Upload
john-wilbanks
View
910
Download
2
Embed Size (px)
DESCRIPTION
Opening talk at the reproducible research workshop at AMP 2011, Vancouver.
Citation preview
freedom (to reproduce)
john wilbanks
@creativecommons
@wilbanks
14 July 2011
freedom.
1. reproducibility > sharing.
2. best practices.
3. freedom (as in “to reproduce”).
non-reproducible = people die.
CIT
ATI
ON
S
Chemical probe available
0
500
1000
1500
2000
2500
3000
ERa
AR
PP
AR
aP
PA
Rg
PR
GR
RA
Ra
VD
R
MR
PX
R
LXR
aLX
Rb
PP
AR
dFX
R
TRb
CA
R
RO
Rg
NG
FIB
a
ERb
NG
FIB
b
HN
F4a
RO
Ra
SHP
ERR
a
SF1
DA
X
Re
v-er
ba
RA
Rb
CO
UP
2
RA
Rg
TRa
ERR
g
LRH
1C
OU
P1
NG
FIB
gR
ev-
erb
b
RX
Ra
RX
Rb
RX
Rg
PN
R
ERR
bR
OR
b
GC
NF
TLX
TR2
TR4
CO
UP
3H
NF4
g
NUCLEAR HORMONE RECEPTOR
the easier it is to reproduce chemically…
No chemical probes available
(slide courtesy of Aled Edwards, SGC)
reproducibility as collaboration.
http://www.flickr.com/photos/creativecommons/3304579594
note: not a scientist.
1. reproducibility > sharing.
2. best practices.
3. freedom (as in “to reproduce”).
old school
new school
1. reproducibility > sharing.
2. best practices.
3. freedom (as in “to reproduce”).
reality.
“open” and “closed” aren’t even on the menu here.
re-identification
consenting to uncertainty.
Browser Window
Freedoms you are granting
Right to do research with your data
Right to redistribute your data
Right to publish results of research
from your data
Right to commercialize products
derived from research on your data
✓
✓
✓
✓
Browser Window
Obligations you are imposing
I don’t want to be re-identified
Only health research allowed.
✓
✓
Browser Window
Check to confirm that:
I understand the risks
I consent that my data can be used for
research.
Although I can withdraw at any time,
versions of my data that are already
distributed may not be retrievable.
✓
✓
✓
Warning You must click yes on each element to proceed.
freedom.
freedom isn’t always about politics.