG 0 34 80

Actinin, alpha 4 OS=Sus scrofa domesticus GN=ACTN4 PE=4 SV=1 A0A0B8S0C5_PIG (+1) 13 58 45

Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH

PE=1 SV=4 G3P_PIG 23 61 31

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B180_PIG 37 51 18

Uncharacterized protein OS=Sus scrofa GN=LOC100524210 PE=1 SV=2 F1S9Q3_PIG 26 43 35

Protein disulfide-isomerase OS=Sus scrofa GN=grp-58 PE=1 SV=1 E1CAJ5_PIG 25 43 39

Elongation factor 1-alpha OS=Sus scrofa GN=EEF1A PE=1 SV=1 Q0PY11_PIG 17 36 43

Myosin-1 OS=Sus scrofa GN=MYH1 PE=4 SV=1 F1SS64_PIG (+1) 0 0 100

Pyruvate kinase OS=Sus scrofa domesticus GN=PKM PE=3 SV=1 A0A0B8S031_PIG (+1) 26 52 16

IgM heavy chain constant region (Fragment) OS=Sus scrofa GN=IGHM

PE=4 SV=1 K7ZJP7_PIG 25 38 31

Page 2: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3 ENPL_PIG 19 46 31

Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=1 SV=1 TBA1B_PIG 13 33 47

Uncharacterized protein OS=Sus scrofa GN=LOC100737768 PE=1 SV=1 F1RGX4_PIG (+1) 30 39 14

Clathrin heavy chain OS=Sus scrofa GN=CLTC PE=2 SV=1 C0MHR2_PIG 17 31 31

ATP synthase subunit beta OS=Sus scrofa GN=ATP5B PE=1 SV=1 F1SLA0_PIG 12 27 46

Plectin (Fragment) OS=Sus scrofa GN=PLEC PE=2 SV=1 K9IVQ6_PIG 0 0 82

Enolase 1, (Alpha) OS=Sus scrofa domesticus GN=ENO1 PE=3 SV=1 A0A0B8RSY9_PIG 32 31 16

Uncharacterized protein OS=Sus scrofa GN=DHX9 PE=1 SV=1 I3LHZ6_PIG 5 29 46

Spectrin beta chain, brain 1 (Fragment) OS=Sus scrofa GN=SPTBN1 PE=2

SV=1 K9IWG6_PIG 0 21 54

ATP synthase subunit alpha, mitochondrial OS=Sus scrofa GN=ATP5A1

PE=1 SV=2 ATPA_PIG (+1) 14 21 36

Annexin OS=Sus scrofa GN=ANXA6 PE=2 SV=1 M3VH45_PIG 5 26 40

78 kDa glucose-regulated protein OS=Sus scrofa GN=HSPA5 PE=1 SV=2 F1RS36_PIG 25 25 27

Hemopexin OS=Sus scrofa GN=HPX PE=1 SV=1 HEMO_PIG 16 43 8

Uncharacterized protein OS=Sus scrofa GN=AHNAK PE=1 SV=1 I3L5D5_PIG 3 22 38

Calreticulin OS=Sus scrofa GN=CALR PE=1 SV=3 CALR_PIG 13 31 21

Uncharacterized protein OS=Sus scrofa GN=HNRNPU PE=1 SV=2 F1S8L9_PIG 3 25 38

Inter-alpha-trypsin inhibitor heavy chain H4 OS=Sus scrofa GN=ITIH4

PE=1 SV=1 ITIH4_PIG 13 40 15

Complement component 4A OS=Sus scrofa GN=C4A PE=4 SV=1 A5A8W8_PIG (+1) 9 32 25

Histone H4 OS=Sus scrofa PE=1 SV=2 H4_PIG 3 12 52

Alpha-2-macroglobulin OS=Sus scrofa GN=A2M PE=2 SV=1 K9J6H8_PIG 14 51 5

Annexin A2 OS=Sus scrofa GN=ANXA2 PE=1 SV=4 ANXA2_PIG (+1) 6 25 35

Uncharacterized protein OS=Sus scrofa GN=TGM2 PE=1 SV=1 F1SDX6_PIG 7 19 40

Decorin OS=Sus scrofa GN=DCN PE=2 SV=1 PGS2_PIG 6 18 40

Coronin OS=Sus scrofa GN=coro1a PE=3 SV=1 G8G223_PIG 16 34 12

Heterogeneous nuclear ribonucleoprotein A2/B1 OS=Sus scrofa

GN=HNRNPA2B1 PE=2 SV=1 M3UZ37_PIG 4 28 30

Protein-tyrosine-phosphatase OS=Sus scrofa domesticus GN=PTPRC

PE=4 SV=1 A0A0B8RZ84_PIG 0 30 31

Page 3: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

L-lactate dehydrogenase A chain OS=Sus scrofa GN=LDHA PE=1 SV=3 LDHA_PIG 7 45 9

Uncharacterized protein OS=Sus scrofa GN=FN1 PE=1 SV=1 F1SS24_PIG 0 0 60

Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa GN=ppia PE=2 SV=1 F2Q9A3_PIG (+1) 16 27 13

Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3 COF1_PIG 22 25 10

Signal transducer and activator of transcription (Fragment) OS=Sus scrofa

GN=STAT1 PE=1 SV=2 F1SN37_PIG (+3) 6 26 27

Uncharacterized protein OS=Sus scrofa GN=HNRNPK PE=1 SV=1 I3LQS0_PIG 13 23 22

Transketolase OS=Sus scrofa GN=tkt PE=1 SV=1 A8U4R4_PIG 10 41 7

Annexin OS=Sus scrofa GN=ANXA5 PE=1 SV=2 F2Z5C1_PIG 8 21 24

Gelsolin (Fragment) OS=Sus scrofa GN=GSN PE=1 SV=1 GELS_PIG 12 24 22

Interleukin enhancer binding factor 3, 90kDa OS=Sus scrofa domesticus

GN=ILF3 PE=4 SV=1 A0A0B8RSR5_PIG 4 24 25

Uncharacterized protein (Fragment) OS=Sus scrofa GN=YWHAZ PE=1

SV=2 F2Z558_PIG 14 24 13

Protein disulfide-isomerase OS=Sus scrofa PE=2 SV=1 G9F6X8_PIG 17 24 17

Haptoglobin OS=Sus scrofa GN=HP PE=1 SV=1 HPT_PIG 11 32 11

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0W9_PIG 22 52 20

GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21

Adenylyl cyclase-associated protein OS=Sus scrofa domesticus GN=CAP1

PE=3 SV=1 A0A0B8S0B1_PIG 5 38 9

Uncharacterized protein OS=Sus scrofa GN=HSPCB PE=1 SV=1 F1RQU2_PIG 31 54 17

Uncharacterized protein OS=Sus scrofa GN=LOC100519984 PE=1 SV=1 I3LRH2_PIG 10 17 23

Tropomyosin 4 OS=Sus scrofa GN=TPM4 PE=2 SV=1 D0G7F7_PIG (+1) 17 18 11

Histone H2A OS=Sus scrofa GN=LOC100154508 PE=3 SV=1 F1RPK0_PIG (+3) 6 5 35

Uncharacterized protein OS=Sus scrofa GN=PRELP PE=1 SV=2 F1S6B4_PIG 7 13 30

Uncharacterized protein (Fragment) OS=Sus scrofa GN=DDX17 PE=1

SV=2 F1SKQ0_PIG 6 22 24

Dihydropyrimidinase-like 2 OS=Sus scrofa PE=2 SV=1 G9F6X9_PIG (+1) 5 26 18

Hemoglobin subunit beta OS=Sus scrofa GN=HBB PE=1 SV=1 F1RII7_PIG 31 5 14

Glucose-6-phosphate isomerase OS=Sus scrofa GN=GPI PE=1 SV=3 G6PI_PIG 10 34 3

Protein disulfide-isomerase OS=Sus scrofa GN=PDIA4 PE=1 SV=1 F1SAD9_PIG 10 29 9

Page 4: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Neutral alpha-glucosidase AB OS=Sus scrofa GN=GANAB PE=1 SV=1 GANAB_PIG (+1) 8 31 12

Uncharacterized protein (Fragment) OS=Sus scrofa GN=KRT5 PE=1

SV=2 F1SGG6_PIG 0 0 51

WD repeat-containing protein 1 OS=Sus scrofa GN=WDR1 PE=2 SV=1 K9IVR7_PIG 12 31 3

Complement C3 OS=Sus scrofa GN=C3 PE=1 SV=2 CO3_PIG 0 33 11

Uncharacterized protein OS=Sus scrofa GN=NUMA1 PE=1 SV=2 F1SUX4_PIG 0 0 48

Uncharacterized protein OS=Sus scrofa GN=LUM PE=1 SV=1 F1SQ09_PIG 4 18 27

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC102161607

PE=4 SV=1 A0A0A0MY58_PIG (+1) 16 20 12

Actin-related protein 3 OS=Sus scrofa domesticus GN=ACTR3 PE=3

SV=1 A0A0B8RZS4_PIG (+2) 10 26 12

Protein disulfide isomerase P5 OS=Sus scrofa GN=pdi-p5 PE=1 SV=1 E1CAJ6_PIG 9 25 15

Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus

scrofa GN=IDH2 PE=1 SV=2 F1SK00_PIG (+1) 10 19 13

Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa

GN=GNB2L1 PE=1 SV=3 GBLP_PIG 13 18 15

Heat shock protein beta-1 OS=Sus scrofa GN=HSPB1 PE=2 SV=1 HSPB1_PIG 3 15 30

Uncharacterized protein OS=Sus scrofa GN=LMNB1 PE=1 SV=2 F1RKM0_PIG 0 14 29

Phosphoglycerate kinase 1 OS=Sus scrofa GN=PGK1 PE=1 SV=3 PGK1_PIG 0 36 12

Ceruloplasmin OS=Sus scrofa PE=2 SV=1 I3VKE6_PIG 14 28 5

Heat shock 70kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1 A5A8V6_PIG (+1) 17 26 16

Profilin OS=Sus scrofa GN=PFN1 PE=1 SV=1 F1RFY1_PIG 19 19 8

T-complex protein 1 subunit alpha OS=Sus scrofa GN=TCP1 PE=1 SV=1 F1SB63_PIG 6 23 17

Annexin OS=Sus scrofa GN=ANXA1 PE=1 SV=2 F1SJB5_PIG 8 12 20

Mitochondrial heat shock 60 kDa protein 1 OS=Sus scrofa PE=2 SV=1 G9F6X6_PIG 0 22 25

Chaperonin containing TCP1, subunit 2 (Beta) OS=Sus scrofa GN=CCT2

PE=1 SV=1 D0G0C8_PIG 6 24 14

Uncharacterized protein OS=Sus scrofa GN=HNRNPF PE=1 SV=1 F1RG16_PIG 5 12 27

Ras GTPase-activating-like protein IQGAP1 OS=Sus scrofa GN=IQGAP1

PE=2 SV=1 K9IWF9_PIG 10 23 13

Heterogeneous nuclear ribonucleoprotein A1 OS=Sus scrofa

GN=HNRNPA1 PE=1 SV=1 Q06A94_PIG 6 28 22

Page 5: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LQ84_PIG 2 13 29

Actin related protein 2/3 complex subunit 1B OS=Sus scrofa PE=2 SV=1 B5APU6_PIG 5 28 6

Transgelin (Fragment) OS=Sus scrofa GN=TAGLN2 PE=1 SV=1 F1RJ93_PIG 15 19 7

IgA heavy chian constant region (Fragment) OS=Sus scrofa GN=IGHA

PE=4 SV=1 K7ZRK0_PIG 7 21 13

Uncharacterized protein (Fragment) OS=Sus scrofa GN=HNRNPM PE=1

SV=1 F1SA50_PIG 0 9 30

Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2

PE=2 SV=1 ALDH2_PIG (+1) 5 19 15

Fibrinogen beta chain OS=Sus scrofa GN=FGB PE=1 SV=2 F1RX37_PIG 3 9 25

Uncharacterized protein OS=Sus scrofa GN=PGAM1 PE=1 SV=2 F1S8Y5_PIG 11 24 8

Uncharacterized protein OS=Sus scrofa GN=ILF2 PE=1 SV=1 K7GS49_PIG 2 20 21

Uncharacterized protein OS=Sus scrofa GN=MYBBP1A PE=1 SV=1 F1RGP1_PIG 0 19 21

Uncharacterized protein OS=Sus scrofa GN=LOC100627396 PE=1 SV=2 F1RX35_PIG 3 11 24

Uncharacterized protein OS=Sus scrofa GN=LOC100516776 PE=1 SV=2 F1SIH8_PIG 13 0 26

Uncharacterized protein OS=Sus scrofa GN=HSPG2 PE=1 SV=2 F1SU03_PIG 0 3 37

Ribosomal protein L4 OS=Sus scrofa domesticus GN=RPL4 PE=4 SV=1 A0A0B8RT95_PIG (+1) 4 20 17

HLA-B-associated protein 1 OS=Sus scrofa GN=BAT1 PE=1 SV=1 B9TSQ2_PIG (+1) 7 19 14

Uncharacterized protein OS=Sus scrofa GN=PEBP1 PE=1 SV=1 F1RKG8_PIG 11 20 7

Malate dehydrogenase OS=Sus scrofa GN=LOC100622330 PE=3 SV=1 I3LP41_PIG (+1) 2 22 15

GTP-binding nuclear protein Ran OS=Sus scrofa GN=RAN PE=1 SV=2 F1RFQ7_PIG 13 17 8

Uncharacterized protein (Fragment) OS=Sus scrofa GN=AGR2 PE=1

SV=2 F1SEI7_PIG (+1) 11 14 12

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LS04_PIG 6 28 21

Ribonuclease inhibitor OS=Sus scrofa GN=RNH1 PE=1 SV=1 RINI_PIG 16 18 6

60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=1 SV=2 RLA0_PIG 4 18 16

Elongation factor 1-gamma OS=Sus scrofa GN=EEF1G PE=1 SV=1 F1RPW9_PIG 8 24 4

Polyadenylate-binding protein OS=Sus scrofa GN=PABPC1 PE=1 SV=1 F2Z557_PIG (+1) 6 16 14

Uncharacterized protein OS=Sus scrofa GN=CCT8 PE=1 SV=1 I3LCA2_PIG 5 18 13

Coatomer subunit alpha OS=Sus scrofa GN=COPA PE=1 SV=1 F1RJX8_PIG 0 13 20

U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Sus scrofa K9J4V0_PIG 0 21 12

Page 6: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

GN=SNRNP200 PE=2 SV=1

Leukocyte elastase inhibitor OS=Sus scrofa GN=SERPINB1 PE=1 SV=1 F2Z5B1_PIG 8 22 4

Uncharacterized protein OS=Sus scrofa GN=KPNB1 PE=1 SV=2 F1RWJ5_PIG (+1) 0 20 17

Eukaryotic translation initiation factor 4A isoform 1 OS=Sus scrofa

GN=EIF4A1 PE=1 SV=1 A6M928_PIG 0 15 19

Transforming growth factor-beta-induced protein ig-h3 OS=Sus scrofa

GN=TGFBI PE=1 SV=1 BGH3_PIG 0 22 14

Uncharacterized protein OS=Sus scrofa GN=DSP PE=1 SV=2 F1RW75_PIG 0 0 36

Uncharacterized protein OS=Sus scrofa GN=KRT13 PE=1 SV=1 F1S0K1_PIG 0 0 33

Cullin-associated and neddylation-dissociated 1 OS=Sus scrofa domesticus

GN=CAND1 PE=4 SV=1 A0A0B8RT59_PIG (+2) 4 24 8

Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=1 SV=1 D0G7F6_PIG 28 6 3

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

OS=Sus scrofa GN=RPN1 PE=1 SV=1 F1SPG2_PIG (+1) 0 10 24

Aspartate aminotransferase, mitochondrial OS=Sus scrofa GN=GOT2

PE=1 SV=2 AATM_PIG 5 22 9

Actin related protein 2/3 complex subunit 2 OS=Sus scrofa PE=2 SV=1 B5APU7_PIG 8 22 4

T-complex protein 1 subunit gamma OS=Sus scrofa GN=CCT3 PE=1

SV=2 F1RP17_PIG 3 14 14

Uncharacterized protein OS=Sus scrofa GN=CNDP2 PE=1 SV=1 F1SNL7_PIG 8 22 4

Histone H2B OS=Sus scrofa GN=LOC100523961 PE=3 SV=1 F2Z5L0_PIG (+2) 4 7 22

GTPase IMAP family member 4 OS=Sus scrofa GN=GIMAP4 PE=2

SV=1 K9IVM5_PIG 4 19 8

Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1 NDKB_PIG 12 13 9

T-complex protein 1 subunit delta OS=Sus scrofa GN=CCT4 PE=1 SV=1 F1SQN1_PIG 2 16 17

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A

alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2 2AAA_PIG 3 21 11

Cardiac muscle alpha actin 1 OS=Sus scrofa GN=ACTC1 PE=2 SV=1 B6VNT8_PIG 38 0 59

Stress-70 protein, mitochondrial OS=Sus scrofa GN=HSPA9 PE=1 SV=2 F1RGJ3_PIG 7 13 16

Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=1

SV=1 F1RUK8_PIG 16 6 11

Proteasome activator complex subunit 1 OS=Sus scrofa GN=PSME1 PE=2 PSME1_PIG 6 17 8

Page 7: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

SV=1

Creatine kinase M-type OS=Sus scrofa GN=CKM PE=2 SV=1 KCRM_PIG 9 19 2

Uncharacterized protein OS=Sus scrofa GN=KRT4 PE=1 SV=1 I3LQN8_PIG 0 0 39

Uncharacterized protein OS=Sus scrofa GN=FERMT3 PE=1 SV=2 F1RQ01_PIG 5 24 5

40S ribosomal protein S4 OS=Sus scrofa GN=RPS4 PE=1 SV=2 F1RQ91_PIG 4 13 11

Alpha-1-acid glycoprotein OS=Sus scrofa GN=ORM1 PE=3 SV=1 F1SN68_PIG (+2) 9 18 6

Uncharacterized protein OS=Sus scrofa GN=SELENBP1 PE=1 SV=1 F1ST01_PIG 5 21 7

Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1

SV=4 MDHC_PIG 6 19 3

DJ-1 protein OS=Sus scrofa GN=PARK7 PE=2 SV=1 Q0R678_PIG 9 18 5

40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=1 SV=1 RS3_PIG 7 14 11

Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa

GN=HADHA PE=1 SV=1 ECHA_PIG 0 11 21

Actin-related protein 2-like protein OS=Sus scrofa GN=ACTR2 PE=1

SV=1 B5APU3_PIG 5 18 9

Uncharacterized protein OS=Sus scrofa GN=PRDX1 PE=1 SV=2 F1S3U9_PIG 9 13 9

Tropomyosin 3 OS=Sus scrofa GN=TPM3 PE=1 SV=1 Q6QA25_PIG 12 22 9

40S ribosomal protein SA OS=Sus scrofa GN=RPSA PE=1 SV=3 RSSA_PIG 5 18 10

40S ribosomal protein S3a OS=Sus scrofa GN=RPS3A PE=1 SV=1 F2Z5C7_PIG 4 16 12

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LQ17_PIG 6 25 0

60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=1 SV=3 RL6_PIG 4 16 11

Uncharacterized protein OS=Sus scrofa GN=HNRNPA3 PE=1 SV=1 F2Z5B4_PIG 2 15 18

Uncharacterized protein (Fragment) OS=Sus scrofa GN=AP2B1 PE=1

SV=1 I3L6Y6_PIG 2 16 12

ATP-citrate synthase OS=Sus scrofa domesticus GN=ACLY PE=3 SV=1 A0A0B8RW53_PIG (+3) 6 17 7

Guanine nucleotide binding protein (G protein), beta polypeptide 1

OS=Sus scrofa domesticus GN=GNB1 PE=4 SV=1 A0A0B8RZJ8_PIG 3 12 14

40S ribosomal protein S8 (Fragment) OS=Sus scrofa GN=RPS8 PE=1

SV=2 F2Z5F5_PIG 6 14 9

Uncharacterized protein OS=Sus scrofa GN=RAC2 PE=1 SV=1 I3LKU0_PIG 3 14 12

Plasminogen OS=Sus scrofa GN=PLG PE=1 SV=3 PLMN_PIG 3 17 8

Ribosomal protein L7 OS=Sus scrofa PE=2 SV=1 A8YQT9_PIG 3 15 9

Page 8: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=EFTUD2 PE=1 SV=2 F1RQZ9_PIG 3 9 20

Uncharacterized protein OS=Sus scrofa GN=HYOU1 PE=1 SV=1 F1SAI8_PIG (+1) 4 15 7

Uncharacterized protein OS=Sus scrofa GN=HNRNPR PE=1 SV=1 I3LKZ4_PIG (+1) 5 17 8

Uncharacterized protein (Fragment) OS=Sus scrofa GN=GC PE=1 SV=1 I3LN42_PIG 4 21 3

Uncharacterized protein OS=Sus scrofa GN=HNRNPH1 PE=1 SV=1 F2Z5H9_PIG 4 11 21

Glutathione S-transferase pi 1 OS=Sus scrofa GN=GSTP1 PE=2 SV=1 M3V836_PIG 18 0 5

Matrin 3 OS=Sus scrofa domesticus GN=MATR3 PE=4 SV=1 A0A0B8RVQ4_PIG (+1) 0 11 18

Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation

protein, beta OS=Sus scrofa domesticus GN=YWHAB PE=3 SV=1 A0A0B8RVD2_PIG (+1) 9 22 13

Chaperonin containing TCP1, subunit 7 (Eta) OS=Sus scrofa GN=CCT7

PE=2 SV=1 D0G0C9_PIG (+1) 4 12 9

Coronin OS=Sus scrofa GN=LOC100513346 PE=1 SV=2 F1RK53_PIG 3 17 7

Proteasome activator complex subunit 2 OS=Sus scrofa GN=PSME2 PE=1

SV=2 F1SGM3_PIG (+1) 4 16 7

Uncharacterized protein OS=Sus scrofa GN=CCT6A PE=1 SV=1 F1RIU3_PIG 2 12 13

Uncharacterized protein OS=Sus scrofa GN=HNRNPC PE=1 SV=1 I3LK71_PIG 2 12 15

Uncharacterized protein OS=Sus scrofa GN=IPO5 PE=1 SV=1 F1RP44_PIG 0 16 10

Fascin OS=Sus scrofa GN=FSCN1 PE=2 SV=1 C0LZL0_PIG (+2) 6 19 0

Poly [ADP-ribose] polymerase OS=Sus scrofa domesticus GN=PARP1

PE=4 SV=1 A0A0B8RZA8_PIG (+1) 0 7 19

Uncharacterized protein OS=Sus scrofa GN=GBP1 PE=1 SV=2 F1S4D7_PIG (+1) 0 23 3

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=3 F1STC5_PIG 0 19 9

Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3 H33_PIG (+1) 0 3 16

Isoform 1 of Vinculin OS=Sus scrofa GN=VCL VINC_PIG 6 14 6

60S ribosomal protein L3 OS=Sus scrofa GN=RPL3 PE=1 SV=2 F1SNY2_PIG 2 13 8

ADP/ATP translocase 3 OS=Sus scrofa GN=SLC25A6 PE=2 SV=3 ADT3_PIG 0 9 14

Calcium-binding protein A12 OS=Sus scrofa PE=2 SV=1 C3S7K4_PIG (+1) 0 11 15

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PRPF8 PE=1

SV=2 F1RHH8_PIG 0 18 10

Uncharacterized protein OS=Sus scrofa GN=CANX PE=1 SV=1 F1S441_PIG 0 4 20

Desmin OS=Sus scrofa GN=DES PE=1 SV=4 DESM_PIG 0 0 33

Page 9: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=KRT14 PE=1 SV=2 F1S0L1_PIG 0 0 31

Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=1 D9D839_PIG (+1) 9 11 6

Uncharacterized protein OS=Sus scrofa GN=DDX3X PE=1 SV=2 F1RX16_PIG (+1) 3 10 15

Eukaryotic translation initiation factor 5A OS=Sus scrofa GN=EIF5A

PE=1 SV=1 F2Z5M3_PIG 6 11 8

40S ribosomal protein S13 OS=Sus scrofa GN=RPS13 PE=1 SV=2 F6Q5P0_PIG 8 9 5

L-lactate dehydrogenase B chain OS=Sus scrofa GN=LDHB PE=1 SV=3 LDHB_PIG 11 23 9

Uncharacterized protein OS=Sus scrofa GN=CAPG PE=1 SV=1 F1SVB0_PIG 2 16 8

Uncharacterized protein OS=Sus scrofa GN=ESYT1 PE=1 SV=1 F1SPG9_PIG 0 5 20

Uncharacterized protein OS=Sus scrofa GN=NPEPPS PE=1 SV=1 F1RWJ6_PIG 6 20 0

Uncharacterized protein OS=Sus scrofa GN=EHD1 PE=1 SV=2 F1RQR4_PIG 0 12 12

Uncharacterized protein OS=Sus scrofa GN=SSB PE=1 SV=2 F1S1V1_PIG 0 13 10

Uncharacterized protein OS=Sus scrofa GN=FLNB PE=1 SV=2 F1SGJ3_PIG 0 11 16

Ribosomal protein L7a OS=Sus scrofa domesticus GN=RPL7A PE=4

SV=1 A0A0B8RSA9_PIG 6 12 8

Capping protein (Actin filament) muscle Z-line, alpha 1 OS=Sus scrofa

GN=CP alpha1 PE=1 SV=1 A0PFK5_PIG 7 10 6

Uncharacterized protein OS=Sus scrofa GN=HSPA4 PE=1 SV=1 F1RI15_PIG 6 15 3

Uncharacterized protein OS=Sus scrofa GN=ARCN1 PE=1 SV=1 I3LBY0_PIG 4 12 8

Myoglobin OS=Sus scrofa GN=MB PE=1 SV=2 MYG_PIG 4 19 3

Tyrosine-protein phosphatase non-receptor type OS=Sus scrofa

GN=PTPN6 PE=1 SV=1 I3LKA3_PIG 0 12 11

Histone-binding protein RBBP4 OS=Sus scrofa GN=RBBP4 PE=2 SV=1 K9IVR0_PIG 0 11 10

Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa

GN=VDAC2 PE=2 SV=1 VDAC2_PIG 0 6 19

Uncharacterized protein OS=Sus scrofa GN=COL14A1 PE=1 SV=2 F1S285_PIG 4 19 0

Adenosylhomocysteinase OS=Sus scrofa GN=AHCY PE=2 SV=1 D0G0C3_PIG (+1) 6 20 0

Ribosomal protein L12 OS=Sus scrofa domesticus GN=RPL12 PE=3

SV=1 A0A0B8RZ72_PIG (+1) 6 9 10

Uncharacterized protein OS=Sus scrofa GN=PRDX5 PE=1 SV=2 F1RQP0_PIG 7 14 3

Uncharacterized protein OS=Sus scrofa GN=PRDX3 PE=1 SV=1 F1S418_PIG 4 12 8

Alpha-1B-glycoprotein OS=Sus scrofa GN=A1BG PE=1 SV=1 F1SC20_PIG 4 14 6

Page 10: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=PCBP2 PE=1 SV=2 F1SFQ4_PIG 3 8 14

Uncharacterized protein OS=Sus scrofa GN=TMPO PE=1 SV=2 F1SQS2_PIG 7 12 6

Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa

GN=IFI30 PE=2 SV=1 GILT_PIG 4 11 9

Uncharacterized protein OS=Sus scrofa GN=RPL9 PE=1 SV=1 I3LP78_PIG 7 13 5

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0U3_PIG 29 46 17

Histone H1.2-like protein OS=Sus scrofa PE=3 SV=1 Q4TTS4_PIG 3 6 15

Serine protease inhibitor 9 OS=Sus scrofa GN=PI-9 PE=2 SV=1 A0PA01_PIG 2 18 4

Cathepsin B OS=Sus scrofa GN=CTSB PE=3 SV=1 B2CNZ7_PIG (+1) 2 15 7

Alcohol dehydrogenase [NADP(+)] OS=Sus scrofa GN=AKR1A1 PE=1

SV=1 I3L929_PIG 7 15 2

Uncharacterized protein OS=Sus scrofa GN=ASPN PE=1 SV=1 F1SUE4_PIG 0 5 19

B-factor, properdin OS=Sus scrofa GN=BF PE=3 SV=1 A5PF00_PIG (+2) 7 16 0

Leukotriene A(4) hydrolase OS=Sus scrofa GN=AmpT PE=2 SV=1 E0D7H7_PIG (+1) 5 16 0

Uncharacterized protein OS=Sus scrofa GN=NPM1 PE=1 SV=2 F1RRY2_PIG (+2) 0 10 13

Uncharacterized protein OS=Sus scrofa GN=PGM1 PE=1 SV=2 F1S814_PIG 3 22 0

Uncharacterized protein OS=Sus scrofa GN=MYH10 PE=1 SV=2 F1SSA6_PIG 0 0 49

Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2 MYH7_PIG 0 0 43

Citrate synthase OS=Sus scrofa domesticus GN=CS PE=3 SV=1 A0A0B8S099_PIG (+1) 6 10 6

60S ribosomal protein L5 OS=Sus scrofa GN=RPL5 PE=1 SV=1 F1S530_PIG 5 10 6

Uncharacterized protein OS=Sus scrofa GN=GFPT1 PE=1 SV=2 F1SPM6_PIG (+1) 5 13 4

Uncharacterized protein OS=Sus scrofa GN=RPS5 PE=1 SV=1 F2Z5E6_PIG 5 12 6

Uncharacterized protein OS=Sus scrofa GN=LOC100522926 PE=1 SV=1 F2Z5G3_PIG 5 10 9

Glutamate dehydrogenase 1, mitochondrial OS=Sus scrofa GN=GLUD1

PE=1 SV=1 F1SEN2_PIG 2 14 6

Osteoglycin/mimecan OS=Sus scrofa GN=OGN PE=2 SV=1 A0A0H5ANC0_PIG 2 4 17

Uncharacterized protein OS=Sus scrofa GN=H1FX PE=1 SV=1 F1SPG1_PIG 2 6 15

Ubiquitin-like modifier activating enzyme 1 OS=Sus scrofa domesticus

GN=UBA1 PE=3 SV=1 A0A0B8RZ10_PIG 11 0 9

Uncharacterized protein (Fragment) OS=Sus scrofa GN=XPO1 PE=1

SV=1 I3LLS7_PIG 0 12 10

Page 11: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Proliferating cell nuclear antigen OS=Sus scrofa GN=PCNA PE=1 SV=1 I3L813_PIG 5 15 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=VPS35 PE=1

SV=1 I3LBB2_PIG 3 20 0

Aconitate hydratase OS=Sus scrofa domesticus GN=ACO1 PE=3 SV=1 A0A0B8RTY4_PIG (+1) 7 15 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=MTHFD1 PE=1

SV=2 F1SA74_PIG (+1) 0 19 4

LIM and SH3 protein 1 OS=Sus scrofa GN=LASP1 PE=2 SV=1 M3VJZ7_PIG 0 12 7

CArG-binding factor A OS=Sus scrofa GN=CBF-A PE=2 SV=1 A9ED96_PIG 5 10 6

CD90 protein OS=Sus scrofa GN=CD90 PE=1 SV=1 B9ZSM8_PIG (+1) 3 8 9

Cell division control protein 42 homolog OS=Sus scrofa GN=CDC42

PE=2 SV=2 CDC42_PIG 3 11 8

60S acidic ribosomal protein P2 OS=Sus scrofa GN=RPLP2 PE=1 SV=1 F1RYZ0_PIG 8 7 8

Thioredoxin OS=Sus scrofa GN=TRX1 PE=2 SV=1 H6TBN0_PIG (+1) 7 7 6

Uncharacterized protein OS=Sus scrofa GN=YWHAQ PE=1 SV=2 F1SA98_PIG 8 22 11

Rho GDP dissociation inhibitor alpha OS=Sus scrofa GN=ARHGDIA

PE=2 SV=1 E7EI20_PIG 4 13 2

Alpha-1,4 glucan phosphorylase OS=Sus scrofa PE=2 SV=1 B1A8Z3_PIG (+1) 3 16 2

Uncharacterized protein OS=Sus scrofa GN=FUBP1 PE=1 SV=2 F1S9S5_PIG (+1) 0 13 6

Aldo-keto reductase family 1, member B1 (Aldose reductase) OS=Sus

scrofa domesticus GN=AKR1B1 PE=4 SV=1 A0A0B8S0C2_PIG (+1) 4 18 0

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

OS=Sus scrofa domesticus GN=SDHA PE=3 SV=1 A0A0B8RT86_PIG (+1) 0 4 18

Uncharacterized protein OS=Sus scrofa GN=LOC100155084 PE=1 SV=2 F1RRK9_PIG 0 9 11

Eukaryotic translation initiation factor 3 subunit A OS=Sus scrofa

GN=EIF3A PE=1 SV=1 F1S4P6_PIG 0 16 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=MYO1C PE=1

SV=1 I3LIL4_PIG 0 6 16

Junction plakoglobin OS=Sus scrofa GN=Jup PE=2 SV=1 PLAK_PIG 0 0 20

Actin related protein 2/3 complex subunit 4 OS=Sus scrofa PE=2 SV=1 B5APU9_PIG (+1) 6 10 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100622075

PE=1 SV=2 F1RJT3_PIG 3 8 13

Uncharacterized protein OS=Sus scrofa GN=ETFA PE=1 SV=1 F1SJX1_PIG (+1) 4 12 6

Page 12: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=SET PE=1 SV=1 F1RR69_PIG 2 14 3

ATP synthase subunit gamma OS=Sus scrofa domesticus GN=ATP5C1

PE=3 SV=1 A0A0B8RW24_PIG 2 7 9

Fructose-bisphosphate aldolase OS=Sus scrofa GN=ALDOC PE=1 SV=2 F1RJ25_PIG 3 14 2

Uncharacterized protein OS=Sus scrofa GN=RPS11 PE=1 SV=1 F2Z4Y8_PIG 2 10 8

Calpain-1 catalytic subunit OS=Sus scrofa GN=CAPN1 PE=2 SV=3 CAN1_PIG 0 14 7

Uncharacterized protein OS=Sus scrofa GN=LOC102158263 PE=1 SV=2 F1RX36_PIG 0 7 11

Uncharacterized protein OS=Sus scrofa GN=LRPPRC PE=1 SV=1 F1S5J1_PIG (+1) 0 12 9

Uncharacterized protein OS=Sus scrofa GN=ARHGDIB PE=1 SV=2 F1SQW8_PIG 0 17 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RCC2 PE=1

SV=1 F1SUQ8_PIG 0 13 5

Uncharacterized protein OS=Sus scrofa GN=RHOA PE=1 SV=1 I3LVS7_PIG 0 14 8

Dedicator of cytokinesis 2 OS=Sus scrofa GN=DOCK2 PE=2 SV=1 K9J6I8_PIG 0 10 11

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

OS=Sus scrofa GN=RPN2 PE=2 SV=1 RPN2_PIG 0 3 19

MLC1f OS=Sus scrofa GN=MYL1 PE=1 SV=1 A1XQT6_PIG 0 2 20

Core histone macro-H2A OS=Sus scrofa GN=H2AFY PE=1 SV=2 F1RHC5_PIG 0 0 27

Uncharacterized protein OS=Sus scrofa GN=KHSRP PE=1 SV=2 F1SBT6_PIG 4 10 9

Uncharacterized protein OS=Sus scrofa GN=SEPT7 PE=1 SV=2 F1SIK9_PIG 3 12 5

Uncharacterized protein OS=Sus scrofa GN=PCBP1 PE=1 SV=1 I3LEC2_PIG 4 11 15

Protegrin-1 OS=Sus scrofa GN=NPG1 PE=4 SV=1 I3LU31_PIG 6 8 5

Chaperonin 10 OS=Sus scrofa PE=2 SV=1 Q6WSP6_PIG 2 8 7

Uncharacterized protein OS=Sus scrofa GN=SEPT9 PE=1 SV=2 F1RZ71_PIG 2 10 5

Phosphoinositide phospholipase C OS=Sus scrofa GN=PLCG2 PE=1

SV=2 F1S475_PIG 4 13 2

Uncharacterized protein OS=Sus scrofa GN=RPL8 PE=1 SV=1 K7GLA0_PIG 2 6 8

Coatomer subunit beta OS=Sus scrofa GN=COPB1 PE=2 SV=1 COPB_PIG 0 7 12

UDP-glucose glycoprotein glucosyltransferase 1 OS=Sus scrofa

GN=UGGT1 PE=2 SV=1 K9J4P3_PIG 0 11 4

Uncharacterized protein OS=Sus scrofa GN=SERBP1 PE=1 SV=2 F1S827_PIG 0 11 6

Uncharacterized protein OS=Sus scrofa GN=HP1BP3 PE=1 SV=1 F1SU06_PIG 0 6 14

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Uncharacterized protein OS=Sus scrofa GN=HNRNPL PE=1 SV=1 I3LPU8_PIG 0 11 8

ADP-ribosylation factor 1 OS=Sus scrofa GN=ARF1 PE=1 SV=1 C4MXZ1_PIG 0 10 9

High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2 HMGB2_PIG 0 9 11

Inhibitor of carbonic anhydrase OS=Sus scrofa GN=ICA PE=1 SV=1 ICA_PIG 8 19 0

Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1 MYH1_PIG 0 0 100

Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=1

SV=2 F1S6R7_PIG 9 5 4

Uncharacterized protein OS=Sus scrofa GN=VAT1 PE=1 SV=1 I3L9V2_PIG 3 9 8

ELAV-like protein OS=Sus scrofa GN=ELAVL1 PE=1 SV=1 D3K5N7_PIG 0 5 11

Uncharacterized protein OS=Sus scrofa GN=EPRS PE=1 SV=1 F1S9K5_PIG 0 13 4

Uncharacterized protein OS=Sus scrofa GN=LOC100153899 PE=1 SV=2 F1SCC6_PIG 0 8 9

Uncharacterized protein OS=Sus scrofa GN=CR2 PE=1 SV=1 I3LK97_PIG 2 15 0

Prohibitin OS=Sus scrofa domesticus GN=PHB PE=4 SV=1 A0A0B8RZA3_PIG (+1) 0 5 15

ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1

SV=1 ATPO_PIG 0 6 13

Malic enzyme OS=Sus scrofa GN=ME2 PE=1 SV=2 F1RPN9_PIG 0 15 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PGM2 PE=1

SV=1 F1S4K7_PIG (+2) 4 14 0

Uncharacterized protein OS=Sus scrofa GN=ANP32A PE=1 SV=2 F1SIV3_PIG 6 13 0

Uncharacterized protein OS=Sus scrofa GN=HNRNPUL2 PE=1 SV=1 I3LUR1_PIG 0 7 12

CD74 antigen OS=Sus scrofa GN=cd74 PE=2 SV=1 Q764N1_PIG 0 6 11

Stress-induced phosphoprotein 1 OS=Sus scrofa domesticus GN=STIP1

PE=4 SV=1 A0A0B8RZ32_PIG 2 15 0

Uncharacterized protein OS=Sus scrofa GN=UQCRC1 PE=1 SV=1 F1SKM0_PIG 0 2 16

Ribosomal protein OS=Sus scrofa GN=RPL10A PE=2 SV=1 A1XQU2_PIG (+1) 4 5 9

Uncharacterized protein (Fragment) OS=Sus scrofa GN=EZR PE=1 SV=1 F1SB42_PIG 4 11 3

Inter-alpha-trypsin inhibitor heavy chain H4 OS=Sus scrofa GN=ITIH4

PE=1 SV=2 F1SH92_PIG 14 38 15

Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=1 SV=1 F2Z5U4_PIG (+2) 5 8 5

Coagulation factor XIII, A1 polypeptide OS=Sus scrofa GN=F13A1 PE=1

SV=1 K7GQL2_PIG 4 9 5

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0R9_PIG 24 52 23

Page 14: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

17beta-estradiol dehydrogenase OS=Sus scrofa PE=2 SV=1 Q28956_PIG 3 7 8

40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2 RS12_PIG 4 7 7

Transgelin OS=Sus scrofa GN=TAGLN PE=1 SV=2 F1SJS8_PIG 4 12 2

Uncharacterized protein OS=Sus scrofa GN=FAM49B PE=1 SV=2 F1RRT3_PIG 3 13 2

Uncharacterized protein OS=Sus scrofa GN=RPS10 PE=1 SV=1 F1RZ28_PIG 2 9 6

Actin-related protein 2/3 complex subunit 3 OS=Sus scrofa GN=ARPC3

PE=1 SV=1 B5APU8_PIG 0 8 5

Uncharacterized protein OS=Sus scrofa GN=HIST1H1B PE=1 SV=1 I3L6Q5_PIG 0 4 18

GCN1 general control of amino-acid synthesis 1-like 1 OS=Sus scrofa

GN=GCN1L1 PE=2 SV=1 K9IW91_PIG 0 4 14

Fatty acid binding protein 5 (Fragment) OS=Sus scrofa GN=FABP5 PE=2

SV=1 Q19KE2_PIG (+1) 5 10 0

Glucose-6-phosphate 1-dehydrogenase OS=Sus scrofa domesticus

GN=G6PD PE=3 SV=1 A0A0B8RVW4_PIG 2 15 0

Proliferation-associated 2G4, 38kDa OS=Sus scrofa domesticus

GN=PA2G4 PE=4 SV=1 A0A0B8RZA9_PIG 0 13 6

2',3'-cyclic-nucleotide 3'-phosphodiesterase OS=Sus scrofa GN=CNP

PE=1 SV=1 F1S0P3_PIG 0 7 10

4-trimethylaminobutyraldehyde dehydrogenase OS=Sus scrofa

GN=ALDH9A1 PE=1 SV=2 F1S232_PIG 7 12 0

Uncharacterized protein OS=Sus scrofa GN=LCTHIO PE=1 SV=2 F1SDN2_PIG 0 7 12

Hexokinase (Fragment) OS=Sus scrofa GN=HK1 PE=1 SV=2 F1SUF2_PIG 0 4 13

Uncharacterized protein OS=Sus scrofa GN=RBM39 PE=1 SV=2 F2Z5I2_PIG 0 9 10

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RPS6 PE=1 SV=2 F2Z5Q6_PIG 0 7 7

Uncharacterized protein OS=Sus scrofa GN=CCT5 PE=1 SV=1 I3LR32_PIG 0 11 6

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NONO PE=1

SV=1 I3LSU1_PIG (+1) 0 8 11

Triokinase/FMN cyclase OS=Sus scrofa GN=TKFC PE=1 SV=2 TKFC_PIG 5 14 0

Elongation factor Tu OS=Sus scrofa GN=TUFM PE=1 SV=1 F1RFI1_PIG 2 0 17

Tryptophan--tRNA ligase, cytoplasmic isoform a OS=Sus scrofa

GN=WARS PE=2 SV=1 K9IVV5_PIG 0 16 3

Nicotinamide nucleotide transhydrogenase OS=Sus scrofa GN=NNT PE=2 K9IW80_PIG 0 0 17

Page 15: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

SV=1

Chloride intracellular channel protein OS=Sus scrofa domesticus

GN=CLIC1 PE=3 SV=1 A0A0B8S0A2_PIG 6 9 3

Uncharacterized protein OS=Sus scrofa GN=RAP1A PE=1 SV=1 I3L5L1_PIG 7 5 6

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LLI8_PIG 5 11 6

DEAD (Asp-Glu-Ala-Asp) box helicase 1 OS=Sus scrofa GN=DDX1

PE=2 SV=1 M3TYC8_PIG 3 10 3

Succinyl-CoA ligase subunit beta OS=Sus scrofa GN=SUCLG2 PE=1

SV=2 F1SFR6_PIG (+1) 2 7 5

Exportin-2 OS=Sus scrofa domesticus GN=CSE1L PE=4 SV=1 A0A0B8RZM8_PIG 2 9 5

Lymphocyte-specific protein 1 OS=Sus scrofa domesticus GN=LSP1 PE=4

SV=1 A0A0B8S055_PIG 2 8 7

Antioxidant protein 1 homolog (Yeast) OS=Sus scrofa GN=ATOX1 PE=2

SV=1 D0G0C7_PIG 6 9 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=COTL1 PE=1

SV=1 I3LI44_PIG 4 8 4

40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=1 SV=3 RS18_PIG 0 6 6

Uncharacterized protein OS=Sus scrofa GN=SEPT1 PE=1 SV=1 F1RG60_PIG 0 7 10

Uncharacterized protein OS=Sus scrofa GN=RPL17 PE=1 SV=1 I3LT81_PIG 0 11 5

Uncharacterized protein OS=Sus scrofa GN=HRG PE=1 SV=2 F1SFI5_PIG 2 14 0

SAM domain and HD domain-containing protein 1 OS=Sus scrofa

GN=SAMHD1 PE=2 SV=1 A0A023VTS2_PIG 0 10 7

Solute carrier family 25 member 3 OS=Sus scrofa GN=SLC25A3 PE=2

SV=1 C8C420_PIG (+1) 0 6 11

Uncharacterized protein OS=Sus scrofa GN=LOC100514795 PE=1 SV=1 F2Z522_PIG 0 9 9

Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3 PRDX6_PIG 7 9 0

Voltage-dependent anion-selective channel protein 1 OS=Sus scrofa

GN=VDAC1 PE=2 SV=3 VDAC1_PIG 0 0 17

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NUP210 PE=1

SV=2 F1SPG4_PIG 0 0 17

Uncharacterized protein OS=Sus scrofa GN=HSD17B10 PE=1 SV=1 F1RUI1_PIG (+1) 4 5 8

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1STC2_PIG 6 6 5

Page 16: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=LOC100154783 PE=1 SV=1 I3LUC8_PIG 3 5 6

Serine/threonine-protein phosphatase OS=Sus scrofa GN=PPP1CA PE=1

SV=1 Q2EHH8_PIG 3 4 10

Uncharacterized protein OS=Sus scrofa GN=SFN PE=1 SV=1 F1STR9_PIG (+1) 9 17 7

60S ribosomal protein L13 OS=Sus scrofa GN=RPL13 PE=1 SV=1 I3LSD3_PIG 2 7 6

Uncharacterized protein OS=Sus scrofa GN=SND1 PE=1 SV=1 F1SML4_PIG 0 9 6

Uncharacterized protein OS=Sus scrofa GN=LMNB2 PE=1 SV=1 I3LC25_PIG 0 3 15

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LGN5_PIG 0 3 13

Histone H2A OS=Sus scrofa GN=H2AFX PE=1 SV=1 I3L7T6_PIG 0 8 37

Uncharacterized protein OS=Sus scrofa GN=DDB1 PE=1 SV=1 F1RIE2_PIG 0 12 2

Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) OS=Sus

scrofa domesticus GN=TAP1 PE=3 SV=1 A0A0B8RT32_PIG (+1) 0 4 13

Ribosomal protein L10 OS=Sus scrofa domesticus GN=RPL10 PE=4

SV=1 A0A0B8S018_PIG (+1) 0 9 8

Uncharacterized protein OS=Sus scrofa GN=LOC100156689 PE=1 SV=2 F1RQI0_PIG 0 3 13

Uncharacterized protein OS=Sus scrofa GN=SEC31A PE=1 SV=2 F1RVD4_PIG 0 11 5

Uncharacterized protein OS=Sus scrofa GN=SRSF3 PE=4 SV=1 F1RY92_PIG (+1) 0 4 13

Uncharacterized protein OS=Sus scrofa GN=TAPBP PE=1 SV=2 F1RZT0_PIG (+1) 0 3 13

Uncharacterized protein OS=Sus scrofa GN=COPB2 PE=1 SV=2 F1SL54_PIG 0 5 11

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SERPINH1 PE=1

SV=1 F1SUM3_PIG 0 5 10

Uncharacterized protein OS=Sus scrofa GN=LOC100736789 PE=1 SV=1 I3L5B2_PIG 0 7 8

Uncharacterized protein OS=Sus scrofa GN=RPS2 PE=1 SV=1 I3LJ87_PIG 0 10 7

Uncharacterized protein OS=Sus scrofa GN=PHB2 PE=1 SV=1 I3LQN4_PIG 0 3 12

Uncharacterized protein OS=Sus scrofa GN=COL6A1 PE=1 SV=1 I3LS72_PIG 0 7 9

Lamin B receptor OS=Sus scrofa GN=LBR PE=2 SV=1 M3VH35_PIG 0 6 8

Ubiquitous tropomodulin U-Tmod OS=Sus scrofa GN=TMOD3 PE=1

SV=1 Q9N0Y9_PIG 0 6 11

60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=1 SV=1 RL27_PIG 0 8 8

Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2

SV=3 SRSF1_PIG 0 7 9

Uncharacterized protein OS=Sus scrofa GN=COX5A PE=1 SV=1 F1SJ34_PIG 0 3 14

Page 17: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa

GN=CYB5R3 PE=1 SV=2 F1SJQ5_PIG (+1) 0 0 14

Uncharacterized protein OS=Sus scrofa GN=SERPINC1 PE=1 SV=1 F2Z5E2_PIG (+2) 0 13 0

Eukaryotic translation initiation factor 3 subunit L OS=Sus scrofa

GN=EIF3L PE=1 SV=2 F1SKN5_PIG 0 15 0

Uncharacterized protein OS=Sus scrofa GN=LAMC1 PE=1 SV=1 F1S663_PIG 0 0 15

Uncharacterized protein OS=Sus scrofa GN=SERPINA3-3 PE=1 SV=1 F1SCD0_PIG 6 4 5

Peroxiredoxin 2 OS=Sus scrofa GN=PRDX2 PE=1 SV=2 F1SDX9_PIG 7 5 4

Uncharacterized protein OS=Sus scrofa GN=RRBP1 PE=1 SV=1 I3LGC2_PIG 4 7 2

Uncharacterized protein OS=Sus scrofa GN=LOC100523874 PE=1 SV=1 F1SIT7_PIG 4 8 4

Uncharacterized protein OS=Sus scrofa GN=DIAPH1 PE=1 SV=2 F1RMT5_PIG 2 12 2

Transaldolase OS=Sus scrofa GN=TALDO1 PE=1 SV=2 F1RYY6_PIG 3 7 0

Uncharacterized protein OS=Sus scrofa GN=DARS PE=1 SV=1 F1S0D9_PIG 0 9 5

Clusterin OS=Sus scrofa GN=CLU PE=1 SV=1 CLUS_PIG 0 7 8

60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=1 SV=1 F1SJQ6_PIG (+1) 0 7 6

Aconitate hydratase, mitochondrial OS=Sus scrofa domesticus GN=ACO2

PE=3 SV=1 A0A0B8RTA5_PIG (+1) 7 0 8

UTP--glucose-1-phosphate uridylyltransferase OS=Sus scrofa GN=UGP2

PE=2 SV=3 UGPA_PIG 0 13 0

Nuclear matrix protein 200 OS=Sus scrofa GN=nmp-200 PE=1 SV=1 B2CCY7_PIG 0 8 8

Uncharacterized protein OS=Sus scrofa GN=NAP1L1 PE=1 SV=1 F1SGD7_PIG 0 4 12

Uncharacterized protein OS=Sus scrofa GN=PSMD2 PE=1 SV=1 I3LEW5_PIG 0 9 5

Eukaryotic initiation factor 4A-III OS=Sus scrofa GN=EIF4A3 PE=2

SV=1 IF4A3_PIG 0 8 15

MHC class II antigen OS=Sus scrofa GN=SLA-DRB PE=2 SV=1 Q8MHH2_PIG 0 5 8

Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial

OS=Sus scrofa GN=SUCLG1 PE=1 SV=2 SUCA_PIG 0 8 7

FK506 binding protein 4 OS=Sus scrofa GN=FKBP4 PE=2 SV=1 D3K5K2_PIG 0 12 2

Uncharacterized protein OS=Sus scrofa GN=ACTN2 PE=1 SV=1 F1RHL9_PIG 0 19 27

Uncharacterized protein OS=Sus scrofa GN=CTSC PE=1 SV=1 F1STR1_PIG 0 11 0

Uncharacterized protein OS=Sus scrofa GN=LOC100524613 PE=1 SV=2 F1RPD2_PIG 0 0 15

Isoform 2 of Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 AT2A2_PIG 0 0 16

Page 18: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

OS=Sus scrofa GN=ATP2A2

Signal transducer and activator of transcription OS=Sus scrofa GN=stat3

PE=2 SV=1 E7CR02_PIG (+2) 0 0 16

40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=1 SV=1 B6V8C7_PIG (+1) 3 7 4

Glutathione peroxidase OS=Sus scrofa PE=2 SV=1 A0A068F143_PIG 4 2 8

Uncharacterized protein OS=Sus scrofa GN=RPL18A PE=1 SV=2 F1S935_PIG 2 7 4

Uncharacterized protein OS=Sus scrofa GN=YWHAG PE=1 SV=1 F2Z4Z1_PIG 8 16 8

Superoxide dismutase OS=Sus scrofa GN=SOD2 PE=1 SV=1 F1SB60_PIG 5 7 3

Uncharacterized protein OS=Sus scrofa GN=TUBB4B PE=1 SV=1 F2Z571_PIG 0 32 65

Uncharacterized protein OS=Sus scrofa GN=DHX15 PE=1 SV=1 F1S5A8_PIG 0 5 9

Uncharacterized protein OS=Sus scrofa GN=USP5 PE=1 SV=2 F1SLU6_PIG 0 7 7

RHOG OS=Sus scrofa PE=2 SV=1 Q06AT6_PIG 0 8 7

Coronin OS=Sus scrofa GN=CORO1B PE=1 SV=2 F1RUX1_PIG 6 8 0

Inter-alpha-trypsin inhibitor heavy chain H2 OS=Sus scrofa GN=ITIH2

PE=2 SV=1 ITIH2_PIG 4 9 0

Uncharacterized protein OS=Sus scrofa GN=PRMT1 PE=1 SV=1 F1RHU6_PIG 0 11 0

Uncharacterized protein OS=Sus scrofa GN=MYL12B PE=1 SV=2 F1SM78_PIG (+1) 0 0 13

Galectin OS=Sus scrofa GN=LGALS3 PE=1 SV=1 A3EX84_PIG 0 5 9

Dyskeratosis congenita 1 OS=Sus scrofa GN=DKC1 PE=2 SV=1 B7TJ11_PIG (+1) 0 6 9

Uncharacterized protein OS=Sus scrofa GN=RBMX PE=1 SV=1 F1RQ90_PIG (+1) 0 6 6

Uncharacterized protein OS=Sus scrofa GN=TPR PE=1 SV=2 F1S300_PIG 0 4 8

Dihydrolipoyl dehydrogenase OS=Sus scrofa GN=DLD PE=1 SV=1 F1SAF0_PIG 0 9 6

Uncharacterized protein OS=Sus scrofa GN=KRT8 PE=1 SV=1 F1SGG2_PIG 5 0 16

Tyrosine-protein kinase OS=Sus scrofa GN=CSK PE=1 SV=2 F1SJ27_PIG 0 8 6

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SF3B1 PE=1

SV=2 F1SMZ9_PIG 0 8 7

ATP-dependent 6-phosphofructokinase OS=Sus scrofa GN=PFKP_tv1

PE=2 SV=1 K9J4R6_PIG 0 11 4

Cytoplasmic FMR1 interacting protein 1 tv1 OS=Sus scrofa GN=CYFIP1

tv1 PE=2 SV=1 M3V7Z1_PIG 0 8 4

Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV=1 PPCE_PIG 3 10 0

Page 19: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=1 SV=1 RL23_PIG 0 7 8

40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=1 SV=3 RS17_PIG 0 8 7

Mitogen-activated protein kinase OS=Sus scrofa GN=ERK2 PE=2 SV=1 E3UV40_PIG (+1) 0 11 2

NOP58 ribonucleoprotein OS=Sus scrofa domesticus GN=NOP58 PE=4

SV=1 A0A0B8RSI3_PIG 0 2 13

Uncharacterized protein OS=Sus scrofa GN=CTNND1 PE=1 SV=2 F1SJY6_PIG 0 2 12

Uncharacterized protein OS=Sus scrofa GN=MNDA PE=4 SV=2 F1RND9_PIG 0 0 11

Histone H3 OS=Sus scrofa GN=HIST1H3G PE=2 SV=1 F2Z576_PIG 0 0 20

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LIQ9_PIG 0 0 14

Uncharacterized protein OS=Sus scrofa GN=CTNNA1 PE=1 SV=2 F1RGJ2_PIG 0 0 14

Uncharacterized protein OS=Sus scrofa GN=KRT15 PE=1 SV=1 F1S0K2_PIG 0 0 24

Uncharacterized protein OS=Sus scrofa GN=NID2 PE=1 SV=2 F1SFF3_PIG 0 0 15

Leucocyte antigen 2/2(SLA-2/2) OS=Sus scrofa GN=SLA-2 PE=3 SV=1 Q9TSW1_PIG (+1) 0 0 15

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RAB7A PE=1

SV=2 F1SPG0_PIG 3 8 3

Uncharacterized protein OS=Sus scrofa GN=EHD2 PE=1 SV=1 I3LD72_PIG 2 6 5

Uncharacterized protein OS=Sus scrofa GN=LOC100523526 PE=3 SV=1 F2Z512_PIG (+1) 2 7 5

Uncharacterized protein OS=Sus scrofa GN=RPL30 PE=1 SV=1 F2Z554_PIG 2 7 5

Uncharacterized protein OS=Sus scrofa GN=ACAT1 PE=1 SV=1 I3LP02_PIG 2 7 5

Uncharacterized protein OS=Sus scrofa GN=MZB1 PE=1 SV=1 F1RGG8_PIG 2 10 2

Splicing factor 3A subunit 1 OS=Sus scrofa GN=SF3A1 PE=1 SV=1 F1RFD3_PIG (+1) 2 7 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=HNRNPD PE=1

SV=1 F1RVC9_PIG 2 7 5

Leucine-rich repeat flightless-interacting protein 1 OS=Sus scrofa

domesticus GN=FLII PE=4 SV=1 A0A0B8RTP4_PIG 0 6 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PSMC3 PE=1

SV=1 F1SID4_PIG 0 7 6

Uncharacterized protein OS=Sus scrofa GN=OGDH PE=1 SV=2 F1SSH8_PIG (+1) 0 4 6

Proteasome subunit alpha type OS=Sus scrofa GN=PSMA4 PE=1 SV=1 F2Z528_PIG 0 10 3

Uncharacterized protein OS=Sus scrofa GN=MVP PE=1 SV=1 I3LQ79_PIG 0 8 4

Annexin A4 OS=Sus scrofa GN=ANXA4 PE=1 SV=2 ANXA4_PIG (+2) 0 2 10

Page 20: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=ATP6V1B2 PE=1 SV=1 F1RMZ8_PIG 0 11 2

Uncharacterized protein OS=Sus scrofa GN=LOC100737606 PE=1 SV=1 F1SB57_PIG (+1) 0 2 11

Proteasome subunit alpha type OS=Sus scrofa GN=PSMA6 PE=1 SV=1 F2Z5N0_PIG 5 8 0

Proteasome subunit alpha type OS=Sus scrofa GN=PSMA2 PE=1 SV=1 I3LAB6_PIG 4 9 0

6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Sus

scrofa GN=PGD PE=1 SV=2 F1RIF8_PIG 4 6 0

Uncharacterized protein OS=Sus scrofa GN=PRKCSH PE=1 SV=1 F1S596_PIG 0 8 3

Adaptor-related protein complex 2, mu 1 subunit OS=Sus scrofa

domesticus GN=AP2M1 PE=4 SV=1 A0A0B8RTX5_PIG (+1) 0 5 4

Thioredoxin domain-containing 4 OS=Sus scrofa GN=TXNDC4 PE=2

SV=1 B6CVD6_PIG 0 9 4

Growth factor receptor bound protein 2 OS=Sus scrofa GN=GRB2 PE=1

SV=1 B6E241_PIG 0 8 3

Uncharacterized protein OS=Sus scrofa GN=COX6B PE=1 SV=2 F1RLH7_PIG 0 4 9

Annexin OS=Sus scrofa GN=ANXA11 PE=1 SV=2 F1S2E2_PIG 0 3 11

Uncharacterized protein OS=Sus scrofa GN=LOC100157249 PE=1 SV=2 F1SAS3_PIG 0 3 11

Uncharacterized protein OS=Sus scrofa GN=CALD1 PE=1 SV=1 I3L7S4_PIG 0 6 3

U2 small nuclear RNA auxiliary factor 2 OS=Sus scrofa GN=U2AF2 PE=2

SV=1 I3W8V7_PIG 0 6 7

High density lipoprotein binding protein OS=Sus scrofa domesticus

GN=HDLBP PE=4 SV=1 A0A0B8S073_PIG (+1) 0 2 12

Uncharacterized protein OS=Sus scrofa GN=LOC100624528 PE=4 SV=2 F1S895_PIG (+1) 0 2 11

Uncharacterized protein OS=Sus scrofa GN=NDUFS1 PE=1 SV=2 F1SHD7_PIG 0 0 12

Uncharacterized protein OS=Sus scrofa GN=IMMT PE=1 SV=1 I3LSM7_PIG 0 0 10

Sad1 and UNC84 domain containing 2 OS=Sus scrofa domesticus

GN=SUN2 PE=4 SV=1 A0A0B8RT38_PIG (+1) 0 0 14

HUMMLC2B OS=Sus scrofa GN=HUMMLC2B PE=2 SV=1 A1XQT5_PIG (+2) 0 0 13

Calponin-2 (Fragment) OS=Sus scrofa GN=CNN2 PE=2 SV=1 CNN2_PIG (+1) 3 5 5

Uncharacterized protein OS=Sus scrofa GN=C14orf166 PE=1 SV=1 F1SFF4_PIG 3 7 3

Uncharacterized protein OS=Sus scrofa GN=SEPT2 PE=1 SV=2 F1SIP0_PIG 3 5 5

Uncharacterized protein OS=Sus scrofa GN=EEF1D PE=1 SV=1 I3LT08_PIG 4 6 3

ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A OS=Sus scrofa A0A0B8S0B6_PIG (+1) 2 4 7

Page 21: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

domesticus GN=ATP6V1A PE=3 SV=1

Coronin (Fragment) OS=Sus scrofa GN=CORO1C PE=1 SV=2 F1RGA9_PIG 4 8 2

40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=1 SV=1 F1SPH5_PIG (+1) 2 3 5

TRA2B OS=Sus scrofa PE=2 SV=1 Q06AA7_PIG 2 2 7

Uncharacterized protein OS=Sus scrofa GN=ANP32B PE=1 SV=2 F1SSG6_PIG 0 14 3

Uncharacterized protein OS=Sus scrofa GN=SEPT6 PE=1 SV=3 F1RUA1_PIG (+3) 0 7 5

Uncharacterized protein OS=Sus scrofa GN=ACTR1A PE=1 SV=1 F2Z5G5_PIG 0 8 4

Uncharacterized protein OS=Sus scrofa GN=LOC100620305 PE=1 SV=1 I3LSK5_PIG 0 11 11

60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3 RL32_PIG 0 4 5

Uncharacterized protein (Fragment) OS=Sus scrofa PE=4 SV=3 A0A075B7H9_PIG 0 8 5

Suppression of tumorigenicity 13 (Colon carcinoma) (Hsp70 interacting

protein) OS=Sus scrofa domesticus GN=ST13 PE=4 SV=1 A0A0B8RVG5_PIG (+1) 3 8 0

Isoform Smooth muscle of Myosin light polypeptide 6 OS=Sus scrofa

GN=MYL6 MYL6_PIG 3 8 0

Biglycan (Fragment) OS=Sus scrofa GN=BGN PE=1 SV=1 F1S2B6_PIG (+1) 2 0 11

ERO1-like protein alpha OS=Sus scrofa GN=ERO1A PE=2 SV=1 ERO1A_PIG 0 11 0

Uncharacterized protein OS=Sus scrofa GN=API5 PE=1 SV=1 F1SHH7_PIG 0 9 0

Uncharacterized protein OS=Sus scrofa GN=IPO7 PE=1 SV=1 I3LDM3_PIG 0 11 0

Hepatoma-derived growth factor OS=Sus scrofa domesticus GN=HDGF

PE=4 SV=1 A0A0B8RSU5_PIG (+1) 0 8 4

Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa

GN=COX5B PE=2 SV=1 COX5B_PIG 0 3 10

Calpain small subunit 1 OS=Sus scrofa GN=CAPNS1 PE=1 SV=1 CPNS1_PIG 0 3 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=GVIN1 PE=1

SV=2 F1RMQ6_PIG 0 3 10

cAMP-dependent protein kinase catalytic subunit alpha OS=Sus scrofa

GN=PRKACA PE=1 SV=1 F1SD45_PIG (+1) 0 8 4

Uncharacterized protein OS=Sus scrofa GN=COL1A2 PE=1 SV=1 F1SFA7_PIG 0 3 10

Uncharacterized protein OS=Sus scrofa GN=LOC100526191 PE=1 SV=2 F1SP18_PIG 3 10 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=FBL PE=1 SV=1 I3L5T3_PIG 0 4 9

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0T7_PIG 22 47 0

Aldo-keto reductase family 1 member C4 OS=Sus scrofa GN=AKR1C4 Q1HE49_PIG (+1) 4 9 0

Page 22: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

PE=4 SV=1

Four and a half LIM domains 1 protein, isoform C OS=Sus scrofa

GN=fhl1C PE=1 SV=1 Q9GJV4_PIG 0 4 8

Uncharacterized protein OS=Sus scrofa GN=ATP5F1 PE=1 SV=1 F1SBN7_PIG 0 4 8

Uncharacterized protein OS=Sus scrofa GN=UBE2N PE=1 SV=2 F1SQ14_PIG (+1) 0 9 2

Isocitrate dehydrogenase [NADP] OS=Sus scrofa GN=IDH1 PE=1 SV=1 I3LDC7_PIG 0 9 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PNP PE=1 SV=2 F1S8H8_PIG 0 12 0

Uncharacterized protein OS=Sus scrofa GN=OLFML1 PE=1 SV=1 I3LNK1_PIG 0 0 12

Topoisomerase (DNA) I OS=Sus scrofa domesticus GN=TOP1 PE=4

SV=1 A0A0B8RT23_PIG (+2) 0 0 10

S-(hydroxymethyl)glutathione dehydrogenase OS=Sus scrofa GN=ADH5

PE=1 SV=1 F1S0C1_PIG 0 13 0

Fatty acid synthase OS=Sus scrofa GN=FASN PE=1 SV=1 A5YV76_PIG 6 2 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SYNCRIP PE=1

SV=2 F2Z5D4_PIG 5 15 5

Vascular cell adhesion molecule OS=Sus scrofa PE=2 SV=1 Q28939_PIG 2 4 6

Putative uncharacterized protein (Fragment) OS=Sus scrofa PE=2 SV=1 A7E1T5_PIG (+1) 7 3 2

Uncharacterized protein OS=Sus scrofa GN=ECHS1 PE=1 SV=2 F1SAC1_PIG 2 6 3

Uncharacterized protein OS=Sus scrofa GN=DBNL PE=1 SV=1 F1ST81_PIG 2 8 2

Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

OS=Sus scrofa GN=PPP2CA PE=2 SV=1 PP2AA_PIG 2 5 5

Prosaposin variant 1 OS=Sus scrofa GN=PSAP PE=2 SV=1 E3VVJ1_PIG (+3) 0 4 4

Uncharacterized protein OS=Sus scrofa GN=PDCD6IP PE=1 SV=2 F1RRD6_PIG 0 7 4

Heat shock 105kDa/110kDa protein 1 OS=Sus scrofa GN=Hsph1 PE=2

SV=1 A4UTN7_PIG (+1) 0 9 3

Proteasome subunit beta type OS=Sus scrofa domesticus GN=PSMB2

PE=3 SV=1 A0A0B8RVK4_PIG 3 7 0

Uncharacterized protein OS=Sus scrofa GN=PRPS2 PE=1 SV=2 F1SG10_PIG 3 7 0

UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1 KCY_PIG 4 7 0

Uncharacterized protein OS=Sus scrofa GN=GMDS PE=1 SV=2 F1RX12_PIG 2 9 0

Uncharacterized protein OS=Sus scrofa GN=SPR PE=1 SV=2 F1SLF0_PIG 2 8 0

Radixin OS=Sus scrofa GN=RDX PE=1 SV=2 F1SV14_PIG (+1) 0 8 0

Page 23: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Galectin OS=Sus scrofa GN=LGALS1 PE=1 SV=1 F1SKM9_PIG (+3) 7 0 0

Long palate lung and nasal epithelium protein 2 OS=Sus scrofa PE=2

SV=1 A7J150_PIG 6 5 0

Beta-2-microglobulin OS=Sus scrofa GN=B2M PE=1 SV=1 B2MG_PIG (+1) 0 4 7

Amine oxidase OS=Sus scrofa GN=AOC3 PE=1 SV=2 F1S1G8_PIG 0 5 7

Uncharacterized protein OS=Sus scrofa GN=FAM213A PE=1 SV=1 F1SEQ7_PIG 0 3 9

Uncharacterized protein (Fragment) OS=Sus scrofa GN=COPG1 PE=1

SV=2 F1SPF9_PIG 0 6 6

40S ribosomal protein S20 OS=Sus scrofa GN=RPS20 PE=1 SV=1 F2Z539_PIG (+1) 0 5 5

tRNA-splicing ligase RtcB homolog OS=Sus scrofa GN=RTCB PE=1

SV=1 F2Z5V0_PIG (+1) 0 7 5

FUS OS=Sus scrofa GN=FUS PE=1 SV=1 G8ENL4_PIG 0 5 7

SFRS6 OS=Sus scrofa GN=SRSF6 PE=1 SV=1 Q06AA0_PIG 0 4 2

Uncharacterized protein OS=Sus scrofa GN=SQRDL PE=1 SV=2 F1SN58_PIG 0 2 10

Uncharacterized protein OS=Sus scrofa GN=SARS PE=1 SV=2 F1S5Z3_PIG 2 9 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PGLS PE=1

SV=2 F1S956_PIG 0 11 0

Myosin-11 OS=Sus scrofa GN=MYH11 PE=1 SV=2 F1SKI0_PIG 0 0 21

Proteasome subunit alpha type OS=Sus scrofa GN=PSMA1 PE=1 SV=1 F2Z5L7_PIG 0 10 0

SWAP switching B-cell complex 70kDa subunit OS=Sus scrofa

domesticus GN=SWAP70 PE=4 SV=1 A0A0B8RVF9_PIG (+1) 0 11 0

DNA topoisomerase 2 OS=Sus scrofa GN=TOP2B PE=1 SV=2 F1RS45_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=SSRP1 PE=1 SV=1 I3LLA8_PIG 0 0 12

Uncharacterized protein OS=Sus scrofa GN=IL16 PE=4 SV=1 K7GNX8_PIG (+4) 3 5 3

Uncharacterized protein OS=Sus scrofa GN=NHP2L1 PE=1 SV=1 F2Z5V3_PIG 3 2 6

40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=1

SV=1 I3LEX0_PIG 2 3 4

Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa

GN=HADH PE=1 SV=2 HCDH_PIG 2 5 2

Eukaryotic translation initiation factor 3 subunit C OS=Sus scrofa

domesticus GN=EIF3C PE=3 SV=1 A0A0B8RZL4_PIG 0 7 2

Apolipoprotein E OS=Sus scrofa GN=APOE PE=1 SV=2 APOE_PIG (+1) 0 5 4

Page 24: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=LOC100519091 PE=4 SV=2 F1SKF9_PIG (+3) 0 5 4

AP complex subunit beta OS=Sus scrofa GN=AP1B1 PE=1 SV=2 F1RFI2_PIG 0 16 7

Uncharacterized protein OS=Sus scrofa GN=GSR PE=1 SV=2 F1RX66_PIG 3 6 0

Glutaredoxin OS=Sus scrofa GN=GRX1 PE=2 SV=1 F2XWZ9_PIG (+1) 4 5 0

Obg-like ATPase 1 OS=Sus scrofa GN=OLA1 PE=2 SV=1 K9IVP8_PIG 3 7 0

Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 1 OS=Sus

scrofa domesticus GN=PSMD1 PE=4 SV=1 A0A0B8RTB9_PIG 0 8 0

COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2

SV=1 CSN4_PIG 0 7 0

Moesin OS=Sus scrofa GN=MSN PE=1 SV=1 F1RTN3_PIG 10 0 0

Uncharacterized protein OS=Sus scrofa GN=AP2A1 PE=1 SV=1 F1RH60_PIG (+1) 0 3 7

DEK proto-oncogene OS=Sus scrofa domesticus GN=DEK PE=4 SV=1 A0A0B8RT07_PIG (+1) 0 3 7

MHC class II antigen OS=Sus scrofa GN=SLA-DQA PE=2 SV=1 A0A0G3Z8D5_PIG (+4) 0 4 7

Dynein, light chain, LC8-type 1 OS=Sus scrofa GN=LC8 PE=1 SV=1 D9U8D1_PIG (+1) 0 5 4

cAMP-dependent protein kinase type I-alpha regulatory subunit OS=Sus

scrofa GN=PRKAR1A PE=1 SV=1 F1RV23_PIG (+1) 0 7 4

Eukaryotic translation initiation factor 3 subunit E OS=Sus scrofa

GN=EIF3E PE=1 SV=2 F1S1G0_PIG 0 5 4

Uncharacterized protein OS=Sus scrofa GN=TPM2 PE=1 SV=1 F1SG00_PIG 0 15 10

Uncharacterized protein OS=Sus scrofa GN=SEC23A PE=1 SV=1 F1SHL3_PIG 0 6 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ARHGAP1 PE=1

SV=2 F1SIA4_PIG 0 5 6

Coatomer subunit gamma OS=Sus scrofa GN=COPG2 PE=1 SV=2 F1SNE9_PIG (+1) 0 5 6

Uncharacterized protein OS=Sus scrofa GN=RPL26 PE=1 SV=1 I3L7Y1_PIG 0 5 4

Uncharacterized protein OS=Sus scrofa GN=TNPO1 PE=1 SV=1 I3LM93_PIG 0 4 4

Translationally-controlled tumor protein OS=Sus scrofa GN=TPT1 PE=2

SV=1 TCTP_PIG 3 7 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LBH9_PIG 0 2 6

Atlastin GTPase 3 OS=Sus scrofa domesticus GN=ATL3 PE=4 SV=1 A0A0B8RTX1_PIG (+1) 0 2 8

Integrin alpha-L OS=Sus scrofa GN=ITGAL PE=1 SV=1 A8DNU5_PIG (+3) 0 2 7

Calcium-binding protein A9 OS=Sus scrofa GN=S100A9 PE=1 SV=1 C3S7K6_PIG 0 3 7

Adducin 1 (Alpha) OS=Sus scrofa GN=ADD1 PE=1 SV=2 F1S8P9_PIG 0 3 6

Page 25: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Osteoclast-stimulating factor 1 OS=Sus scrofa GN=OSTF1 PE=2 SV=1 OSTF1_PIG 0 8 2

Microtubule-associated protein RP/EB family member 1 OS=Sus scrofa

GN=MAPRE1 PE=1 SV=1 Q2XVP5_PIG 0 8 2

Uncharacterized protein OS=Sus scrofa GN=KRT19 PE=1 SV=1 F1S0J8_PIG 2 0 15

Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 3 OS=Sus

scrofa domesticus GN=PSMD3 PE=4 SV=1 A0A0B8RSC7_PIG (+1) 0 9 0

Guanylate binding protein 7 OS=Sus scrofa domesticus GN=GBP7 PE=4

SV=1 A0A0B8S081_PIG 0 10 0

von Willebrand factor OS=Sus scrofa GN=VWF PE=2 SV=1 F5XVC2_PIG (+1) 0 0 10

Dermatopontin OS=Sus scrofa GN=DPT PE=1 SV=2 DERM_PIG (+1) 0 0 11

Uncharacterized protein OS=Sus scrofa GN=NDUFV1 PE=1 SV=1 F1RVN1_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=SUPT16H PE=1 SV=1 F1S8K5_PIG 0 0 11

Promyelocytic leukemia OS=Sus scrofa GN=LOC100621916 PE=1 SV=1 F1SID1_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=LAMB2 PE=1 SV=2 F1SPT5_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=TPD52 PE=1 SV=2 F1RX99_PIG 3 4 3

60S ribosomal protein L35 OS=Sus scrofa GN=RPL35 PE=1 SV=3 RL35_PIG 3 3 4

Uncharacterized protein OS=Sus scrofa GN=KCTD12 PE=1 SV=1 F1RHE6_PIG 2 5 2

Uncharacterized protein OS=Sus scrofa GN=LOC100512659 PE=1 SV=2 F1S419_PIG 0 4 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SEPT11 PE=1

SV=2 F1RYS5_PIG 0 9 7

Uncharacterized protein OS=Sus scrofa GN=LMAN2 PE=1 SV=1 F1S3D5_PIG 0 2 7

S-adenosylmethionine synthase OS=Sus scrofa GN=MATA2 PE=1 SV=1 D0G777_PIG 2 5 0

Uncharacterized protein OS=Sus scrofa PE=4 SV=1 A0A0C3SG01_PIG 8 0 0

6-phosphofructokinase OS=Sus scrofa GN=PFKL PE=1 SV=1 I3LFQ5_PIG 0 10 0

Ribosomal protein L28 OS=Sus scrofa domesticus GN=RPL28 PE=4

SV=1 A0A0B8RVJ2_PIG 0 4 5

APEX nuclease 1 OS=Sus scrofa GN=APEX1 PE=2 SV=1 B6VAP9_PIG (+1) 0 6 3

Farnesyl diphosphate synthase OS=Sus scrofa GN=FDPS PE=1 SV=1 D0G6X4_PIG 3 7 0

Chloride intracellular channel protein OS=Sus scrofa GN=CLIC2 PE=1

SV=1 F1RZR9_PIG 3 6 0

Uncharacterized protein OS=Sus scrofa GN=RALY PE=1 SV=1 F1S4Y9_PIG 0 4 6

Uncharacterized protein OS=Sus scrofa GN=TWF2 PE=1 SV=1 F1SIX7_PIG 3 5 0

Page 26: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=SERPINB5 PE=3 SV=1 F1SMW3_PIG 3 6 0

Uncharacterized protein OS=Sus scrofa GN=CBX3 PE=1 SV=2 F1ST98_PIG 0 4 6

Uncharacterized protein OS=Sus scrofa GN=DDX21 PE=1 SV=2 F1SUG7_PIG (+1) 0 3 7

Fatty acid-binding protein, adipocyte OS=Sus scrofa GN=FABP4 PE=1

SV=3 FABP4_PIG (+1) 5 5 0

Uncharacterized protein OS=Sus scrofa GN=RAD23B PE=1 SV=1 F1SP32_PIG 0 6 4

Uncharacterized protein OS=Sus scrofa GN=MYO1G PE=1 SV=2 F1ST46_PIG 0 3 7

Uncharacterized protein OS=Sus scrofa GN=HARS PE=1 SV=1 F1RGD9_PIG 2 8 0

Uncharacterized protein OS=Sus scrofa GN=ATP5L PE=1 SV=1 F1SAK6_PIG 0 2 8

Prothrombin OS=Sus scrofa GN=F2 PE=1 SV=2 F1SIB1_PIG 2 7 0

40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=1 SV=2 RS15_PIG 0 4 6

Uncharacterized protein OS=Sus scrofa GN=SEC61A1 PE=1 SV=1 F2Z5S3_PIG 0 2 7

Histone H2A OS=Sus scrofa GN=H2A.Z PE=2 SV=1 B1PEY3_PIG (+1) 0 0 12

Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa GN=FKBP11 PE=1

SV=1 F1SPN1_PIG 0 0 9

Tenascin OS=Sus scrofa GN=TNC PE=1 SV=1 TENA_PIG 0 0 9

Acyl-CoA-binding protein OS=Sus scrofa GN=DBI PE=1 SV=2 ACBP_PIG 0 9 0

Uncharacterized protein OS=Sus scrofa GN=PLS3 PE=1 SV=2 F1RWT2_PIG (+1) 0 25 0

Uncharacterized protein OS=Sus scrofa GN=PPA1 PE=1 SV=2 F1SUE3_PIG 0 9 0

Protein S100 OS=Sus scrofa GN=S100A8 PE=1 SV=1 C3S7K5_PIG (+1) 0 0 8

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LCX2_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=NARS PE=1 SV=2 F1S1X3_PIG 0 8 0

Sterol O-acyltransferase 2 OS=Sus scrofa domesticus GN=ACAT2 PE=3

SV=1 A0A0B8RZS7_PIG (+1) 0 8 0

Uncharacterized protein OS=Sus scrofa GN=HINT1 PE=1 SV=1 F1RKI3_PIG 0 10 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100737483

PE=1 SV=2 F1SGG9_PIG 0 0 27

Uncharacterized protein OS=Sus scrofa GN=TTLL12 PE=1 SV=2 F1SJR7_PIG 0 8 0

Uncharacterized protein OS=Sus scrofa GN=CKAP4 PE=1 SV=2 F1SPP8_PIG 0 0 9

Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1

SV=2 GSTO1_PIG 0 8 0

Page 27: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ARSF PE=4

SV=1 I3LRN8_PIG 0 0 10

Solute carrier family 25 (Aspartate/glutamate carrier), member 12 OS=Sus

scrofa GN=SLC25A12 PE=2 SV=1 M3VK21_PIG 0 0 10

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ERP29 PE=1

SV=1 F1RJM2_PIG 2 4 3

Uncharacterized protein OS=Sus scrofa GN=PSMC6 PE=1 SV=1 F1SFE6_PIG 2 4 3

Uncharacterized protein OS=Sus scrofa GN=LOC100627689 PE=1 SV=1 I3LD43_PIG 3 4 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PSMD11 PE=1

SV=1 F1RKW8_PIG 3 4 2

Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1

SV=3 MIF_PIG 2 4 2

Uncharacterized protein OS=Sus scrofa GN=JCHAIN PE=1 SV=1 F1RUQ0_PIG 3 4 2

Uncharacterized protein OS=Sus scrofa GN=ANP32E PE=1 SV=2 F1SDG7_PIG 4 5 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RPL24 PE=1

SV=2 F2Z5Q2_PIG 2 4 3

Uncharacterized protein OS=Sus scrofa GN=LOC100154750 PE=1 SV=1 K7GNZ3_PIG 0 4 3

Eukaryotic translation initiation factor 2 subunit 3 OS=Sus scrofa

GN=EIF2S3 PE=4 SV=2 F1SPY4_PIG 0 4 3

Uncharacterized protein OS=Sus scrofa GN=RPS27A PE=1 SV=1 F2Z5U0_PIG 0 4 4

Uncharacterized protein OS=Sus scrofa GN=TUBA4A PE=1 SV=1 F2Z5S8_PIG 0 30 42

Uncharacterized protein OS=Sus scrofa GN=BUB3 PE=1 SV=2 F2Z5F3_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100518254 PE=1 SV=2 F1RGG1_PIG 2 6 0

Uncharacterized protein OS=Sus scrofa GN=INPP5D PE=4 SV=2 F1SM44_PIG 2 6 0

Proteasome subunit beta type OS=Sus scrofa GN=PSMB10 PE=2 SV=1 Q09YA9_PIG (+1) 2 5 0

Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1 I3LPP1_PIG 3 0 4

Uncharacterized protein OS=Sus scrofa GN=PPID PE=1 SV=1 F1RTY6_PIG 0 7 0

Uncharacterized protein OS=Sus scrofa GN=LOC100620726 PE=1 SV=1 F1SMX5_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=NUDC PE=1 SV=1 F1STR6_PIG 0 6 0

Catechol-O-methyltransferase OS=Sus scrofa GN=COMT PE=2 SV=1 D3K5L3_PIG (+1) 6 0 0

Uncharacterized protein OS=Sus scrofa GN=PAFAH1B2 PE=1 SV=1 F2Z5V4_PIG 2 6 0

Alpha-2-HS-glycoprotein (Fragment) OS=Sus scrofa GN=AHSG PE=1 F1SFI7_PIG 3 0 2

Page 28: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

SV=2

Ribosomal L1 domain containing 1 OS=Sus scrofa domesticus

GN=RSL1D1 PE=4 SV=1 A0A0B8RSA8_PIG (+1) 0 3 6

Ubiquitin-conjugating enzyme E2L 3 OS=Sus scrofa GN=UBE2L3 PE=1

SV=1 B8Y648_PIG 0 5 3

Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3 CBR1_PIG (+1) 6 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100517228

PE=1 SV=2 F1RGC0_PIG (+1) 0 6 3

Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa GN=USP7 PE=1

SV=2 F1RKZ6_PIG 0 4 5

Uncharacterized protein OS=Sus scrofa GN=PSPC1 PE=1 SV=2 F1RN28_PIG 0 5 4

Uncharacterized protein OS=Sus scrofa GN=PDLIM5 PE=1 SV=2 F1RWW4_PIG 0 3 6

Uncharacterized protein OS=Sus scrofa GN=CPNE3 PE=1 SV=1 F1RXD5_PIG 0 3 5

Uncharacterized protein OS=Sus scrofa GN=PDHB PE=1 SV=1 F1SGH5_PIG 0 4 4

Microtubule-associated protein OS=Sus scrofa GN=MAP4 PE=1 SV=2 F1SLI3_PIG 0 4 5

Acetyltransferase component of pyruvate dehydrogenase complex OS=Sus

scrofa GN=DLAT PE=1 SV=2 F1SMB2_PIG (+1) 0 3 6

Y box binding protein 1 (Fragment) OS=Sus scrofa GN=YBX1 PE=2

SV=1 G8FUN5_PIG 0 4 4

Protein S100 OS=Sus scrofa GN=S100B PE=1 SV=1 I3L5R6_PIG 0 6 3

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LIK6_PIG 0 14 12

Uncharacterized protein OS=Sus scrofa GN=TARDBP PE=1 SV=1 I3LNA4_PIG 0 3 6

ADP-ribosylation factor 4 OS=Sus scrofa GN=ARF4 PE=1 SV=1 Q56P20_PIG 0 8 9

Vesicle-associated membrane protein-associated protein B OS=Sus scrofa

GN=VAPB PE=3 SV=1 VAPB_PIG 0 3 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100152327

PE=1 SV=5 A0A075B7I9_PIG 0 6 2

Leucyl/cystinyl aminopeptidase OS=Sus scrofa domesticus GN=LNPEP

PE=4 SV=1 A0A0B8RTI6_PIG (+2) 0 2 7

Uncharacterized protein OS=Sus scrofa GN=PSIP1 PE=1 SV=2 F1SMR3_PIG 0 3 8

Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=1 SV=1 F2Z5N8_PIG (+1) 3 8 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LAA4_PIG 0 2 7

Page 29: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=HUWE1 PE=1 SV=1 K7GNJ7_PIG (+2) 0 5 2

Nicotinate phosphoribosyltransferase domain containing 1 OS=Sus scrofa

GN=NAPRT1 PE=2 SV=1 M3TYR7_PIG 0 5 2

Beta-galactosidase OS=Sus scrofa domesticus GN=GLB1 PE=3 SV=1 A0A0B8S080_PIG 0 7 2

Transferrin receptor protein OS=Sus scrofa GN=TFRC PE=1 SV=1 D7RK08_PIG (+1) 0 0 6

Phosphatidylinositol-binding clathrin assembly protein OS=Sus scrofa

GN=PICALM PE=2 SV=1 F8T0U2_PIG 0 7 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=HIP1R PE=1

SV=2 F1REX8_PIG 0 6 0

Myotrophin OS=Sus scrofa GN=MTPN PE=2 SV=1 K9IVW4_PIG 0 7 0

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0S2_PIG 0 18 0

Hypoxanthine-guanine phosphoribosyltransferase 1 OS=Sus scrofa

GN=HPRT1 PE=4 SV=1 B0LXK8_PIG (+1) 0 8 0

Cytochrome c oxidase subunit 2 OS=Sus scrofa domesticus GN=COX2

PE=3 SV=1 A0A076E9V3_PIG (+16) 0 0 6

Mitochondrial 2-oxoglutarate/malate carrier protein OS=Sus scrofa

domesticus GN=SLC25A11 PE=3 SV=1 A0A0B8RT73_PIG (+1) 0 0 8

Glycerol-3-phosphate dehydrogenase OS=Sus scrofa GN=MGPD PE=1

SV=2 F1RPU0_PIG (+1) 0 0 8

Uncharacterized protein OS=Sus scrofa GN=ALDH3A2 PE=1 SV=2 F1SDC7_PIG 0 0 9

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NDUFA6 PE=4

SV=1 F1SJP6_PIG 0 0 7

Small calcium-binding mitochondrial carrier 1 OS=Sus scrofa

GN=SCAMC-1 PE=2 SV=1 B2MUB6_PIG (+1) 0 0 7

Valyl-tRNA synthetase OS=Sus scrofa GN=VARS PE=2 SV=1 B9TSR5_PIG 0 8 0

Carbonic anhydrase 3 OS=Sus scrofa GN=CA3 PE=2 SV=3 CAH3_PIG 0 9 0

Uncharacterized protein OS=Sus scrofa GN=COL4A1 PE=1 SV=2 F1RLM1_PIG (+1) 0 0 9

Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Sus scrofa

GN=UQCRFS1 PE=1 SV=1 F1RNZ1_PIG 0 0 8

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LAMA4 PE=1

SV=2 F1RZM4_PIG 0 0 7

Uncharacterized protein OS=Sus scrofa GN=GARS PE=1 SV=1 F1SII4_PIG 0 9 0

Page 30: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=RUVBL1 PE=1 SV=1 I3L742_PIG 0 0 9

Uncharacterized protein OS=Sus scrofa GN=GDI1 PE=1 SV=1 I3L893_PIG 0 9 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ALDH4A1 PE=1

SV=1 I3LNB4_PIG 0 8 0

DNA helicase OS=Sus scrofa GN=MCM6 PE=2 SV=1 M3TYJ4_PIG 0 8 0

Procollagen alpha 2(V) OS=Sus scrofa GN=COL5A2 PE=2 SV=1 Q59IP2_PIG 0 0 9

Capping protein (Actin filament) muscle Z-line, alpha 2 OS=Sus scrofa

domesticus GN=CAPZA2 PE=4 SV=1 A0A0B8RZQ2_PIG (+3) 4 8 5

Uncharacterized protein OS=Sus scrofa GN=NUCB1 PE=1 SV=2 F1RIP6_PIG 2 4 2

Uncharacterized protein OS=Sus scrofa GN=PTGES3 PE=1 SV=3 F1SL99_PIG 2 2 3

Uncharacterized protein OS=Sus scrofa GN=CNPY2 PE=1 SV=1 F1SLY7_PIG 2 4 2

Histone H2B OS=Sus scrofa GN=HIST1H2BK PE=1 SV=1 F2Z578_PIG (+5) 3 9 22

Adenylate kinase 2, mitochondrial OS=Sus scrofa GN=AK2 PE=1 SV=1 I3LSI3_PIG 0 5 3

AP-2 complex subunit alpha-2 isoform 1 OS=Sus scrofa GN=AP2A2

PE=2 SV=1 K9J6K8_PIG 0 5 4

Uncharacterized protein OS=Sus scrofa GN=LOC100522848 PE=1 SV=1 F1RU33_PIG 0 2 3

Cytosol aminopeptidase OS=Sus scrofa GN=LAP3 PE=1 SV=1 I3LTR9_PIG 0 5 2

Uncharacterized protein OS=Sus scrofa GN=CARKD PE=1 SV=1 I3LS60_PIG 2 5 0

GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1 SAR1A_PIG 0 0 4

Bridging integrator 1 OS=Sus scrofa PE=2 SV=1 A1EAJ7_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=AARS PE=1 SV=2 F1S431_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=HSPA2 PE=1 SV=1 F1SA70_PIG 20 0 0

Leukocyte surface antigen CD47 (Fragment) OS=Sus scrofa GN=CD47

PE=1 SV=2 F1SL37_PIG 2 0 0

Ubiquitin-conjugating enzyme E2 D2 (Fragment) OS=Sus scrofa

GN=UBE2D2 PE=1 SV=2 F1S105_PIG 3 0 4

GNAS complex locus OS=Sus scrofa GN=GNAS PE=1 SV=1 A5GFU0_PIG (+6) 0 6 5

cAMP-dependent protein kinase regulatory subunit type II alpha OS=Sus

scrofa GN=PRKAR2A PE=1 SV=1 C1PIG4_PIG 0 5 3

Isocitrate dehydrogenase [NAD] subunit, mitochondrial OS=Sus scrofa

GN=IDH3A PE=1 SV=1 F1RKU0_PIG 0 4 4

Uncharacterized protein OS=Sus scrofa GN=NAP1L4 PE=1 SV=2 F1RYA4_PIG 0 6 4

Page 31: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Protein S100 (Fragment) OS=Sus scrofa GN=LOC100621379 PE=1 SV=1 F1SFV5_PIG (+2) 0 4 4

Uncharacterized protein OS=Sus scrofa GN=ZYX PE=1 SV=1 F1SRV9_PIG 0 4 4

Eukaryotic translation initiation factor 3 subunit I OS=Sus scrofa

GN=EIF3I PE=1 SV=2 F1SV90_PIG 0 5 3

Uncharacterized protein OS=Sus scrofa GN=RPL38 PE=1 SV=1 F2Z568_PIG 0 4 3

Pyruvate dehydrogenase E1 component subunit alpha OS=Sus scrofa

GN=PDHA1 PE=1 SV=1 I3LCI2_PIG (+1) 0 4 3

Uncharacterized protein OS=Sus scrofa GN=LOC100739434 PE=1 SV=1 I3LP11_PIG 0 5 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ALDH1A1 PE=1

SV=1 I3LRS5_PIG 3 4 0

Uncharacterized protein OS=Sus scrofa GN=SNRNP70 PE=1 SV=1 I3LNE5_PIG 0 5 2

GTP:AMP phosphotransferase AK3, mitochondrial OS=Sus scrofa

GN=AK3 PE=1 SV=1 F1SK45_PIG 0 4 3

Minor histocompatibility protein HA-1 OS=Sus scrofa GN=HMHA1 PE=2

SV=1 K9IVJ2_PIG 0 4 3

Surfeit 4 OS=Sus scrofa domesticus GN=SURF4 PE=4 SV=1 A0A0B8RZ29_PIG 0 2 6

Long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus

scrofa GN=ACADL PE=2 SV=1 ACADL_PIG 0 6 2

Calpastatin OS=Sus scrofa GN=CAST PE=4 SV=1 B5L0Y2_PIG (+7) 0 5 3

N-acetylneuraminic acid synthase OS=Sus scrofa GN=NANS PE=2 SV=1 D0G780_PIG (+1) 2 5 0

Uncharacterized protein OS=Sus scrofa GN=GLOD4 PE=1 SV=2 F1RHJ9_PIG 2 6 0

Uncharacterized protein OS=Sus scrofa GN=G3BP1 PE=1 SV=2 F1RQB6_PIG 0 5 3

Uncharacterized protein OS=Sus scrofa GN=SF1 PE=1 SV=2 F1RQR0_PIG 0 6 2

60S ribosomal protein L21 OS=Sus scrofa GN=RPL21 PE=1 SV=2 F1RTJ9_PIG 0 4 3

Thimet oligopeptidase OS=Sus scrofa GN=THOP1 PE=1 SV=2 F1S8G5_PIG (+1) 2 6 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100516774

PE=1 SV=2 F1SNK3_PIG 2 6 0

Uncharacterized protein OS=Sus scrofa GN=YWHAH PE=1 SV=1 F2Z4Y1_PIG 7 15 0

Transcription factor BTF3 (Fragment) OS=Sus scrofa GN=BTF3 PE=1

SV=2 F2Z5H8_PIG 0 5 2

Proteasome subunit alpha type OS=Sus scrofa GN=PSMA5 PE=1 SV=1 F2Z5K2_PIG 0 6 2

Eukaryotic translation initiation factor 4 gamma 1 OS=Sus scrofa F8TEL5_PIG (+1) 0 5 2

Page 32: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

GN=EIF4G1 PE=2 SV=1

Uncharacterized protein OS=Sus scrofa GN=USP39 PE=1 SV=1 I3LFS1_PIG 0 5 3

Proteasome subunit beta type OS=Sus scrofa GN=PSMB1 PE=1 SV=1 I3LQ51_PIG 2 6 0

Uncharacterized protein OS=Sus scrofa GN=SNX3 PE=1 SV=2 F1RT25_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=SRI PE=1 SV=1 F1S340_PIG 0 0 5

Thymosin beta-4 OS=Sus scrofa GN=TMSB4X PE=4 SV=1 B3XXC3_PIG (+2) 0 5 0

X-prolyl aminopeptidase (Aminopeptidase P) 1, soluble OS=Sus scrofa

GN=XPNPEP1 PE=2 SV=1 K9IVF7_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=CCAR2 PE=1 SV=1 F1RMA3_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=RAB21 PE=1 SV=1 F1SH25_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=PACSIN2 PE=1 SV=1 F1SJR5_PIG 0 5 0

Nucleoside diphosphate kinase OS=Sus scrofa GN=NME1 PE=1 SV=1 F6PVJ7_PIG 0 11 0

Eukaryotic translation initiation factor 3 subunit B OS=Sus scrofa

GN=EIF3B PE=2 SV=1 M3TYC1_PIG 0 6 0

m7GpppX diphosphatase OS=Sus scrofa GN=DCPS PE=2 SV=1 DCPS_PIG 0 7 0

Eukaryotic translation initiation factor 3 subunit M OS=Sus scrofa

GN=EIF3M PE=1 SV=1 F1SGR0_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=ACSF2 PE=1 SV=2 F1RT96_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=NDUFV3 PE=1 SV=1 I3LRR4_PIG 0 0 6

Tyrosine-protein kinase SYK OS=Sus scrofa GN=SYK PE=1 SV=1 KSYK_PIG 0 0 7

Histone H1.3-like protein OS=Sus scrofa GN=HIST1H1D PE=1 SV=1 Q53DY5_PIG (+1) 0 0 15

Uncharacterized protein OS=Sus scrofa GN=PPL PE=1 SV=2 F1RK90_PIG 0 0 6

Transmembrane emp24 domain-containing protein 10 OS=Sus scrofa

domesticus GN=TMED10 PE=3 SV=1 A0A0B8RS75_PIG (+1) 0 0 7

Cathepsin Z OS=Sus scrofa GN=CTSZ PE=1 SV=1 A5GFX7_PIG 0 7 0

Cytochrome c OS=Sus scrofa GN=CYCS PE=1 SV=2 CYC_PIG 0 7 0

Hydroxysteroid (17-beta) dehydrogenase 12 (Fragment) OS=Sus scrofa

GN=HSD17B12 PE=2 SV=1 D0G6Y0_PIG 0 0 8

Uncharacterized protein OS=Sus scrofa GN=TCEA1 PE=1 SV=2 F1RSG8_PIG 0 8 0

Uncharacterized protein OS=Sus scrofa GN=LAMB3 PE=4 SV=2 F1SF45_PIG (+1) 0 0 8

Beta-hexosaminidase OS=Sus scrofa GN=HEXA PE=1 SV=1 F1SI88_PIG 0 8 0

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Uncharacterized protein OS=Sus scrofa GN=LOC100524622 PE=1 SV=2 F1SL07_PIG 0 0 8

Uncharacterized protein OS=Sus scrofa GN=LOC100525869 PE=1 SV=1 I3LCI0_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=EEF1B2 PE=1 SV=1 F1SHD6_PIG 2 3 2

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1SME6_PIG 2 3 2

60S ribosomal protein L22 OS=Sus scrofa GN=RPL22 PE=1 SV=2 RL22_PIG 2 3 2

Uncharacterized protein OS=Sus scrofa GN=LOC100739488 PE=1 SV=1 F1SQM6_PIG 2 2 2

Ribosomal protein L15 OS=Sus scrofa GN=LOC100620439 PE=1 SV=1 I3LK33_PIG 3 0 0

60S ribosomal protein L18 OS=Sus scrofa GN=RPL18 PE=1 SV=1 I3L6F1_PIG (+1) 0 3 3

Niban-like protein 1 OS=Sus scrofa domesticus GN=FAM129B PE=4

SV=1 A0A0B8RSY4_PIG 0 3 2

Uncharacterized protein OS=Sus scrofa GN=DAZAP1 PE=1 SV=1 I3LB68_PIG 0 4 2

40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=1 SV=1 RS21_PIG 0 2 4

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0W0_PIG 0 43 19

Kinesin-like protein OS=Sus scrofa GN=KIF5B PE=1 SV=1 F1RWC5_PIG (+1) 0 3 2

Cathepsin D OS=Sus scrofa PE=2 SV=1 Q4U1U4_PIG (+1) 2 3 0

Adseverin OS=Sus scrofa GN=SCIN PE=1 SV=2 F1SF64_PIG 0 3 0

Catalase OS=Sus scrofa GN=CAT PE=1 SV=1 F1SGS9_PIG 4 0 2

Electron transfer flavoprotein subunit beta OS=Sus scrofa GN=ETFB

PE=2 SV=3 ETFB_PIG 0 5 0

Lysine--tRNA ligase OS=Sus scrofa GN=KARS PE=1 SV=2 F1S458_PIG 0 2 0

Eukaryotic translation initiation factor 3 subunit J OS=Sus scrofa

GN=EIF3J PE=1 SV=1 F1SN05_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1STC3_PIG 0 3 0

60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=1 SV=1 I3LD74_PIG 0 0 3

Acetyl-coenzyme A synthetase OS=Sus scrofa GN=ACSS1 PE=1 SV=2 F1SAS2_PIG 0 4 2

Cathepsin S OS=Sus scrofa domesticus GN=CTSS PE=3 SV=1 A0A0B8S098_PIG (+1) 0 4 2

N-myc downstream regulated 1 OS=Sus scrofa domesticus GN=NDRG1

PE=4 SV=1 A0A0B8RSJ1_PIG 0 4 3

Ectonucleotide pyrophosphatase/phosphodiesterase family member 6

OS=Sus scrofa GN=ENPP6 PE=2 SV=2 ENPP6_PIG (+1) 0 3 4

Uncharacterized protein OS=Sus scrofa GN=LPO PE=1 SV=2 F1RRP2_PIG 4 3 0

Page 34: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein (Fragment) OS=Sus scrofa GN=GALK1 PE=1

SV=2 F1RVY7_PIG 0 3 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RNF213 PE=1

SV=1 F1RZA6_PIG 0 3 3

Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa GN=LOC100737887

PE=1 SV=1 F1S0A2_PIG 0 5 7

40S ribosomal protein S24 OS=Sus scrofa GN=RPS24 PE=3 SV=2 F1S2E5_PIG (+2) 0 4 3

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=2 F1S9Y8_PIG 0 4 3

Uncharacterized protein OS=Sus scrofa GN=LOC100156325 PE=1 SV=1 F1SCC7_PIG 0 5 4

Uncharacterized protein OS=Sus scrofa GN=LOC100517435 PE=1 SV=1 F2Z5I5_PIG 0 3 3

MHC class II antigen OS=Sus scrofa GN=SLA-DRA PE=3 SV=1 G0KXR0_PIG (+5) 0 3 5

Uncharacterized protein OS=Sus scrofa GN=LOC100737818 PE=1 SV=1 I3LDQ9_PIG 0 3 3

UDP-glucose 6-dehydrogenase OS=Sus scrofa GN=UGDH PE=1 SV=1 I3LIM2_PIG 3 4 0

MHC class I antigen OS=Sus scrofa GN=SLA-1 PE=2 SV=1 Q8MHT5_PIG 0 10 11

Vitronectin OS=Sus scrofa GN=VTN PE=1 SV=1 VTNC_PIG 0 4 3

Uncharacterized protein OS=Sus scrofa GN=DNM2 PE=1 SV=2 F1S593_PIG 0 4 2

60S ribosomal protein L34 OS=Sus scrofa GN=RPL34 PE=1 SV=1 F2Z5B9_PIG (+1) 0 3 2

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LJS6_PIG 0 2 4

Eukaryotic translation initiation factor 4A isoform 2 OS=Sus scrofa

GN=EIF4A2 PE=1 SV=1 A6M930_PIG 6 14 0

Uncharacterized protein OS=Sus scrofa GN=SF3A3 PE=1 SV=1 F1SV40_PIG 0 4 2

Mitochondrial complement component 1 Q subcomponent-binding protein

OS=Sus scrofa GN=C1QBP PE=2 SV=1 A0A0D5BWD2_PIG 0 2 5

ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1

PE=3 SV=1 ABCF1_PIG (+1) 0 5 2

Rho guanine nucleotide exchange factor 2 OS=Sus scrofa GN=ARHGEF2

PE=2 SV=1 ARHG2_PIG (+1) 0 2 4

Galectin OS=Sus scrofa GN=LGALS7 PE=2 SV=1 B7U2G7_PIG 0 2 5

Uncharacterized protein OS=Sus scrofa GN=USO1 PE=1 SV=2 F1RYU9_PIG 0 4 2

Uncharacterized protein OS=Sus scrofa GN=BCAP31 PE=1 SV=2 F1S2A8_PIG 0 2 4

Uncharacterized protein OS=Sus scrofa GN=ARL8B PE=1 SV=2 F1SFL1_PIG 0 2 5

Annexin OS=Sus scrofa GN=ANXA7 PE=1 SV=2 F1SU59_PIG (+1) 0 2 5

Page 35: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3L7T8_PIG 0 2 5

Uncharacterized protein OS=Sus scrofa GN=TPP1 PE=1 SV=1 I3L812_PIG 0 4 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=EIF6 PE=1 SV=1 I3L8I5_PIG 0 4 3

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LKQ2_PIG 0 5 2

Eukaryotic translation initiation factor 5 tv1 OS=Sus scrofa GN=EIF5

PE=2 SV=1 M3VK13_PIG 0 4 2

26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1 PRS8_PIG 0 5 2

Prenylcysteine oxidase 1 OS=Sus scrofa domesticus GN=PCYOX1 PE=4

SV=1 A0A0B8S035_PIG (+1) 0 0 5

Cytochrome c oxidase subunit 6C OS=Sus scrofa GN=COX6C PE=3

SV=1 COX6C_PIG (+1) 0 0 4

Uncharacterized protein OS=Sus scrofa GN=NIT2 PE=1 SV=2 F1SKY2_PIG 0 5 0

CDC37 cell division cycle 37 protein OS=Sus scrofa GN=CDC37 PE=1

SV=1 Q684M6_PIG 0 4 0

Serine/threonine-protein phosphatase 2A activator OS=Sus scrofa

GN=PPP2R4 PE=1 SV=2 F1RR44_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=LMAN1 PE=1 SV=1 F1SMS8_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa PE=4 SV=1 A0A075B7I6_PIG 0 5 0

Lactoylglutathione lyase OS=Sus scrofa domesticus GN=GLO1 PE=3

SV=1 A0A0B8RTN5_PIG (+1) 0 5 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=GSTM3 PE=1

SV=1 F1S605_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=HCLS1 PE=1 SV=1 F1SPE8_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=LOC100625772 PE=1 SV=2 F1ST49_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=ME3 PE=1 SV=2 F1STS4_PIG 0 6 0

Transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) OS=Sus

scrofa GN=TAP2 PE=1 SV=1 A5D9J7_PIG (+2) 0 0 6

Mx1 protein OS=Sus scrofa GN=Mx1 PE=3 SV=1 A7VK01_PIG (+1) 0 0 5

Uncharacterized protein OS=Sus scrofa GN=DNAJA2 PE=1 SV=1 F1RP05_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=ARHGAP4 PE=4 SV=1 F1S291_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=NDUFS3 PE=1 SV=1 F1SIF2_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=STOML2 PE=1 SV=1 F1SIH5_PIG 0 0 6

Page 36: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SUB1 PE=1

SV=1 I3LQI3_PIG 0 0 6

Fibrinogen A-alpha-chain (Fragment) OS=Sus scrofa PE=4 SV=1 Q28936_PIG 0 0 10

Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=1 SV=2 F1SN67_PIG 0 0 81

CRYAB OS=Sus scrofa GN=CRYAB PE=3 SV=1 B1Q039_PIG (+1) 0 0 7

Chloride intracellular channel protein OS=Sus scrofa domesticus

GN=CLIC4 PE=3 SV=1 A0A0B8RZN4_PIG 0 8 0

Signal transducer and activator of transcription OS=Sus scrofa GN=stat5B

PE=2 SV=1 E7CR01_PIG (+1) 0 0 7

Uncharacterized protein OS=Sus scrofa GN=RBM4 PE=1 SV=2 F1RUT1_PIG 0 0 7

Uncharacterized protein OS=Sus scrofa GN=KRT9 PE=3 SV=1 F1S0J9_PIG 0 0 13

Uncharacterized protein OS=Sus scrofa GN=CACYBP PE=1 SV=1 F1S710_PIG 0 6 0

Proteasome subunit alpha type OS=Sus scrofa GN=PSMA8 PE=1 SV=1 F1SBA5_PIG 0 7 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=VAV1 PE=4

SV=1 F1SCN0_PIG 0 0 7

Annexin OS=Sus scrofa GN=ANXA8 PE=1 SV=1 F1SEN1_PIG 0 7 0

Alpha-mannosidase OS=Sus scrofa GN=LOC100518647 PE=1 SV=1 F1SEY1_PIG 0 7 0

Uncharacterized protein OS=Sus scrofa GN=MTCH2 PE=1 SV=1 F1SIE0_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=NUP155 PE=1 SV=2 F1SN95_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=DNPEP PE=1 SV=2 F1SR76_PIG 0 7 0

Uncharacterized protein OS=Sus scrofa GN=TINAGL1 PE=1 SV=1 F1SVA2_PIG 0 0 7

Uncharacterized protein OS=Sus scrofa GN=COCH PE=1 SV=1 I3LD22_PIG 0 0 6

Sulfotransferase (Fragment) OS=Sus scrofa PE=1 SV=1 I3LLX8_PIG (+1) 0 0 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RBM14 PE=1

SV=1 I3LMT3_PIG 0 0 7

Calcium/calmodulin-dependent protein kinase type II subunit delta

OS=Sus scrofa GN=CAMK2D PE=2 SV=1 KCC2D_PIG 0 0 6

40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=1 SV=2 RS28_PIG 0 2 3

Uncharacterized protein OS=Sus scrofa GN=LOC100521234 PE=1 SV=1 I3LDE1_PIG 0 2 3

60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=1 SV=4 RL29_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=RANBP1 PE=1 SV=1 F1RHM8_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=OAT PE=1 SV=1 F1SDP3_PIG 0 4 0

Page 37: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=PPP1R7 PE=1 SV=2 F1SI09_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=RAB5C PE=1 SV=1 F2Z560_PIG 0 0 4

Protein S100 (Fragment) OS=Sus scrofa GN=LOC100620367 PE=1 SV=1 J9JIL5_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC100524650 PE=1 SV=2 F1SR70_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=NOLC1 PE=1 SV=1 F1S8T1_PIG 0 3 2

Importin subunit alpha OS=Sus scrofa PE=2 SV=1 C6K7I0_PIG (+1) 0 3 3

Uncharacterized protein OS=Sus scrofa GN=MOV10 PE=1 SV=2 F1SBP9_PIG 0 3 3

Uncharacterized protein OS=Sus scrofa GN=SNRPD3 PE=1 SV=1 F2Z4Y0_PIG 0 3 3

Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=1

SV=1 I3LDW9_PIG (+1) 0 3 3

Uncharacterized protein OS=Sus scrofa GN=SPRR1A PE=1 SV=1 I3LRR1_PIG 0 3 3

ATP-binding cassette, sub-family E (OABP), member 1 OS=Sus scrofa

GN=ABCE1 PE=2 SV=1 K9J4N5_PIG 3 3 0

Synaptogyrin OS=Sus scrofa GN=SYNGR2 PE=2 SV=1 M3UZ93_PIG 0 3 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PTPRCAP PE=1

SV=1 F1RUZ1_PIG 0 3 3

Uncharacterized protein OS=Sus scrofa PE=4 SV=2 F1S6C1_PIG (+1) 0 3 3

Eukaryotic translation initiation factor 2 subunit 1 OS=Sus scrofa

GN=EIF2S1 PE=1 SV=1 F2Z5J8_PIG 0 3 2

Protein kinase C OS=Sus scrofa GN=PRKCB_tv2 PE=2 SV=1 K9J4L8_PIG 0 2 3

WDFY family member 4 OS=Sus scrofa domesticus GN=WDFY4 PE=4

SV=1 A0A0B8RZY5_PIG 0 2 3

Ribosomal protein L19 (Fragment) OS=Sus scrofa GN=RPL19 PE=1

SV=2 F2Z546_PIG 0 2 2

COX7A2 OS=Sus scrofa GN=COX7A2 PE=2 SV=1 A1XQV6_PIG (+1) 0 2 4

Copine I OS=Sus scrofa GN=CPNE1 PE=2 SV=1 B8XSK0_PIG (+1) 0 3 5

Perilipin OS=Sus scrofa GN=M6PRBP1 PE=3 SV=1 C3W8F2_PIG (+2) 0 3 3

Uncharacterized protein OS=Sus scrofa GN=ISOC1 PE=1 SV=1 F1RKJ9_PIG 2 4 0

Peptidoglycan-recognition protein OS=Sus scrofa GN=PGLYRP1 PE=1

SV=1 F1RM24_PIG 0 2 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SRSF7 PE=1

SV=2 F1S4R5_PIG 0 3 5

Page 38: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=ADD3 PE=1 SV=1 F1S5M9_PIG 0 2 4

ATP synthase subunit delta, mitochondrial OS=Sus scrofa GN=ATP5D

PE=1 SV=1 F1S6Q7_PIG 0 2 4

Lon protease homolog OS=Sus scrofa GN=LONP1 PE=1 SV=1 F1SBU7_PIG (+1) 0 2 4

Uncharacterized protein OS=Sus scrofa GN=CAPRIN1 PE=1 SV=1 F1SGS6_PIG 0 4 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RPS25 PE=1

SV=2 F2Z5G8_PIG 0 2 3

Uncharacterized protein OS=Sus scrofa GN=EIF4H PE=1 SV=1 I3L594_PIG (+1) 0 3 3

60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=1 SV=1 RL31_PIG 0 2 4

Tropomyosin alpha-1 chain OS=Sus scrofa GN=TPM1 PE=1 SV=1 F2Z5B6_PIG 0 12 2

Uncharacterized protein OS=Sus scrofa GN=SNRPD1 PE=1 SV=1 F2Z5G9_PIG 0 4 2

Type VI collagen alpha-1 chain (Fragment) OS=Sus scrofa GN=COL6A1

PE=2 SV=1 Q1T7A9_PIG 0 2 4

Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1 RAB1B_PIG 0 11 6

Tryptase OS=Sus scrofa GN=MCT7 PE=1 SV=1 I3LPN0_PIG (+1) 0 2 4

Dihydrolipoyllysine-residue succinyltransferase OS=Sus scrofa

GN=DLST-tv1 PE=2 SV=1 K9IW73_PIG (+1) 0 2 4

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial

OS=Sus scrofa GN=SDHB PE=1 SV=1 I3LDC1_PIG 0 2 4

RAB2A, member RAS oncogene family OS=Sus scrofa domesticus

GN=RAB2A PE=4 SV=1 A0A0B8RSC2_PIG 0 5 0

Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus scrofa

domesticus GN=PAFAH1B1 PE=3 SV=1 A0A0B8RSG1_PIG (+2) 0 3 0

Methionine adenosyltransferase 2beta OS=Sus scrofa GN=MAT2beta

PE=2 SV=1 B7SU41_PIG (+1) 0 5 0

Deoxyribonuclease-2-alpha OS=Sus scrofa GN=DNASE2 PE=1 SV=1 DNS2A_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=GRHPR PE=1 SV=2 F1ST73_PIG 0 4 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PSMC2 PE=1

SV=1 F1SB53_PIG 0 5 0

Eukaryotic translation initiation factor 3 subunit D OS=Sus scrofa

GN=EIF3D PE=1 SV=1 F1SKJ5_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=RPA2 PE=1 SV=1 F1STM9_PIG 0 4 0

Page 39: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

SUMO-conjugating enzyme OS=Sus scrofa GN=UBE2I PE=1 SV=1 I3LSZ1_PIG 0 5 0

Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa GN=LOC654323 PE=1

SV=1 Q2VTP6_PIG 0 5 0

LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) OS=Sus

scrofa GN=LSM2 PE=4 SV=1 A5A8V8_PIG 0 5 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=TNFAIP8 PE=1

SV=2 F1RLC9_PIG 0 4 0

Peroxiredoxin 4 OS=Sus scrofa domesticus GN=PRDX4 PE=4 SV=1 A0A0B8RTC3_PIG (+1) 0 0 7

Mitochondrial NDUFA4 OS=Sus scrofa GN=NDUFA4 PE=1 SV=1 A1XQS3_PIG 0 0 5

Apolipoprotein C-III OS=Sus scrofa GN=APOC3 PE=1 SV=2 APOC3_PIG 0 0 4

ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1 ARF6_PIG (+2) 0 0 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=CD5 PE=4 SV=2 F1RIA2_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=NDUFS6 PE=1 SV=1 F1S031_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=SSR4 PE=1 SV=2 F1S296_PIG (+2) 0 0 5

Uncharacterized protein OS=Sus scrofa GN=S100A14 PE=1 SV=1 F1SFV3_PIG 0 0 5

Serine/arginine-rich splicing factor 10 isoform 2 OS=Sus scrofa

GN=SRSF10 PE=2 SV=1 F8TEL6_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=ILK PE=1 SV=1 I3L9C8_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=LOC100620173 PE=1 SV=1 I3LER3_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=SAP18 PE=1 SV=1 I3LF36_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=PAK2 PE=1 SV=2 F1SQW0_PIG 0 5 0

Leupaxin OS=Sus scrofa domesticus GN=LPXN PE=4 SV=1 A0A0B8RVR2_PIG 0 0 6

Beta-glucuronidase OS=Sus scrofa GN=GUSB PE=3 SV=1 BGLR_PIG 0 6 0

S-formylglutathione hydrolase OS=Sus scrofa GN=ESD PE=2 SV=1 ESTD_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=PSMD13 PE=1 SV=1 F1RGC9_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=TMED7 PE=1 SV=1 F1RLE5_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=SAE1 PE=1 SV=1 F1RM03_PIG 0 6 0

Phosphoglycerate kinase (Fragment) OS=Sus scrofa GN=PGK1 PE=1

SV=2 F1RPH0_PIG (+1) 16 0 0

Uncharacterized protein OS=Sus scrofa GN=SCARB2 PE=1 SV=1 F1RYT3_PIG 0 0 5

Eukaryotic translation initiation factor 3 subunit H OS=Sus scrofa

GN=EIF3H PE=1 SV=2 F1S1J9_PIG 0 6 0

Page 40: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=LOC100520245 PE=1 SV=1 F1S2K3_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=STT3A PE=1 SV=2 F1S775_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=NT5C2 PE=1 SV=2 F1S848_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=TRIM29 PE=4 SV=1 F1S9T4_PIG 0 0 6

Uncharacterized protein (Fragment) OS=Sus scrofa GN=FBLN5 PE=1

SV=2 F1SD87_PIG 0 0 6

Chromodomain-helicase-DNA-binding protein 4 OS=Sus scrofa

GN=CHD4 PE=1 SV=2 F1SLR5_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=TMEM43 PE=1 SV=2 F1SPI1_PIG 0 0 5

Proteasome subunit alpha type OS=Sus scrofa GN=LOC100154408 PE=1

SV=1 F1SSL6_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=SPCS2 PE=1 SV=2 F1SUP2_PIG 0 0 6

Uncharacterized protein OS=Sus scrofa GN=NDUFB10 PE=1 SV=1 I3LDC3_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=LOC100739611 PE=1 SV=1 I3LV61_PIG 0 0 6

E3 SUMO-protein ligase RanBP2 OS=Sus scrofa GN=RANBP2 PE=2

SV=1 K9IVK2_PIG 0 0 7

PRA1 family protein 3 OS=Sus scrofa GN=ARL6IP5 PE=2 SV=1 PRAF3_PIG 0 0 4

Sideroflexin-1 OS=Sus scrofa GN=SFXN1 PE=2 SV=1 SFXN1_PIG 0 0 5

Mitochondrial delta3,delta2-dienoyl-CoA isomerase OS=Sus scrofa

GN=Eci1 PE=2 SV=1 M9TGS8_PIG 2 2 0

Actin-related protein 2/3 complex subunit 5 OS=Sus scrofa PE=2 SV=1 B5APV1_PIG (+1) 0 3 0

Cytochrome b-245 heavy chain OS=Sus scrofa GN=CYBB PE=1 SV=1 K7GMQ7_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=DRG1 PE=1 SV=2 F1RPB7_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=CORO1A PE=1 SV=1 I3LR17_PIG 0 23 0

Adiponectin (Fragment) OS=Sus scrofa PE=4 SV=1 A4GWT6_PIG (+8) 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=HNRNPA0 PE=1

SV=2 F1RH94_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=HNRNPH3 PE=1 SV=1 I3LFQ0_PIG 0 0 3

Transforming growth factor-beta-induced protein ig-h3 OS=Sus scrofa

GN=TGFBI PE=1 SV=2 F1RHA7_PIG 0 0 11

PYD and CARD domain containing OS=Sus scrofa domesticus

GN=PYCARD PE=4 SV=1 A0A0B8RTB5_PIG (+1) 0 3 2

Page 41: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Calpain 2 OS=Sus scrofa GN=Capn2 PE=2 SV=1 A6YNL5_PIG 0 2 3

Diacylglycerol kinase alpha OS=Sus scrofa GN=DGKA PE=1 SV=1 DGKA_PIG 0 3 2

Signal transducer and activator of transcription OS=Sus scrofa GN=stat2

PE=2 SV=1 E7CR00_PIG (+2) 0 2 3

Programmed cell death protein 5 OS=Sus scrofa GN=PDCD5 PE=1 SV=1 F1RNX2_PIG (+1) 2 3 0

Uncharacterized protein OS=Sus scrofa GN=ENOPH1 PE=1 SV=1 F1RVD2_PIG 2 3 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1SH96_PIG 3 2 0

Uncharacterized protein OS=Sus scrofa GN=TCEB1 PE=1 SV=1 F2Z545_PIG 0 3 2

60S ribosomal protein L36 OS=Sus scrofa GN=RPL36 PE=1 SV=1 F2Z5K6_PIG 0 3 2

Uncharacterized protein OS=Sus scrofa GN=GART PE=1 SV=1 I3LH11_PIG (+1) 0 3 2

Ubiquitin-fold modifier 1 OS=Sus scrofa GN=UFM1 PE=2 SV=1 M3UZ42_PIG 2 3 0

D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3

SV=1 SERA_PIG 2 3 0

SLA-2 protein (Fragment) OS=Sus scrofa GN=SLA-2 PE=2 SV=1 T2HFS2_PIG 0 9 12

Cell division cycle and apoptosis regulator 1 OS=Sus scrofa domesticus

GN=CCAR1 PE=4 SV=1 A0A0B8RTV6_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=ASAH1 PE=1 SV=2 F1SES5_PIG 0 2 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=VPS4B PE=1

SV=2 F1SMW4_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=SMU1 PE=1 SV=1 F2Z5D8_PIG 0 2 2

Lambda-crystallin homolog OS=Sus scrofa GN=CRYL1 PE=2 SV=3 CRYL1_PIG (+1) 2 2 0

Uncharacterized protein OS=Sus scrofa GN=THRAP3 PE=1 SV=1 I3LIA3_PIG (+1) 0 2 3

Uncharacterized protein OS=Sus scrofa GN=CSRP1 PE=1 SV=1 I3LL97_PIG 0 3 2

Mitogen-activated protein kinase OS=Sus scrofa GN=MAPK14 PE=1

SV=2 F1RYA1_PIG 0 2 3

Uncharacterized protein OS=Sus scrofa GN=EPB41L2 PE=1 SV=2 F1S3M9_PIG 0 2 3

Uncharacterized protein OS=Sus scrofa GN=MBNL1 PE=4 SV=2 F1SJM7_PIG 0 2 3

Ras GTPase-activating-like protein IQGAP2 OS=Sus scrofa GN=IQGAP2

PE=2 SV=1 K9J6M1_PIG 0 4 2

Dynein cytoplasmic heavy polypeptide-like protein (Fragment) OS=Sus

scrofa PE=2 SV=1 A1Z624_PIG 0 3 3

Dihydrofolate reductase OS=Sus scrofa GN=DHFR PE=1 SV=1 DYR_PIG (+1) 0 2 0

Page 42: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=LOC100621992 PE=1 SV=2 F1RW98_PIG 0 2 0

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0V2_PIG 0 0 12

Caspase 3, apoptosis-related cysteine peptidase OS=Sus scrofa domesticus

GN=CASP3 PE=3 SV=1 A0A0B8RTV8_PIG (+1) 0 3 0

Small nuclear ribonucleoprotein-associated protein OS=Sus scrofa PE=2

SV=1 H9TUB5_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=BPNT1 PE=1 SV=1 F1S9K3_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=FLNC PE=1 SV=1 F1SMN5_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3L995_PIG (+1) 0 0 4

Glutamyl-prolyl-tRNA synthetase OS=Sus scrofa GN=QARS PE=2 SV=1 M3TYW5_PIG 0 4 0

Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa

GN=PCMT1 PE=1 SV=3 PIMT_PIG 0 4 0

Adenylosuccinate synthetase isozyme 2 OS=Sus scrofa GN=ADSS PE=2

SV=1 PURA2_PIG 0 2 0

Lysophospholipase I OS=Sus scrofa domesticus GN=LYPLA1 PE=4

SV=1 A0A0B8RTH9_PIG (+1) 0 4 0

G1 to S phase transition 1 OS=Sus scrofa domesticus GN=GSPT1 PE=4

SV=1 A0A0B8RZJ3_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=ALDH16A1 PE=1 SV=1 F1RHZ9_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=TCOF1 PE=1 SV=2 F1RL66_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=LARS PE=1 SV=2 F1RM15_PIG (+1) 0 4 0

Integrin beta OS=Sus scrofa GN=ITGB1 PE=1 SV=1 F1RVE7_PIG 0 4 0

Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha OS=Sus scrofa

GN=PIP4K2A PE=1 SV=2 F1RVI4_PIG (+2) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=ACOT9 PE=1 SV=2 F1SQ00_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=FAM98B PE=1 SV=2 F1SS16_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=EIF5B PE=1 SV=2 F1STE8_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=CPPED1 PE=1 SV=1 I3LF44_PIG 0 4 0

Sorbitol dehydrogenase OS=Sus scrofa GN=SORD PE=1 SV=1 F1SN27_PIG 0 4 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PFDN5 PE=1

SV=1 F1SFR2_PIG 0 3 0

Annexin A1 OS=Sus scrofa GN=ANXA1 PE=1 SV=3 ANXA1_PIG 0 14 0

Page 43: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Actin alpha 2 OS=Sus scrofa GN=ACTA2 PE=1 SV=1 C7AI81_PIG 0 45 0

Uncharacterized protein OS=Sus scrofa GN=PRPS1 PE=1 SV=1 F2Z572_PIG 0 6 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=IARS2 PE=1

SV=1 I3LUE8_PIG 0 3 0

40S ribosomal protein S29 OS=Sus scrofa GN=RPS29 PE=1 SV=1 F2Z5R7_PIG 0 3 0

ATP synthase subunit e, mitochondrial OS=Sus scrofa GN=ATP5I PE=3

SV=4 ATP5I_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=NAPA PE=1 SV=2 F1RLB6_PIG 0 0 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=FLOT2 PE=1

SV=1 F1RNA6_PIG (+1) 0 0 4

Uncharacterized protein OS=Sus scrofa GN=THOC2 PE=1 SV=2 F1RU72_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=SLC25A4 PE=1 SV=1 F1RZQ6_PIG 0 0 13

Uncharacterized protein OS=Sus scrofa GN=ACIN1 PE=1 SV=1 F1S9D1_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=CD97 PE=1 SV=2 F1SD42_PIG (+2) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=NDUFV2 PE=1 SV=1 F1SM98_PIG 0 0 4

Histone deacetylase OS=Sus scrofa GN=HDAC1 PE=3 SV=1 I3LG31_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=SSR1 PE=1 SV=2 F1RW78_PIG 0 0 4

RU2B OS=Sus scrofa PE=2 SV=1 Q06A96_PIG 0 0 3

Reticulon (Fragment) OS=Sus scrofa GN=RTN4 PE=4 SV=1 Q6IG15_PIG (+1) 0 0 4

Protein S100-A10 OS=Sus scrofa GN=LOC100515138 PE=1 SV=1 F2Z5M2_PIG (+2) 0 0 3

Protein S100 OS=Sus scrofa GN=LOC100737436 PE=3 SV=1 F1RY38_PIG (+2) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=RUVBL2 PE=1 SV=2 F1RIP4_PIG 0 0 4

Fibromodulin (Fragment) OS=Sus scrofa GN=FMOD PE=1 SV=2 F1S6B5_PIG 0 0 4

Oxidative-stress responsive 1 OS=Sus scrofa PE=2 SV=1 A0A096ZXA2_PIG (+3) 0 4 0

Corticosteroid 11-beta-dehydrogenase isozyme 1 OS=Sus scrofa

GN=HSD11B1 PE=1 SV=1 F1SF47_PIG 0 0 4

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RAC1 PE=1

SV=1 I3LFI0_PIG 0 7 0

Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus

scrofa GN=ACADM PE=1 SV=3 ACADM_PIG 0 5 0

Serine/threonine protein kinase MST4 OS=Sus scrofa PE=2 SV=1 B7U6F4_PIG (+1) 0 0 3

Page 44: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Azurocidin OS=Sus scrofa PE=1 SV=1 CAP7_PIG 0 0 5

Dihydropteridine reductase OS=Sus scrofa GN=QDPR PE=2 SV=1 DHPR_PIG (+1) 0 5 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PITPNB PE=1

SV=2 F1RG66_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100514845 PE=1 SV=2 F1RGI2_PIG 0 5 0

Cytochrome c oxidase subunit 6A, mitochondrial OS=Sus scrofa

GN=COX6A1 PE=1 SV=1 F1RJI7_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=GTF2I PE=1 SV=2 F1RJL2_PIG (+2) 0 0 5

Uncharacterized protein OS=Sus scrofa GN=SERPIND1 PE=1 SV=1 F1RKY2_PIG 0 5 0

Receptor expression-enhancing protein OS=Sus scrofa GN=REEP5 PE=1

SV=1 F1RLG5_PIG 0 0 5

Vacuolar protein sorting-associated protein 29 OS=Sus scrofa GN=VPS29

PE=1 SV=2 F1RNN0_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=LOC100621582 PE=1 SV=2 F1RQY4_PIG 0 0 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RARS PE=1

SV=2 F1RR89_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=ADK PE=1 SV=2 F1S2G5_PIG 0 5 0

Olfactomedin-like protein 3 OS=Sus scrofa GN=OLFML3 PE=1 SV=1 F1SBR6_PIG 0 0 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=FERMT2 PE=1

SV=1 F1SFE3_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=ILKAP PE=1 SV=1 F1SIU8_PIG (+1) 0 5 0

Pleckstrin OS=Sus scrofa GN=PLEK PE=1 SV=2 F1SJ07_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=USP15 PE=1 SV=2 F1SKD5_PIG 0 5 0

Sulfurtransferase OS=Sus scrofa GN=TST PE=1 SV=1 F1SKL2_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=NDUFA8 PE=1 SV=2 F1SLR1_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=CRNN PE=1 SV=2 F1ST36_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=LOC100624746 PE=1 SV=2 F1SUF6_PIG 0 4 0

Structural maintenance of chromosomes protein OS=Sus scrofa

GN=SMC1A PE=1 SV=1 F2Z5A8_PIG (+1) 0 0 5

Uncharacterized protein OS=Sus scrofa GN=RPRD1B PE=1 SV=1 F2Z5H3_PIG 0 4 0

Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1 GALM_PIG 0 5 0

Tyrosine--tRNA ligase OS=Sus scrofa GN=YARS PE=1 SV=1 I3L5T8_PIG 0 4 0

Page 45: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=LOC100625253 PE=4 SV=1 I3L604_PIG (+1) 0 0 5

ATP synthase-coupling factor 6, mitochondrial OS=Sus scrofa

GN=LOC100622245 PE=3 SV=1 I3L6G6_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=COL18A1 PE=1 SV=1 I3LBZ1_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=PURA PE=1 SV=1 I3LCN6_PIG 0 0 4

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LHY0_PIG 0 0 8

Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Sus scrofa

GN=GPD1L PE=1 SV=1 I3LLU0_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=LOC100510904 PE=1 SV=1 I3LNZ2_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=ZNF22 PE=1 SV=1 I3LR03_PIG 0 0 5

Ferritin OS=Sus scrofa GN=FTH1 PE=1 SV=1 I3LR69_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=UPP1 PE=1 SV=1 I3LSZ5_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=HNRNPUL1 PE=1 SV=1 I3LU51_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LAMA3 PE=4 SV=1 I3LV27_PIG 0 0 5

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SMS PE=1 SV=1 K7GS54_PIG 0 4 0

Calcium-transporting ATPase OS=Sus scrofa GN=ATP2A3_tv1 PE=2

SV=1 K9IW69_PIG 0 0 10

Erythrocyte band 7 integral membrane protein isoform a OS=Sus scrofa

GN=STOM_tv1 PE=2 SV=1 K9J6J2_PIG 0 0 4

Membrane-associated progesterone receptor component 1 OS=Sus scrofa

GN=PGRMC1 PE=1 SV=3 PGRC1_PIG 0 0 5

Double stranded RNA-dependent protein kinase OS=Sus scrofa GN=PKR

PE=2 SV=1 Q865A4_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=DCTN1 PE=1 SV=2 F1SNT8_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PSMD9 PE=1 SV=1 F1RNR7_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=SEC23B PE=1 SV=1 F1SBH2_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=ELMO1 PE=4 SV=2 F1SIM4_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=COPZ1 PE=1 SV=1 F2Z5S7_PIG 0 0 2

Leucine-rich repeat interacting protein-1 OS=Sus scrofa PE=2 SV=1 M1FV56_PIG 0 0 2

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa

subunit OS=Sus scrofa GN=DDOST PE=1 SV=1 F1SU12_PIG 2 0 0

Lactotransferrin OS=Sus scrofa GN=LTF PE=1 SV=1 Q6YT39_PIG 3 0 0

Page 46: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Calponin-1 OS=Sus scrofa GN=CNN1 PE=2 SV=1 CNN1_PIG 2 0 0

Uncharacterized protein OS=Sus scrofa GN=RAB11B PE=1 SV=1 F2Z5J9_PIG 2 0 0

F-actin capping protein beta subunit variant I OS=Sus scrofa GN=CAPZB

PE=2 SV=1 D2JYW3_PIG 2 0 0

Ubiquitin specific peptidase 9, X-linked OS=Sus scrofa domesticus

GN=USP9X PE=4 SV=1 A0A0B8RS61_PIG 0 2 2

Tetraspanin OS=Sus scrofa domesticus GN=CD81 PE=3 SV=1 A0A0B8RTU9_PIG (+2) 0 2 2

Ubiquitin associated protein 2-like OS=Sus scrofa domesticus

GN=UBAP2L PE=4 SV=1 A0A0B8RVE3_PIG (+1) 0 2 2

Adenosine deaminase OS=Sus scrofa domesticus GN=ADA PE=3 SV=1 A0A0B8RW47_PIG (+1) 0 2 2

SEC24 family member C OS=Sus scrofa domesticus GN=SEC24C PE=4

SV=1 A0A0B8S014_PIG (+1) 0 2 2

AP-3 complex subunit beta OS=Sus scrofa GN=AP3B1 PE=2 SV=1 A5A767_PIG (+1) 0 2 2

Signal recognition particle subunit SRP68 OS=Sus scrofa GN=SRP68

PE=1 SV=2 F1RW08_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=SNRPA1 PE=1 SV=1 F1RWS8_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=HCFC1 PE=1 SV=2 F1RZU3_PIG (+1) 0 2 2

Uncharacterized protein OS=Sus scrofa GN=MAGOH PE=1 SV=2 F1S766_PIG (+1) 0 2 2

Uncharacterized protein OS=Sus scrofa GN=IPO4 PE=1 SV=2 F1SGN4_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=DOCK8 PE=1 SV=2 F1SJE9_PIG (+1) 0 2 2

Uncharacterized protein OS=Sus scrofa GN=TNPO3 PE=1 SV=2 F1SMQ0_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=DNAJC13 PE=1 SV=1 F1SPE9_PIG 0 2 2

Uncharacterized protein OS=Sus scrofa GN=BASP1 PE=1 SV=1 F1SRL9_PIG 0 2 2

E3 ubiquitin-protein ligase UBR4 OS=Sus scrofa GN=UBR4 PE=2 SV=1 K9J6M4_PIG 0 2 2

Lysozyme C-2 OS=Sus scrofa PE=1 SV=2 LYSC2_PIG 2 2 0

Uncharacterized protein OS=Sus scrofa GN=DDX46 PE=1 SV=1 I3LR20_PIG 0 2 2

ATPase inhibitor, mitochondrial OS=Sus scrofa GN=ATPIF1 PE=3 SV=2 ATIF1_PIG 0 2 2

Sterol carrier protein 2 OS=Sus scrofa GN=SCP2 PE=2 SV=1 D0G7F1_PIG 0 2 0

Putative cysteine-rich protein 2 OS=Sus scrofa GN=CRIP2 PE=4 SV=1 K7ZMG1_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=ATP6V1E1 PE=1 SV=1 F1SHR3_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=CKAP5 PE=1 SV=2 F1SIB5_PIG 0 2 0

Page 47: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

C-terminal binding protein 1 tv2 OS=Sus scrofa GN=CTBP1 PE=2 SV=1 M3VHA2_PIG 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ARHGEF1 PE=1

SV=2 F1RGG2_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=UBA2 PE=1 SV=2 F1RNU6_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=PSMD12 PE=1 SV=1 F1RSM2_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1SB18_PIG 0 3 0

GMP reductase OS=Sus scrofa GN=GMPR2 PE=1 SV=1 F1SGN8_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=INPP1 PE=1 SV=1 F1SN51_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100522692 PE=1 SV=1 I3LHC8_PIG 0 3 0

Glutathione S-transferase mu 2 OS=Sus scrofa PE=2 SV=1 Q000H9_PIG 0 4 0

DNA helicase OS=Sus scrofa GN=MCM2 PE=1 SV=2 F1SPF3_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=ALDH7A1 PE=1 SV=2 F1RKM1_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=ETF1 PE=1 SV=1 F2Z505_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=CIRBP PE=1 SV=1 F1S6R1_PIG 0 2 0

Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD3 PE=1 SV=1 I3LUD1_PIG (+1) 0 3 0

Succinyl-CoA:3-ketoacid-coenzyme A transferase OS=Sus scrofa

domesticus GN=OXCT1 PE=3 SV=1 A0A0B8RVM9_PIG (+1) 0 3 0

Proteasome-associated protein ECM29-like protein OS=Sus scrofa

domesticus GN=KIAA0368 PE=4 SV=1 A0A0B8RVS2_PIG (+1) 0 3 0

N(G),N(G)-dimethylarginine dimethylaminohydrolase 2 OS=Sus scrofa

GN=DDAH2 PE=2 SV=1 A0A0D5CDB2_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LCN2 PE=1 SV=1 F1RRX1_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1SC51_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=GLRX3 PE=1 SV=1 F1SDJ8_PIG 0 3 0

Basic leucine zipper and W2 domain-containing protein 1 OS=Sus scrofa

GN=BZW1 PE=1 SV=2 F1SI55_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=A2ML1 PE=4 SV=2 F1SLW8_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=INPP5B PE=4 SV=2 F1SV41_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=MOB1B PE=4

SV=2 F2Z5C9_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=PSMC1 PE=1 SV=1 F2Z5J1_PIG 0 3 0

EWS OS=Sus scrofa GN=EWS PE=2 SV=1 G8ENL5_PIG 0 3 0

Page 48: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Serrate, RNA effector molecule OS=Sus scrofa domesticus GN=SRRT

PE=4 SV=1 A0A0B8S002_PIG (+1) 0 3 0

Inosine-5'-monophosphate dehydrogenase OS=Sus scrofa GN=IMPDH2

PE=1 SV=2 F1SKI5_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NASP PE=1

SV=1 I3LRP1_PIG 0 3 0

60S ribosomal protein L36a OS=Sus scrofa GN=RPL36A PE=1 SV=2 RL36A_PIG 0 3 0

BH3-interacting domain death agonist OS=Sus scrofa GN=BID PE=2

SV=1 BID_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=AIMP2 PE=1 SV=1 F1RFM7_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=CCBL2 PE=1

SV=2 F1S4D5_PIG 0 3 0

Adenylate kinase isoenzyme 1 OS=Sus scrofa GN=AK1 PE=1 SV=1 KAD1_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LZIC PE=1 SV=1 I3L889_PIG 0 3 0

Cystatin-B OS=Sus scrofa GN=CSTB PE=1 SV=1 CYTB_PIG (+3) 0 2 0

DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 OS=Sus scrofa domesticus

GN=DDX18 PE=3 SV=1 A0A0B8S095_PIG (+3) 0 0 3

Nuclear factor of kappa light polypeptide enhancer in B-cells 1 OS=Sus

scrofa GN=NFKB1 PE=2 SV=1 A7XNS1_PIG (+1) 0 0 3

T-cadherin OS=Sus scrofa PE=2 SV=1 A8D737_PIG 0 0 3

Importin subunit alpha OS=Sus scrofa PE=2 SV=1 C6K7I1_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=USMG5 PE=1 SV=1 F1RFD4_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=RPA1 PE=1 SV=1 F1RHH4_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=GNA13 PE=1 SV=2 F1RV20_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=NHP2 PE=1 SV=2 F1S3E3_PIG 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=MMS19 PE=1

SV=2 F1S8Y2_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=NDUFA5 PE=1 SV=1 F1SLY2_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=TUBB2B PE=1 SV=1 F2Z5B2_PIG 0 0 58

Uncharacterized protein OS=Sus scrofa GN=SEC61B PE=1 SV=1 F2Z5P0_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=MSH6 PE=3 SV=1 I3LHZ9_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LLT2_PIG 0 0 3

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Tetraspanin OS=Sus scrofa domesticus GN=CD9 PE=3 SV=1 A0A0B8RT42_PIG (+4) 0 0 2

Nck-associated protein 1-like protein OS=Sus scrofa GN=NCKAP1L

PE=2 SV=1 K9IWB5_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=FIS1 PE=1 SV=1 I3LD01_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=SLC25A1 PE=1 SV=2 F1RK74_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=MFAP5 PE=1 SV=2 F1SLW6_PIG 0 0 3

Vesicle-trafficking protein SEC22b OS=Sus scrofa domesticus

GN=SEC22B PE=4 SV=1 A0A0B8RSA5_PIG (+2) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=PSMD8 PE=1 SV=1 F1RKI9_PIG 0 3 0

DEAD (Asp-Glu-Ala-Asp) box helicase 5 OS=Sus scrofa GN=DDX5

PE=2 SV=1 A0A0A7HF29_PIG 0 0 9

Protein S100-A6 OS=Sus scrofa GN=S100A6 PE=3 SV=1 S10A6_PIG 0 2 0

Thyroid hormone receptor interactor 12 OS=Sus scrofa domesticus

GN=TRIP12 PE=4 SV=1 A0A0B8RZ14_PIG (+1) 0 0 3

Solute carrier family 3 member 2 (Fragment) OS=Sus scrofa GN=SLC3A2

PE=2 SV=1 B2D2K7_PIG (+1) 0 0 3

Caveolin-1 OS=Sus scrofa GN=CAV1 PE=2 SV=1 CAV1_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=SCPEP1 PE=1 SV=2 F1RSC3_PIG 0 3 0

Mitochondrial apoptosis-inducing factor 1 transcript variant 1 OS=Sus

scrofa GN=AIFM1 PE=2 SV=1 A0A068CA64_PIG (+3) 0 0 4

SAM and SH3 domain containing 3 OS=Sus scrofa domesticus

GN=SASH3 PE=4 SV=1 A0A0B8RSA6_PIG (+1) 0 4 0

TROVE domain family, member 2 OS=Sus scrofa domesticus

GN=TROVE2 PE=4 SV=1 A0A0B8RVE7_PIG 0 4 0

Lipase OS=Sus scrofa domesticus GN=LIPA PE=3 SV=1 A0A0B8RZF0_PIG (+2) 0 4 0

Transmembrane emp24 domain trafficking protein 2 OS=Sus scrofa

domesticus GN=TMED2 PE=3 SV=1 A0A0B8RZZ5_PIG (+1) 0 0 3

Cysteine and histidine-rich domain (CHORD) containing 1 OS=Sus scrofa

domesticus GN=CHORDC1 PE=4 SV=1 A0A0B8S0A3_PIG (+1) 0 3 0

UDP-glucuronosyltransferase OS=Sus scrofa GN=mpugt1A6 PE=2 SV=1 A0A0D6A5J1_PIG (+3) 0 0 4

Aminoacylase-1 OS=Sus scrofa GN=ACY1 PE=1 SV=2 ACY1_PIG 0 4 0

Phosphoglycerate mutase 2 OS=Sus scrofa GN=PGAM2 PE=1 SV=1 B5KJG2_PIG 0 12 0

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Na(+)/H(+) exchange regulatory cofactor NHE-RF OS=Sus scrofa

GN=SLC9A3R1 PE=1 SV=1 B8XH67_PIG 0 4 0

Mitochondrial carnitine palmitoyltransferase II OS=Sus scrofa GN=CPT2

PE=2 SV=1 C3URJ6_PIG (+3) 0 0 4

Uncharacterized protein OS=Sus scrofa GN=NUP133 PE=1 SV=1 F1RG40_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=NUP62 PE=1 SV=2 F1RH59_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=COL4A2 PE=1 SV=2 F1RLL9_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=XPO7 PE=1 SV=2 F1RMC3_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=CUL4A PE=1 SV=1 F1RN43_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=PRPF40A PE=1 SV=2 F1RQH2_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC100153617 PE=1 SV=1 F1RY04_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=NSUN2 PE=1 SV=1 F1S0R7_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=CFI PE=1 SV=2 F1S133_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=PTRH2 PE=1 SV=1 F1S227_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=LOC100627133 PE=4 SV=1 F1S5J8_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LAMC2 PE=4 SV=1 F1S662_PIG (+1) 0 0 4

Uncharacterized protein OS=Sus scrofa GN=COPE PE=1 SV=1 F1S7E0_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=IAH1 PE=1 SV=2 F1SA96_PIG 0 4 0

MICOS complex subunit MIC13 OS=Sus scrofa GN=QIL1 PE=4 SV=1 F1SBU8_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=DNAJA1 PE=1 SV=1 F1SE73_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=PSMD6 PE=1 SV=2 F1SGF1_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=C15orf48 PE=1 SV=1 F1SN46_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=EIF1AX PE=3 SV=1 F1SQN5_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=CLEC3B PE=1 SV=1 F1SRC8_PIG 0 4 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=COL15A1 PE=1

SV=2 F1SSE7_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=LANCL1 PE=1 SV=2 F1SSS1_PIG 0 3 0

Sodium/potassium-transporting ATPase subunit beta OS=Sus scrofa PE=3

SV=1 F1STW3_PIG 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ARRB1 PE=1

SV=2 F1SUN0_PIG 0 4 0

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Uncharacterized protein OS=Sus scrofa GN=NUP98 PE=1 SV=2 F1SUZ2_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=PSMD7 PE=1 SV=1 I3L6B9_PIG 0 4 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=MCM3 PE=1

SV=1 I3L7E5_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=PRPF6 PE=1 SV=1 I3L7Q4_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=BAZ1B PE=1 SV=1 I3LCE6_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=UBE2V1 PE=1 SV=1 I3LFW6_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100520636

PE=1 SV=1 I3LLE3_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=BLVRB PE=1 SV=1 I3LQH7_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=PEPD PE=1 SV=1 I3LR43_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LR51_PIG 0 4 0

Serine/arginine-rich-splicing factor 2 (Fragment) OS=Sus scrofa

GN=SRSF2 PE=1 SV=1 I3LRW8_PIG (+1) 0 0 4

Pyridoxal kinase (Fragment) OS=Sus scrofa GN=PDXK PE=1 SV=1 I3LV69_PIG (+1) 0 4 0

Uncharacterized protein OS=Sus scrofa GN=VBP1 PE=1 SV=1 K7GNY9_PIG 0 3 0

Transmembrane 9 superfamily member 2 OS=Sus scrofa GN=TM9SF2

PE=2 SV=1 K9IVV3_PIG 0 0 4

UPF0556 protein C19orf10 OS=Sus scrofa GN=C19orf10 PE=2 SV=1 M3UZ63_PIG 0 4 0

Low molecular weight phosphotyrosine protein phosphatase OS=Sus

scrofa GN=ACP1 PE=1 SV=2 PPAC_PIG 0 4 0

ROD1 OS=Sus scrofa GN=ROD1 PE=1 SV=1 Q06A95_PIG 0 0 4

Troponin T fast skeletal muscle type OS=Sus scrofa GN=tnnt3 PE=2 SV=1 Q75NG6_PIG (+7) 0 0 4

Complement regulator factor H OS=Sus scrofa GN=FH PE=2 SV=1 Q8MI72_PIG 0 3 0

Beta-catenin OS=Sus scrofa GN=CTNNB1 PE=1 SV=1 Q8WNW4_PIG 0 0 9

Malectin OS=Sus scrofa domesticus GN=MLEC PE=4 SV=1 A0A0B8S049_PIG (+1) 0 0 2

OTUB1 OS=Sus scrofa GN=OTUB1 PE=1 SV=1 C5H0C6_PIG 0 4 0

Cytochrome b-c1 complex subunit 6 OS=Sus scrofa GN=LOC100524873

PE=1 SV=1 F1S3W0_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=SRM PE=1 SV=1 I3LPB8_PIG 0 4 0

NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1

SV=2 NCPR_PIG 0 0 4

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RAB8B, member RAS oncogene family OS=Sus scrofa domesticus

GN=RAB8B PE=4 SV=1 A0A0B8RVJ8_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=TSN PE=1 SV=2 F1RXY7_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100517634

PE=1 SV=1 F1SA62_PIG 0 0 4

DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1 TOP2A_PIG 0 0 7

Uncharacterized protein OS=Sus scrofa GN=COL7A1 PE=4 SV=1 F1SKM1_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ARHGEF6 PE=4

SV=1 I3LMB2_PIG 0 0 3

Complement C5a anaphylatoxin OS=Sus scrofa GN=C5 PE=1 SV=2 F1SME1_PIG (+1) 0 2 0

Actin, alpha skeletal muscle OS=Sus scrofa GN=ACTA1 PE=3 SV=1 ACTS_PIG 0 0 59

Uncharacterized protein OS=Sus scrofa GN=SGTA PE=1 SV=1 F1S8G6_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=LOC100157985 PE=3 SV=2 F1SBX8_PIG (+1) 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SERPINF1 PE=1

SV=1 F6PUK1_PIG (+1) 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LTV1_PIG 0 3 0

Caspase-7 isoform alpha OS=Sus scrofa GN=CASP7 PE=2 SV=1 K9J6J4_PIG 0 2 0

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0W4_PIG 0 46 0

Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B

alpha isoform (Fragment) OS=Sus scrofa GN=PPP2R2A PE=2 SV=1 2ABA_PIG (+1) 0 2 0

Acyl-CoA dehydrogenase, C-2 to C-3 short chain OS=Sus scrofa

domesticus GN=ACADS PE=3 SV=1 A0A0B8RTY5_PIG (+1) 0 2 0

Glycylpeptide N-tetradecanoyltransferase OS=Sus scrofa domesticus

GN=NMT1 PE=3 SV=1 A0A0B8RVP0_PIG (+1) 0 2 0

Lactadherin OS=Sus scrofa GN=MFGE8 PE=1 SV=1 B2CZF8_PIG (+1) 0 2 0

Actin-related protein 2/3 complex subunit 5 OS=Sus scrofa GN=ARPC5

PE=1 SV=1 B5APV0_PIG 0 2 0

Actinin-associated LIM protein 1a OS=Sus scrofa GN=PDLIM3 PE=1

SV=1 D3GGC5_PIG (+4) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TXNDC17 PE=1 SV=1 F1RGM3_PIG 0 2 0

Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa GN=FKBP2 PE=1

SV=1 F1RQ06_PIG 0 2 0

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Uncharacterized protein OS=Sus scrofa GN=TRMT112 PE=1 SV=2 F1RQP1_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=LCP2 PE=4 SV=2 F1RRX4_PIG 0 2 0

Eosinophil peroxidase (Fragment) OS=Sus scrofa GN=EPX PE=1 SV=2 F1RSB4_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=GSTZ1 PE=1 SV=2 F1S2N0_PIG (+4) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PDCD4 PE=1 SV=2 F1S5L7_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=IFI44 PE=1 SV=1 F1S9T2_PIG (+1) 0 2 0

DEAD (Asp-Glu-Ala-Asp) box helicase 6 OS=Sus scrofa GN=DDX6

PE=1 SV=1 F1SAJ5_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=DDX39A PE=1 SV=2 F1SCH3_PIG 0 14 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RAD23A PE=1

SV=1 F1SD96_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=LOC100518399 PE=1 SV=2 F1SPF6_PIG 0 5 0

Uncharacterized protein OS=Sus scrofa GN=HINT2 PE=1 SV=1 F1STB2_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=RAB10 PE=1 SV=1 F2Z5F2_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=ABI1 PE=4 SV=1 I3L5P8_PIG (+1) 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=CARHSP1 PE=1

SV=1 I3LCU9_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=RPA3 PE=1 SV=1 I3LFZ2_PIG 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RCN3 PE=1

SV=1 I3LMU6_PIG 0 2 0

Proteasome activator complex subunit 3 OS=Sus scrofa GN=PSME3 PE=1

SV=1 K9IWE8_PIG (+1) 0 2 0

60S ribosomal protein L7 (Fragment) OS=Sus scrofa PE=2 SV=1 Q6QAS9_PIG 0 11 0

130 kDa regulatory subunit of myosin phosphatase (Fragment) OS=Sus

scrofa PE=2 SV=1 Q9TV77_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PPP2R5C PE=1 SV=2 F1S9Y5_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TBCD PE=1 SV=2 F1RZZ1_PIG 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=EIF4G2 PE=1

SV=2 F1S6V4_PIG 0 2 0

Splicing factor, arginine/serine-rich 11 OS=Sus scrofa GN=SFRS11 PE=1

SV=1 Q19QT0_PIG 0 2 0

Tyrosine-protein kinase OS=Sus scrofa domesticus GN=LYN PE=3 SV=1 A0A0B8RVQ8_PIG (+2) 0 2 0

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Glycoprotein (Transmembrane) nmb OS=Sus scrofa domesticus

GN=GPNMB PE=4 SV=1 A0A0B8S077_PIG (+1) 0 0 2

CD48 molecule OS=Sus scrofa domesticus GN=CD48 PE=4 SV=1 A0A0B8S0A6_PIG (+1) 0 0 2

ATP synthase subunit f, mitochondrial OS=Sus scrofa GN=ATP5J2 PE=3

SV=4 ATPK_PIG (+1) 0 0 2

MHC class I antigen OS=Sus scrofa GN=SLA-2 PE=2 SV=1 B1A9N7_PIG (+1) 0 0 12

Selenoprotein H OS=Sus scrofa GN=SELH PE=2 SV=1 D6QZ31_PIG 0 0 2

Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3 DEST_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=FEN1 PE=1 SV=1 F1RKS3_PIG 0 0 2

Amino acid transporter (Fragment) OS=Sus scrofa GN=SLC1A5 PE=1

SV=1 F1RM08_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LAMP1 PE=1 SV=1 F1RN44_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=PRPF31 PE=1 SV=2 F1RNI3_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NFKBIE PE=4

SV=2 F1RQU0_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LOC100738725 PE=4 SV=1 F1RQU9_PIG (+2) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=DRAP1 PE=1 SV=1 F1RU28_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=EEF1E1 PE=1 SV=1 F1RVA1_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=EXOC2 PE=1 SV=1 F1RXP8_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1S3K5_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=VPS45 PE=1 SV=2 F1SDG5_PIG 0 0 2

Thioredoxin reductase 1, cytoplasmic OS=Sus scrofa GN=TXNRD1 PE=1

SV=2 F1SG38_PIG (+1) 2 0 0

Uncharacterized protein OS=Sus scrofa GN=CD44 PE=1 SV=2 F1SGT4_PIG (+6) 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NUP160 PE=1

SV=2 F1SIF8_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=RAP2B PE=4 SV=2 F1SJM5_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=MACF1 PE=1 SV=2 F1SV22_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=NDUFS5 PE=1 SV=1 F1SV23_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100621713

PE=1 SV=1 F1SV93_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LOC100158185 PE=1 SV=1 F2Z565_PIG 0 0 14

Page 55: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Phospholipid hydroperoxide glutathione peroxidase, mitochondrial

OS=Sus scrofa GN=GPX4 PE=1 SV=3 GPX4_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=VAPA PE=1

SV=1 I3L5C0_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SDPR PE=1

SV=1 I3LDR9_PIG 0 0 2

Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Sus scrofa

GN=COX4I1 PE=1 SV=1 I3LER5_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=SMCHD1 PE=1 SV=1 I3LPX9_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LR86_PIG 0 0 2

60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1 RL7L_PIG 0 0 2

RRP12-like protein OS=Sus scrofa domesticus GN=RRP12 PE=4 SV=1 A0A0B8RT92_PIG (+1) 0 0 2

ATP synthase protein 8 OS=Sus scrofa GN=MT-ATP8 PE=3 SV=2 ATP8_PIG (+3) 0 0 2

Cornifin OS=Sus scrofa GN=SPRP PE=4 SV=1 I3LSW4_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=CBX1 PE=1 SV=2 F1RWH1_PIG 0 0 3

40S ribosomal protein S27 (Fragment) OS=Sus scrofa GN=RPS27 PE=1

SV=2 F2Z514_PIG (+1) 0 0 2

Aspartate aminotransferase, cytoplasmic OS=Sus scrofa GN=GOT1 PE=1

SV=3 AATC_PIG 0 2 0

N-acylethanolamine acid amidase OS=Sus scrofa domesticus GN=NAAA

PE=4 SV=1 A0A0B8RZC6_PIG (+1) 0 2 0

Basigin (Ok blood group) OS=Sus scrofa domesticus GN=BSG PE=4

SV=1 A0A0B8RT65_PIG (+1) 0 0 3

Golgi glycoprotein 1 OS=Sus scrofa domesticus GN=GLG1 PE=4 SV=1

A0A0B8RVW2_PIG

(+1) 0 0 3

Nuclear pore complex protein Nup205 OS=Sus scrofa domesticus

GN=NUP205 PE=4 SV=1 A0A0B8RZB4_PIG 0 0 3

Ectonucleoside triphosphate diphosphohydrolase 1 OS=Sus scrofa

domesticus GN=ENTPD1 PE=3 SV=1 A0A0B8RZL3_PIG (+5) 0 0 3

Nuclear pore complex protein Nup107 OS=Sus scrofa domesticus

GN=NUP107 PE=4 SV=1 A0A0B8S040_PIG (+1) 0 0 3

Acyl-CoA synthetase long-chain family member 1 OS=Sus scrofa A0A0B8S0C6_PIG (+2) 0 0 3

Page 56: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

domesticus GN=ACSL1 PE=4 SV=1

Protein phosphatase 2, regulatory subunit B (B56), delta isoform OS=Sus

scrofa GN=PPP2R5D PE=1 SV=1 A5GFQ9_PIG 0 0 3

Tyrosine-protein phosphatase non-receptor type OS=Sus scrofa

GN=PTPN1 PE=3 SV=1 A5GHK9_PIG 0 0 3

Cathepsin H variant 2 OS=Sus scrofa GN=CTSH PE=2 SV=1 A7UNV1_PIG (+4) 0 3 0

Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 ACPH_PIG (+2) 0 3 0

Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa

GN=ATP1A1 PE=1 SV=1 AT1A1_PIG (+4) 0 3 0

Mitogen-activated protein kinase kinase 1 OS=Sus scrofa GN=MAP2K1

PE=2 SV=1 B8XSJ8_PIG 0 3 0

Mitochondrial translocase of outer membrane protein OS=Sus scrofa

GN=TOMM40 PE=2 SV=1 D0V557_PIG 0 0 3

Calcium-transporting ATPase OS=Sus scrofa GN=ATP2A1 PE=1 SV=1 F1RFH9_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=TMEM109 PE=1 SV=1 F1RIA7_PIG 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100154801

PE=1 SV=2 F1RIB4_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC100525876 PE=1 SV=2 F1RJE4_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC494560 PE=1 SV=1 F1RM62_PIG 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=CARS PE=1

SV=2 F1RYA3_PIG 0 3 0

U1 small nuclear ribonucleoprotein C OS=Sus scrofa GN=SNRPC PE=1

SV=1 F1RZ16_PIG 0 0 3

Histone deacetylase OS=Sus scrofa GN=HDAC2 PE=1 SV=2 F1RZK8_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=SYNPO2 PE=1 SV=2 F1S156_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=NDUFS2 PE=1 SV=1 F1S1A8_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=NQO1 PE=1 SV=1 F1S395_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=TMED9 PE=1

SV=2 F1S3E0_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=TMED5 PE=1 SV=1 F1S533_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=RASAL3 PE=4 SV=2 F1SA02_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LAMB1 PE=1 SV=2 F1SAE9_PIG 0 0 3

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Carboxypeptidase OS=Sus scrofa GN=CTSA PE=1 SV=2 F1SC70_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1SC82_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC100738983 PE=1 SV=2 F1SFH7_PIG 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ACTL6A PE=1

SV=2 F1SGC8_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=BIN2 PE=4 SV=2 F1SH84_PIG 0 4 0

Uncharacterized protein OS=Sus scrofa GN=CKMT1B PE=1 SV=1 F1SI77_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=PNN PE=1 SV=1 F1SIQ0_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=SMARCA2 PE=1 SV=2 F1SJG5_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC100736826 PE=1 SV=2 F1SJM2_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=ERGIC1 PE=1 SV=2 F1SJY1_PIG 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=TOMM22 PE=1

SV=1 F1SLC2_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=HMGCS1 PE=1 SV=2 F1SMG8_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=SERPINB10 PE=3 SV=1 F1SMW8_PIG 0 3 0

MYL3 OS=Sus scrofa GN=MYL3 PE=1 SV=1 F1SNW4_PIG 0 0 8

Uncharacterized protein OS=Sus scrofa GN=CUL3 PE=1 SV=2 F1SR61_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=ATIC PE=1 SV=1 F1SS25_PIG 0 3 0

Tyrosine-protein kinase OS=Sus scrofa GN=ZAP70 PE=3 SV=2 F1STD6_PIG (+1) 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=2 F1SUZ5_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=PEA15 PE=1

SV=2 F2Z523_PIG 0 3 0

Histone H2A OS=Sus scrofa GN=HIST1H2AB PE=1 SV=1 F2Z587_PIG 0 0 33

Uncharacterized protein OS=Sus scrofa GN=SPCS3 PE=1 SV=1 F2Z5C8_PIG 0 0 3

Flotillin-1 OS=Sus scrofa GN=FLOT1 PE=3 SV=1 FLOT1_PIG 0 0 3

Epoxide hydrolase 1 OS=Sus scrofa GN=EPHX1 PE=2 SV=1 HYEP_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=HNRNPH2 PE=1 SV=1 I3L687_PIG 0 0 10

Uncharacterized protein OS=Sus scrofa GN=EVL PE=4 SV=1 I3LI42_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LJX2_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=ETHE1 PE=1 SV=1 I3LLM9_PIG 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=TRADD PE=4 I3LPQ9_PIG 0 0 3

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SV=1

Uncharacterized protein OS=Sus scrofa GN=RAP1GDS1 PE=1 SV=1 I3LQI9_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa PE=1 SV=1 I3LRK1_PIG 0 0 5

Uncharacterized protein OS=Sus scrofa GN=LOC100623815 PE=1 SV=1 I3LSJ4_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=FADD PE=1 SV=1 I3LSL7_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100626089 PE=1 SV=1 I3LUM8_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=MECP2 PE=1 SV=1 K7GM47_PIG 0 0 3

Integrin beta OS=Sus scrofa GN=ITGB4 PE=1 SV=1 K7GP66_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LOC100515538 PE=1 SV=1 K7N7E7_PIG 0 0 3

Endoplasmic reticulum aminopeptidase 2 OS=Sus scrofa GN=ERAP2

PE=2 SV=1 K9J4P1_PIG 0 3 0

Myosin regulatory light polypeptide 9 OS=Sus scrofa GN=MYL9 PE=1

SV=2 MYL9_PIG 0 0 11

Myozenin-1 OS=Sus scrofa GN=MYOZ1 PE=2 SV=1 MYOZ1_PIG 0 0 3

UBC1 OS=Sus scrofa GN=UBE2K PE=1 SV=1 Q06AB2_PIG 0 3 0

Proteasome subunit beta type OS=Sus scrofa GN=LOC100520085 PE=1

SV=1 Q2PYM7_PIG 0 3 0

Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Sus scrofa

GN=UCHL3 PE=2 SV=1 UCHL3_PIG 0 3 0

Fast skeletal muscle troponin C OS=Sus scrofa GN=TNNC2 PE=1 SV=2 A1XQV5_PIG (+2) 0 0 3

Progesterone receptor membrane component 2 OS=Sus scrofa

GN=PGRMC2 PE=1 SV=1 A3RKG5_PIG (+1) 0 0 4

Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Sus

scrofa GN=SDHC PE=1 SV=2 C560_PIG 0 0 3

Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Sus scrofa

GN=DHDH PE=1 SV=1 DHDH_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=CPB2 PE=1 SV=2 F1RK01_PIG 0 3 0

Cytokine receptor-like factor 3 OS=Sus scrofa GN=CRLF3 PE=1 SV=2 F1RKV7_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=COL1A1 PE=4 SV=2 F1RT61_PIG (+1) 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=COL5A1 PE=1

SV=2 F1S021_PIG (+1) 0 0 3

Ribose-5-phosphate isomerase OS=Sus scrofa GN=RPIA PE=1 SV=1 F1STC1_PIG (+1) 0 3 0

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Uncharacterized protein OS=Sus scrofa GN=LSM6 PE=3 SV=1 F2Z5C5_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100621067 PE=1 SV=1 I3LBP7_PIG 0 3 0

Oxysterol-binding protein OS=Sus scrofa GN=OSBPL8 PE=1 SV=1 I3LKX6_PIG (+1) 0 0 3

Uncharacterized protein (Fragment) OS=Sus scrofa GN=AFG3L2 PE=1

SV=1 I3LLQ8_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LXN PE=1 SV=1 I3LN84_PIG 0 3 0

Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1 PTGR1_PIG 0 3 0

Proteasome 26S subunit non-ATPase 4 OS=Sus scrofa GN=PSMD4 PE=1

SV=1 Q32YV9_PIG 0 3 0

Galectin-4 OS=Sus scrofa GN=LGALS4 PE=2 SV=1 LEG4_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=SBDS PE=1 SV=1 F1RJJ3_PIG 0 3 0

Reticulon OS=Sus scrofa GN=RTN3 PE=1 SV=2 F1RPY3_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=RPS6KA3 PE=1 SV=3 F1SQN4_PIG (+1) 0 3 0

Branched-chain-amino-acid aminotransferase OS=Sus scrofa GN=BCAT2

PE=1 SV=2 F1RL80_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TXNL1 PE=1 SV=1 F1S1X9_PIG 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=CALU PE=1

SV=2 F1SMN1_PIG (+1) 0 0 2

Proteasome subunit beta type OS=Sus scrofa GN=PSMB4 PE=1 SV=1 F1ST02_PIG 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=SGPL1 PE=1

SV=2 F1SUB2_PIG (+1) 0 0 2

Peptidyl-prolyl cis-trans isomerase (Fragment) OS=Sus scrofa GN=FKBP3

PE=1 SV=2 F1SI13_PIG 0 2 0

Single-stranded DNA-binding protein OS=Sus scrofa GN=SSBP1 PE=1

SV=1 F1SRQ7_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NEDD8 PE=1

SV=1 I3LET0_PIG 0 2 0

Insulin-degrading enzyme OS=Sus scrofa domesticus GN=IDE PE=3

SV=1 A0A0B8RVT7_PIG (+1) 0 2 0

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Sus

scrofa GN=LOC100520950 PE=4 SV=1 F1RGE3_PIG 0 0 2

Negative elongation factor D OS=Sus scrofa GN=NELFCD PE=3 SV=1 NELFD_PIG 0 0 2

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SH3-domain kinase binding protein 1 OS=Sus scrofa domesticus

GN=SH3KBP1 PE=4 SV=1 A0A0B8RSA2_PIG (+3) 0 2 0

Calcium-transporting ATPase OS=Sus scrofa GN=ATP2B4 PE=2 SV=1 M3TYK5_PIG 0 0 2

Utrophin OS=Sus scrofa GN=UTRN PE=2 SV=1 K9J6K2_PIG 0 0 2

Cyclic GMP-AMP synthase OS=Sus scrofa GN=MB21D1 PE=1 SV=1 CGAS_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=AP1M1 PE=1 SV=1 F2Z5I7_PIG 0 2 0

Caspase 6, apoptosis-related cysteine peptidase OS=Sus scrofa domesticus

GN=CASP6 PE=3 SV=1 A0A0B8S0B0_PIG (+1) 0 4 0

Prothymosin alpha OS=Sus scrofa PE=2 SV=1 C3VVV8_PIG (+2) 0 3 0

Cleavage and polyadenylation specific factor 6 OS=Sus scrofa GN=CPSF6

PE=2 SV=1 D3K5M7_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=SUGT1 PE=1 SV=1 F1RJ74_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=HMOX2 PE=1 SV=1 F1RK58_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=ACOT6 PE=1 SV=2 F1S3J0_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100127131 PE=1 SV=1 F1SHC1_PIG 0 0 43

Uncharacterized protein OS=Sus scrofa PE=1 SV=2 F1SQK1_PIG 0 0 3

Glutathione S-transferase kappa 1 OS=Sus scrofa GN=GSTK1 PE=1 SV=1 F1SRV4_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=EIF4G3 PE=1 SV=2 F1SU05_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=MFAP2 PE=1 SV=1 F1SUS0_PIG 0 0 3

Histone H3 OS=Sus scrofa GN=LOC100622412 PE=1 SV=1 F2Z5K9_PIG 0 0 13

Hemoglobin subunit beta OS=Sus scrofa GN=HBB PE=1 SV=3 HBB_PIG 0 0 16

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ABHD14B PE=1

SV=1 I3LAQ6_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=PCOLCE PE=1 SV=1 I3LEE6_PIG 0 3 0

Branched-chain-amino-acid aminotransferase OS=Sus scrofa GN=BCAT1

PE=1 SV=1 I3LKW2_PIG (+1) 0 3 0

Uncharacterized protein OS=Sus scrofa GN=PPA2 PE=1 SV=1 I3LM66_PIG 0 3 0

IgG heavy chain OS=Sus scrofa GN=IGHG PE=2 SV=1 L8B0U1_PIG 0 40 0

14 kDa phosphohistidine phosphatase (Fragments) OS=Sus scrofa

GN=PHPT1 PE=1 SV=1 PHP14_PIG 0 3 0

Uncharacterized protein OS=Sus scrofa GN=LOC100519316 PE=1 SV=1 F1RNK3_PIG (+1) 0 0 2

Alpha-1,4 glucan phosphorylase OS=Sus scrofa GN=PYGM PE=1 SV=2 F1RQQ8_PIG 0 5 0

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COP9 constitutive photomorphogenic-like subunit 5 OS=Sus scrofa

GN=COPS5 PE=2 SV=1 A7TX80_PIG (+1) 0 3 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=FNBP1 PE=1

SV=2 F1RQE2_PIG 0 3 0

Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta

isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1 2AAB_PIG (+1) 0 0 6

Membrane cofactor protein OS=Sus scrofa PE=2 SV=1 A0A024CBD6_PIG (+1) 0 0 2

NADH-ubiquinone oxidoreductase chain 1 OS=Sus scrofa domesticus

GN=ND1 PE=3 SV=1 A0A076ED58_PIG (+29) 0 0 2

Symplekin (Fragment) OS=Sus scrofa domesticus GN=SYMPK PE=4

SV=1 A0A0B8RS80_PIG (+1) 0 0 2

Legumain OS=Sus scrofa domesticus GN=LGMN PE=4 SV=1 A0A0B8RSP0_PIG (+1) 0 2 0

RNA binding motif protein 25 OS=Sus scrofa domesticus GN=RBM25

PE=4 SV=1 A0A0B8RTA7_PIG 0 0 2

Galectin OS=Sus scrofa domesticus GN=LGALS9 PE=4 SV=1 A0A0B8RTI7_PIG (+4) 0 0 2

Elastin microfibril interfacer 2 OS=Sus scrofa domesticus GN=EMILIN2

PE=4 SV=1 A0A0B8RTQ8_PIG (+1) 0 0 2

V-crk avian sarcoma virus CT10 oncogene-like OS=Sus scrofa domesticus

GN=CRKL PE=4 SV=1 A0A0B8RTT8_PIG (+1) 0 2 0

Protein FAM111A OS=Sus scrofa domesticus GN=FAM111A PE=4 SV=1 A0A0B8RZL2_PIG (+1) 0 2 0

Derlin 1 OS=Sus scrofa domesticus GN=DERL1 PE=4 SV=1 A0A0B8RZM1_PIG 0 0 2

Stromal interaction molecule 1 OS=Sus scrofa domesticus GN=STIM1

PE=4 SV=1 A0A0B8S001_PIG (+3) 0 0 2

Carbonyl reductase 3 OS=Sus scrofa GN=CBR3 PE=2 SV=1 A0A0K1TQQ7_PIG (+1) 0 3 0

C1 inhibitor OS=Sus scrofa GN=C1-INH PE=2 SV=1 A0PA00_PIG (+1) 0 2 0

Major histocompatibility complex, class II, DO beta OS=Sus scrofa

GN=SLA-DOB PE=4 SV=1 A5D9J8_PIG (+2) 0 0 2

Ring finger protein 1 OS=Sus scrofa GN=RING1 PE=1 SV=1 A5D9P0_PIG 0 0 2

Apolipoprotein A-IV OS=Sus scrofa GN=APOA4 PE=2 SV=1 APOA4_PIG (+1) 0 0 2

Perilipin (Fragment) OS=Sus scrofa GN=PLIN PE=4 SV=1 B1VD75_PIG (+2) 0 0 2

Troponin I OS=Sus scrofa GN=TnI-F4 PE=2 SV=1 B3VI70_PIG (+1) 0 0 2

Adenylosuccinate lyase OS=Sus scrofa GN=ADSL PE=2 SV=1 B3VMQ9_PIG (+1) 0 2 0

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MHC class II antigen (Fragment) OS=Sus scrofa GN=SLA-DQB PE=4

SV=1 B6DU07_PIG 0 0 2

V-crk sarcoma virus CT10 oncogene-like protein isoform a OS=Sus scrofa

PE=2 SV=1 B6DX82_PIG (+1) 0 2 0

Tyrosine-protein kinase OS=Sus scrofa GN=LCK PE=2 SV=1 B8XSK4_PIG (+1) 0 0 2

Selenocysteine lyase (Fragment) OS=Sus scrofa GN=SCLY PE=2 SV=1 C3VEW6_PIG (+1) 0 2 0

Bifunctional coenzyme A synthase OS=Sus scrofa GN=COASY PE=1

SV=1 COASY_PIG 0 2 0

Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17

PE=1 SV=1 COX17_PIG (+1) 0 2 0

Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3 CYB5_PIG 0 0 2

Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit

OS=Sus scrofa GN=DPM1 PE=2 SV=1 D0G6S4_PIG (+1) 0 0 2

Acyl carrier protein OS=Sus scrofa GN=NDUFAB1 PE=2 SV=1 D0G781_PIG (+1) 0 0 2

Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial

OS=Sus scrofa GN=ETFDH PE=1 SV=2 ETFD_PIG (+1) 0 0 2

Proteasome subunit beta type OS=Sus scrofa GN=PSMB6 PE=1 SV=2 F1RFV5_PIG (+1) 0 2 0

Eukaryotic translation initiation factor 3 subunit K OS=Sus scrofa

GN=EIF3K PE=1 SV=2 F1RI41_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=FAH PE=1 SV=1 F1RIF3_PIG 0 2 0

Ferritin OS=Sus scrofa GN=FTL PE=1 SV=1 F1RIP3_PIG (+1) 0 0 2

Calsequestrin OS=Sus scrofa GN=CASQ1 PE=1 SV=2 F1RJW7_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=PPM1F PE=1 SV=1 F1RL04_PIG 0 2 0

DNA ligase (Fragment) OS=Sus scrofa GN=LIG1 PE=1 SV=1 F1RL99_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=WDR36 PE=4 SV=2 F1RLI4_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=PDAP1 PE=1 SV=1 F1RNS8_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PSMD14 PE=1 SV=2 F1RPQ3_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=MPC2 PE=1 SV=2 F1RPU8_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=ASRGL1 PE=1 SV=2 F1RPW8_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=CYFIP2 PE=1 SV=2 F1RQE9_PIG 0 9 0

Anion exchange protein (Fragment) OS=Sus scrofa GN=SLC4A1 PE=1

SV=2 F1RQY6_PIG (+1) 0 0 2

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Uncharacterized protein OS=Sus scrofa GN=SEPT4 PE=1 SV=2 F1RRN6_PIG (+1) 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=MYL4 PE=4

SV=2 F1RRT2_PIG 0 0 4

Uncharacterized protein OS=Sus scrofa GN=POSTN PE=1 SV=1 F1RS37_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ARFIP1 PE=1

SV=2 F1RSB0_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=MCM4 PE=1 SV=2 F1RSE7_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=SMARCD2 PE=4 SV=1 F1RSJ9_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LOC100625101 PE=4 SV=1 F1RSL4_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=COMMD3 PE=1 SV=1 F1RVH4_PIG 0 2 0

V-type proton ATPase subunit a OS=Sus scrofa GN=TCIRG1 PE=1 SV=2 F1RVP8_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=IKZF3 PE=4 SV=2 F1RX95_PIG 0 0 3

Uncharacterized protein OS=Sus scrofa GN=COL3A1 PE=1 SV=2 F1RYI8_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=ACSS3 PE=1 SV=2 F1RYM4_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LPCAT1 PE=1 SV=1 F1S029_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=STK3 PE=1 SV=2 F1S0N6_PIG (+1) 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=TSTD1 PE=1

SV=2 F1S179_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=UAP1 PE=1 SV=2 F1S210_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=RCSD1 PE=1 SV=2 F1S269_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=EDC4 PE=4 SV=2 F1S2J4_PIG (+2) 0 0 2

Uroporphyrinogen decarboxylase OS=Sus scrofa GN=UROD PE=1 SV=2 F1S365_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=AP1G1 PE=1 SV=2 F1S3C7_PIG (+1) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PAPLN PE=1 SV=2 F1S3J7_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=RFC1 PE=4 SV=2 F1S4I7_PIG 0 0 2

Calponin OS=Sus scrofa GN=CNN3 PE=1 SV=1 F1S543_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=AGL PE=1 SV=1 F1S557_PIG 0 2 0

Guanylate kinase OS=Sus scrofa GN=GUK1 PE=1 SV=2 F1S5R9_PIG (+1) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TXNDC12 PE=1 SV=2 F1S6G4_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TUBB3 PE=1 SV=1 F1S6M7_PIG 0 0 35

Uncharacterized protein OS=Sus scrofa GN=GMIP PE=4 SV=2 F1S7C3_PIG 0 2 0

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Uncharacterized protein OS=Sus scrofa GN=MYOC PE=1 SV=2 F1S7T0_PIG (+1) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=DDRGK1 PE=1 SV=2 F1S8B0_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=OSGEP PE=1 SV=2 F1S8H4_PIG 0 2 0

Signal recognition particle 9 kDa protein OS=Sus scrofa GN=SRP9 PE=1

SV=1 F1S8R5_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PTGIS PE=1 SV=1 F1SBE5_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=EMILIN1 PE=1 SV=1 F1SDQ5_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=PREB PE=1 SV=2 F1SED4_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa PE=4 SV=2 F1SFD6_PIG (+1) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TMX1 PE=1 SV=1 F1SFF6_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=RFC4 PE=4 SV=2 F1SFI3_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=AAAS PE=1 SV=2 F1SFR0_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=INTS3 PE=1 SV=2 F1SFW4_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=KRT75 PE=1

SV=2 F1SGI7_PIG 0 0 14

Ribosome biogenesis protein WDR12 OS=Sus scrofa GN=WDR12 PE=1

SV=1 F1SHE8_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=ESYT2 PE=1

SV=2 F1SHW1_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=NDUFA10 PE=1 SV=1 F1SIS9_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=SIN3A PE=1 SV=2 F1SJ69_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=PGM5 PE=1 SV=2 F1SJE6_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TXN2 PE=1 SV=1 F1SKJ2_PIG 0 2 0

Fibulin-1 OS=Sus scrofa GN=FBLN1 PE=1 SV=1 F1SM61_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=GLS PE=1 SV=2 F1SN47_PIG (+1) 0 2 0

Peptidyl-prolyl cis-trans isomerase (Fragment) OS=Sus scrofa

GN=FKBP15 PE=1 SV=1 F1SN89_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=FBLN2 PE=1 SV=2 F1SPG5_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=UMPS PE=1 SV=2 F1SQ55_PIG (+1) 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NDUFA12 PE=1

SV=1 F1SQP4_PIG 0 0 2

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Uncharacterized protein OS=Sus scrofa GN=BLVRA PE=1 SV=1 F1SSF5_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TNS3 PE=1 SV=2 F1ST78_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 F1SU00_PIG 0 0 2

Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Sus

scrofa GN=CIAO1 PE=3 SV=2 F1SU35_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=LOC100522130 PE=1 SV=2 F1SU52_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TCEB2 PE=1 SV=1 F1SUG4_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PEF1 PE=1 SV=2 F1SVA0_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=SNRNP40 PE=1 SV=2 F1SVA6_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=SMARCB1 PE=1 SV=1 F2Z4X9_PIG 0 0 2

Ubiquitin-fold modifier-conjugating enzyme 1 OS=Sus scrofa GN=UFC1

PE=1 SV=1 F2Z530_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=CETN2 PE=1 SV=1 F2Z563_PIG (+3) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=TIAL1 PE=1 SV=2 F2Z5F9_PIG 0 2 0

Serine/threonine-protein phosphatase OS=Sus scrofa GN=PPP6C PE=1

SV=1 F2Z5N6_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=MYCBP PE=1 SV=1 F2Z5W0_PIG 0 0 2

IFITM2 OS=Sus scrofa GN=IFITM2 PE=2 SV=1 F4ZS15_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=WIPF1 PE=4 SV=1 I3L5A6_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=EHD3 PE=1 SV=1 I3L7R0_PIG 0 6 0

Uncharacterized protein OS=Sus scrofa GN=LOC100737730 PE=4 SV=1 I3L9K8_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=NRBP1 PE=1 SV=1 I3LA44_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=TUBB6 PE=1 SV=1 I3LBV1_PIG 0 0 22

Uncharacterized protein OS=Sus scrofa GN=SRRM2 PE=1 SV=1 I3LCW3_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=USP24 PE=4 SV=1 I3LGC6_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PKP1 PE=1 SV=1 I3LGN8_PIG 0 0 2

RNA-binding protein 8A OS=Sus scrofa GN=RBM8A PE=1 SV=1 I3LI59_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=MYH14 PE=1 SV=1 I3LIE3_PIG 0 0 8

Uncharacterized protein OS=Sus scrofa GN=GALE PE=1 SV=1 I3LL84_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=SAMM50 PE=1 SV=1 I3LLW3_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa PE=1 SV=1 I3LLW7_PIG 0 0 2

Page 66: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein OS=Sus scrofa GN=NDUFB4 PE=1 SV=1 I3LPW0_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=NT5C PE=1 SV=1 I3LQS2_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=NCCRP1 PE=4 SV=1 I3LR13_PIG 0 2 0

E3 ubiquitin/ISG15 ligase TRIM25 OS=Sus scrofa GN=TRIM25 PE=2

SV=1 K9IWC7_PIG 0 0 2

Metaxin-2 OS=Sus scrofa GN=MTX2 PE=2 SV=1 MTX2_PIG 0 0 2

Phostensin OS=Sus scrofa GN=PPP1R18 PE=3 SV=1 PPR18_PIG 0 2 0

GBAK OS=Sus scrofa GN=GNAI3 PE=1 SV=1 Q06AS8_PIG 0 0 10

Microsomal glutathione S-transferase 3 OS=Sus scrofa GN=MGST3 PE=1

SV=1 Q2EN77_PIG 0 0 2

Resistin OS=Sus scrofa GN=RETN PE=1 SV=1 Q6QR67_PIG 0 0 2

Calcium/calmodulin-dependent protein kinase II isoform gamma-G

OS=Sus scrofa GN=CAMK2G PE=1 SV=1 Q7JFN2_PIG (+2) 0 0 5

MHC class I antigen OS=Sus scrofa GN=SLA-B PE=2 SV=1 Q8MHU3_PIG 0 0 15

Stathmin OS=Sus scrofa GN=STMN1 PE=2 SV=3 STMN1_PIG 0 2 0

Tubulin beta chain OS=Sus scrofa PE=1 SV=1 TBB_PIG 0 0 60

CDGSH iron sulfur domain 1 OS=Sus scrofa PE=2 SV=1 X5FUA3_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=TRAP1 PE=1 SV=2 F1RK45_PIG (+1) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=NSFL1C PE=1 SV=1 F1S880_PIG 0 2 0

Wiskott-Aldrich syndrome OS=Sus scrofa domesticus GN=WAS PE=4

SV=1 A0A0B8RT02_PIG 0 2 0

Protein AMBP (Fragment) OS=Sus scrofa GN=AMBP PE=1 SV=2 AMBP_PIG (+1) 0 2 0

Glucosamine-6-phosphate isomerase OS=Sus scrofa GN=GNPDA1 PE=1

SV=1 F1RM51_PIG 0 2 0

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RAB27B PE=1

SV=2 F1S1Z3_PIG (+1) 0 2 0

Uncharacterized protein OS=Sus scrofa GN=SH3GL1 PE=1 SV=1 F1S7L8_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=LSM7 PE=1 SV=2 F1S8H0_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=PARVG PE=4 SV=1 F1SJU3_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=LSM3 PE=1 SV=1 F2Z5S4_PIG 0 2 0

DCN1-like protein OS=Sus scrofa GN=DCUN1D1 PE=1 SV=1 I3L7H0_PIG 0 2 0

Uncharacterized protein OS=Sus scrofa GN=DUT PE=1 SV=1 I3LFC2_PIG 0 2 0

Page 67: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Vitamin K-dependent protein C OS=Sus scrofa GN=PROC PE=1 SV=1 I3LRJ4_PIG (+1) 0 2 0

T-complex protein 1 subunit epsilon OS=Sus scrofa GN=CCT5 PE=2

SV=1 L7PBE6_PIG 0 12 0

CCCTC-binding factor (Zinc finger protein) OS=Sus scrofa domesticus

GN=CTCF PE=4 SV=1 A0A0B8RT17_PIG (+1) 0 0 2

MLC2v (Fragment) OS=Sus scrofa GN=MLC2V PE=2 SV=1 A1XQV9_PIG (+2) 0 0 2

Signal recognition particle receptor B subunit (Fragment) OS=Sus scrofa

GN=SRPRB PE=4 SV=1 B3CL07_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=OAS2 PE=1 SV=1 F1RKA7_PIG (+1) 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=RFC5 PE=1

SV=1 F1RKG3_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=NDUFB11 PE=1 SV=2 F1RWV4_PIG (+2) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LOC100518332 PE=1 SV=2 F1S187_PIG (+1) 0 0 3

Uncharacterized protein OS=Sus scrofa GN=LETM1 PE=1 SV=2 F1S9F3_PIG (+1) 0 0 2

Uncharacterized protein OS=Sus scrofa GN=DNAJB11 PE=1 SV=1 F1SFJ8_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=WDR82 PE=1 SV=1 F2Z5U3_PIG 0 0 2

Uncharacterized protein (Fragment) OS=Sus scrofa GN=NUP93 PE=1

SV=1 I3LBE6_PIG 0 0 2

Uncharacterized protein OS=Sus scrofa GN=LOC100736849 PE=1 SV=1 I3LJC8_PIG 0 0 2

ADP-ribosylation factor-like protein 6-interacting protein 1 OS=Sus scrofa

GN=ARL6IP1 PE=1 SV=1 I3LN54_PIG 0 0 2

Protein ELYS OS=Sus scrofa GN=AHCTF1 PE=2 SV=1 K9IVS9_PIG 0 0 2

mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1 RAEL1_PIG 0 0 2

Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2

SV=1 TFAM_PIG 0 0 2

Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa

GN=TMCO1 PE=2 SV=1 TMCO1_PIG 0 0 2

Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1 BI1_PIG (+2) 0 0 2

Protein RTF2 homolog OS=Sus scrofa GN=RTFDC1 PE=3 SV=1 RTF2_PIG 0 0 2

Small inducible cytokine subfamily E member 1 OS=Sus scrofa

GN=SCYE1 PE=2 SV=1 B0FWK6_PIG (+1) 0 2 0

Glutathione synthetase OS=Sus scrofa GN=GSS PE=1 SV=2 F1S4X9_PIG 0 2 0

Page 68: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100523652

PE=4 SV=1 A0A075B7I0_PIG (+2) 0 0 2

Page 69: TABLE S1. Identified Proteins (1650) Accession Number PBS ... · 9/8/2016  · GBI2 OS=Sus scrofa GN=GNAI2 PE=1 SV=1 Q06AS6_PIG 13 21 21 Adenylyl cyclase-associated protein OS=Sus

FIG S1. Growth curves of wild type A. suis and isogenic mutants ∆flp1, ∆ompA, and ∆comE1

grown in BHI broth at 37ºC with 200 rpm shaking. Error bars represent standard error of the

mean (SEM). Each data point is an average of at least three independent biological replicates.

0.01

0.1

1

10

0 30 60 90 120 150 180 210 240 270 300

OD

60

0n

m

Time (minutes)

wild type

∆flp1

∆ompA

∆comE1