Kensaku Mori Ichiro Sakuma

Yoshinobu Sato Christian Barillot

Nassir Navab (Eds.)

Medical Image Computingand Computer-AssistedIntervention - MICCAI2013

16th International Conference

Nagoya, Japan, September 22-26, 2013

Proceedings, Part I

^ Springer

Table of Contents - Part I

Physiological Modeling and Computer-AssistedIntervention

Fast Data-Driven Calibration of a Cardiac Electrophysiology Model

from Images and ECG

Oliver Zettinig, Tommaso Mansi, Bogdan Georgescu,Elham Kayvanpour, Farbod Sedaghat-Hamedani, AH Amr,Jan Haas, Kenning Steen, Benjamin Meder, Hugo Katus,Nassir Navab, Ali Kamen, and Dorin Comaniciu

Toward Online Modeling for Lesion Visualization and Monitoringin Cardiac Ablation Therapy

Cristian A. Linte, Jon J. Cam.p, David R. Holmes III,Maryam E. Rettmann, and Richard A. Robb

Prediction of Cranio-Maxillofacial Surgical Planning Using an InverseSoft Tissue Modelling Approach

Kamal Shahim, Philipp Jiirgens, Philippe C. Cattin,Lutz-P. Nolle, and, Mauricio Reyes

String Motif-Based Description of Tool Motion for Detecting Skill

and Gestures in Robotic SurgeryNarges Ahmidi, Yixin Gao, Benjamin Bejar, S. Swaroop Vedula,Sanjeev Khudanpur, Rene Vidal, and Gregory D. Hager

Global Registration of Ultrasound to MRI Using the LC2 Metricfor Enabling Neurosurgical Guidance

Wolfgang Wein, Alexander Ladikos, Bernhard Fuerst, Amit Shah,Kanishka Sharma, and Nassir Navab

Real-Time Dense Stereo Reconstruction Using Convex Optimisationwith a Cost-Volume for Image-Guided Robotic Surgery

Ping-Lin Chang, Danail Stoyanov, Andrew J. Davison, and

Philip "Eddie" Edwards

Brain Imaging

Combining Surface and Fiber Geometry: An Integrated Approachto Brain Morphology

Peter Savadjiev, Yogesh Rathi, Sylvain Bouix, Alex R. Smith,Robert T. Schultz, Ragini Verma, and Carl-Fredrik Westin

XXX Table of Contents - Part I

Multi-atlas Based Simultaneous Labeling of Longitudinal Dynamic

Cortical Surfaces in Infants 58

Gang Li, Li Wang, Feng Shi, Weili Lin, and Dinggang Shen

Identifying Group-Wise Consistent White Matter Landmarks via Novel

Fiber Shape Descriptor 66

Hanbo Chen, Tuo Zhang, and Tianming Liu

The Importance of Being Dispersed: A Ranking of Diffusion MRI

Models for Fibre Dispersion Using In Vivo Human Brain Data 74

Uran Ferizi, Torben Schneider, Maira Tariq,

Claudia A.M. Wheeler-Kingshott, Hui Zhang, and

Daniel C. Alexander

Estimating Constrained Multi-fiber Diffusion MR Volumes

by Orientation Clustering 82

Ryan P. Cabeen, Mark E. Bastin, and David H. Laidlaw

Connectivity Subnetwork Learning for Pathology and DevelopmentalVariations 90

Yasser Ghanbari, Alex R. Smith, Robert T. Schultz, and

Ragini Verma

Detecting Epileptic Regions Based on Global Brain Connectivity

Patterns 98

Andrew Sweet, Archana Venkataraman, Steven M. Stufflebeam,

He.she.ng Liu, Naoro Tanaka, Joseph Madsen, and Polina Golland

Imaging, Reconstruction, and Enhancement I

Joint Intensity Inhomogeneity Correction for Whole-Body MR Data....

106

Oleh Dzyubachyk, Rob J. van der Geest, Marius Staring,Peter Bornert, Monique Reijnierse, Johan L. Bloem, and

Boudewijn P.F. Lelieveldt

Tissue-Specific Sparse Deconvolution for Low-Dose CT Perfusion 114

Ruogu Fang, Tsuhan Chen, and Pina C. Sanelli

Learning the Manifold of Quality Ultrasound Acquisition 122

Noha El-Zehiry, Michelle Yan, Sara, Good, Tong Fang,S. Kevin Zhou, and Leo Grady

Example-Based Restoration of High-Resolution Magnetic Resonance

Image Acquisitions 131

Ender Konukoglu, Andre van der Kouwe, Mert Rory Sabuncu, and

Brace Fischl

Table of Contents - Part I XXXI

ToF Meets RGB: Novel Multi-Sensor Super-Resolution for Hybrid 3-D

Endoscopy 139

Th.om.as Kohler, Sven Haase, Sebastian Bauer, Jakob Wasza,Thomas Kilgus, Lena Maier-Hein, Hubertus Feuflner, and

Joachim. Hornegger

Attenuation Correction Synthesis for Hybrid PET-MR Scanners 147

Ninon Burgos, Manuel Jorge Cardoso, Marc Modat,

Stefano Pedernonte, John Dickson, Anna Barnes,John S. Duncan, David Atkinson, Simon R. Arridge,Brian F. Button, and Sebastien Ourselin

Low-Rank Total Variation for Image Super-Resolution 155

Feng Shi, Jian Cheng, Li Wang, Pew-Thian Yap, and Dinggang Sh.en

First Use of Mini Gamma Cameras for Intra-operative Robotic SPECT

Reconstruction 1G3

Philipp Matthies, Ka.ni.shka Sharma, Ash Okur, Jose Gardiazaba.1,Jakob Vogel, Tobias Lasser, and Nassir Navab

Registration I

Robust Model-Based 3D/3D Fusion Using Sparse Matchingfor Minimally Invasive Surgery 171

Dominik Neumann, Sasa Grbic, Matthias John, Nassir Navab,Joachim Hornegger, and Rxizvan Ionasec

Iterative Closest Curve: A Framework for Curvilinear Structure

Registration Application to 2D/3D Coronary Arteries Registration 179

Thomas Benseghir, Gregoire Ma.lan.dain, and Regis Vaillant

Towards Realtime Multimodal Fusion for Image-Guided Interventions

Using Self-similarities 187

Mattias Pa,ul Heinrich, Mark Jenkinson, Bari.lom.iej W. Papiez,Sir Michael. Brady, and Julia A. Schnabel

Efficient Convex Optimization Approach to 3D Non-rigid MR-TRUS

Registration 195

Yue Sun, Jing Yuan, Martin Rajchl, Wu Qiu,Cesare Rom.agnoli, and Aaron Fenster

Left-Invariant Metrics for Diffeomorphic Image Registrationwith Spatially-Varying Regularisation 203

Tanya Schmah, Laurent Risser, and Francois-Xavier Via.la.rd

A Generalised Spatio-Temporal Registration Framework for DynamicPET Data: Application to Neuroreceptor Imaging 211

Jieqing Jiao, Julia A. Schnabel, and Roger N. Gunn

XXXII Table of Contents - Part I

Machine Learning, Statistical Modeling, and Atlases I

Constructing an Un-biased Whole Body Atlas from Clinical ImagingData by Fragment Bundling 219

Matthias Dorfer, Rene Donner, and Georg Langs

Learning a Structured Graphical Model with Boosted Top-DownFeatures for Ultrasound Image Segmentation 227

Zhihui Hao, Qiang Wang, Xiaotao Wang, Jung Bae Kim,

Youngkyoo Hwang, Baek Hwan Cho, Ping Guo, and Won Ki Lee

Utilizing Disease-Specific Organ Shape Components for Disease

Discrimination: Application to Discrimination of Chronic Liver Disease

from CT Data 235

Dipti Prasad Mukherjee, Keisuke Higashiura, Toshiyuki Okada,Masatoshi Hori, Yen-Wei Chen, Noriyuki Tomiyama, and

Yoshinobu Sato

Visual Phrase Learning and Its Application in Computed Tomographic

Colonography 243

Shijun Wang, Matthew McKenna, Zhuoshi Wei, Jiamin Liu,

Peter Liu, and Ronald M. Summers

Rising Correspondenceless 3D Point Distribution Models 251

Marco Pereanez, Karim Lekadir, Constantine Butakoff,Com,e Hoogendoorn, and Alejandro Frangi

Robust Multimodal Dictionary Learning 259

Tian Cao, Vladimir Jojic, Shannon Modla, Debbie Powell,Kirk Czymmek, and Marc Niethammer

Bayesian Atlas Estimation for the Variability Analysis of ShapeComplexes 267

Pietro Gori, Olivier Colliot, Yulia Worbe,Linda Marrakchi-Kacem, Sophie Lecomte,

Cyril Poupon, Andreas Hartmann,Nicholas Ayache, and Stanley Durrleman

Computer-Aided Diagnosis and Imaging Biomarkers I

Manifold Regularized Multi-Task Feature Selection for Multi-ModalityClassification in Alzheimer's Disease 275

Biao die, Daoqiang Zhang, Bo Cheng, and Dinggang Shen

Similarity Guided Feature Labeling for Lesion Detection

Yang Song, Weidong Cai, Heng Huang, Xiaogang Wang,Stefan Eberl, Michael Fulham, and Dagan Feng

284

Table of Contents - Part I XXXIII

Large Deformation Image Classification Using Generalized

Locality-Constrained Linear Coding 292

Pei Zhang, Chong-Yaw Wee, Marc Niethammer,

Dinggang Shen, and Pew-Thian Yap

Persistent Homological Sparse Network Approach to Detecting White

Matter Abnormality in Maltreated Children: MRI and DTI Multimodal

Study 300

Moo K. Chung, Jamie L. Hanson, Hyekyoung Lee, Nagesh Adluru,Andrew L. Alexander, Richard J. Davidson, and Seth D. Pollak

Inter-modality Relationship Constrained Multi-Task Feature Selection

for AD/MCI Classification 308

Feng Liu, Chong- Yaw Wee, Huafu Chen, and Dinggang Shen

The Impact of Heterogeneity and Uncertainty on Prediction

of Response to Therapy Using Dynamic MRI Data 316

Manav Bhushan, Julia A. Schnabel, Michael Chappell,

Fergus Gleeson, Mark Anderson, Jamie Franklin,Sir Michael Brady, and Mark Jenkinson

Contrast-Independent Liver-Fat Quantification from Spectral CTExams 324

Paulo R.S. Mendonga, Peter Lamb, Andras Kriston, Kosuke Sasaki,

Masayuki Kudo, and Dushyant V. Sahani

Semi-automated Virtual Unfolded View Generation Method of Stomach

from CT Volumes 332

Masahiro Oda, Tomoaki Suito, Yuichiro Hayashi,

Takayuki Kitasaka, Kazuhiro Furukawa, Ryoji Miyahara,Yoshiki Hirooka, Hidemi Goto, Gen Iinum,a, Kazunari Misawa,

Shigeru Nawano, and, Kensaku Mori

Manifold Diffusion for Exophytic Kidney Lesion Detection

on Non-contrast CT Images 340

Jianfei Liu, Shijun Wang, Jianhua Yao,Marius George Linguraru, and Ronald M. Summers

Intraoperative Guidance and Robotics I

Errors in Device Localization in MRI Using Z-Frames 348

Jeremy Cepek, Blaine A. Chronik, and Aaron Fenster

3-D Operation Situs Reconstruction with Time-of-Flight Satellite

Cameras Using Photogeometric Data Fusion 35G

Sven Haase, Sebastian Bauer, Jakob Wasza, Thomas Kilgus,

Lena Maier-Hein, Armin Schneider, Michael Kranzfelder,

Hubertus Feufiner, and Joachim Hornegger

XXXIV Table of Contents - Part I

Multi-section Continuum Robot for Endoscopic Surgical Clippingof Intracranial Aneurysms 364

Takahisa Koto, Ichiro Okumura, Sang-Eun Song, and Nobuhiko Hata

Inter-operative Trajectory Registration for Endoluminal Video

Synchronization: Application to Biopsy Site Re-localization 372

Anant Suraj Vemuri, Stephane A. Nicolau, Nicholas Ayache,

Jacques Marescaux, and Luc Soler

System and Method for 3-D/3-D Registration between

Non-contrast-enhanced CBCT and Contrast-Enhanced CT

for Abdominal Aortic Aneurysm Stenting 380

Shun Miao, Rui Liao, Marcus Pfister, Li Zhang, and Vincent Ordy

Beyond Current Guided Bronchoscopy: A Robust and Real-Time

Bronchoscopic Ultrasound Navigation System 388

Xiongbiao Luo and Kensaku Mori

Microscope, Optical Imaging, and Histology I

A Stochastic Model for Automatic Extraction of 3D Neuronal

Morphology 396

Sreetama Basu, Maria Kulikova, Elena Zhizhina,

Wei Tsang Ooi, and Daniel Racoceanu

A Viterbi Approach to Topology Inference for Large Scale

Endomicroscopy Video Mosaicing 404

Jessie Mahe, Tom Vercauteren, Benoit Rosa, and Julien Banquet

Spatially Aware Cell Cluster(SpACCl) Graphs: Predicting Outcome

in Oropharyngeal pi6+ Tumors 412

Sahirzeeshan Ali, James Lewis, and Anant Madabhushi

Efficient Phase Contrast Microscopy Restoration Applied for Muscle:

Myotube Detection 420

Seungil Huh, Hang Su, Met Chen, and Takeo Kanade

A Generative Model for OCT Retinal Layer Segmentation

by Integrating Graph-Based Multi-surface Searching and Image

Registration 428

Yuanjie Zheng, Rui Xiao, Yan Wang, and James C. Gee

An Integrated Framework for Automatic Ki-67 Scoring in Pancreatic

Neuroendocrine Tumor 436

Fuyong Xing, Hai Su, and Lin Yang

Table of Contents - Part I XXXV

A Linear Program Formulation for the Segmentation of Ciona

Membrane Volumes 444

Diana L. Delibaltov, Pratim Ghosh, Volkan Rodoplu,Michael Veeman, William Smith, and B.S. Manjunath

Automated Nucleus and Cytoplasm Segmentation of OverlappingCervical Cells 452

Zhi Lu, Gustavo Carneiro, and Andrew P. Bradley

Segmentation of Cells with Partial Occlusion and Part ConfigurationConstraint Using Evolutionary Computation 461

Masoud S. Nosrati and Ghassan Hamarneh

Cardiology I

A Metamorphosis Distance for Embryonic Cardiac Action Potential

Interpolation and Classification 469

Giann Gorospe, Laurent Younes, Leslie Tung, and Rene Vidal

Segmentation of the Left Ventricle Using a Distance Regularized

Two-Layer Level Set Approach 477

Chaolu Feng, Chunming Li, Dazhe Zhao, Christos Davatzikos, and

Harold Litt

Automated Segmentation and Geometrical Modeling of the TricuspidAortic Valve in 3D Echocardiographic Images 485

Alison M. Pouch, Hongzhi Wang, Manabu Takabe,Benjamin M, Jackson, Chandra M. Sehgal,Joseph H. Gorman III, Robert C. Gorman, and

Paul A. Yushkevich

Cardiac Motion Estimation by Optimizing Transmural Homogeneityof the Myofiber Strain and Its Validation with Multimodal Sequences.. .

493

Zhijun Zhang, David J. Sahn, and Xubo Song

A Novel Total Variation Based Noninvasive Transmural

Electrophysiological Imaging 501

Jingjia Xu, Azar Rahimi Dehaghani, Fei Gao, and Linwei Wang

Right Ventricle Segmentation with Probability Product Kernel

Constraints 509

Cyrus M.S. Nambakhsh, Terry M. Peters, AH Islam, and

Ismail Ben Ayed

XXXVI Table of Contents - Part I

Vasculatures and Tubular Structures I

A Learning-Based Approach for Fast and Robust Vessel Trackingin Long Ultrasound Sequences 518

Valeria De Luca, Michael Tschannen, Gdbor Szekely, and

Christine Tanner

Supervised Feature Learning for Curvilinear Structure Segmentation .. .526

Carlos Becker, Roberto Rigamonti, Vincent Lepetit, and Pascal Fua

Joint Segmentation of 3D Femoral Lumen and Outer Wall Surfaces

from MR Images 534

Eranga Ukwatta, Jing Yuan, Wu Qiu, Martin Rajchl, Bernard Chiu,Shadi Shavakh, Jianrong Xu, and Aaron Fenster

Model-Guided Directional Minimal Path for Fully Automatic

Extraction of Coronary Centerlines from Cardiac CTA 542

Liu Liu, Wenzhe Shi, Daniel Rueckert, Mingxing Hu,Sebastien Ourselin, and Xiahai Zhuang

Globally Optimal Curvature-Regularized Fast Marching for Vessel

Segmentation 550

Wei Liao, Ka.rl Rohr, and Stefan Worz

Low-Rank and Sparse Matrix Decomposition for Compressed SensingReconstruction of Magnetic Resonance 4D Phase Contrast Blood Flow

Imaging (LoSDeCoS 4D-PCI) 558

Jana Butter, Peter Schmitt, Gunhild Aandal, Andreas Greiser,Christoph Forman, Robert, Grimm, Joachim Hornegger, and

Andreas Maier

Anatomical Labeling of the Circle of Willis Using Maximum

A Posteriori Graph Matching 566

David Robben, Stefan Sunaeii, Vincent Thijs, Guy Wilms,Frederik Maes, and Paul Suetens

Brain Imaging and Basic Techniques

Normalisation of Neonatal Brain Network Measures Using Stochastic

Approaches 574

Markus Schirmer, Gareth Ball,Serena J. Counsell, A. David Edwards,Daniel Rueckert,, Joseph V. Hajnal, and Paul Aljabar

Localisation of the Brain in Fetal MRI Using Bundled SIFT Features... 582

Kevin Keraudren, Vanessa Kyriakopoulou, Mary Rutherford,Joseph V. Hajnal, and Daniel Rueckert

Table of Contents - Part 1 AAAVii

Surface Smoothing: A Way Back in Early Brain Morphogenesis 590

Julien Lefevre, Victor Intwali, Lucie Hertz-Pannier, Petra S. Hiippi,

Jean-Francois Mangin, Jessica Dubois, and David Germanaud

4D Hyperspherical Harmonic (HyperSPHARM) Representationof Multiple Disconnected Brain Subcortical Structures 598

Ameer Pasha Hosseinbor, Moo K. Chung, Stacey M. Schaefer,

Carien M. van Reekum, Lara Peschke-Schmitz, Matt Sutterer,Andrew L. Alexander, and Richard J. Davidson

Modality Propagation: Coherent Synthesis of Subject-Specific Scans

with Data-Driven Regularization 606

Dong Hye Ye, Darko Zikic, Ben Glocker, Antonio Crirninisi, and

Ender Konukoglu

Non-Local Spatial Regularization of MRI T2 Relaxation Imagesfor Myelin Water Quantification 614

Youngjin Yoo and Roger Tarn

Robust Myelin Quantitative Imaging from Multi-echo T2 MRI UsingEdge Preserving Spatial Priors 622

Xiaobo Shen, Thanh D. Nguyen, Susan A. Gauthier, and Ashish Raj

Is Synthesizing MRI Contrast Useful for Inter-modality Analysis? 631

Juan Eugenio Iglesias, Ender Konukoglu, Darko Zikic, Ben Glocker,Koen Van Leemput, and Bruce Fischl

Diffusion MRI I

Regularized Spherical Polar Fourier Diffusion MRI with OptimalDictionary Learning 639

Jian Cheng, Tianzi Jiang, Rachid Deriche, Dinggang Shen, and

Pew-Thian Yap

On Describing Human White Matter Anatomy: The White Matter

Query Language 647

Demian Wassermann, Nikos Makris, Yogesh Rathi,Martha Shenton, Ron Kikinis, Marek Kubicki, and

Carl-Fredrik Westin

Voxelwise Spectral Diffusional Connectivity and Its Applicationsto Alzheimer's Disease and Intelligence Prediction 655

Junning Li, Yan Jin, Yonggang Shi, Ivo D. Dinov, Danny J. Wang,Arthur W. Toga, and Paul M. Thompson

Auto-calibrating Spherical Deconvolution Based on ODF Sparsity 663

Thomas Schultz and. Sam.uel Groeschel

XXXVIII Table of Contents - Part I

Evaluating Structural Connectomics in Relation to Different Q-space

Sampling Techniques 671

Paulo Rodrigues, Alberto Prats-Galino, David Gallardo-Pujol,Pablo Villoslada, Carles Falcon, and Vesna Prckovska

Tensor Metrics and Charged Containers for 3D Q-space SampleDistribution 679

Hans Knutsson and Carl-Fredrik Westin

Optimal Diffusion Tensor Imaging with Repeated Measurements 687

Mohammad Alipoor, Irene Yu Hua Gu, Andrew J.H. Mehnert,Ylva Lilja, and Daniel Nilsson

Estimation of a Multi-fascicle Model from Single B-Value Data

with a Population-Informed Prior 695

Maxime Taquet, Benoit Scherrer, Nicolas Boumal,

Benoit Macq, and, Simon K. Warfi,eld

Brain Segmentation and Atlases I

Integration of Sparse Multi-modality Representation and Geometrical

Constraint for Isointense Infant Brain Segmentation 703

Li Wang, Feng Shi, Gang Li, Weili Lin, John H. Gilm,ore, and

Dinggang Shen

Groupwise Segmentation with Multi-atlas Joint Label Fusion 711

Hongzhi Wang and Paul A. Yushkevich

Higher-Order CRF Tumor Segmentation with Discriminant Manifold

Potentials 719

Samuel Kadoury, Nadine Abi-Jaoudeh, and Pablo A. Valdes

Fast, Sequence Adaptive Parcellation of Brain MR. Using Parametric

Models 727

Oula Puonti, Juan Eugenio Iglesias, and Koen Van Leemput

Multiple Sclerosis Lesion Segmentation Using Dictionary Learningand Sparse Coding 735

Nick Weiss, Daniel Rueckert, and Anil Rao

Deformable Atlas for Multi-structure Segmentation 743

Xiaofeng Liu, Albert Montillo, Ek. T. Tan, John F. Schenck, and

Paulo Mendonca

Table of Contents - Part I XXXIX

Hierarchical Probabilistic Gabor and MRF Segmentation of Brain

Tumours in MM Volumes 751

Nagesh K. Subbanna, Doina Precup, D. Louis Collins, and Tal Arhel

Robust GM/WM Segmentation of the Spinal Cord with Iterative

Non-Local Statistical Fusion 759

Andrew J. Asman, Seth A. Smith, Daniel S. Reich, and.

Bennett A. Landman

Author Index 7G9