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Chapter 20 Phylogenetic Trees

Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

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Page 1: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Chapter 20Phylogenetic Trees

Page 2: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Figure 20.5

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2

3

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5

Branch point:where lineages diverge

This branch pointrepresents the commonancestor of taxa A−G.

This branch point forms apolytomy: an unresolvedpattern of divergence.

ANCESTRALLINEAGE

Sistertaxa

Basaltaxon

Taxon A

Taxon B

Taxon C

Taxon D

Taxon E

Taxon F

Taxon G

Page 3: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Which animal represents the basal taxon?– Camels

Page 4: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Which animal is least like the others?– Camels

Page 5: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Are pigs and peccaries sister taxa?– Yes, they share an immediate common ancestor.

Page 6: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Did baleen whales evolve from toothed whales?– No! Do not assume that a taxon evolved from the

taxon next to it.

Page 7: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Which are more closely related, hippos and toothed whales or hippos and pecorans?– Hippos and toothed whales

Page 8: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Which are more closely related, hippos and toothed whales or hippos and baleen whales?– You can’t tell from the information given

Page 9: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Species: Panthera pardus

Kingdom: Animalia Domain:

Archaea

Domain:Bacteria

Domain:Eukarya

Genus: Panthera

Order: Carnivora

Family: Felidae

Class: Mammalia

Phylum: Chordata

What level of classification do humans share with leopards?

DomainKingdomPhylumClass

Leopard (common name)

Page 10: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Species: Panthera pardus

Kingdom: Animalia Domain:

Archaea

Domain:Bacteria

Domain:Eukarya

What genus is the leopard in?

Panthera

Leopard (common name)

Page 11: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Concept 20.2: Phylogenies are inferred from morphological and molecular data

• The similarities used to infer phylogenies must result from shared ancestry.

• Bat and bird wings are homologous as forelimbs, but analogous as functional wings.

Page 12: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Evaluating Molecular Homologies

• Analogous structures or molecular sequences are also called homoplasies.

• Molecular homologies are determined based on the degree of similarity in nucleotide sequence between taxa.

• What happens in a frameshift mutation?

• Systematists use computer programs when analyzing comparable DNA segments from different organisms.

Page 13: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

Figure 20.8-4

C C A T C A G A G T C C

C C A T C A G A G T C C

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2

C C A T C A G A G T C C

C C A T C A G A G T C C

G T A

Deletion

Insertion

1

2

C C A T C A A G T C C

G T AC C A T C A A G T C CG

1

2

C C A T C A A G T C C

G T A GC C A T C A A G T C C

1

2

Page 14: Chapter 20 Phylogenetic Trees. Figure 20.5 1234 5 Branch point: where lineages diverge This branch point represents the common ancestor of taxa A−G. This

• Shared bases in nucleotide sequences that are otherwise very dissimilar are called molecular homoplasies.

• About how much DNA would you expect two species to share based on chance alone?

G A T C C AA C G A G T C T A G G C A C T A

C C G G G TT C A A C A C T T T G A C T A G