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Drug-DrugInteractionExtractionfromStructuredDrugLabels
Dina Demner-Fushman1, Kin Wah Fung1, Phong Do2
1 Lister Hill National Center for Biomedical Communications, U.S. National Library of Medicine
2 Office of Health Informatics, U.S. Food and Drug Administration
MechanismsofDrug-DrugInteraction
• A druginteraction resultswhentheeffectsofadrugarealteredinsomewaybythepresenceofanotherdrug,byfood,orbyenvironmentalexposure.
• Theriskofdevelopinganadversedrugreaction(ADR)secondarytoadrug–druginteractionincreasessignificantlywiththenumberofmedicationsapatientisreceiving.
• Mechanismsof druginteractions:• Apharmacodynamic interactionresultswhenadruginterfereswithaseconddrugatits
targetsite,orchangesinsomewayitsanticipatedpharmacologicresponse.Theconsequenceofthisinteractionresultsinadditivity,synergy,orantagonismoftheintendedeffect.Anexampleofapharmacodynamic interactionisthesynergismthatresultsfromcombiningtwoormoreanti-infectives inthetreatmentofaresistantpathogen.
• Pharmacokineticinteractionsoccurwhenonedrugalterstheabsorption,distribution,metabolism,oreliminationofanotherdrug,therebychangingitsconcentrationinplasmaand,consequently,atthetargetedsiteofaction.Clinicallysignificant druginteractions aremostoftenduetoalterationsinpharmacokinetics,secondarytomodulationofdrugmetabolism.
http://www.sciencedirect.com/topics/pharmacology-toxicology-and-pharmaceutical-science/drug-interaction
RelevantSPLsections
BoxedWarning,Contraindications,DosageandAdministration,Drugand/orlaboratorytestinteraction,DrugInteractions,Precautions,WarningsandPrecautions,Warnings
Relatedwork
• AnattempttocombineallpublicallyavailablePDDIssources.• ThemergeddatasetconsistsoffourteendifferentsourcesofPDDIsinformation.
• Ayvaz S,HornJ,Hassanzadeh O,ZhuQ,StanJ,Tatonetti NP,Vilar S,Brochhausen M,Samwald M,Rastegar-Mojarad M,Dumontier M.Towardacompletedatasetofdrug–druginteractioninformationfrompubliclyavailablesources.Journalofbiomedicalinformatics.2015Jun30;55:206-17.
Annotation
• Entities• Drug• Drugclass• Substance• Span/Expression
• Interactionevents• Caution(Unspecified)• Increase/Decrease(Pharmacokinetic)• Specific(Pharmacodynamic)
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Trainingset
Objective
• Identifysubstancesinteractingwiththelabeldrug• Identifyinteractiontype• Providejustification(sentencecontainingtheinteraction)• ProduceoutputforFDAreview:• SentencesfromthedesignatedSPLsections• Sectionname• Thetypeofinteraction– pharmacokinetic,pharmacodynamic orunspecified• Thelabeleddrugandgenericingredient(s)identifiedbytheSPLsetid• TheinteractingsubstanceencodedinUNII,orinNDF-RTNUIifitisadrugclass• TheconsequenceoftheinteractionencodedinSNOMEDCTifitisamedicalcondition,orinNationalCancerInstituteThesauruscodesifitisapharmacokineticeffect
Tasks
• Task1• ExtractInteractingDrugs/Substancesandthesentencesthatcontaininteractions.
• Task2• Identifytheinteractingdrugsandthespecificinteractiontypes:pharmacokinetic,pharmacodynamic orunspecified.
• Task3• NormalizetheinteractingsubstancetoUNII,andthedrugclassestoNDF-RTNUI.NormalizetheconsequenceoftheinteractiontoSNOMEDCTifitisamedicalcondition.NormalizepharmacokineticeffectstoNationalCancerInstituteThesauruscodes.
Data
• Training• NLM-DDICDcorpushttps://lhce-brat.nlm.nih.gov/NLMDDICorpus.htm
• Test• A:AutomaticallyannotatedsentencesreviewedandcorrectedbyFDA• B:Fullymanuallyannotatedsections(simplifiedannotations)