Calit2 - CSE's Living Laboratory for Applications

UCSD CSE 91 - Perspectives in Computer Science (Fall 2007)

Calit2@ UCSD

November 8, 2007

Dr. Larry Smarr

Director, California Institute for Telecommunications and Information Technology

Harry E. Gruber Professor,

Dept. of Computer Science and Engineering

Jacobs School of Engineering, UCSD

California’s Institutes for Science and Innovation A Bold Experiment in Collaborative Research

UCSBUCLA

California NanoSystems Institute

UCSF UCB

California Institute for Bioengineering, Biotechnology,

and Quantitative Biomedical Research

UCI

UCSD

California Institute for Telecommunications and Information Technology

Center for Information Technology Research

in the Interest of Society

UCSC

UCDUCM

www.ucop.edu/california-institutes

Scenarios in This New World

• Customized medical care based on genotype plus real-time vital signs

• Intelligent transportation systems to enable efficient traffic flow

• Real-time environmental data collection to inform decision making and policy setting

• Vast networked gaming environments in which to learn, communicate, work

• Digital entertainment networks, CineGrid

These scenarios are all based on… - integrated systems of underlying technologies - applied to real-world problems - affecting California’s economy and quality of life

Source: Warren Miller, New Yorker, April 11, 1988

What Is Calit2?

• Research on the Future of the Internet and its Transformation of Our Society

• Core Partnership Between UCSD and UCI– Several Hundred Faculty– Alliances With Other Campuses

• Prototyping Of Infrastructure Through “Living Laboratories”– From Campus to Planetary Scale– Partnerships With Multiple Levels of Government and Industry– Secret Sauce: Technical Professionals to Move Projects Forward

• Multidisciplinary Research Teams– Faculty, Postdocs, Staff, Students– Industry Partners –

– From Giants to Start-up Companies– Community Partners

– Emergency Responders

Jerry Sheehan, Calit2 is Followup Personjerry@ucsd.edu

Advanced Multimedia Facilities

High Definition Studio

• Audio Spatialization• Motion Capture• Gaming Lab

Synthesis Center

Laboratories

Millimeter Wave

Microwave/PA

Circuit Assembly

Smart Room

Laboratories Millimeter Wave

Microwave/PA

Circuits

Photonics

Funded Projects OptIPuter / NSF

WIISARD / NIH

RESCUE / NSF

CAMERA /

Moore Foundation

The Center for Networked Systems Technologies and Frameworks for Robust, Secure, and Open Networked Systems

Diverse Research Projects-Multiple faculty-Multiple students-Multidisciplinary-CNS Research Theme

ResearchInterests

ProjectProposals

Center Faculty

Member Companies

Calit2 CalRADIO Smart Radio Hardware/Software Teaching & Research Platform

• CalRADIO-I– Digital Signaling Processor + ARM– Operating System – RF WiFi (802.11x) Chip Set– MAC Functionality into 'C' Code – A Test Instrument, An Access Point,

And A WiFi Client

• CalRADIO-II– Gather Requirements and

Specifications– Layer 1 to Layer 7 Software Access– Several RF Front-End Modules

– 802.11x– 802.16– Cell– General RF

General Development Platform For Physical to Application Layers

of Wireless Design

Physical layer

Link layer

Network layer

Transport

Session layer

Presentation

Application

http://research.calit2.net/calradio/

Calit2 Brings Computer Scientists and Engineers Together with Biomedical Researchers

• Some Areas of Concentration:– Algorithmic and System Biology– Metagenomics– Cancer Genomics– Human Genomic Variation and Disease– Proteomics– Mitochondrial Evolution– Computational Biology– Multi-Scale Cellular Imaging– Information Theory and Biological Systems– Telemedicine UC San Diego

UC Irvine

UC Irvine

In Spite of the Bubble Bursting, Calit2 Has Partnered with over 130 Companies

Industrial Partners > $1 Million

Over $80 Million From Industry

So Far

1000

10000

100000

1000000

10000000

100000000

0 20 40 60 80

Rank D

olla

rs R

ecei

ved

Per

Co

mp

any

Broad Range of Companies

More Than 80 Have Provided Funds or In-kind

Ericsson: A Calit2 Industrial Partner with Breadth and Depth

• Sponsored Research: Non-Exclusive Royalty Free– $ 6.2 Million with UC Discovery Match– 17 Professors, 17 Students, 4 Post-docs

• 27 Student Fellowships• Two Endowed Chairs; Two Faculty Fellowships• Collaborations

– Magnus Almgren: Taught Course in ECE– Jaap Harsten, Bluetooth Hands-On Course

• Infrastructure– Base Stations, Always Best Connected

• Help with– New Federal Grants: $22.5 Million– Inspired Two Startups

Microlink

Ericsson

UCSD

Broadband Depends on Where You Are

• Mobile Broadband– 0.1-0.5 Mbps

• Home Broadband– 1-5 Mbps

• University Dorm Room Broadband– 10-100 Mbps

• Calit2 Global Broadband– 1,000-10,000 Mbps

100,000 Fold Range All Here Today!

“The future is already here, it’s just not evenly distributed”

William Gibson, Author of Neuromancer

September 26-30, 2005Calit2 @ University of California, San Diego

California Institute for Telecommunications and Information Technology

Borderless CollaborationBetween Global University Research Centers at 10Gbps

iGrid

2005T H E G L O B A L L A M B D A I N T E G R A T E D F A C I L I T Y

Maxine Brown, Tom DeFanti, Co-Chairs

www.igrid2005.org

100Gb of Bandwidth into the Calit2@UCSD BuildingMore than 150Gb GLIF Transoceanic Bandwidth!450 Attendees, 130 Participating Organizations

20 Countries Driving 49 Demonstrations1- or 10- Gbps Per Demo

First Trans-Pacific Super High Definition Telepresence Meeting Using Digital Cinema 4k Streams

Keio University President Anzai

UCSD Chancellor Fox

Lays Technical Basis for

Global Digital

Cinema

Sony NTT SGI

Streaming 4k with JPEG 2000 Compression ½ gigabit/sec

100 Times the Resolution

of YouTube!

CineGrid @ iGrid2005: Six Hours of 4K Projected in Calit2 Auditorium

4K Scientific Visualization

4K Digital Cinema

4K Distance Learning

4K Anime

4K Virtual Reality

Source: Laurin Herr

Remote Interactive High Definition Videoof Deep Sea Hydrothermal Vents

Source John Delaney & Deborah Kelley, UWash

Canadian-U.S. Collaboration

e-Science Collaboratory Without Walls Enabled by Uncompressed HD Telepresence

Photo: Harry Ammons, SDSC

John Delaney, PI LOOKING, Neptune

May 23, 2007

1500 Mbits/sec Calit2 to UW Research Channel Over NLR

Federal Agency Source of Funds

Federal Agencies Have Funded $350 Million to Over 300 Calit2 Affiliated Grants

Creating a Rich Ecologyof Basic Research

50 Grants Over $1 Million

Broad Distribution of Medium and Small Grants

OptIPuter

The OptIPuter Project: Creating High Resolution Portals Over Dedicated Optical Channels to Global Science Data

Picture Source:

Mark Ellisman,

David Lee, Jason Leigh

Calit2 (UCSD, UCI) and UIC Lead Campuses—Larry Smarr PIUniv. Partners: SDSC, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST

Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent

$13.5M Over Five

Years

Scalable Adaptive Graphics

Environment (SAGE)

3D OptIPortals: Calit2 StarCAVE and VarrierAlpha Tests of Telepresence “Holodecks”

Cluster with 30 Nvidia 5600 cards-60 GB Texture Memory, Renders Images 3,200 Times the Speed of Single PC

Source: Tom DeFanti, Greg Dawe, Calit2

Connected at 20 Gb/s to CENIC, NLR, GLIF

30 HD Projectors!

15 Meyer Sound Speakers + Subwoofer

Passive Polarization--Optimized the

Polarization Separation and Minimized Attenuation

Marine Genome Sequencing Project – Measuring the Genetic Diversity of Ocean Microbes

Sorcerer II Data Will Double Number of Proteins in GenBank!

Specify Ocean Data

Each Sample ~2000

Microbial Species

Plus 155 Marine

Microbial Genomes

Flat FileServerFarm

W E

B P

OR

TA

L

TraditionalUser

Response

Request

DedicatedCompute Farm

(1000s of CPUs)

TeraGrid: Cyberinfrastructure Backplane(scheduled activities, e.g. all by all comparison)

(10,000s of CPUs)

Web(other service)

Local Cluster

LocalEnvironment

DirectAccess LambdaCnxns

Data-BaseFarm

10 GigE Fabric

Calit2’s Direct Access Core Architecture Creates a SuperNetwork Metagenomics Server

Source: Phil Papadopoulos, SDSC, Calit2+

We

b S

erv

ice

s

Sargasso Sea Data

Sorcerer II Expedition (GOS)

JGI Community Sequencing Project

Moore Marine Microbial Project

NASA and NOAA Satellite Data

Community Microbial Metagenomics Data

“Instant” Global Microbial Metagenomics CyberCommunity

Over 1300 Registered Users From 48 Countries

USA 761United Kingdom 64Germany 54Canada 46France 44Brazil 33

NW!

CICESE

UW

JCVI

MIT

SIO UCSD

SDSU

UIC EVL

UCI

OptIPortals

OptIPortal

An Emerging High Performance Collaboratoryfor Microbial Metagenomics

UC Davis

UMich

Transitioning to the “Always-On” Mobile Internet

http://www.etforecasts.com/products/ES_intusersv2.htm

Cellular +

WiFi

NSF-Funded ResponSphere Establishes Calit2Project Rescue Testbeds in Irvine and in San Diego

• Gaslamp Quarter, San Diego/UCSD– Ubiquitous Wireless Coverage

in Downtown San Diego– Test Network Architecture

Enhancement and New Applications

• Crisis Assessment, Mitigation, And Analysis – UCI Campus– Field-Test and Refine

Research on Information Collection, Analysis, Sharing, and Dissemination in Controlled yet Realistic Settings

www.responsphere.org

Alex HubenkoProject Manager,

RESCUE, ResponSphere

NSF RESCUE Strongly Coupled with NIH WIISARD Grant

Wireless Internet Information System for Medical Response in Disasters

First Tier

Mid Tier

Wireless Networks

Triage

Command Center

Reality Flythrough Mobile Video

802.11 pulse ox

Calit2 is Working Closely with the First Responder Community

Les Lenert,

UCSD PI

Calit2’s WIISARD Project Has Innovatived Wireless Systems to Support SoCal First Responders

Aug. 22, 2006 MMST

Disaster Drill at

Calit2@UCSD Involved

Over 200 First Responders

Accelerator: The Perfect Storm-- Convergence of Engineering with Bio, Physics, & IT

2 mm

HP MemorySpot

Nanobioinfotechnology

1000x Magnification

2 micron

DNA-Conjugated Microbeads

Human Adenovirus

400x Magnification

IBM Quantum CorralIron Atoms on Copper

5 nanometers

400,000 x !

Nano3 FacilityCALIT2.UCSD

Calit2 Materials and Devices Laboratory:“Nano3” – Science, Engineering, Medicine

10,000 sq. feet

Materials and

Devices Labs

Class 100/1000

Nearly 50

Academic Projects

Source: Bernd Fruhberger, Calit2

Guided waveoptics

Aqueousbio/chemsensors

Fluidic circuit

Free spaceoptics

Physicalsensors

Gas/chemicalsensors

Electronics (communication, powering)

Ivan Schuller holding the first prototype in 2004

I. K. Schuller, A. Kummel, M. Sailor, W. Trogler, Y-H Lo

A World of Distributed Sensors Starts with Integrated Nanosensors

Developing Multiple Nanosensors on a Single Chip,

Integrated with Local Processing and Wireless Communications

Technology Transfer:RedX (Explosive Sensors), RheVision (Fauvation Optics)

2006

MURI for Nanostructured Supersensors

President Kalam of India Believes Nanobioinfotech is the Future for 600,000 Villages

• Interactive Knowledge System• Convergence of Info- Nano - Bio• Make the Bandwidth Available with No Limits• PURA--Societal Grid With Electronic Connection of a Billion People

Photo: Alan Decker, UCSD