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Katia Cezón GBIF Spain, Coordination Unit [email protected] Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW & TOOLS, OVERVIEW

Katia Cezón GBIF Spain, Coordination Unit [email protected] Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

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Page 1: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

Katia CezónGBIF Spain, Coordination Unit

[email protected] Jardín Botánico, Madrid 2014

Mentoring Project 2014France-Portugal-Spain

DATA QUALITY WORKFLOW & TOOLS,

OVERVIEW

Page 2: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

INTEGRATED PUBLISHING TOOLKIT (IPT)

http://www.gbif.es:8080/ipt/

Page 3: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

INTEGRATED PUBLISHING TOOLKIT (IPT)

Biodiversity-related information

- Primary taxon occurrence data- Taxon checklists- General metadata

Data Paper

http://www.gbif.es:8080/ipt/

Page 4: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WHAT WE NEED?

DARWIN CORE ARCHIVE

It’s a new standard that makes use of the Darwin Core terms to produce a single, self-contained dataset for species occurrence or checklist data.

Page 5: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW Dwc

standard format

adaptation

Validation & data quality

control IPT Registration

at GBIF.org

Page 6: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

StandardizeDwC archive

HerbarZoorbarHZL

Othersoftware

DwC 1.2

???????

Darwin Test

Personalizedadaptation

Page 7: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Validation Darwin Test

- Validation- Correction

- Delete invalid ASCII - ICA (Apparent Quality

Index)

http://tools.gbif.org/dwca-validator/

Checks the Darwin Core Archive (files structure)

Satandardice DwCA

Validation & data quality control

IPT Registration at GBIF.org

Page 8: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Satandardice DwCA

Validation & data quality control

IPT Registration at GBIF.org

APPARENT QUALITY INDEX (ICA)

An indicator of the data base quality (records, observations, specimens of natural history collections)

Page 9: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Validation Darwin Test

Satandardice DwCA

Validation & data quality control

IPT Registration at GBIF.org

Page 10: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Satandardice DwCA

Validation & data quality control

IPT Registration at GBIF.org

Page 11: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Satandardice DwCA

Validation & data quality control

Registration at GBIF.orgIPT

Page 12: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Satandardice DwCA

Validation & data quality control

Registration at GBIF.orgIPT

Page 13: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

WORKFLOW

Satandardice DwCA

Validation & data quality control

Registration at GBIF.orgIPT

Page 14: Katia Cezón GBIF Spain, Coordination Unit katia@gbif.es Real Jardín Botánico, Madrid 2014 Mentoring Project 2014 France-Portugal-Spain DATA QUALITY WORKFLOW

Thank you