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Secondary Metabolites: Biochemistry and Role in Plants Introduction

Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

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Page 1: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Secondary Metabolites: Biochemistry and Role in Plants

Introduction

Page 2: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Secondary Metabolites are Derived from Primary Metabolites

Page 3: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

PrimaryPrimary--Secondary metabolites boundary ??Secondary metabolites boundary ??

GA biosynthesis Resin

component

Essential amino acid Alkaloid

Page 4: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Main Groups of Secondary Metabolites Main Groups of Secondary Metabolites in Plantsin Plants

29,000 terpenes29,000 terpenes-- derived from the C5 derived from the C5 precursor isopentenyl diphosphate (IPP) precursor isopentenyl diphosphate (IPP)

12,000 alkaloids12,000 alkaloids-- derived from amino acidsderived from amino acids

8,000 phenolics8,000 phenolics-- shikimate pathway or shikimate pathway or malonate/acetate pathwaymalonate/acetate pathway

Page 5: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Main Secondary metabolitesMain Secondary metabolites

Nitrogen containing:- Alkaloids (12,000)- Non protein amino acids (600)- Amines (100)- Cyanogenic glycosides (100)- Glucosinolates (100)

Page 6: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Main Secondary metabolitesMain Secondary metabolitesWithout nitrogen:

- Terpenoids (29,000):mono- 1000sesquiterpene- 3000diterpenes-1000triterpenes, steroids, saponines- 4,000

- Phenolics (8,000):Flavonoids- 2000Polyacetylens-1000Polyketides- 750Phenylpropanoids- 500

Page 7: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Compartmentation of SMs biosynthesisCompartmentation of SMs biosynthesis

Mostly in the Cytosol: hydrophilic compounds

Chloroplasts: alkaloids (caffeine) and terpenoids (monoterpenes)

Mitochondria: some amines, alkaloids

Vesicles: alkaloids (protoberberines)

Endoplamic reticulum: hydroxylaton steps, lipophilic compounds

Page 8: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs sequestrationSMs sequestration

- Water soluble compounds are usually stored in the vacuole

- Lipophilic substances are sequestered in resin ducts, laticifers, glandular hairs, trichomes, in the cuticle, on the cuticle

Page 9: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs sequestration in to VacuolesSMs sequestration in to Vacuoles

Water soluble compounds-alkaloids, NPAAs,cyanogenic glucosides, glucosinolates, saponines, anthocyanines, flavonoids,cardenolides

ATP-dependant transporter

Page 10: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs sequestration in to VacuolesSMs sequestration in to Vacuoles--Anthocyanin exampleAnthocyanin example

- Anthocyanines- blue-red flavonoid pigments

- They are stabilized in the vacuole

- Oxidized in the cytosol

- The sequestration is a detoxification process

Page 11: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs sequestration in to VacuolesSMs sequestration in to Vacuoles--Anthocyanin exampleAnthocyanin example-- Bz2 mutantBz2 mutant

- When the BRONZE2 gene is not active, anthocyanines accumulate in the cytosol and a tan bronze phenotype of tissue is obtained

- BRONZE2 is a Glutathione-S-transferase

- Glutathionation of anthocyanines is a pre-requisite for the targeting to the vacuole through a GST-x-pump in the tonoplast membrane

Page 12: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs sequestration in VacuolesSMs sequestration in Vacuoles-- Anthocyanin Anthocyanin exampleexample-- bz2bz2 & the an9 mutant& the an9 mutant

bz2 an9

Page 13: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs sequestration to a location with a solid SMs sequestration to a location with a solid barrier and not with a biomembrane barrier and not with a biomembrane (interfered by lipophilic SMs) (interfered by lipophilic SMs)

Thyme-glandular trichomes

Mint-glandular trichomes

Lemon leaf-secretory cavity

Pine- resin duct

Page 14: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Storage in LATICIFERS

- Latex is a sap mixture of compounds stored in special structures called LATICIFERS

- Rubber was isolated from it in the past

- The composition is typically water, terpenes, sugars, enzymes, etc.

- Often latex has a milky appearance

Page 15: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Long Distance Transport of SMsIn Xylem, Phloem or Apoplastic transport

Long-distance phloem transport of glucosinolates Chen et al., 2001

Page 16: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Long-distance phloem transport of glucosinolates

Chen et al., 2001

- Intact Glucosinolates are transported

- Selection of a specific glucosinolate to be loaded into the phloem

- Presence of glucosinolates in the phloem provide means of defense against insects

- Export of glucosinolates from fully expanded leaves and senescent parts

- Export to sink tissues, seeds, flowers

Page 17: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Costs of Secondary metabolism (ATP / NADPH2 consumption)

- Biosynthesis of precursors and secondary metabolites

- Transport and storage

- Formation of specialized storage compartments (e.g. trichomes)

- Synthesis of mRNA and proteins (transcription translation)

Often needed in HIGHconcentrations(1-3% of dry weight are regularly seen)

Page 18: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Function of Secondary MetabolitesOften arguments that SMs are waste products but this cannot explain:

- production of SMs in young tissues

- plants are autotrophs and waste products are typical and needed for heterotrophic animals that cannot degrade their food completely for energy production

- many SMs could be metabolized further (SMs that contain nitrogen stored in seeds and metabolized during germination)

- tight spatial and temporal regulation of SMs biosynthesis

- proven biological activity

Page 19: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Function of Secondary Metabolites -DEFENSE - ATTRACTION - PROTECTION (uv)

- Most animals can move-run away and posses an immune system

- Plants are attacked by herbivores, microbes, (bacteria and fungi) and by other plants competing for light, space and nutrients

- Abiotic stresses such as radiation

Page 20: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Function of Secondary Metabolites:

Defense

Herbivores (insects, vertebrates)Repellence, deterrence,

toxicity

Microbes (bacteria, fungi, viruses)

Growth inhibition and toxicity

Attraction

Plant SMs- mixtures- variation in time,space & dev. stage

- pollinating insects- seed dispersing animals- root nodule bacteria- induced volatiles attract predatory organisms (tritrophic interactions)

competing plants (inhibition of germination and seedlings growth)

UV-protection

M. Wink, Annual Plant Review, 1999

Page 21: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Examples of plant SMs and their proposed functionInsect feeding

deterrentVisual pollinator attractant

Defense toxinOlfactory pollinator attractant

Antifungal toxinDefense toxin

From Pichersky and Gang, 2000

Page 22: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Production of SMs for defense against herbivores and pathogens is not necessarily constitutive

- Wounding and infection trigger INDUCED accumulation of SMs

herbivoreinhibition

Secondary metabolism

activation of prefabricated defense chemicalsPLANT

wounding and infection increase of existing defense compounds

induction of de novo synthesis of defense compounds (phytoalexins)

microbe inhibition

M. Wink, Annual Plant Review, 1999

Page 23: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Function of Secondary Metabolites

- Wounding can lead to release of a pre-fabricated compound from a compartment

- The mix with an enzyme (often an hydrolaze) will result in production of an active form of the chemical

- Example: myrosinase-glucosinolates

Page 24: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The "mustard oil bomb"-- A binary Glucosinolate-Myrosinase chemical defense system

Glucosinolates breakdown products1- isothiocyanates2- nitriles and elemental sulfur3- thiocyanates4- oxazolidine--thiones5- epithionitriles

Grubb and Abel, TIPS, 2006

Page 25: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Targets for SMs in animalsystems

- Nervous system (perception,processing, signal transduction

- Development- Muscles and motility- Digestion- Respiration- Reproduction and fecundity

Page 26: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Co-evolution in plant SMs - natural enemy

- The SM defense system works in general but not always

- Some herbivores and microorganisms have evolved that have overcome the defense barrier (like viruses, bacteria or parasites that bypass the human immune system)

- These organisms developed different strategies of adaptations to the SMs

- They can either tolerate them or even use them for their diet

Page 27: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Adaptations of specialist herbivores & pathogens

Herbivores:- Avoidance of toxic plants, except host plant

- Cutting laticfers and resin ducts filled with SMs

- Non-resorption or fast intestinal food passage

- Resorption followed by detoxification and elimination (urine and others)

- Hydroxylation- Conjugation- Elimination

Page 28: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Adaptations of specialist herbivores & pathogens

Herbivores (continued)-

- Resorption and accumulation:- Specific compartments / cells / tissues for sequestration- Evolution of insensitivity

- Use of plant SMs in diet:- defense against predators - signal molecules (pheromones)- morphogen

Page 29: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Adaptations of specialist herbivores & pathogens

Microorganisms:

- Inactivation of SMs

- Evolution of insensitivity

Page 30: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Co-evolution in plant SMs - natural enemy

Natural enemy Counter resistancePlant taxonPlant defense

Toxic amino acids Various Leguminosae

Bruchid weevil Modified tRNA synthase

Dioclea seed L-canavanine(similar to arginine, no protein amino acid)

Weevil

Page 31: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Co-evolution in plant SMs - natural enemy

- Canavanine is toxic due to its incorporation into proteins that rise to functionally aberrant polypeptides

- The tRNA- Arginine in insects uses also Canavanine

- The insect mutated its tRNA and will not incorporate canavanine instead of Arginine

Page 32: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Adaptations of specialist herbivores & pathogens

The process of co-evolution between plants and their natural enemies is believed to have generated much of the earth's biological diversity

This includes chemical diversity!!

Page 33: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs in Arabidopsis

Page 34: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SMs in Arabidopsis

Page 35: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpenes (mono and sesquiterpenes in Arabidopsis

Chen et al., 2003

Page 36: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Expression pattern of a Terpene Synthase in Arabidopsis

Page 37: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The Terpenoids or The Terpenoids or IsoprenoidsIsoprenoids

Page 38: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The name Terpenoid & Isoprenoid

- The name terpenoid derives from the fact that first members of the class were isolated from TURPENTINE [the distillate from tree (e.g.. pine) resins]

- Isoprenoid, since ISOPRENE is the basic unit of C5 building them (C5H8)

Page 39: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The biogenetic isoprene rule

Leopold Ruzika (1930s; Nobel Prize chemistry 1910): A compound is an "isoprenoid" if it is derived biologically from an "isoprenoid" with or without rearrangements

Page 40: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The Terpenoids of Plant origin The Terpenoids of Plant origin Biological Role (volatile and non volatile):

- Flavour, fragrance, scent- Antibiotics- Hormones- Membrane lipids- Insect attractants- Insect antifeedants- Mediate the electron transport processes (in respiration and photosynthesis)

Page 41: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpenoids and CommunicationTerpenoids and Communication

Below ground attraction: orientation

cues (non-volatile)

Below ground protection: anti-

microbial, antifeedant (non-volatile)

Above ground attraction: fragrance

(volatile)

Above ground protection: repellents,

antifeedants, predator attraction

(volatile/non-volatile)

Page 42: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Precursors of Terpenoids

Page 43: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Mixed Origins of Terpenoids Precursors (Meroterpenes)

Page 44: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpenoids Terpenoids -- Important Molecules !Important Molecules !C5 - hemiterpenes - e.g. isoprene

C10 - monoterpenes - e.g. limonene

C15 - sesquiterpene - e.g. abscisic acid (ABA)

C20 - diterpene - e.g. gibberellin

C30 - triterpne - e.g. brassinosteroids

C40 - tetraterpenes - e.g. carotenoids

> carbons - polyterpenes- e.g. ubiquinones, rubber

mixed biosynthetic origins - meroterpenes - e.g. cytokinines, vitamin E

Page 45: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Monoterpenes Monoterpenes (C(C1010))

Page 46: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Sesquiterpenes Sesquiterpenes (C(C1515))

Page 47: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Diterpenes (CDiterpenes (C2020))

Page 48: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

TriterpenoidsTriterpenoids(C(C3030))

Page 49: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

TetraTetra--terpene / Carotenoids (Cterpene / Carotenoids (C4040))

Page 50: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Biosynthesis in two main compartmentsBiosynthesis in two main compartments

Mevalonate pathwayMevalonate pathway leading to IPP in leading to IPP in the cytosol the cytosol

The The MEP pathwayMEP pathway leading to IPP in the leading to IPP in the plastidsplastids

Page 51: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Biosynthesis in two main compartmentsBiosynthesis in two main compartments

Mevalonate pathwayMevalonate pathway leading to IPP in leading to IPP in the cytosol the cytosol

The The MEP pathwayMEP pathway leading to IPP in the leading to IPP in the plastidsplastids

Page 52: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

CytosolMEP

Plastid

Mevalonate

Page 53: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Acetyl-CoA HMG-CoAHMGR

MVA

DMAPP

IPP

Cytokinins

FPP

SqualeneBRsTriterpenes

Polyprenols

DolicholPrenylation

DMAPP

IPP

FPP

Ubiquinones

Terpenes

Monoterpenes

PyruvateGlyAld-3P

MEP

DXP

DMAPP IPP

GPP

DXS

GGPP

DXR

HDR+

Carotenoids

PhylloquinoneTochpherols

GibberellinsPlastoquinone

ABA

PLASTID

CYTOSOL

MITOCHONDRION

ENDOPLASMIC RETICULUM

Sterols

Terpene alcoholsCYTP450

Diterpenes

Sesquiterpenes

Terpenes Reduced/oxidizedterpenes

Reductase/dehydrogenase

Page 54: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Biosynthesis of terpenoidsBiosynthesis of terpenoids

Three main reactions:

- Generating precursors by prenyltransferases (GPP, FPP,GGPP)

- Terpene synthase reactions (e.g. monoterpene synthase/cyclase)

- Modification steps

Page 55: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Biosynthesis of Precursors Biosynthesis of Precursors (prenyltransferases)(prenyltransferases)

Page 56: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Biosynthesis of Precursors Biosynthesis of Precursors (prenyltransferases)(prenyltransferases)

Cytosol Plastid

OPP OPP

DMAPPIPP

OPP OPP+IPP DMAPP

2 x +

FDP - synthase GDP - synthase

OPP

OPP

Farnesyl diphosphate Geranyl diphosphate

Page 57: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpene CyclasesTerpene Cyclases

One One enzymeenzyme……....OneOnesubstratesubstrate……....Multiple Multiple productsproducts

Page 58: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpene Terpene Cyclases Cyclases (Mono)(Mono)

Page 59: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpene Terpene Cyclases Cyclases (Sesqui(Sesqui--))

Page 60: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpene Terpene Cyclases Cyclases (Diterpene)(Diterpene)

Page 61: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

isopentenyl diphosphate(IDP)

dimethylallyl diphosphate(DMAPP)

GDP synthase

geranyl diphosphate(GDP)

monoterpene synthases +/-modifying enzymes

OH

O

O

O

H

OO

H

farnesyl diphosphate(FDP)

squalene-2,3-epoxide

MONOTERPENOIDS SESQUITERPENOIDS

DITERPENOIDS TRITERPENOIDS

O

NH

O

OH

O

OBzH

OAc

AcO OH

OOH

O

PPO

OPP

OPP

geranylgeranyl diphosphate(GGDP)

O

OO

O

O

H

H

H

O

HOOH

CO2H

HOOH

CO2HHO

OH

paclitaxelglycyrrhizin

(E,E)-α-farneseneartemisininlinalool α-pinene perilla alcohol

OAc

OOH

O

HO

HOH

H

OH

cucurbitacin C

CHOCHO

polygodial

FDP synthase

GGDP synthase

squalene synthase

squalene epoxidaseOPP OPP

diterpene synthases +/-modifying enzymes

sesquiterpene synthases +/-modifying enzymes

triterpene synthases +/-modifying enzymes

Strawberries Anti-malarial drug

Myzus persicae Leaf of cucumber

Page 62: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Modification of Monoterpene Modification of Monoterpene StructuresStructures

OPP

OPP OPP

OH O O

O

O

Isopentenyl diphosphate Dimethyl allyl diphosphate

(-) limoneneGeranyl diphosphate (-) trans- Isopiperitenol (-) Isopiperitenone(+)-cis-Isopulegone

(-)-Limonene cyclase

Limonene 3-hydroxylase dehydrogenase reductase

isomerase

GDP-synthase

isomerase

O

reductase reductase

OH OH

reductase+ (+)-pulegone

(-)- Menthol (+)-neomenthol (-)- menthone (+)-isomenthone

Page 63: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Monoterpenoid Biosynthesis in Mint

G.W. Turner and R. Croteau, PlantPhysiol 136 (2004)

Page 64: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Production in PlantsStorage:

* Glandular trichomes: Labiatae like Mentha, Cannabis

* Cavities : Eucalypt, Citrus

* Resin ducts : pine trees

Production and direct emission:

* Flowers

* Leaves

* Fruit

Page 65: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Most secondary metabolites in Basil are produced in the Peltate Glands

Peltate Glands

Page 66: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Peltate Glands Isolated From Sweet Basil

Page 67: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Terpenoids in Peltate Glands (Sweet Basil)

Monoterpenes Sesquiterpenes

Page 68: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Metabolic Metabolic Engineering of Engineering of

Terpenoid Terpenoid BiosynthesisBiosynthesis

OH

Page 69: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Why? Metabolic Engineering of Why? Metabolic Engineering of Terpenoids in PlantsTerpenoids in Plants

In addition, plants altered in the profile of In addition, plants altered in the profile of terpenoids (and pool of precursors) make terpenoids (and pool of precursors) make

fundamental fundamental an important contribution to an important contribution to on their biosynthesis and on their biosynthesis and studiesstudies

regulationregulation

Page 70: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

FaNES1, a Dual Linalool / FaNES1, a Dual Linalool / Nerolidol SynthaseNerolidol Synthase

Using FaNES1 allows evaluation of both monoUsing FaNES1 allows evaluation of both mono-- and and sesquiterpene productionsesquiterpene production

OPPOH

farnesyl diphosphate (3S )-(E)-nerolidol

OHOPP

geranyl diphosphate S -linalool

Mg2+ /Mn2+

Mg2+ /Mn2+

FaNES1

FaNES1

Page 71: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Introducing the FaNES1 Gene to Introducing the FaNES1 Gene to ArabidopsisArabidopsis

Enh 35S T

Plastid targeting

FaNES1 Expected resultmonoterpenes

produced in plastids:

linalool

linalool derivatives formed ?

Wild-type Arabidopsis leaves do not produce linalool

Page 72: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

SS--Linalool Formation in Leaves of Linalool Formation in Leaves of ArabidopsisArabidopsis

23 24 250

100

0

100

0

100

Time, min

Rel

ativ

e de

tect

or r

espo

nse

S-Linaloolreference

R-Linalool reference

Transgenic Arabidopsis

Page 73: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Further ModificationFurther ModificationFree and Glycosidically Bound Terpenoids Produced by Arabidopsis

0

0.2

0.4

0.6

0.8

1

1.2

1.4

1.6

Nt-1 Nt-2 Nt-3 Nt-4 Nt-5Tr-9

_1Tr-9

_2Tr-9

_3Tr-9

_4Tr-9

_5Tr-9

_6

E-8-hydroxy-linalool

E-8-hydroxy-6,7-dihydro-linalool

nerolidollinalool

A

Con

cent

rat io

n (m

g kg

-1-F

W)

Con

cent

rat io

n (m

g kg

-1-F

W)

0

20

40

60

80

100

120

Nt-1 Nt-2 Nt-3 Nt-4 Nt-5

Tr-9_1

Tr-9_2

Tr-9_3

Tr-9_4

Tr-9_5

Tr-9_6

E-8-hydroxy-linalool

Z-8-hydroxy-linaloolE-8-hydroxy-6,7-dihydro-linalool

nerolidol

linalool

Plant

Free Glycosidically Bound

Page 74: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Introduced product: Introduced product: linaloollinaloolModified by endogenous Modified by endogenous enzymes:enzymes:

P450 hydroxylation (2P450 hydroxylation (2--3)3)Double bond reductionDouble bond reductionGlycosylation (2Glycosylation (2--3)3)

OH

OH

OH

OH

OH

OH

OH

S-Linalool

E-8-Hydroxylinalool Z-8-Hydroxylinalool

E-8-Hydroxy-6,7-dihydrolinalool

GlycosideGlycoside

Glycoside

Further ModificationFurther Modification

Page 75: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Further ModificationFurther ModificationThe sum of glycosylated components was in some of the transgenic lines up to 40 to 60-fold higher than the sum of the corresponding free alcohols

Con

cent

ratio

n (m

g kg

-1-F

W)

0

20

40

60

80

100

120

140

160

Nt-1_n

o

Nt-2_n

o

Tr26-36

_no

Tr26-30

_no

Tr26-41

_no

Tr9-15

_no

Tr9-12

_no

Tr9-21

_sm

Tr9-6_

sm

Tr26-29

_sm

Tr9-7_

sm

Tr26-32

_sm

Tr26-28

_sm

Sum - glycosidically bound

Sum - free

Page 76: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Further ModificationFurther ModificationOH

OH

OH

OH

OH

OH

OH

S-Linalool

E-8-Hydroxylinalool Z-8-Hydroxylinalool

E-8-Hydroxy-6,7-dihydrolinalool

GlycosideGlycoside

Glycoside

1. Produced to the highest levels in transgenic lines

2. The only component detected in leaves of wild-type plants

3. Endogenous enzymes already active and can utilize efficiently the newly introduced linalool

E-8-Hydroxylinalool and its glycoside:

Page 77: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Potato Plants Transformed with the Same Construct

25.6 25.8 26.0 26.2 26.4 26.6 26.8 27.0 27.2 27.4 27.6 27.8 28.0

Time (min)

20

40

60

80

100

20

40

60

80

100

20

40

60

80

100

20

40

60

80

100

20

40

60

80

100

NL:

NL:

R - LinaloolS - LinaloolReference

Wild-type

Transgenic # 1

Transgenic # 2

Transgenic # 3

Rel

ativ

e ab

unda

nce

Page 78: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

OH

OH

OH

OH

OH

OH

OH

S-linalool

E-8-hydroxy-linalool Z-8-hydroxy-linalool

E-8-hydroxy-6,7-dihydrolinalool

glycosideglycoside

glycoside

glycoside

assumed glycosylationsite in potato

assumed glycosylationsite in Arabidopsis

assumed glycosylation site in potato

assumed glycosylationsite in Arabidopsis

assumed glycosylationsite in potato

further further modificationmodificationin transgenic in transgenic potato plantspotato plants

Page 79: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Conclusions • In most cases the introduced metabolite could be glycosylated and/or hydroxylated• Glycosylation could be highly efficient • Derivatisation will be different between plant species and it will depend on the genetic make-up (i.e. activity of the endogenous enzyme)• If the target metabolite or its derivative is already produced by the plant one should expect amplification in production but also formation of “new” metabolites (possibly metabolites that could not be detected earlier due to sensitivity of instruments)

Page 80: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Engineering Sesquiterpenes in ArabidopsisIntroducing the CiGASlo Gene to Introducing the CiGASlo Gene to

ArabidopsisArabidopsisEnh 35S TCiGASlo

Wild-type Arabidopsis leaves do not produce Germacrene A

Cytosolic production of a Germacrene A synthase from

Chicory

Page 81: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Engineering Sesquiterpenes in ArabidopsisTraces of the thermal rearrangement product of Traces of the thermal rearrangement product of

Germacrene A (de Kraker et al., 1998) were detected in Germacrene A (de Kraker et al., 1998) were detected in leavesleaves

Page 82: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Unexpected: Sesquiterpene Production with Unexpected: Sesquiterpene Production with Plastidic Targeting of FaNES1Plastidic Targeting of FaNES1

800

900

1000

1100

1200

1300

1400

0

10000

20000

ime

nero

lido

l

800

900

10 00 11 00 12 00 13 00 14 000

10000

20000

ime

Abu

ndan

ce

ransgenicrabidopsis

ild typerabidopsis

Abu

ndan

ce

lina

lool

Linalool

Nerolidol

Page 83: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Nerolidol is Produced at Low Level Also in PotatoNerolidol is Produced at Low Level Also in Potato

33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1

Time (min)

20

40

60

80

100

20

40

60

80

100

20

40

60

80

100

Rel

ativ

e A

bund

ance

20

40

60

80

100 34.67

34.10

34.16 34.39 34.5033.78 34.3434.00 34.7633.81 34.80 35.0434.92 35.0734.68

34.1134.50

34.3934.2134.0033.77 33.92 34.7834.30 34.82 35.00 35.0834.65

34.1034.50

33.80 34.18 34.2633.91 33.95 34.38 34.78 34.87 35.0734.9434.66

34.5134.4934.11

34.0333.77 34.2133.99 34.3734.31 34.75 35.1434.83 34.95 35.00

Nerolidol Wild-Type

Transgenic #1

Transgenic #2

Transgenic #3

Page 84: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Availability of Precursor Pools?Availability of Precursor Pools?

Monoterpenes

GPP GGPP

IPP DMAPP

Emission /storage

CYTOSOL

Sesquiterpenes

FPP

GPP

IPP DMAPP

PLASTID

Hydroxylated monoterpenes

MITOCHONDRIA

FPP

Page 85: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Engineering Sesquiterpenes in ArabidopsisIntroducing the FaNES1 fused to a Mitochondrial Introducing the FaNES1 fused to a Mitochondrial

targeting signaltargeting signal to Arabidopsisto Arabidopsis

Enh 35S TFaNES1

Production of terpenoids in Mitochondria

Cox IV

Mitochondrial targeting, cytochrome c oxidase

Page 86: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Engineering Sesquiterpenes in Arabidopsis

Undamaged Wild-type

Transgenic Undamaged (nerolidol and DMNT)

Transgenic undamaged (only nerolidol)

Nerolidol

DMNT (C11 homoterpene) Nerolidol

C15 sesquiterpene C11 homoterpene

Page 87: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Conclusions • Engineering sesquiterpene production in the cytosol compared to plastidic production of monoterpenes seems more difficult

• Targeting different cell compartments for engineering terpenoids might be a valuable tool

• Further modification of introduced terpenoid might be different in each cell compartment

Page 88: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The Cost of Terpenoid Production in Plants

Growth retardation with constitutive over-expression of FaNES1 in Arabidopsis

Page 89: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The Cost of Terpenoid Production in

Plants

Constitutive over-expression of FaNES1 in potato controlled by the Rubisco promoter

The Rubisco promoter is x 10 fold stronger than the 35S promoter

Rubisco T

Plastid targeting

FaNES1

Page 90: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

The Cost of Terpenoid Production in Plants

Bleaching and growth retardation with constitutive over-expression of FaNES1 in potato

Page 91: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Effect of Linalool Expression on Potato Effect of Linalool Expression on Potato PhenotypePhenotype

02468

101214

1 2 3 4 5 6 7 8 9

K-con K-R5.2 K-R1.1 K-R1.7 K-R1.2 K-R1.4 K-R7.1 K-R3.4K-R1.3

Page 92: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Potato Plants Overexpressing FvPINS

Time4.00 6.00 8.00 10.00 12.00 14.00 16.00 18.00 20.00 22.00 24.00 26.00 28.00

%

0

100

%

0

100

%

0

100 20.14

2.66

19.3418.5120.7621.20

22.4421.69 22.9724.20

9.53

2.63

10.59

9.53

2.65

10.59

20.14

22.97 24.20

R-F 10

R-Z 31

Wild

Alpha-pinene Beta -pinene

R-Z 31

R-F 10

Page 93: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Conclusions

•Engineering with a very strong, constitutive promoter is deleterious to plants (toxicity or altered precursor pool for other pathways)

•Use of specific and/or inducible promoters for engineering terpenoids

Page 94: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Volatiles Produced by Trangenic plants Volatiles Produced by Trangenic plants Influence Insect BeheviorInfluence Insect Behevior

Leaves detached from transgenic Arabidopsis plants expressing the strawberry FaNES1 gene.

Linalool deters aphids

Page 95: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

No Choice Greenhouse Test in No Choice Greenhouse Test in Perspex HoodsPerspex Hoods

Linalool synthase Linalool synthase chrysanthemum T58 chrysanthemum T58 lineslines20 females20 femalesN=6N=6--13 plants per line13 plants per line3 weeks; 22 C3 weeks; 22 C

Page 96: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Thrips population on linalool chrysanthemum 3 weeks after inoculation with 20 females

0

2

4

6

8

10

12

14

16

TOTAL ADULTS LARVAE

Inse

cts

per p

lant

control 1581T58-9

p=0.05p=0.04

Page 97: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

Different Thrip Damage Phenotype in Different Thrip Damage Phenotype in Transgenic Linalool PlantsTransgenic Linalool Plants

Control

only edges

large surface

Linalool

transgenic

only spots

not at the edges

Page 98: Secondary Metabolites: Biochemistry and Role in Plants · Function of Secondary Metabolites: Defense Herbivores (insects, vertebrates) Repellence, deterrence, toxicity Microbes (bacteria,

ConclusionsConclusions

-Terpenoids produced by engineered plants influence insect behavior

-High levels of linalool production deters insects (aphids and thrips) in different plant species