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The Report of Training Course
Training course of microbial resources
information management and utilization
for developing countries
At Institute of Microbiology, China Academy of Science
(MCAS), Beijing, China.
September, 2nd-15th 2014
By
Dr. Bundit Fungsin
Thailand Institute of Science and Technological Research
(TISTR)
2
Training course of microbial resources information
management and utilization for developing countries
in China.
Personal introduction
I have a good opportunity to participate in the training course of
“Training course of microbial resources information management and utilization
for developing countries” at MCAS, Beijing, during September 2-16, 2014. I am
Dr. Bundit Fungsin, senior research officer of Bioscience Department, Thailand
Institute of Scientific and Technological, Thailand (TISTR). Bioscience
Department, consisted of 2 sections, one is biotechnology laboratory and the
another is culture collection which named as TISTR culture collection, or
Bangkok. TISTR culture collection was established in 1976 as the name of
Bangkok MIRCEN the first culture collection in Southeast Asian countries,
which initiative budget funded by UNESCO, however, that supported fund was
terminated and instead by Royal Thai government and our own income. It is
very fruitful for me to participate in this course that I can gain more field of
knowledge in information management of cultures that can be applied in our
work at TISTR culture collection. Thanks to MCAS for give me of a good
chance to join in this course.
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Name of my culture collection
TISTR Culture Collection Bangkok MIRCEN
ABSTRACT
WFCC-MIRCEN World Data Center for Microorganisms (WDCM) has
arranged the training course on “Training Course of Microbial Resources
Information Management and Utilization for Developing Countries” during
September 2-15, 2014 in Beijing for aiming to promote of sharing and
utilization of microbial information connecting around the world among the
developed and developing countries. The training course program that contain of
informative lectures in many fields of basic and advance in microbiology which
also. The main training program are focusing in data management of
microorganisms in lecture and practice sessions. Those of all training program
are superbly useful to our work for handling of culture collection management.
The participants of the training course from culture collection organization
around the world consisted of 23 persons from 16 countries namely, Argentina,
Brazil, Ecuador, India, Iran, Kazakhstan, DRP Korea, Malaysia, Morocco,
Philippines, Sri Lanka, Hungary, Senegal, South Africa, Thailand, and China. I
come from TISTR culture collection or Bangkok MIRCEN, which is a section in
Bioscience Department, Thailand Institute of Scientific and Technological
Research (TISTR). I have a good chance to join with the training course that I
can gain more knowledge in many field of microbiology, particularly in
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microbial resource information management and utilization for applying at my
culture collection in Thailand.
Key words:
Training course, Information Microbial Resource Information Management,
Culture collection management, TISTR culture collection
Training Course of Microbial Resources Information
Management and Utilization for Developing Countries.
Training course in details:
Training course title :Training Course of Microbial Resources Information
Management and Utilization for Developing Countries.
Hosted by
WFCC-MIRCEN World Data Center for Microorganisms (WDCM)
CODATA Task Group on Advancing Informatics for Microbiology (TG-AIM)
Organized by
World Federation for Culture Collections (WFCC)
United Nations Educational, Scientific and Cultural Organization(UNESCO)
The purpose of the training course.
The purpose of the training course to help the staff of the participant countries’
culture collections thoroughly acquire knowledge on microbial culture collection
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and taxonomic experiment skills, learn about the development trend and
technical advancement in the field of microbiological informatics, learn to
manipulate microbial resource databases and their management platforms, and
master other informational technique as well.
Place: Institute of Microbiology, China Academy of Science (MCAS), Beijing.
Period: September 2nd
-16th 2014.
Participants of the training course 23 persons from 16 countries.
Training Course of Microbial Resources Information Management and utilization for developing Countries
No Name Organization Country Field of activity E-mail Facebook
1 Ahmed Idris
Hassen
Agricultural Research
Council (ARS-PPRI) South Africa
Applied
Microbiologist
za Ahmed Idris
2
Rajesh-Kumar
Kunhiraman
Chandandukkam
Agharkar Researh
Institue
National fungal Culture
Collection India (NFCCI)
India Mycologist
om
rajeshkumar@aripu
ne.org
+917507560050
+919823400949
Rajesh Kumar
(Rajforu)
3 Musliyana Mansor University of Putra
Malayisa (UPM) Malaysia Microbiologist
u.my
m
6017-7331538
Musliyana
Mansor
4 Javier Carvajal Pontificia Universidad
Catoloca del Equador Ecuador Biotechnologist
u.ec
5 Dhiraj Dhotre National Centre for Cell
science India Bioinformatics [email protected]
6 Krommavut
Nongnuch
National Center for
Genetic Engineering
and Biotechnology
(BIOTEC)
Thailand Database
management
Krommavut.non@bi
otec.or.th
Kromma
vutnong
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7 Micaela Tosi
Banco Nacional de
microorganismos
(BNM) Instituto de
Investigaaciones en
Biociencias Agricolas y
Ambientales (INBA)
CONICET-UBA
Argentina [email protected]
8 Jayant Khire National Chemical
Laboratory India Microbiologist [email protected]
9 Farzaneh
Azizmohseni
Persian Type Culture
Collection Iran Microbiologist
fazizmohseni@yaho
o.com
10 Kairty
Almagambetov
RSE Republican
collection of
Microoranisms of
Science Committee of
Ministry of Education
and Science
Repubilc of
Kazakhstan
Director of
Collection [email protected]
11 Sarojini Fernando Rubber research
Institute of Sri Lanka Seri Lanke
Plant
pathologist
thpsfernando@yaho
o.com
12 Tarik Aanniz
Centre National pour la
Recherche
Scientitifique et
Technique (CNRST)
Morocco
Microbiologist/
molecular
biology
[email protected] Tarik aanniz
13 Bundit Fungsin
Thailand Institute of
Scientific and
Technological Research
(TISTR)
Thailand Yeast Curator [email protected]
14 Brigita Konya
Budapest University of
technology and
Economics (BUTE)
Hungary
Chemical
Eng./Environme
nt Eng.
konyabrigitta@gmail
.com
15 Ursela Bigol
Environment and
Biotechnology Division,
Industrial Technology
Development Institute
Philippines Biochemistry [email protected]
m
16 O Myong Gon Korean Culture
Collection DRP Korea
Curator of
Collection
et.kp
17 Kyong Min State Academy of
Sciences DRP Korea ?
et.kp
18 Elizabeth
Harmmyy Takagi Instituto Adolfo Lutz Brazil microbiologist
ov.br Harummyy
19 Biswajit Maiti Nitte University Mangalore,
India
Marine
biotechnologist
n biswajitmaiti
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20 Dioumacor Fall
Senegalease Institue
for Agricultural
Research (ISRA)
Senegal Soil
Microbiology
dioumacorfall@y
ahoo.fr
dioumacor.fall@is
ra.sn
21 Mamdadou Gueye University of Sine
Saloum Kaolack (USSK) Senegal
om
22 Chengyun Li Shandong Academy of
Science China Microbiologist [email protected]
Source : Data from the compliment of Dr. Farzaneh Azizmohseni, Iran
Schedule of the training program
Date Time Contents Lecturer
3 Sept.
2014
9.00-9.20 Opening ceremony
9.20-10.00 Building TRUST Literature and practically &
Necessary Legal Policy for culture collections
DrPhilippe Desmeth
10.00-10.40 WDCM introduction Dr. Juncai Ma
11.00-11.40 Evolving Perspectives on Marine Genetic
Resources
Dr. Lyle Glowka
13.30-14.30 Management of biological resource in Korea Dr. TaeEun Jin
15.00-16.00 The Nagoya Protocol : Compliance Dr. Geoff Burton
4 Sept.
2014
9.00-9.40 Characterization of bacterial strains for
Taxonomic purpose
Dr. Man Cai
10.00-10.40 Cha How to da classical taxonomic study of
fungi
Dr. Youzhi Wang
11.00-11.30 Visit CGMCC (China General Microbiological
Culture Collection Center)
Dr.Youzhi Wang
13.30-16.30 Meeting of Revitalization of MIRCEN
5 Sept.
9.00-10.00 Annotation and Integrated retrieval of Microbial
Genome sequences
Prof. Hideaki Sugawara
10.30-11.30 Data practice Prof. Hideaki Sugawara
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2014 13.30-14.30 Microbial genome Analysis: SLIVA/ MLST Dr. Chen Chen
15.00-16.30 Data practice Dr. Chen Chen
9 Sept.
2014
9.00-10.00 WFCC Global Catalogue of Microorganisms (I) Dr. Wu Linhuan
10.00-16.30 Presentations and Group Discussion Prof. Juncai Ma
10 Sept.
2014
9.00-10.00 Biodiversity: Management and Risk Assessment Prof. Mamados Gueye
10.00-10.40 WDCM databases: WFCC homepage, CCINFO
and reference strain
MS. Zhang Jianyuan
10.30-11.30 Data practice Ms. Sun QingLan
13.30-14.30 Data standards of microbial resources Dr. Wu Linhuan
14.00-16.30 Data practice Dr. Wu Linhuan
11 Sept.
2014
9.00-9.30 WFCC Global Catalogue of Microorganisms (II) Dr. Wu Linhuan
10.00-10.30 Data practice Dr. Wu Linhuan
13.30-14.00 WDCM Analysis of Bio-resources citations Dr. Wu Linhuan
14.00-16.30 Data practice Ms. Sun QingLan
12 Sept.
2014
9.00-10.30 BOLD mirror Dr. Liu Di
10.00-11.30 Discussion and Database Practice Dr.Lui Di
13.30-14.30 Microbial genome annotation pipeline Dr.Liu Li
15.00-16.30 Data practice Dr. Lui Li
15 Sept.
2014
9.00-10.00 Bioinformatics Resource in CBI- databases, data
analysis and visualization platforms
Dr. Kong Lei
10.30-11.30 Data Practice Dr.Kong Lei
13.30-14.30 Closing ceremony
TISTR Culture Collection
TISTR Culture collection was established in 1976, as the first culture
collection in the Southeast Asian countries which was previously named as
Bangkok MIRCEN. TISTR culture collection is one of 2 sections in
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Bioscience Department which consisted of Applied microbiology laboratory and
TISTR culture collection . In the initiative period the culture collection was
supported for funding by UNESCO, however in the presence, the supporting by
UNESCO was terminated, therefore the presence supporting funds are from the
Royal Thai government and our own income. TISTR culture collection has hold
of microbial strain number nearly 4,000 strains which including of bacteria
(1190 strains), Yeast (566 strains), filamentous fungi (455 strains) and
microalgae (1000 strains). The roles of TISTR culture collection are firstly as
the national level are the main culture collection in Thailand, secondly to
catalysis at national and regional collaborations and thirdly as the core center
and focal point for Thailand network on culture collection (TNCC) or Thailand
Biological Resource Center (TBRC) as the presence. The main tasks of TISTR
culture collection as preservation and distribution of cultures, providing for
training course in short term technical and on the job training program and
microorganisms.
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Picture of TISTR Culture Collection
Pictures of training course activity
China Academy of Science, Beijing, Place for Training Course
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Meeting group of revitalization of MIRCEN
Meeting group of revitalization of MIRCEN
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Training group visit CGMCC
Training group visit CGMCC
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Training group visit CGMCC
Presentation of TISTR Culture Collection
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Participants attend the Training Lecturer
My photograph in front MCAS building
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Suggestion on WDCM work.
The World Data Center for Microorganisms, WDCM have superbly
carried on the management of microorganism information systemically. WDCM
also is providing of proper programs for handling to collect of all microbial data.
Those program are workable, function very well and easily to use for accessing
to all microbial strains. I am so admire to WDCM for those kind of works that
have done and progress very well. I have not yet found any difficulty to use the
tools or programs to proceed to collect of all microbial data. I am so appreciated
to the works that was delicate by WDCM.
Comments or suggestion on the training courses.
I think I have a good opportunity to join the training program “Training
Course of Microbial Resources Information Management and Utilization for
Developing Countries in MCAS. The training course was excellently provide for
everything such as the training program, keynote speakers, lecturers, the
residence of very nice hotel and all expense during staying for the training
course. I have gained a lot of new knowledge on the other fields that I have not
so proficient namely, the data management of culture, the world wide
information management and networking. Those of new knowledge and
experience I do believe that those can be applied to improve or develop in our
culture collection working process absolutely. In addition, I also have a good
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chance to get to know the other friends who conduct in culture collection around
the world.
Suggestion on further cooperation between WDCM and your collections.
The further cooperation between WDCM with TISTR culture collection, in
my opinion I do believe in the further cooperation and intend to have the further
cooperation with WDCM in many ways as follows.
1. The cooperation in microbial information management.
2. The cooperation in culture collection management.
3. The cooperation in doing some research projects in Biotechnology.
4. The cooperation in some short-term technical training or on the job training
program.
Acknowledgements
I would like to express my sincerely thanks to WFCC-MIRCEN World
Data Center for Microorganisms (WDCM), CODATA Task Group on Advancing
Informatics for Microbiology (TG-AIM), World Federation for Culture
Collections (WFCC), United Nations Educational, Scientific and Cultural
Organization (UNESCO) for kindly organized and hosted of the training course
of “Training Course of Microbial resources Information Management and
Utilization for Developing Countries”. Also I would like to thank to Institute
of Microbiology, China Academy of Science (MCAS) for hosting of the training
course. Last but not least I would like express my sincerely thanks to Director
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of WDCM, Prof. Dr. Jun Cai Ma to give me a good chance to participate the
training course that is very fruitful for me to join the training course, also thanks
to Dr. Wu Linhuan and Dr. Zhang Jianyuan for their kind help and providing in
several concerned issues for me to overcome the training course.
