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Introduction to Inorganic Chemistry What is inorganic chemistry? Inorganic Chemistry Organimetallic Bioinorganic Organic vs Inorganic

Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

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Page 1: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Introduction to Inorganic Chemistry

What is inorganic chemistry?Inorganic ChemistryOrganimetallicBioinorganic

Organic vs Inorganic

Page 2: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Introduction to Inorganic Chemistry

Organic vs Inorganic

Page 3: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Introduction to Inorganic Chemistry

Organic vs Inorganic

Page 4: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Chapter 8 An Introduction to Coordination Compounds

8.1 High coordination numbers

8.2 Intermediate coordination numbers

8.1 Low coordination numbers

8.5 Representative ligands

Ligands and nomenclature

8.4 Polymetallic complexes

Isomerism and chirality

8.6 Nomenclature

Constitution and geometry

8.7 Square-planar complexes

8.11 Ligand chirality

8.10 Octahedral complexes

8.9 Trigonal-bipyramidal and square-pyramidal complexes

8.8 Tetrahedral complexes

Page 5: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

History

What is coordination compound?Coordination compounds include compound composed of a metal atom or ion and one or more ligands that formally donate electrons to the metal.

More specifically, a transition metal surrounded by neutral molecules or anions with a definite geometry.

What is ligand?Ligand can be a atom, ion, and molecules.

Page 6: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

History

What is coordination compound?Coordination complexes were known - although not understood in any sense - since the beginning of chemistry, e.g. Prussian blue, Aureolin, and copper vitriol.

The key breakthrough occurred when Alfred Werner proposed, inter alia, that Co(III) bears six ligands in an octahedral geometry.

Prussian blue (German: Preußischblau or Berliner Blau, in English Berlin blue) is a dark blue pigment used in paints and formerly in blueprints. Prussian blue was discovered by accident by painter Heinrich Diesbach in Berlin in 1704-5, which is why it is also known as Berlin blue. (Diesbachwas attempting to create a paint with a red hue.) It has several different chemical names, these being iron(III) ferrocyanide, ferric ferrocyanide, iron(III) hexacyanoferrate(II), and ferric hexacyanoferrate. Commonly and conveniently it is simply called "PB.

Aureolin (sometimes called Cobalt Yellow) is a pigment used in oil and watercolor painting. Its color index name is PY40 (40th entry on list of yellow pigments). It was first made in 1851 and its chemical composition is potassium cobaltinitrite.

Copper(II) sulfate ("sulphate" in most Commonwealth nations) is the chemical compound with the formula CuSO4. This salt exists as a series of compounds that differ in their degree of hydration. The anhydrous form is a pale green or gray-white powder, while the pentahydrate, the most commonly encountered salt, is bright blue. This hydrated copper sulfate occurs in nature as the mineral called chalcanthite. The archaic name for copper(II) sulfate is "blue vitriol" or "bluestone"

Page 7: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Alfred Werner

In 1893, Werner was the first to propose correct structures for coordination compounds containing complex ions, in which a central transition metal atom is surrounded by neutral or anionic ligands.For example, it was known that cobalt forms a "complex" with formula CoCl3•6NH3, but the nature of the association indicated by the dot was mysterious. Werner proposed the structure [Co(NH3)6]Cl3, with the Co3+ ion surrounded by six NH3 at the vertices of an octahedron. The three Cl-are dissociated as free ions, which he confirmed by measuring the electrical conductivity of the compound in aqueous solution.

Nobel Prize for Chemistry1913

For complexes with more than one type of ligand, Werner succeeded in explaining the number of isomers observed. For exemple, he explained the existence of two isomers of "Co(NH3)4Cl3", one green and one purple. Werner proposed that these are two geometric isomers of formula [Co(NH3)4Cl2]Cl, with one Cl- ion dissociated as confirmed by conductivity measurements. The Co atom is surrounded by four NH3 and two Cl ligandsat the vertices of an octahedron. The green isomer is "trans" with the two Cl ligands at opposite vertices, and the purple is "cis" with the two Cl at adjacent vertices.

Page 8: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

History

What is coordination compound?Coordination complexes were known - although not understood in any sense - since the beginning of chemistry, e.g. Prussian blue, Aureolin, and copper vitriol.

The key breakthrough occurred when Alfred Werner proposed, inter alia, that Co(III) bears six ligands in an octahedral geometry.

The theory allows one to understand the difference between coordinated and ionic chloride in the cobalt ammine chlorides and to explain many of the previously inexplicable isomers.

He resolved the first coordination complex into optical isomers,overthrowing the theory that chirality was necessarily associated with carbon compounds.

Page 9: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

History

What is ligand?In chemistry, a ligand is an atom, ion, or molecule that generally donates one or more of its electrons through a coordinate covalent bond to one or more central atoms or ions (these ligands act as a Lewis base).

The ligands that are directly bonded to the metal (that is, share electrons), are called "inner sphere" ligands.If the inner-sphere ligands do not balance the charge of the central atom, this may be done by simple ionic bonding with another set of counter ions (the "outer-sphere" ligands).

The complex of the metal with the inner sphere ligands is then called a complex ion (which can be either cationic or anionic). The complex, along with its counter ions, is called a coordination compound. The size of a ligand is indicated by its cone angle.

Page 10: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

History

Organometallic Compound

Organometallic chemistry is the study of chemical compoundscontaining bonds between carbon and a metal.

Organometallic chemistry combines aspects of inorganic chemistry and organic chemistry.

Organometallic compounds find practical use in stoichiometricand catalytically active compounds.

Electron counting is key in understanding organometallicchemistry. The 18-electron rule is helpful in predicting the stabilities of organometallic compounds. Organometalliccompounds which have 18 electrons (filled s, p, and d orbitals) are relatively stable. This suggests the compound is isolable, but it can result in the compound being inert.

Page 11: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Nomenclature – Common Monodentate Ligands

Classical (or "Werner Complexes"): Ligands in classical coordination chemistry bind to metals.

Organometallic: Ligands are organic (alkenes, alkynes, alkyls) as well as "organic-like" ligands such as phosphines, hydride, and CO.

Bioinorganic: Ligands are those provided by nature, especially including the side chains of amino acids, and many cofactorssuch as porphyrins.

Example: hemoglobin

Cluster: Ligands are all of the above but also include other metals as ligands.

Example Ru3(CO)12

Page 12: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry

In an inner-sphere complex, the ligands are attached directly to a central metal ion: the number of ligands depends on the size of the metal, the identity of the ligands, and the electronic interactions.

Size: ligand, central atom or ionElectron densityMultiple bond

{[Mn(H2O)6]2+SO42-} vs

[Mn(H2O)5SO4]

Page 13: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.1 Low coordination numbers

Coordination number 2; Cu+, Ag+, Au+, they often gain additional ligands to form three- or four- coordinate complexes.

Coordination number 3: with bulky ligands

Position of these complexes in periodic table.

Page 14: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.2 Intermediate coordination numbers

Coordination number 4, 5, 6.They include the vast majority of complexes.

Four-coordination:

Tetrahedral complexes are favoured over higher coordinate complexes if the central atom is small or the ligands large.- ligand-ligand repulsions override the energy advantage of forming more metal-ligand bonds

Square-planar complexes are typically observed for metals with d8 configurations (Rh+, Ir+, Pd2+, Pt2+, Au3+).

Page 15: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.2 Intermediate coordination numbers

Geometric isomerism

Page 16: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.2 Intermediate coordination numbers

Five-coordination:

The energies of the various geometries of five-coordinate complexes differ little from one another and such complexes are often fluxional.

Square pyramidal or trigonal bipyramidal.

Distortions from these ideal geometries are common.

Page 17: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.2 Intermediate coordination numbers

Berry pseudorotation

[Fe(CO)5]; crystal, NMR, IR

Page 18: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.2 Intermediate coordination numbers

Six-coordination:

Octahedral; the most common arrangement, highly symmetric structure.

Distortion

Trigonal-prismatic

distortion

Page 19: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.3 Higher coordination numbers

Larger atoms and ions, particularly those of the f block, tend to form complexes with high coordination number.

Seven-coordination; pentagonal bipyramid, cppedoctahedron, capped trigonalprism – a number of intermediate structures.

Eight-coordination; square antiprismatic, dodecahedral, cubic.

Nine-coordination;

Ten- and twelve-coordination

Page 20: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.4 Polymetallic complexes

Metal cluster; contain M-M

Cage complex; contain ligand-bridged atoms

Page 21: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Ligands and nomenclature8.5 Representative ligands

ChelateBite angelSix-membered rings may be favoured sterically or by electron delocalization through their pi-orbitals

Monodentate, bidentate, tridentate….Ambidentate; Thiocyanate ion (NCS-) – isothiocyanato complex (attach via N atom), thiocyanato complexes (attach via S atom).Nitrite ion (NO2

-) – nitro, nitrito

Page 22: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.4 Polymetallic complexes

Page 23: Organic vs Inorganic - Yonsei University · 2017-11-13 · Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and

Constitution and geometry8.4 Polymetallic complexes