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Functional Groups are:
• Groups of atoms that give properties tothe compounds to which they attach
Gained Electrons Lo st Electrons
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Common Functional Groups
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Macromolecules
Macromolecules
Macromolecules are formed by a process known as
polymerization.
Monomers
Polymers
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Giant Molecules - Polymers
•
Large moleculesare called polymers
Polymers are built
from smaller molecules called
monomers
Biologists call them
macromolecules
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Examples of Polymers
•Proteins
Lipids
Carbohydrates
Nucleic Acids
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Most Macromolecules arePolymers
•Polymers are made by stringing togethermany smaller molecules calledmonomers
Nucleic Acid Monomer
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Linking Monomers
Cells link monomers by a process called condensation or dehydration synthesis (removing a molecule of water)
This process joins two sugar monomers to make a double sugar
Remov
e H
Remove OH
H 2 O Forms
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Breaking Down Polymers
• Cells breakdownmacromolecule
s by a processcalledhydrolysis(adding amolecule ofwater)
Water added to split a double sugar
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Macromolecules in Organisms
• There are four categories of largemolecules in cells:
Carbohydrates
Lipids
Proteins
Nucleic Acids
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Carbohydrates
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Carbohydrates• Carbohydrate: (also called as sugars)
• General formula can all be written in a simpleform as (CH2O)x
• a polyhydroxyaldehyde or polyhydroxyketone, or
a substance that gives these compounds onhydrolysis
• Rooted in the word “saccharide” (from the Latin,
saccharum, meaning sugar).
• Simple units of sugar are calledmonosaccharides
• Can be linked together to form disaccharides,
oligosaccharides and polysaccharides
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Functions• For Energy
• Used as fuel by our bodies
• For Structural Support
• As roughage or fiber in the diets and is importnat forintestinal health
• As structural component of plant in their cell walls
• As structural component component exoskeleton ofarthropods
•
For Cell Identification• Embedded into the surface of cell membranes as
glycolipids and glycoproteins
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Classes• Monosaccharides
• Disaccharides
• Polysaccharides
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Classification• Monosaccharide: a carbohydrate that cannot be
hydrolyzed to a simpler carbohydrate• they have the general formula CnH2nOn, where n varies
from 3 to 8
• aldose: a monosaccharide containing an aldehyde
group
• ketose: a monosaccharide containing a ketone group
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Monosaccharides• Monosaccharides are classified by their number
of carbon atoms
hexose
heptose
octose
triose
tetrose
pentose
FormulaName
C3 H6 O3
C4 H8 O4
C5 H1 0 O5
C6 H1 2 O6
C7 H1 4 O7
C8 H1 6 O8
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Monosaccharides• There are only two trioses
• aldo- and keto- are often omitted and these compoundsare referred to simply as trioses; although thisdesignation does not tell the nature of the carbonylgroup, it at least tells the number of carbons
Dihydroxyacetone(a ketotriose)Glyceraldehyde(an aldotriose)
CHO
CHOH
CH2 OH
CH2 OH
C= O
CH2 OH
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Monosaccharides• Glyceraldehyde contains a stereocenter and
exists as a pair of enantiomers
L-GlyceraldehydeD-Glyceraldehyde
CHO
C
CHO
CH OH
CH2 OH CH2 OH
HHO
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Fischer Projections• Fischer projection: a two dimensional
representation for showing the configuration oftetrahedral stereocenters
• horizontal lines represent bonds projecting forward
• vertical lines represent bonds projecting to the rear
• the carbon atom at the intersection of the horizontaland vertical lines is not shown
D-Glyceraldehyde
CHO
CH OH
CH2 OH
D-Glyceraldehyde
convert toa Fischer
projection H OH
CHO
CH2 OH
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D,L Monosaccharides• According to the conventions proposed by
Fischer• D-monosaccharide: a monosaccharide that, when
written as a Fischer projection, has the -OH on itspenultimate carbon on the right
• L-monosaccharide: a monosaccharide that, whenwritten as a Fischer projection, has the -OH on itspenultimate carbon on the left
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The four aldotetroses• Enantiomers: stereoisomers that are mirror
images• example: D-erythrose and L-erythrose are enantiomers
• Diastereomers: stereoisomers that are not mirror
images• example: D-erythrose and D-threose are diastereomers
CHO
CH2 OH
OHH
OHH
CHO
CH2 OH
HHO
HHO
CHO
CH2 OH
HHO
OHH
CHO
CH2 OH
OHH
HHO
D-Erythrose L-Erythrose D-Threose L-Threose
Mirrorplane
Mirrorplane
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• Following are the two most common D-
aldotetroses and the two most common D-aldopentoses
D,L Monosaccharides
D-Erythrose D-Threose D-Ribose 2-Deoxy-D-ribose
CHO
CH2 OH
OHH
OHH
CHO
CH2 OH
HHO
OHH
CHO
CH2 OH
OHH
OHH
OHH
CHO
CH2 OH
HH
OHH
OHH
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D,L Monosaccharides• and the three most common D-aldohexoses. Note that
the third of these is an amino sugar• also shown is the most common 2-keto-D-hexose
CHO
CH2 OH
OHH
HHO
OHH
OHH
D-GlucosamineD-Glucose D-Galactose
CHO
CH2 OH
OHH
HHO
HHO
OHH
CHO
CH2 OH
N H2H
HHO
OHH
OHH
CH2 OH
C
CH2 OH
O
HHO
OHH
OHH
D-Fructose
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Cyclic Structure• Monosaccharides have -OH and C=O groups in
the same molecule and exist almost entirely asfive- and six-membered cyclic hemiacetals
• anomeric carbon: the new stereocenter resulting fromcyclic hemiacetal formation
• anomers: carbohydrates that differ in configurationonly at their anomeric carbons
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Haworth Projections• Haworth projections
• five- and six-membered hemiacetals are represented asplanar pentagons or hexagons, as the case may be,viewed through the edge
• most commonly written with the anomeric carbon on
the right and the hemiacetal oxygen to the back right• the designation -means that -OH on the anomeric
carbon is cis to the terminal -CH2OH; - means that it istrans
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Haworth Projections
D-Glucose
-D-Glucopyranose(-D-Glucose)
C
H OH
HHO
HOH
H
CH2 OH
OH
OH( )
H OH
HHO
HH
OH
HCH2 OH
O
O
H
H
H OH
HHO
HOH( )
OH
HCH2 OH
O
-D-Glucopyranose
(-D-Glucose)
+
anomericcarbon
5
5 5
5
CH= O
CH2 OH
OHH
HHO
OHH
OHH
redraw
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Haworth Projections• a six-membered hemiacetal ring is shown by the infix -
pyran-• a five-membered hemiacetal ring is shown by the infix -
furan-
OOPyranFuran
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Conformational Formulas• five-membered rings are so close to being planar that
Haworth projections are adequate to representfuranoses
O
OH( )
H
HHO OH
H H
-D-Ribofuranose
(-D-Ribose)
O
H
OH( )
HHO OH
H H
-D-Ribofuranose(-D-Ribose)
HOCH2 HOCH2
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Conformational Formulas• for pyranoses, the six-membered ring is more
accurately represented as a strain-free chairconformation
-D-Glucopyranose
(chair conformation)
OCH2 OH
HOHO
OH OH( )
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Conformational Formulas• if you compare the orientations of groups on carbons
1, 2, 3, 4, and 5 in the Haworth and chair projections of-D-glucopyranose, you will see that in each case theyare up-down-up-down-up respectively
-D-Glucopyranose
(chair conformation)
OCH2 OHHOHO
OHOH( )
-D-Glucopyranose(Haworth projection)
H
H OH
HHO
H OH( )OH
H
CH2 OH
O5
51
1
4
4
22 33
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Ascorbic Acid (Vitamin C)• L-Ascorbic acid (vitamin C) is synthesized both
biochemically and industrially from D-glucoseCHO
CH2 OH
OHH
HHO
OHH
OHH
D-Glucose
CH2 OH
OHH
HHO
O
OH
both biochemialand industrial
syntheses
L-Ascorbic acid(Vitamin C)
O
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Ascorbic Acid (Vitamin C)• L-Ascorbic acid is very easily oxidized to L-
dehydroascorbic acid• both are physiologically active and are found in most
body fluids
CH2 OH
OHH
HO
O
O
L-Ascorbic acid
(Vitamin C)
L-Dehydroascorbic acid
oxidation
reduction
CH2 OH
OHH
HHO
O
OH
O O
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Oxidation• Reducing sugar: one that reduces an oxidizing
agent• oxidation of a cyclic hemiacetal form gives a lactone
• when the oxidizing agent is Tollens’ solution, Ag
precipitates as a silver mirror
OH-
H OH
HHO
HOH
H
CH2 OH
O
O
A lactone(a cyclic ester)
OH
H OH
HHO
HH
OH
H
CH2 OH
O
A cyclichemiacetal
A g ( N H3 ) 2++ A g+
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Reduction• The carbonyl group of a monosaccharide can be
reduced to an hydroxyl group by a variety ofreducing agents, including H2/M and NaBH4
• reduction of the C=O group of a monosaccharide givesa polyhydroxy compound called an alditol
Ni+
D-Glucitol(D-Sorbitol)
D-Glucose
H2
CHO
CH2 OH
OHH
HHO
OHH
OHH
CH2 OH
CH2 OH
OHH
HHO
OHH
OHH
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Phosphoric Esters• Phosphoric esters are particularly important in
the metabolism of sugars• phosphoric esters are frequently formed by transfer of
a phosphate group from ATP
H
H OH
HHO
HOH
OH
H
CH2 OH
O
-D-glucose
-O- P-OPOPO-AdenosineO
O- O-
O
O-
O+
+ - OPOPO-Adenosine
O-
O
O-
O
ATP
H
H OH
HHO
H OHOH
H
CH2 OPO32 -
O
-D-glucose-6-phosphate
AD P
enzyme
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Formation of Glycosides• Glycoside: a carbohydrate in which the -OH of
the anomeric carbon is replaced by -OR• those derived from furanoses are furanosides; those
derived from pyranoses are pyranosides
• glycosidic bond: the bond from the anomeric carbon to
the -OR group
O
CH2 OH
H
OH
HH
HOH
OHH
OCH3
Methyl -D-
glucopyranoside
O
CH2 OH
H
OH
HH
HO H
OHH
OH
+ CH3
OH+ H2 O
glycosidicbond
-D-glucopyranose
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Amino Sugars
O
CH2 OH
OH
OH
HO
NH-C-CH3
N-Acetyl-D-glucosamine
OCH2 OH
HOHO
N H
OH
C
CH3
O
O
CH2 OH
O
OH
HO
NH-C-CH3CH3 -CH
O O
OCH2 OH
HOO
N H
OH
C
CH3
O
CH3
-CH
COO-
N-Acetylmuramic acid
COO-
H
HH
H
H
H
HH
H
H
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Common monosaccharides• Glucose
• Dextrose, blood sugar
• Lone energy source of the brain
• Fructose
•
Sweetest natural monosaccharides• Found in fruits, nectar, honey
• Galactose
• Found in milk sugar (lactose)
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Disaccharides and Polysaccharides
• Formed by joining together monosaccharides viacondensation reaction
• A condensation reaction always yields a complex
molecule plus water• Bond linking together is called glcosidic bond
• Disaccharieds and polysaccharides are degradedvia hydrolysis reaction, characterized by
breaking of glycosidic bond by water
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Disaccharides• Sucrose
• table sugar; obtained from the juice of sugar cane andsugar beet
• one unit of D-glucose and one unit of D-fructose joinedby an -1,2-glycosidic bond
OHO
HO
O
OH
CH2 OH
OH
HOO
CH2 OH
HOCH2
1
1
2
O
HO
OH
OH
CH2 OH
O
OH
HOO
CH2 OH
HOCH2
1
2
1
-1,2-glycosidic
bond
D-Glucose
D-Fructose
3
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Disaccharides• Lactose
• about 5% - 8% in human milk, 4% - 5% in cow’s milk • one unit of D-galactose and one unit of D-glucose
joined by a -1,4-glycosidic bond
O
HO
HO
OH
O
CH2 OH
O
HO OH OH
CH2 OHOHO O
HO
OH
CH2 OH
O OH
OH
OH
CH2 OH
1
1
4
4
-1,4-glycosidic bond
-1,4-glycosidic bond
D-galactose
D-glucose
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Disaccharides• Maltose
• two units of D-glucose joined by an -1,4-glycosidicbond
OHO
HOOH
OOHO OH
OH
CH2
OH
CH2 OH
O
OH
O
OHHO
OOH
HO
OH
CH2
OH
HOCH2 1
4
-1,4-glycosidic bond
1 4
13
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• Cellulose: the major structural component of
plants, especially wood and plant fibers• a linear polymer of approximately 2800 D-glucose units
per molecule joined by -1,4-glycosidic bonds
• fully extended conformation with alternating 180° flips
of glucose units• extensive intra- and intermolecular hydrogen bonding
between chains
Polysaccharides
O
OHHO
O OO
OH
HO O O
OHHO
HO- CH 2
HO- CH 2HO- CH 2
1
1
1
4
4
4
13
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Polysaccharides• Starch is used for energy storage in plants
• a polymers of -D-glucose units• amylose: continuous, unbranched chains of up to 4000-D-glucose units joined by -1,4-glycosidic bonds
• amylopectin: a highly branched polymer consisting of
24-30 units of D-glucose joined by -1,4-glycosidicbonds and branches created by -1,6-glycosidic bonds
• amylases catalyze hydrolysis of -1,4-glycosidic bonds
• debranching enzymes catalyze the hydrolysis of -1,6-
glycosidic bonds
13
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PolysaccharidesFigure 13.22 Branching in amylopectin and glycogen
13
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Polysaccharides• Glycogen: Used for energy storage in animals
• Composed of D-glucose monomers linked by -1,4-glycosidic bonds and branches created by -1,6-glycosidic bonds
• More highly branched than amylopectin every 12-16
glucose units• Stored in muscles and liver cells
13
P l h id
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Polysaccharides• Chitin: the major structural component of the
exoskeletons of invertebrates, such as insectsand crustaceans; also occurs in cell walls ofalgae, fungi, and yeasts
• composed of units of N-acetyl--D-glucosamine joined
by -1,4-glycosidic bondsCHO
CH2 OH
NH-CCH3H
HHO
HHO
OHH
O
N-Acetyl-D-glucosamine
(insert bottom of Fig 13.23)
13
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Polysaccharides• Bacterial cell walls: prokaryotic cell walls are
constructed on the framework of the repeatingunit NAM-NAG joined by -1,4-glycosidic bonds
O
N HO
O
CH2 OH
O
O
N HHO
CH2 OH
O
O= C O= CCH3 CH3
CHH3 C
COO-
N-Acetyl-D-glucosamine(NAG)
N-Acetylmuramic acid(NAM)
1
4
13
C
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Bacterial Cell Walls• The NAM-NAG polysaccharide is in turn cross-
linked by small peptides• in Staphyloco ccu s aureus , the cross link is a
tetrapeptide
• this tetrapeptide is unusual in that it contains two
amino acids of the D-series, namely D-Ala and D-Gln• each tetrapeptide is cross linked to an adjacent
tetrapeptide by a pentapeptide of five glycine units
13
B i l C ll W ll
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O
N HOO
CH2 OH
O
O
NHO
CH2 OH
O
O= C O= CCH3 CH3
CHH3 C
C= O
N H
A la
Gln
Ly s
A la
L
D
L
D
C= O
N H-( Gly) 5 C----
( CH2 ) 4N H- C-( Gly ) 5 - N H - - - - -
To tetrapeptideside chains
O
O
Bacterial Cell Walls
13
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Bacterial Cell WallsFigure 13.24(d) The peptidoglycan of a bacterial cell wall
13
Pl C ll W ll
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Plant Cell Walls• consist largely of cellulose
•also contain pectin whichfunctions as an intercellularcementing material
• pectin is a polymer of D-
galacturonic acid joined by-1,4-glycosidic bonds
• the major nonpolysaccharideof cell walls, especially inwoody plants, is lignin (nextscreen)
4
O
OHHO
OCOOH
O
O
OHHO
COOH
O
1
-1,4-glycosidic
bond
13
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Plant Cell Walls - LigninFigure 13.25 Lignin
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P l h id
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Polysaccharides• Glycosaminoglycans: polysaccharides based on
a repeating disaccharide where one of themonomers is an amino sugar and the other has anegative charge due to a sulfate or carboxylategroup
• heparin: natural anticoagulant
• hyaluronic acid: a component of the vitreous humor ofthe eye and the lubricating fluid of joints
• chondroitin sulfate and keratan sulfate: components ofconnective tissue
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H l i A id
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Hyaluronic Acid
O
HO
OH
COO-
OHO
N H
CH2 OH
CH3 C O
O O
The repeating unit of hyaluronic acid
1
3
1
4
D-glucuronic acid N-Acetyl-D-glucosamine
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H i
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Heparin
OO
HON H
CH2
OSO3-
OO
HOOH
COO-
OOO
N H
CH2
OH
OO
HO
OSO3-
OO
HON H
CH2
OSO3-
O
CCH3
O
-O3 S
COO-
-O3 SA pentasaccharide repeating unit of heparin
N-acetyl-D-glucosamine
D-glucuronic acid
-O3 S
D-glucosamine
L-iduronic acid
D-glucosamine
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Gl t i
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Glycoproteins• Glycoproteins contain carbohydrate units
covalently bonded to a polypeptide chain• antibodies are glycoproteins
• carbohydrates play a role as antigenic determinants,the portions of the antigenic molecule that antibodies
recognize and to which they bond
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Bl d G S b t
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Blood Group Substances• Membranes of animal plasma cells have large
numbers of relatively small carbohydrates boundto them
• these membrane-bound carbohydrates act as antigenicdeterminants
• among the first antigenic determinants discoveredwere the blood group substances
• in the ABO system, individuals are classified accordingto four blood types: A, B, AB, and O
• at the cellular level, the biochemical basis for thisclassification is a group of relatively small membrane-bound carbohydrates
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ABO Bl d Cl ifi ti
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ABO Blood Classification• in type A, the nonreducing end is NAGal
•in type B it is Gal
• in type AB, both types are present
• in Type O, neither of these terminal residues is present
NAGal Ga l N AGluCell membraneof erythrocyte
-1,4-) -1,3-) -1-)
Fuc
-1,2-)
NAGal = N-acetyl-D-galactosamineGal = D-galactoseNAGlu = N-acetyl-D-glucosamineFuc = L-fucose
missing intype O blood
D-galactose in
type B blood
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L-Fucose• L-fucose is synthesized biochemically from D-
mannose
CHO
OH
CH3
HHO
OHH
H
HHO
An L-monosaccharidebecause this -OH is onthe left in the Fischerprojection
rather than -CH2OH
Carbon 6 is -CH 3
L-Fucose