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BD MAX USERS DISCUSS NAATWORK DEVELOPMENTS AND SUCCESSES A report from the 2013 BD MAX User Meeting in Frankfurt, Page 3 BREAKING DOWN DIAGNOSTICS BARRIERS An interview with Dr. Paul Verhoeven Page 5 WINNING THE BATTLE AGAINST CLOSTRIDIUM DIFFICILE INFECTIONS An interview with Dave Thomas Page 6 2013 Vol. 1 MOLECULAR BACTERIOLOGY SHOWS ADVANCES IN DIAGNOSTIC SPEED, ACCURACY AND PATIENT CARE Page 4 Advancing molecular diagnostics

MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

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Page 1: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

BD MAX™ USERS DISCUSS NAATWORK DEVELOPMENTS AND SUCCESSES A report from the 2013 BD MAX™ User Meeting in Frankfurt, Page 3

BREAKING DOWN DIAGNOSTICS BARRIERSAn interview with Dr. Paul VerhoevenPage 5

WINNING THE BATTLE AGAINST CLOSTRIDIUM DIFFICILE INFECTIONSAn interview with Dave ThomasPage 6

2013 Vol. 1

MOLECULAR BACTERIOLOGY SHOWS ADVANCES IN DIAGNOSTIC SPEED, ACCURACY AND PATIENT CAREPage 4

Advancing molecular diagnostics

Page 2: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

LETTER FROM THE EDITOR

AN INDUSTRY TRANSFORMED

More than 50 molecular diagnostics experts recently gathered in Frankfurt for the first BD MAX™

User Meeting. Through presentations, a poster session and informal networking they shared

experiences and best practices. Every day, professionals around the world are rapidly advancing

molecular infectious disease diagnostics. The conference confirmed this exciting trend.

One participant shared his conclusion on diagnosing bacterial gastroenteritis: “We have been

using a suboptimal gold standard for years. For me, culture should, in this domain, clearly be

replaced by molecular.” It is a statement that illustrates the significant transformation that is

taking place in microbiology laboratories worldwide right now. This BD newsletter intends to

help chronicle and spread the trends and successes in molecular diagnostics. We look forward

to hearing your thoughts and feedback on this first issue of NAATWORK News.

ABOUT NAATWORK NEWS

Editorial staff: Dominique Clarysse ([email protected])

Leila Smith ([email protected])

Dominique Clarysse

2 NAATWORK NEWS

BD DiagnosticsTullastrasse 8-1269126 HeidelbergGermanyTel. (49) 6221 305 0Fax. (49) 6221 305 [email protected]/europe/ds/

BD, BD Logo and all other trademarks are the property of Becton, Dickinson and Company. ©2013 BD Becton Dickinson GmbH - General Manger: Roland Pfleger - Registered Office Heidelberg - Commercial Register: Mannheim HRB 330 707

DON’T MISS IT!

NAATWORK Café is a tour of events, also available as webinars, that engage clinical laboratory

professionals in a discussion on the future of molecular diagnostics. Find out more on page 7.

NAATWORK

Page 3: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

3 NAATWORK NEWS

The first BD MAX™ User Meeting held in Frankfurt on June 5

and 6 provided a forum for more than 50 new and expert users

of BD MAX™, supported by BD representatives. According to

Mike Nugent, Global Marketing Manager with BD Diagnostics,

the goal of the User Meeting was to share and network:

“Laboratories all over Europe are doing exciting work using

the BD MAX™. The meeting allowed them to share their research

and successful protocols. The result was better than expected.

Our participants showed boundless interest and involvement.”

One of the recurring topics during the post-presentation feedback

sessions: a call for collaboration and coordination with clinicians

and hospital infection prevention teams.

PRESENTATIONS ON HAI:

Paul Smits, Slotervaart Ziekenhuis Amsterdam:

Why BD MAX™? Sharing the experience of a first line user

Paul Verhoeven, University Hospital of Saint-Etienne:

First evaluation of the BD MAX™ StaphSR assay for

the detection of MRSA strains carrying the mecC gene

PRESENTATIONS ON RESPIRATORY DISEASES:

Kate Templeton, Royal Infirmary of Edinburgh:

A comparative evaluation of the Diagenode Multiplex

PCR kit on the BD MAX™ versus routine in-house

assay used to diagnose Bordetella pertussis

PRESENTATIONS ON ENTERIC DISEASES:

Eric Claas, Leiden University Medical Centre:

Diagnosing viral gastroenteritis: is there a role for BD MAX™?

Marijo Parcina, University Hospital Bonn:

Quick analysis of bacterial diarrhea with BD MAX™

PRESENTATIONS ON USER-DEVELOPED PROTOCOLS:

Alexander Dalpke, University Hospital Heidelberg:

Development & validation of a UDP for Pneumocystis

Ingrid Op Den Buijs, PAMM Veldhoven:

Development & validation of mycobacterium complex assay

BD MAX™ USERS DISCUSS NAATWORK DEVELOPMENTS AND SUCCESSES A report from the 2013 BD MAX™ User Meeting in Frankfurt

2013 BD MAX™ FRANKFURT USER MEETING PRESENTATIONS

NAAT UPDATE

During the two-day meeting, participants shared their findings using BD MAX™

for the detection of infectious organisms such as MRSA, Clostridium difficile,

Bordetella pertussis, Noro- and Rotavirus, TB complex, ... and many more.

Additionally, Courtney Stelling, R&D Manager with BD,

introduced a Total Nucleic Acid Reagents Suite.

Page 4: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

Molecular testing has the potential to significantly improve

the three most important performance criteria of a bacteriological

lab: speed, accuracy and patient care. Although new technologies

address the issues that have traditionally hampered its wide-

spread implementation, molecular diagnostics still has to find

its place in today’s lab.

SPEED AND ACCURACY

Highly accurate, quantitative molecular measurements have been

developed over the years. These molecular techniques offer

independence from laborious cultivation techniques for fastidious

organisms. Molecular tests often also provide the benefits of

improved sensitivity and speed to reportable results.

For laboratories that work with in-house, user-developed assays,

the flexibility of target gene selection allows for the swift

formulation of new diagnostic procedures. Furthermore,

with the rapidly progressing developments in sequencing,

genomic information on new pathogens can be available

within days. This allows for quick adaptation of diagnostic

procedures, as illustrated by the handling of the recent EHEC

outbreak in northern Germany.

In the future, a better characterization of virulence factors within

facultative pathogenic bacteria will be possible based on the

availability of large amounts of genome data. Molecular tests

will help determine the clinical meaning of a positive test result.

PATIENT CARE

Bacteriological results have a significant impact on patient care,

confirming the presence or absence of a bacterial infection.

Molecular tests are especially valuable in delivering a rapid

diagnostic or to verify infections when conventional procedures

can’t. Detection of multi-resistant bacteria also helps the selection

of appropriate treatment strategies and to avoid the spread

of infections.

THE BACTERIOLOGICAL LAB RE-INVENTED

Whereas the advantages of molecular diagnostics are significant,

a number of technical and organizational challenges must

be addressed in order to facilitate the implementation of

molecular testing.

Traditionally, test series in molecular bacteriology are often small,

which hampers cost-effective use of automated high-throughput

platforms. Moreover, commercially available assays were often

validated for one specific device, which led to problems when

combining assays or which made it necessary to operate different

machines. This dual challenge is met by technical solutions that

are currently available in the market. These solutions combine

and fully automate molecular diagnostics but leave the flexibility

of running small series and in-house assays.

Integrated but open platforms meet our demands best.

These devices reduce staff requirements and expand availability

of molecular diagnostics in a microbiology lab setting, without

cutbacks in consultant quality and bacteriology expertise.

They also give the labs the option of using one machine or

technical platform for different assays.

(Continued on page 7)

MOLECULAR BACTERIOLOGY SHOWS ADVANCES IN DIAGNOSTIC SPEED, ACCURACY AND PATIENT CARE Prof. Dr. med. Alexander H. Dalpke

NAAT TRENDS

4 NAATWORK NEWS

Page 5: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

Dr. Paul Verhoeven is a BD MAX™ pioneer. As an early adopter

of NAAT, his team at the University Hospital of Saint-Etienne

was keen to start using the BD MAX™ in 2011.

“For a university hospital like ours, the open platform of the BD

MAX™ is an important advantage. The BD MAX™ offers the

possibility to develop our own assays targeting pathogen and gene

coding for antimicrobial resistance that emerges and spreads

very quickly. For example, it was easy to adapt a multiplex PCR

assay for the detection of methicillin resistant Staphylococcus

aureus strains carrying the mecC gene.”

“In the last year, we have assessed the BD MAX™ Cdiff assay

detecting the toxin B gene of Clostridium difficile disease

screening. In collaboration with reference laboratories in several

European countries, we have participated in the evaluation of

the BD MAX™ Staph SR assay for the detection of the new

MRSA strain carrying the mecC gene. The results presented at

the last ASM general meeting illustrate that the BD MAX™

scores high on specificity, sensitivity and reliability.”

“We have worked in collaboration with BD for the optimization

of the open system reagents. We are now considered a BD MAX™

expert center. Right now, we use our own assays almost exclusively

for the detection of Bordetella pertussis and parapertussis;

Panton-Valentine leukocidin of Staphylococcus aureus; along with

Bartonella and viruses. The BD MAX™ permits an excellent

reactivity of the lab and leads to a slight cost-efficient benefit.”

“Historically, culture testing for pertussis has been slow and insen-

sitive. NAAT has been found more effective in the diagnosis of

pertussis syndrome. Using the BD MAX™, our lab technicians

only spend about 20 minutes on a test. This means we can

now perform testing on a daily basis, instead of once or twice

a week. As children who enter the ER with symptoms of

whooping cough have to stay in the hospital until a diagnosis

is made, this faster detection time has had a significant impact

on the quality and efficiency of our patient care.”

“I believe that NAAT can play a crucial role in these types of time

savings as hospital labs experience ever more pressure to provide

results quickly. NAAT simply is much faster than traditional culture

testing, often with a direct impact on the quality of care.”

Dr. Paul Verhoeven (MD), University Hospital of Saint-Etienne, France

BREAKING DOWN DIAGNOSTICS BARRIERS An interview with Dr. Paul Verhoeven, University Hospital of Saint-Etienne, France

NAAT INTERVIEW

5 NAATWORK NEWS

The BD MAX™ Open System Reagent (OSR) DNA Suite

fully launched in January 2013. This collection of six

new products enables each lab to develop their own

protocols and assays on the BD MAX™.

In February, BD introduced the second assay developed

through a partnership with Diagenode. In April, the CE-

marked enteric viral assay for the detection of Norovirus and

Rotavirus developed through this partnership with Diageno-

de was complemented by a BD-developed enteric bacterial

panel. This qualitative IVD test detects the top four bacterial

organisms causing 95% of bacterial enteric infections.*

On April 9, BD announced FDA clearance for the BD

MAX™ Clostridium difficile assay. It is the third FDA-

cleared BD MAX™ assay.

Also in April, BD shipped the first and only automated

molecular assay the detection of carbapenem-resistant

Enterobacteriaceae (CRE).

In September and October, BD launched two assays with

eXTended Detection Technology, an improved assay design

for identification of Staphylococcus aureus and MRSA.

BD MAX™ UPDATE

* N

ew E

ngla

nd J

ourn

al o

f M

edic

ine;

200

4; 3

50: 3

8-47

.

Page 6: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

Dave Thomas and his team in the microbiology lab of the North

Hampshire Hospital NHS Foundation Trust have been using BD

MAX™ since September 2012 to detect flu strains, Clostridium

diffi cile and Norovirus organisms. The hospital has achieved

great success in fighting Clostridium difficile epidemics using

NAAT-based diagnostics, recording a 64 percent decrease in

patients diagnosed with Clostridium difficile infections after

their implementation. “NAAT has had a significant impact on

our diagnostic quality and our ability to control outbreaks.

I believe molecular is the way forward,” says Thomas.

LAB ORGANIZATION

“Finding skilled personnel and limited weekend staffing have

been long-standing challenges for us. Both factors affect

preparation and processing times and thus the time we need

to produce results. The BD MAX™ is easy to use, so the tests don’t

have to be done by experts. With just thirty minutes of training

and a few days of supervised work, everyone in the lab can use

the BD MAX™. It also produces results faster, often saving us

hours or even days. This allows us to contribute to more efficient

bed and patient management. We can start a test at the end of

a workday or even a workweek and leave it to run. When you

are dealing with a fast-spreading Norovirus outbreak and limited

isolation options, that offers a significant advantage.”

“The BD MAX™ has become an integral part of our workday.

We run Clostridium difficile tests every single day and Norovirus

and flu testing as needed. That is where good coordination

with the hospital’s Control & Infection team comes in,

especially during outbreaks.”

ACCURACY

North Hampshire Hospital NHS Foundation Trust was the first

hospital in the UK to use BD NAAT as its primary means of testing

for Clostridium difficile. After switching to NAAT, the hospital

reduced its rolling three-month average case numbers from 4.67

to 1.66, a 64 percent decline.

“For us, PCR is the only reliable Clostridium difficile test. While it

is more expensive per test, you only need one. The assays are

simple to perform and can provide a result within hours. This allows

us to provide better patient care and to exceed our case number

objectives. The financial consequences are significant as well,

as each Clostridium difficile infection case avoided saves thousands

of pounds,” says Thomas.

THE FUTURE

“Molecular testing has given us significant advances in terms

of diagnostic quality and our ability to control outbreaks. I am

particularly impressed with its real-time results, accuracy and ease

of use. There is a lot of growth-based bacteriology testing that

can move to molecular testing, for example in gram negative

resistance mechanisms such as CRE (carbapenem-resistant

Enterobacteriaceae). I truly believe molecular is the way forward.”

Dave Thomas, General Microbiology Lab Manager, North Hampshire Hospital NHS Foundation Trust, UK

WINNING THE BATTLE

AGAINST CLOSTRIDIUM

DIFFICILE INFECTIONSAn interview with Dave Thomas,

North Hampshire Hospital

NHS Foundation Trust, UK

NAAT INTERVIEW

6 NAATWORK NEWS

Page 7: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,

(Continued from page 4)

Molecular diagnostics have the reputation of being less automated,

laborious methods. To reduce hands-on time, decrease personnel

occupation and facilitate molecular detection, all of the steps

in molecular diagnostics have been automated to some degree

only. Nucleic acid extraction can be done by automated systems

that are available for different sample numbers. Amplification and

detection is most often combined into one step and done by

realtime amplification techniques. Yet, despite those improve-

ments, the different steps are still isolated and most of the

platforms must be combined in some kind of modular manner.

As a result, molecular methods still require specific infrastructure

and expert staff, limiting their 24/7 availability. As patients’

hospital stays steadily decrease, low turnaround times for

bacteriology tests are an absolute must. Offering molecular

tests only five days a week or only once a week to increase

series sizes will likely no longer meet future demands.

To deal with these challenges while maximizing the benefits

of molecular testing, a future division seems likely between

assays that can be run on fully automated, all-in-one devices

by less trained staff at any time and the classical molecular

techniques that address more sophisticated diagnostic questions.

Prof. Dr. med. Alexander H. Dalpke, Dept. of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University, Germany

NAAT TRENDS

7 NAATWORK NEWS

NAAT EDUCATION

NAATWORK Café is a tour of events, also available as webinars, that engage clinical laboratory professionals in a discussion on the future of molecular diagnostics.

UPCOMING NAATWORK CAFÉS Check out and register for upcoming webinars:

http://laboratory-manager.advanceweb.com/webinar/

webinar.aspx?rid=784

MISSED A NAATWORK CAFÉ? All presentations are available online:

http://www.bd.com/ds/learningCenter/presentations/

NAATWork.asp

PAST NAATWORK CAFÉ TOPICS: • Advances in the diagnosis of Clostridium difficile infection:

how molecular diagnostic methods are changing clinical practice and improving patient care

• Antibiotic resistance in healthcare-associated infections: how your laboratory can address the challenges of MRSA and carbapenem-resistant organisms

• Proven ways to boost molecular lab performance by blending lean and automation

• Enteric pathogens: algorithms, applications, and advantages of molecular diagnostics

• TV or not TV? Should screening for T. vaginalis be routine?

• Pre-surgical screening to prevent SSIs: a collaborative effort between the lab and Infection Control

NAATWORK

A longer version of this article previously appeared in Practical Patient Care; 2012; 9: 45.

Bookmark it! www.molecularhub.org

Bringing together experts in a non-commercial, non-promotional environment to foster co-creation and the exchange of ideas,

experiences and knowledge that advance molecular sciences.

Page 8: MOLECULAR BACTERIOLOGY - BD · Traditionally, test series in molecular bacteriology are often small, which hampers cost-effective use of automated high-throughput platforms. Moreover,