September 22, 2020BMM 310 - OREN, EE

Bionanodesign LaboratoryDepartment of Biomedical Engineering

Department of Materials Science & Nanotechnology Engineering

TOBB University of Economics and TechnologyAnkara - TURKEY

eeoren@etu.edu.trhttp://eeoren.etu.edu.tr

Dr. Ersin Emre Ören

BMM 310 Numerical Methods in Biomedical Engineering

Introduction to Numerical Methods

September 22, 2020BMM 310 - OREN, EE

BMM 310 course will cover both the theoretical and practical studies in the computational bio(nano)technology andtheoretical materials science areas. Within the frame of this course, students will learn the numerical methods andalgorithms in general.

This course will provide information about describing and solving partial differential equations to model variousbiomedical engineering problems, bioinformatics, molecular dynamics, and homology modeling. This course willalso give practical information about state of the art computer software, which will adapt the students into thisrapidly developing field.

BMM 310 Course Description:

BMM 310 Numerical Methods in BME

2020-2021 Fall Semester:

BMM 310

BMM 310

BMM 310

BMM 310

TOBB ETÜ TM

September 22, 2020BMM 310 - OREN, EE

Evaluation Criteria

Adet Impact (%)Midterm Exams 1 25Quiz+Homework 5+ 25Projects 1 15Final 1 35

Week Subject1 Basic Programming and Algorithms2 Matrix Operations and Root finding3 Matrix Operations and Numerical Integration4 Numerical Methods for Ordinary Differential Equations / Applications5 Numerical Methods for Partial Differential Equations / Applications6 Numerical Methods for Partial Differential Equations / Applications7 Protein Structure Prediction / Molecular Dynamics8 Molecular Dynamics9 Bioinformatics

10 Bioinformatics11 Homology Modeling12 Homology Modeling / Applications

Course Outline

BMM 310 Numerical Methods in BME

September 22, 2020BMM 310 - OREN, EE

http://eeoren.etu.edu.tr/BMM310/

BMM 310 Numerical Methods in BME

Teaching Assistants• Büşra Demir• Çağlanaz Akın

Bionanodesign Laboratory

September 22, 2020BMM 310 - OREN, EE

MBN 310 Numerical Methods in Materials Sci. & Eng.

Lecture Plan

November 09, 2020Withdraw (Dersten Vazgeçme)

October 05, 2020Add/drop (Ekle/Sil)

2020-2021

September 22, 2020BMM 310 - OREN, EE

BMM 310 Numerical Methods in BME

Aims and Scope

International Journal for Numerical Methods in Biomedical Engineering is aninternational journal which publishes both full length and short refereed papersdescribing significant developments in numerical methods and their application tobiomedical engineering problems.

Contributions are encouraged in all areas of biomedical engineering, such as:

• patient-specific modeling,• biofluid and biosolid mechanics,• tissue engineering,• cardiovascular and respiratory mechanics,• tumor modeling,• medical imaging and image processing,• visualization,• meshing,• numerical modeling of organs,• drug delivery,

• surgical simulation,• micro- and nano- mechanics,• multiscale problems,• human body electromagnetics,• molecular biology,• medical device design,• health care models,• numerical methods specially designed for

biomedical problems.

September 22, 2020BMM 310 - OREN, EE

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Molecular Mechanics

Cellular Mechanics

Tissue Mechanics

BMM 310 Numerical Methods in BME

September 22, 2020BMM 310 - OREN, EE

constructs theories, mathematical models andquantitative analysis techniques and uses computersto analyze and solve scientific problems.

Theoretical & Computational Materials Science

simulate the behavior of materials acrossvarious time and length scales.

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Data Analysis / Statistical Learning MethodsBioinformaticsMachine learningNetwork analysisNeuroinformaticsNeurol NetworksWeather forecastPattern recognition ……

one of the fastest growing disciplines.

crucial for characterizing, predicting andsimulating physical events and systems.

September 22, 2020BMM 310 - OREN, EE

Hurricane FLORENCE

September 22, 2020BMM 310 - OREN, EE

Programming & Algorithm

780-850Muḥammad ibn Mūsā al-Khwārizmī

MBN 310 Numerical Methods in Materials Sci. & Eng.