Lightning Assembly Team

Chansup Byun,Majid Seghatoleslami,

Dylan Hutchison, &Darrell Ricke

Abscess Dataset396863 "Homo sapiens" 21131 "Aster yellows phytoplasma“ Artifact 2581 "Francisella tularensis" 1731 "Waddlia chondrophila 2032/99" Artifact 1510 "Monkeypox virus" Artifact 559 "Staphylococcus epidermidis" 478 "Staphylococcus capitis" 367 "Mixed" 86 "Shigella flexneri" 49 "Yersinia enterocolitica W22703" 42 "Francisella cf." 40 "Lactobacillus salivarius CECT 5713" 32 "Actinobacillus pleuropneumoniae" 19 "Stealth virus 1“ Artifact 14 "Borrelia afzelii" 12 "Brachyspira intermedia PWS/A" 11 "Francisella philomiragia" 10 "Taterapox virus"

Francisella tularensis1.89 Mb genome

sequence: AM286280.1 80,282 bases covered 0.042 X Coverage

Coverage Bases0 1,816,4821 73,1562 2,4383 2434 1115 676 987 22

Velvet AssemblyContig Name LenNODE_155_length_215_cov_2.372093 235

NODE_786_length_197_cov_1.035533 217 NODE_430_length_195_cov_3.015385 215 NODE_197_length_181_cov_5.000000 201 NODE_81_length_179_cov_4.245810 199 NODE_281_length_177_cov_1.056497 197 NODE_154_length_159_cov_1.106918 179

Recommendation Based on Vertica-HP product:•Use database for storing the “reference” data for use.

• Multiple copies of data with Offsets• Store the data based on application requirements• Distributed on many networked systems

Advantage:• Speed• Flexibility

• Ease of customization• Reduced cost

There are White Papers available for review.http://www.vertica.com/resources/white-papers/Example from: “The Vertica® Analytic Database Technical Overview White Paper”