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Biological Sequences and Patents
Chemical compounds and Patents
Agenda
Acknowledgements: FELICS is funded by the European Commission under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme. Additional funding has been provided by EMBL-EBI and the European Patent Office.
IQ Life sciences - Organizational Structure-
DG1Operations
DG2Operational
Support
DG 3Boards of Appeal
DG4Administration
DG5Legal/Administration
Affairs
PatentGrant Automation
IQLife sciences
InternationalAffairs
President
PatentAdministration
Introduction
Servicesfor
Examiners
Data Acquisition&
VerificationR&D
Sequence Listing
Creation
Research
Publication
Processing
Biological Sequences and Patents
Biological Sequences and Patents
A Patent Application and its different parts
SA0000001
FiguresFigures
ClaimsClaims
DescriptionDescription
SequenceSequence Listing
Biological Sequences and Patents /Sequence Listing
Sequence Listing
Biological Sequences and Patents /Sequence Listing
General Information Part
Sequence(s) part
Standards
Wipo ST25
General Information
Sequence Part
EMBL ASN.1
Biological Sequences and Patents /Sequence Presentation Standards
The Submission Tool
•Submission•Conversion•Multilingual•Formatting•Verification
Biological Sequences and Patents /Sequence Presentation submission tool
The Submission Tool
Biological Sequences and Patents /Sequence Presentation submission tool
Sequence Listing
Creation
Research
Publication
Processing
Biological Sequences and Patents
Front End
SequenceListing files
(ST25)
Online filing
Paper Filing andSequence Listing
on Electronic carrier
Storage of allincoming
sequence listing filesincluding versions
(Legal version)
Sequence Listingversion comparison
(Trimaran, etc.)
LegalPublication
server
Date Stamp
VerificationFormatting
"Scientific"Publication
server
Search Environment
Business rules
Business rules
Business rules
"Non redundant"Patent SequenceDatabase Process
RelationalDatabase
RelationalDatabase
VerifiedSequences
Sequence Listingsfrom
National Patent Offices
Text &Forms OCR
Sequence Listing Verification process
Biological Sequences and Patents /Sequence Listing Value Chain @ EPO
Sequence Listing Verification process
Sequence Listing
Creation
Research
Publication
Processing
Data Publication: International Cooperation
The Trilateral patent offices exchange and publish biological sequence data in collaboration with the Public Database Providers
USPTO
JPO
KIPO
EPO
Biological Sequences and Patents / Published sequences exchange
Non Redundant Patent Sequence Database / Project Overview
Biological Sequences and Patents / Non redundant Patent Sequence Database
Non Redundant Patent Sequence Database / Sequence Capture
Biological Sequences and Patents / Non redundant Patent Sequence Database
Sequence Detection Algorithm:Sequence Detection Algorithm:
Detects the presense of sequences in Detects the presense of sequences in all incoming EPO applications, using all incoming EPO applications, using multipass scanning through different multipass scanning through different detection levelsdetection levels
Data Management Pipelines:Data Management Pipelines:
Enrichment of database Enrichment of database coverage avoiding redundancycoverage avoiding redundancy
Biological Sequences and Patents / Non redundant Patent Sequence Database
2 types of 2 types of NR databasesNR databases
Databaserecord (L2)
Search and Public availability @ EBISearch and Public availability @ EBI
PN PN correctionscorrections
Non Redundant Patent Sequence Database / Publicly available
Chemical compounds and Patents
Biological Sequences and Patents
Extraction of Chemical names in Patents
Parsing chemicals ► Chemical Structures
► IUPAC name
►Link to Patent numbers
systematic namestrivial namesformulae acronymsfragments
OSCAR
Extraction of Chemical names in Patents
Biological Sequences and Patents / Extraction of chemical names from patents
Chemical Information from Patents
Biological Sequences and Patents / Availability of chemicals from patents
Availability of Patent related Data @ EBI
Biological and Chemical Information from Patents
Acknowledgements: FELICS is funded by the European Commission under FELICS, contract number 021902 (RII3) within the Research Infrastructure Action of the FP6 "Structuring the European Research Area" Programme. Additional funding has been provided by EMBL-EBI and the European Patent Office.
