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Fezf2 regulates Brn3b in developing retina 1 Transient Expression of Fez Family Zinc Finger 2 Regulates Brn3b in Developing Retinal Ganglion Cells Chunsheng Qu 1,3,# , Dandan Bian 1,# , Xue Li 1 , Jian Xiao 1 , Chunping Wu 1 , Yue Li 2 , Tian Jiang 1 , Xiangtian Zhou 1 , Jia Qu 1 , Jie-Guang Chen 1 * 1School of Ophthalmology and Optometry and Eye Hospital, Wenzhou Medical University, China State Key Laboratory Cultivation Base and Key Laboratory of Vision Science, Ministry of Health of China, and Zhejiang Provincial Key Laboratory of Ophthalmology and Optometry, Wenzhou, Zhejiang 325000, China. 2Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06520 3Clinical laboratory of LiShui People's Hospital, the Sixth Affiliated Hospital of Wenzhou Medical University, LiShui, Zhejiang 323000, China # C. Qu and D. Bian contributed equally to this work Running Title: Fezf2 regulates Brn3b in developing retina *Corresponding author: Key Laboratory of Visual Science, and School of Optometry and Ophthalmology, Wenzhou Medical University, 270 Xueyuan Road, Wenzhou, Zhejiang 325003, P.R. China. Tel.: +86-577-88067927; Fax: +86-577-88067934. Email Address: Jie-Guang Chen <[email protected]. ac.cn>, <[email protected]> Keywords: Fezf2; Brn3b; Retinal Ganglion Cells; In Utero Electroporation; Gene Knockout; Gene Expression; Transcription Regulation; Neurodevelopment; Mouse Abstract Retinal ganglion cells (RGCs) are projection neurons in the neural retina that relay visual information from the environment to the central nervous system. The early expression of MATH5 endows the post-mitotic precursors with RGC competence and leads to the activation of Brn3b that marks committed RGCs. Nevertheless, this fate-commitment process and specifically, regulation of Brn3b remains elusive. To explore the molecular mechanisms underlying RGC generation in the mouse retina, we analyzed the expression and function of Fez family zinc finger 2 (FEZF2), a transcription factor critical for the development of projection neurons in the cerebral cortex. Fezf2 mRNA and protein were transiently expressed at E16.5 in the inner neuroblast layer and the prospective ganglion cell layer of retina, respectively. Knockout of Fezf2 in the developing retina reduced BRN3B+ cells and increased http://www.jbc.org/cgi/doi/10.1074/jbc.M115.689448 The latest version is at JBC Papers in Press. Published on February 9, 2016 as Manuscript M115.689448 Copyright 2016 by The American Society for Biochemistry and Molecular Biology, Inc. by guest on May 31, 2020 http://www.jbc.org/ Downloaded from

Fezf2 regulates Brn3b in developing retinaTranscription Regulation; Neurodevelopment; Mouse . Abstract. generation in the mouse retina, we analyzed the Retinal ganglion cells (RGCs)

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  • Fezf2 regulates Brn3b in developing retina

    1

    Transient Expression of Fez Family Zinc Finger 2 Regulates Brn3b in Developing Retinal Ganglion

    Cells

    Chunsheng Qu1,3,#

    , Dandan Bian1,#

    , Xue Li1, Jian Xiao

    1, Chunping Wu

    1, Yue Li

    2, Tian Jiang

    1, Xiangtian

    Zhou1, Jia Qu

    1, Jie-Guang Chen

    1*

    1School of Ophthalmology and Optometry and Eye Hospital, Wenzhou Medical University, China State

    Key Laboratory Cultivation Base and Key Laboratory of Vision Science, Ministry of Health of China, and

    Zhejiang Provincial Key Laboratory of Ophthalmology and Optometry, Wenzhou, Zhejiang 325000,

    China.

    2Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven,

    CT 06520

    3Clinical laboratory of LiShui People's Hospital, the Sixth Affiliated Hospital of Wenzhou Medical

    University, LiShui, Zhejiang 323000, China

    # C. Qu and D. Bian contributed equally to this work

    Running Title: Fezf2 regulates Brn3b in developing retina

    *Corresponding author:

    Key Laboratory of Visual Science, and School of Optometry and Ophthalmology,

    Wenzhou Medical University, 270 Xueyuan Road, Wenzhou, Zhejiang 325003, P.R. China.

    Tel.: +86-577-88067927; Fax: +86-577-88067934.

    Email Address: Jie-Guang Chen ,

    Keywords:

    Fezf2; Brn3b; Retinal Ganglion Cells; In Utero Electroporation; Gene Knockout; Gene Expression;

    Transcription Regulation; Neurodevelopment; Mouse

    Abstract

    Retinal ganglion cells (RGCs) are projection

    neurons in the neural retina that relay visual

    information from the environment to the central

    nervous system. The early expression of MATH5

    endows the post-mitotic precursors with RGC

    competence and leads to the activation of Brn3b

    that marks committed RGCs. Nevertheless, this

    fate-commitment process and specifically,

    regulation of Brn3b remains elusive. To explore

    the molecular mechanisms underlying RGC

    generation in the mouse retina, we analyzed the

    expression and function of Fez family zinc finger

    2 (FEZF2), a transcription factor critical for the

    development of projection neurons in the cerebral

    cortex. Fezf2 mRNA and protein were transiently

    expressed at E16.5 in the inner neuroblast layer

    and the prospective ganglion cell layer of retina,

    respectively. Knockout of Fezf2 in the developing

    retina reduced BRN3B+ cells and increased

    http://www.jbc.org/cgi/doi/10.1074/jbc.M115.689448The latest version is at JBC Papers in Press. Published on February 9, 2016 as Manuscript M115.689448

    Copyright 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

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  • Fezf2 regulates Brn3b in developing retina

    2

    apoptotic cell markers. Fezf2 knockdown by

    retinal in utero electroporation diminished BRN3B,

    but not the coexpressed ISLET1 and BRN3A,

    indicating that the BRN3B decrease was the cause,

    not the result, of the overall reduction of BRN3B+

    RGCs in the Fezf2 knockout retina. Moreover, the

    mRNA and a promoter activity of Brn3b were

    increased in vitro by FEZF2, which bound to a 5´-

    regulatory fragment in the Brn3b genomic locus.

    These results indicate that transient expression of

    Fezf2 in the retina modulates the transcription of

    Brn3b and the survival of RGCs. This study

    improves our understanding of the transcriptional

    cascade required for the specification of RGCs and

    provides novel insights into the molecular basis of

    the retinal development.

    Introduction

    Retinal ganglion cells (RGCs) are generated from

    a pool of retinal progenitor cells (RPCs). In all

    vertebrates examined, RGCs are the first-born

    neurons in the retina. In mice, multipotent RPCs

    begin to exit mitosis and differentiate into RGC-

    competent precursors around embryonic day 11

    (E11). RGC-competence is fundamentally a cell-

    intrinsic process that is activated by the early

    expression of basic helix–loop–helix (bHLH)

    transcription factor MATH5, a targeted deletion of

    which blocks the formation of most RGCs (1).

    MATH5 is expressed during or after the terminal

    mitosis of RPCs (2), leading to a regulatory

    cascade for RGC development. MATH5 induces

    the expression of class IV POU-domain

    transcription factor Pou4f2 (also known as

    BRN3B), which is essential for the survival of

    differentiated ganglion cells (3,4). Remarkably,

    when Brn3b is selectively deleted, a significant

    portion of RGCs dies by an enhanced apoptosis

    (5,6). Moreover, BRN3B acts as a safeguard

    mechanism by repressing cell differentiation of

    amacrine and horizontal cells during the fate

    commitment of RGCs (7). Although BRN3B

    marks committed RGCs, it regulates RGC

    maturation together with LIM-homeodomain

    transcription factor ISLET1 that co-expresses with

    BRN3B in post-mitotic, differentiating RGCs (8-

    10).

    MATH5 is critical for the competence and

    hence the formation of RGC (1,2,11). The

    regulation of fate commitment of RGC from the

    competent cells is unclear since MATH5+

    progenitors have the potential to give rise to all

    seven major retinal cell types (12). In addition,

    the temporal expression patterns of Math5 and

    Brn3b mRNA are not identical. Brn3b show a

    progressive increase starting from E12.5 and

    persists at E16.5 when Math5 starts to decline

    (2,5,13). A recent lineage tracing study of Math5-

    expressing cells in the retina also argues that not

    all of RGCs descends from MATH5+ progenitors

    (14). Therefore, the precise transcriptional cascade

    leading to the generation of RGCs remains to be

    explored.

    RGCs transmit visual information from the

    environment to the central nervous system and are

    the sole projection neurons in the retina. The

    projection neurons in the cerebral cortex have

    been extensively studied by in vivo genetic

    manipulations. It was found that transcription

    factor FEZF2 (also known as FEZL and ZFP312)

    was expressed by the early neural progenitors in

    the ventricular zone of the dorsal telencephalon.

    Zinc finger protein FEZF2 represses the

    expression of Hes5 in the proliferating neural stem

    cells (15,16) and regulates the differentiation of

    telencephalic precursors from mouse embryonic

    stem cells (17). Fezf2 is required for the proper

    specification and differentiation of subcerebral

    projection neurons in the deep layers of cerebral

    cortex (18-20). Overall, these observations led us

    to hypothesize that Fezf2 may regulate

    specification of the retinal projection neuron,

    RGCs.

    In this study, we have examined the

    expression and function of Fezf2 in the developing

    retinas. We found that Fezf2 was transiently

    expressed in retinas during the generation of

    RGCs. To investigate the role of Fezf2, we

    inhibited its expression by RNA interference and

    deleted the gene by conditional Fezf2-knockout in

    the retina. Our results showed that knockdown and

    knockout of Fezf2 led to BRN3B inhibition and

    impaired the formation of RGCs. Moreover,

    FEZF2 regulated the transcription of Brn3b by

    binding to a 5’-regulatory sequence of the Brn3b

    locus.

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  • Fezf2 regulates Brn3b in developing retina

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    Experimental Procedures

    Animals and Genotyping

    Animal procedures were performed by the

    protocol approved by Animal Care Committee of

    Wenzhou Medical University. Tg (Fezf2-EGFP)

    mice were created by the GENSAT project

    (http://www.gensat.org/index.html) and obtained

    from Mutant Mouse Regional Resource Center

    (MMRC, USA). Fezf2flox/flox

    mice were kindly

    provided by Nenad Sestan at Yale University. The

    exon 2, which encodes amino acids 1-279 of 455

    in FEZF2, was targeted for removal (21). Tg(Six3-

    cre)69Frty mouse was created by Yasuhide Furuta

    at RIKEN Center for Developmental Biology in

    Japan (22), and was initially obtained from Lin

    Gan at University of Rochester Medical Center.

    Dr. Furuta kindly granted permission for its use by

    our group. The Fezf2 second exon was deleted in

    retinas by crossing Fezf2flox/flox

    and Six3-Cre mice.

    The retina-specific knockout of Fezf2 was

    identified by PCR genotyping using three primers

    located in exon 1-3 of Fezf2 as described before

    (21). The loss of Fezf2 expression was further

    confirmed by quantitative PCR (q-PCR) or

    Western blot in one eye whereas the counterpart

    eye from the same embryo was taken for the

    knockout study.

    Tissue preparation

    Mouse pups were put on ice to induce

    hypothermia while pregnant dams were

    anesthetized with Ketamine 100 mg/kg and

    Xylazine 10mg/kg. Eyes from prenatal mice were

    enucleated under a dissecting microscope and

    fixed by immersion in 4% paraformaldehyde

    (PFA). All tissues were cryoprotected in 30%

    sucrose at 4°C, frozen by liquid nitrogen vapor,

    and then embedded in OCT compound (Sakura

    Tissue Tek, Torrance, CA). Cryosections of 16 μm

    were mounted in Superfrost microscope slides

    (Fisher Scientific, PA) for in situ

    hybridization(ISH) and immunofluorescence (IF)

    staining.

    Immunostaining

    We performed IF staining in the developing

    retinas to determine the expression of molecular

    markers of retinal cells. Cryosections of retinas

    were washed and blocked at room temperature for

    2 hours in a blocking solution (5% donkey normal

    serum plus 1% BSA, 0.2% glycine, 0.2% lysine

    and 0.3% Triton). The sections were incubated

    overnight at 4°C with primary antibodies diluted

    in the blocking solution. The antibodies used in

    this study were mouse anti-SMI32 (1:200,

    Covance, #14942601), goat anti-BRN3B (1:50,

    Santa Cruz Biotechnology, sc-31989), rabbit anti-

    MATH5 (1:200, Abcam, ab78046), rabbit anti-

    ISLET1 (1:200, Abcam, ab20670), rabbit anti-

    CASPASE III (1:200, Cell Signaling Technology,

    #9622), goat anti-BRN3A (1:50, Santa Cruz

    Biotechnology, sc-31984), and rabbit anti-FEZF2

    (1:500, Abcam, ab69436). The samples were

    processed with secondary antibodies: CyTM

    3-

    conjugated anti-rabbit IgG and dylightTM

    549-

    conjugated anti-Goat IgG (Jackson

    ImmunoResearch, Laboratories, PA) at a 1:400

    dilution. Fluorescence images were taken using a

    laser scanning confocal microscope (Zeiss).

    RNA in situ hybridization

    Nonradioactive RNA in situ hybridizations of

    Fezf2 were performed as described previously (18).

    Digoxigenin (DIG)-labeled Fezf2 riboprobe

    (corresponding to nucleotides 1241–1734 of

    NM_080433) was generated by in vitro

    transcription from a linearized TopoII-Fezf2

    plasmid. The cryosections were hybridized with

    the probe in a hybridization buffer (50%

    formamide, 4XSSC, 50 mM NaH2PO4, 100 μg/ml

    t-RNA, 7.5% Dextran Sulfate, 1X Denharts and

    500 μg salmon sperm DNA) overnight at 65°C.

    After high-stringency post-hybridization washes,

    the hybridization signal was detected with an

    alkaline phosphatase-conjugated anti-DIG

    antibody and developed using NBT/BCIP

    chromogen (Roche, IN). Hybridization pictures

    were taken using a Nikon microscope (SMZ1500)

    and an Olympus microscope (EX41).

    Plasmid Constructs

    For in vivo inhibition of Fezf2 expression, we

    used Zfp312 siRNA-1 and Zfp312 siRNA-2 with

    targeting sequence

    GGAGAACTCGGCCTTGACA at 775-793, and

    GGTGTTCAATGCTCACTAT at 886-904, of the

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  • Fezf2 regulates Brn3b in developing retina

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    coding region of Fezf2, respectively. The

    scrambled scRNA-1 and scRNA-2 were created by

    introducing three mutations in the target sequences.

    The Zfp312 siRNA-1 and its scramble were cloned

    in the lentiviral vector pLVTH while Zfp312

    siRNA-2 and its scramble were created based on

    pCGLH. All these constructs have been verified

    in the previous study of Fezf2 functions in the

    cerebral cortex (18). For Fezf2 expression, full-

    length Fezf2 was cloned into pCAGEN (Addgene)

    that harbors a CAG promoter. For chromatin

    immunoprecipitation (ChIP), a V5 tag

    (GKPIPNPLLGLDST) was inserted into Fezf2-

    pCAGEN and pCAGGS-GFP following the

    startup codon ATG of Fezf2 and GFP, respectively,

    by PCR in-frame cloning.

    To measure the promoter activity in the 5’-

    regulatory region of Brn3b, a conservative one kb

    fragment upstream from starting site of Brn3b was

    amplified by PCR using primers

    (tcgctttcttccttctctgaa and

    cggcaataatctaataatagctgtcaa). The PCR product

    was cloned into pGL4.18, a promoterless firefly

    luciferase vector co-expressing neomycin

    resistance gene (Promega). Mouse neuroblastoma

    N2a cells were transfected with the pGL4.18-

    promoter and cultured in the presence of G418 for

    two months to select the cells stably expressing the

    plasmid. All constructs were confirmed by

    sequencing prior to the in vivo and in vitro

    experiments.

    Retinal in utero electroporation

    Plasmids were delivered to the developing

    retina by retinal in utero electroporation (IUE)

    (23). Briefly, E13.5 pregnant mice were

    anesthetized and attached to a clean table. The

    abdominal cavity was opened to expose the uterine

    horns. DNA solution (4 μg/μl in Tris-EDTA buffer

    containing 0.1% fast green) were injected through

    the uterus wall using a polished pulled glass

    micropipette. The head of each embryo was placed

    between tweezer-type electrodes, and five square

    electric pulses (38 V, 50 ms) were passed at one-

    second intervals using a BTX electroporator. The

    wall and skin of the abdominal cavity were aligned

    and sutured. The embryos were allowed to develop

    in vivo until E17.5 or P7. Then the mice were

    sacrificed to remove the brains together with eyes

    for fixation in PFA.

    FACS sorting:

    To study the effect of Fezf2, we isolated

    E17.5 retinas from the Fezf2-siRNA-transfected

    mice. Retinas were peeled from the eyeballs and

    collected under a stereomicroscope (ZEISS).

    The tissues were minced and incubated with 0.05%

    trypsin for 8 min at 37°C. Single cell suspensions

    were prepared by trituration, suspension, and

    filtration. GFP+ cells were separated by

    fluorescence-activated cell sorting (FACS) using

    FACSAria II cell sorter (BD Biosciences) and

    were taken for measuring the gene expression by

    quantitative PCR (q-PCR).

    Real-time RT-PCR

    To quantitate the gene expression of Fezf2

    and Brn3b, we synthesized cDNA from the RNA

    isolated from the retina (SuperScriptTM

    First-

    Strand Synthesis System, Invitrogen).

    Quantitative PCR (q-PCR) was performed using

    an ABI 7900 system (Applied Biosystems) and

    monitored based on SYBR Green I dye detection

    with the primer sets for Fezf2

    (accatggtctccagggaag; tcggaacgcatctccttg) and

    Brn3b (tcgctttcttccttctctgaa;

    cggcaataatctaataatagctgtcaa). The primer sets are

    unique to the targeted genes and do not map to any

    other genes in the mouse genome according to

    blast search. Gene expression levels were

    normalized to a reference gene Actin. The Ct

    value was defined as the number of PCR cycles

    required for the fluorescent signal to grow beyond

    a threshold.

    Chromatin immunoprecipitation

    Chromatin immunoprecipitation (ChIP) was

    performed by following the protocol of EZ CHIP

    KIT (Millipore, 17-371). N2a cells were

    transfected with pCAG-V5-Fezf2 and pCAG-V5-

    GFP. The cells were crosslinked with 1% PFA

    and lysed on the ice. The lysates were sonicated to

    shear the chromatin and incubated overnight at

    4°C with anti-V5 antibody bound to Dynal Protein

    A/G beads (1:10; Abcam, ChIP Grade ab9116).

    The precipitate from V5-FEZF2 and V5-GFP in

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  • Fezf2 regulates Brn3b in developing retina

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    Dynabeads was extensively washed and eluted at

    65°C for 15 min with Elusion Buffer (1% SDS, 10%

    1M NaHCO3 in H2O). The eluted protein-

    chromatin complexes were reverse-crosslinked by

    incubation with 5M NaCl overnight at 65°C. Both

    ChIPed and input DNA were treated with RNaseA,

    proteinase K and then followed by DNA

    purification.

    PCR and q-PCR of ChIP DNA

    To determine if FEZF2 binds to Brn3b

    genomic DNA, we amplified a tentative regulatory

    region of Brn3b (-315 ~ +310) (chr8: 78436342-

    78436967) by PCR with a primer set

    (GTGCAGGCTGCCTGCGTGA;

    CCGAAGCACCGACCTGGCTAG). The input

    DNA from the transfected cells was taken as a

    positive control for gel analysis of ChIP DNA. In

    a similar manner, the region covering FEZF2

    binding motifs (CAGCAACC) (-230~-137) was

    examined by q-PCR with primers

    (GCAGGCTCCGGTCCTT;

    ACAGCAGAGCGCCTGC). A part of 3’UTR of

    Brn3b (1507 to 1595) was amplified as a negative

    control by primers

    (ACCGGAATTGTTTTCTGATAGC;

    CTTTCCCTTCGCCCTCTTT).

    Data analysis

    For all q-PCR and the luciferase assay, data

    were presented as mean±SD from three

    independent experiments with duplication of

    reading. For cell counting from the

    immunostaining, mean and standard deviation

    were calculated from 12 sections based on 3-4

    samples (eyes). Control and the experimental

    group were compared by Independent-Samples T

    Test using SPSS 17.0 software (SPSS Inc, USA).

    * designates a statistic difference with *p

  • Fezf2 regulates Brn3b in developing retina

    6

    compared with the control at E17.5 (Fig 3C).

    Knocking out Fezf2 attenuated Brn3b mRNA

    levels (Fig 3C) and reduced BRN3B protein in the

    isolated retina (Fig 3D). The number of BRN3B+

    cells was reduced in the retinal sections from the

    knockout mice (Fig 3E). The wild-type retina had

    42.6 ± 3.0 BRN3B+ cells (per field, 40x) in the

    GCL, which decreased to 23.8 ± 2.1 when Fezf2

    was deleted (Fig 3F). We also noticed an almost

    complete reduction of BRN3B+ cells in the NBL

    (Fig 3E and 3F). A few of BRN3B+ cells

    scattered in NBL of the wild-type mice represent

    the newly generated ganglion cells en route to the

    GCL.

    Previous studies have established that Brn3b

    is required for preventing nascent RGCs from

    apoptotic cell death during retinal development

    (5,26). Therefore, we investigated apoptotic cells

    in control and Fezf2-null retinas by the activation

    of CASPASE III. The cells with activated

    CASPASE III were found in the GCL of Fezf2-/-

    retina (Fig 3E). Fezf2-deleted retina had a 2.5-fold

    more of CASPASE III+ cells than did the wild-

    type at E17.5 (Fig 3G) when maximum apoptosis

    occurs in the Brn3b-knockout mice (5). The

    number of apoptotic cells in the Fezf2 knockout

    retina is comparable with that in the Brn3b-deleted

    retina at E17.5 (5). The increase in apoptosis in

    the Fezf2-/- retina suggests that Fezf2 is needed for

    the proper function of Brn3b in the developing

    retina.

    The reduction of RGC marker BRN3B was

    similarly observed in the P7 retina. In Fezf2-null

    retinas, BRN3B+ cells were reduced to about 47.3%

    of those in wild-type littermates (Fig 4A and 4B).

    As an alternative approach to determining the cell

    types that reduced in Fezf2 (-/-) retinas, we

    immunostained retinas with anti-SMI-32, which

    predominantly labels the axons of RGCs (6). As

    shown in Fig 4C, Fezf2(-/-) retinas had a

    decreased population of SMI-32 immunoreactive

    processes, suggesting a loss of RGC axons.

    Consistently, the optic nerve appeared thinner in

    the Fezf2-deleted retina as compared with the

    control (Fig 4D). In addition, we noticed that

    axons from Fezf2 knockout RGCs occasionally

    bifurcated within the retina (Fig 4C), reminiscence

    of aberrant axonal trajectories as seen in the Brn3b

    knockout retina (27). All these results support that

    the transient expression of Fezf2 is essential for

    the proper expression of Brn3b and formation of

    RGCs.

    3. Fezf2 knockdown inhibits BRN3B

    expression

    Fezf2 knockout reduced BRN3B+ RGCs in

    the retina, either as direct effects of inhibition of

    Brn3b expression or as effects of developmental

    changes leading to loss of BRN3B+ RGCs

    indirectly. To determine whether the loss of

    BRN3B+ RGCs was caused by a cell autonomous

    or a non-cell autonomous mechanism, we knocked

    down Fezf2 in a small population of retinal cells

    within the context of a healthy environment by

    retinal in utero electroporation (IUE). Fezf2 in the

    developing retina was knocked down with

    lentiviral shRNA that specifically inhibit Fezf2

    expression by RNA interference (18). Plasmid

    pLVTH-Fezf2-siRNA-1 that harbors a reporter

    gene Gfp was delivered into the eyecups of E13.5

    embryos by IUE. The consequences of Fezf2

    inhibition were examined in the transfected retinas

    at E17.5, one day after the maximal expression of

    endogenous Fezf2 (Fig 1 and 2). The cells

    expressing the siRNA moved to the GCL normally

    as those expressing pLVTH-Fezf2-scRNA-1, a

    scramble RNA that does not target to any

    sequences. This result suggests that the inhibition

    of Fezf2 does not interfere with the normal

    migration of RGCs. We analyzed the expression

    of marker genes, MATH5, ISLET1, BRN3B in the

    transfected cells by IF. Substantial populations of

    scramble RNA-electroporated cells expressed

    MATH5, ISLET1, and BRN3B as measured by

    their colocalization with the co-transfected GFP

    (Fig 5A). MATH5 and ISLET1 were expressed

    similarly in the Fezf2-siRNA-transfected cells as

    in the scramble transfectants (MATH5 siRNA

    24.8%, scRNA23.2%; ISLET1 siRNA 23.8%,

    scRNA21.4%). In contrast, compared to the

    scrambled control, introducing Fezf2-siRNA-1

    resulted in a massive reduction of BRN3B-positive

    cells (siRNA 1.1%, scRNA17.2%) (Fig 5B).

    Likewise, Fezf2-siRNA-2, but not the

    correspondent scramble control, diminished the

    BRN3B+ cells in the developing retina (data not

    shown). The similar effect introduced by two

    siRNAs that target to different locations in the

    FEZF2 supports that the inhibition of BRN3B was

    attributed to the knockdown of FEZF2 specifically.

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    Fezf2 inhibition abolished BRN3B+ cells, but not

    ISLET1 that coexpresses with BRN3B,

    demonstrating that Fezf2 is essential for the

    expression of Brn3b, rather than controls the

    survival of BRN3B + RGCs directly.

    In mature retinas, BRN3A and BRN3B are

    each expressed in approximate 70% RGCs in an

    overlapping pattern. Since Brn3a was considered

    as a downstream target of Brn3b (28), we

    evaluated the expression of BRN3A in the cells

    knocking down with Fezf2-siRNA-2. Fezf2

    inhibition did not change significantly the ratio of

    colocalization of BRN3A+ and the transfectants

    (Fig 5D and 5E), indicating that Fezf2 inhibition

    had no effect on the expression of BRN3A. Our

    result is consistent with the previous study with a

    knock-in alkaline phosphatase to visualize

    individual genetically altered RGCs. It was found

    that Brn3b is not required for the maintenance of

    Brn3a expression in the RGCs. The loss of Brn3a

    in Brn3b-null retinas is more likely due to an

    overall reduction of the BRN3A+ RGC number

    rather than the inhibition of Brn3a expression (27).

    Since FEZF2 is a transcription factor, we

    envisioned that the transcription and mRNA level

    of Brn3b may be subject to the regulation by

    FEZF2. To test this, we inhibited the Fezf2

    expression by electroporating pLVTH-Fezf2-

    siRNA-1 and pLVTH-Fezf2-scRNA-1 plasmids

    into the eyecups of E13.5 embryos. The

    electroporated cells were dissociated from the

    retinas at E17.5 and isolated by FACS on the basis

    of expression of the reporter GFP. Assays with q-

    PCR revealed that Fezf2-siRNA-expressing cells

    had a decreased level of Brn3b mRNA relative to

    those expressing the scramble control, following

    the inhibited expression of Fezf2 by the

    interference RNA (Fig 5C). This data suggests that

    Brn3b depends on the transient expression of

    Fezf2 during the retinal development.

    To determine if FEZF2 is a determinant of

    Brn3b expression in vivo, we also performed a

    gain of functional study by in utero

    electroporation of Fezf2-pCAGEN into the

    developing retina. Expression of Fezf2 under a

    CAG promoter resulted in overall inhibitions of

    RGC-related genes including Math5, Islet1 and

    Brn3b (Fig 6). A strong ectopic expression of this

    transcription factor may alter the phenotype of

    host cells dramatically. It was found that striatal

    progenitors change their fate from medium spiny

    neurons to cortical-like projection neurons after

    ectopic expression of Fezf2 (29). The intrinsic

    transient expression, but not a high and sustained

    expression of Fezf2, is essential for RGC

    development in the retina.

    4. FEZF2 binds to and activates a 5’-

    regulatory region of Brn3b

    Since both knockout and knockdown of Fezf2

    decreased Brn3b mRNA in retinas (Fig 3C and

    4C), Fezf2 may regulate Brn3b at the transcription

    level. FEZF2 acted as a histone deacetylase-

    associated repressor down-regulating multiple

    oncogenes through direct binding to their

    promoters (30). In zebrafish, FEZF2 binds to a

    core consensus-binding site (CAGCAACC), by

    which the transcription factor drives a forebrain

    enhancer activity of reporter genes both in vitro

    and in vivo (31). Four contiguous FEZF2 binding

    motifs are located at -274, -195, +21, +211 of the

    transcriptional starting site of Brn3b locus (Fig

    7A). We cloned this tentative regulatory region

    containing the Fezf2-binding motifs into pGL4.18,

    a luciferase reporter vector for measuring

    promoter activity. The pGL4.18-Brn3b-promoter

    was stably expressed in Neuroblastoma N2a cells,

    which then were transiently transfected with

    Fezf2-pCAGEN and pCAGEN, or pLVTH-Fezf2-

    siRNA-1 and pLVTH-Fezf2-scRNA-1. The

    relative luciferase activity of Fezf2-transfected

    cells was 2.1-fold higher than that of control.

    Conversely, the activity of Fezf2-siRNA-

    transfected group was decreased by 51.6% as

    compared to those of the scrambled control (Fig

    7B). The results indicate that this regulatory

    sequence near the five prime untranslated region

    (5’UTR) is positively regulated by FEZF2 and

    constitutes a part of Brn3b promoter.

    To investigate whether the increased

    transcriptional activity mediated by the Brn3b-

    promoter resulted from FEZF2 binding, we

    generated V5-tagged GFP and Fezf2 expression

    constructs and expressed the fusion proteins into

    the N2a cells. The DNA fragments bound to

    FEZF2 were isolated by chromatin

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    immunoprecipitation (ChIP) with a V5 antibody

    and analyzed by q-PCR and gel electrophoresis

    following PCR. The region by which FEZF2

    activated the reporter activity was successfully

    amplified by PCR using the ChIP DNA as a

    template (Fig 7C). Consistently, the predicted

    binding fragment of FEZF2 was enriched by 3.7-

    fold when compared to the 3’UTR as assayed by

    q-PCR (Fig 7D). In contrast, V5 antibody failed

    to pull-down the Brn3b promoter region from the

    cells expressing V5-GFP (Fig 7C). The data

    suggest that FEZF2 binds to a promoter region that

    contains FEZF2 consensus-binding sites and helps

    to drive the transcription of Brn3b.

    Discussion:

    Retinal neurons start to generate from

    neuroepithelial cells in the optic cup during the

    middle gestation. Newly generated neurons exit

    the cell cycle and migrate toward the inner (vitreal)

    side of the optic cup. By E13.5, the retina begins

    to transform from a uniform sheet of

    neuroepithelial cells into two layers of prospective

    GCL and NBL. The present study examined the

    expression and function of FEZF2, a key

    transcription factor regulating the cortical

    projection neurons, in the developing retina. We

    found that a peak of transient expression of Fezf2

    mRNA occurs at E16.5 in the NBL where the

    retinal progenitors are located (Fig 1).

    Interestingly, FEZF2 protein was found in the

    GCL and colocalized with the RGC marker

    BRN3B (Fig 2). The transient expression of Fezf2

    in the migrating retinal cells may allow its protein

    to accumulate in the post-migratory neurons in

    GCL. The pattern of Fezf2 expression is spatially

    analog to that of Math5. A knock-in lacZ at Math5

    locus appeared in the retina including GCL (2),

    despite that Math5 mRNA was expressed in the

    NBL at E15.5 (11). The expression of Fezf2 at

    E16.5 supports it as a later regulator of Brn3b;

    Fezf2 may not regulate the peak formation (E11.5-

    14.5) but help the survival of RGC around E17.5

    when the maximal apoptosis occurs (5).

    The roles of Fezf2 in the developing retina

    were examined by the studies of loss of function.

    We found that Fezf2 knockout retina had a reduced

    BRN3B+ RGCs (Fig 3 and 4). To determine if this

    reduction is an effect of inhibition of Brn3b

    expression, or developmental changes leading to

    the loss of BRN3B+ RGCs, we knocked down

    Fezf2 in a small population of retinal cells with

    RNA interference by in utero electroporation (18).

    The results supported that the knockdown of Fezf2

    repressed BRN3B cell-autonomously. The

    inhibition of BRN3B was not accompanied by any

    loss of ISLET1 and BRN3A, two RGC markers

    that largely overlap with the expression of BRN3B

    (Fig 5). This observation indicates that reduction

    of BRN3B is the cause, not the result, of the

    decrease in BRN3B+ RGCs in the knockout retina.

    The BRN3B deficit increased the apoptosis of

    RGCs and reduced the optic nerve fibers (Fig 3

    and 4), as expected for its function in the

    maintenance and survival of RGCs (5,6).

    Our data revealed that Fezf2 was essential for

    the proper expression of BRN3B while it had no

    effects on BRN3A (Fig 5D and 5E), a closely

    related protein in the family of class IV POU-

    domain transcription factor, indicating a specific

    action of Fezf2 on Brn3b. A recent study found

    that the high-mobility-group domain-containing

    transcription factors SOX4 / SOX11 express in the

    developing mouse retina and function redundantly

    to regulate the generation and survival of RGCs

    (32). SOX4 and SOX11 transactivate Fezf2 by

    competing with the specific repressor SOX5 in the

    cerebral cortex (33). It is not clear whether SOX4

    and SOX11 participate in the transient activation

    of Fezf2 in the retina. However, our results are

    consistent with the observation that targeted

    disruption of SOX4 or SOX11, positive regulators

    of Fezf2 (33), caused a reduction of RGCs in

    retinas (32).

    The mechanisms responsible for the FEZF2

    regulation of Brn3b were explored in the present

    study. A 5’-regulatory region of Brn3b containing

    putative FEZF2 binding motif was enriched in the

    DNA-protein complex in the N2a cells expressing

    V5-FEZF2, but not those expressing V5-GFP (Fig

    7). This observation suggests that FEZF2 may

    bind to a tentative promoter of Brn3b. In vitro

    assay found that FEZF2 activated a reporter

    construct carrying the 5'-regulatory part of Brn3b.

    The result indicates that FEZF2 enhances the

    transcription of Brn3b by binding to the genomic

    locus of Brn3b. Notably, the Wilms’ tumor gene Wt1, which encodes a zinc-finger transcription factor,

    also activates the transcription from 5’ regulatory

    sequence of Brn3b (34). The 5’ sequence including

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    5’UTR may contain positive control elements

    driving the transcription of Brn3b. Mouse embryos with targeted disruption of Wt1 exhibit thinner

    retinas and enhanced apoptotic cell death of RGCs

    (34). This is in parallel to our observation that

    Fezf2-null retinas had increased apoptosis and

    reduced optic nerve (Fig 3 and 4). Future studies are

    needed to determine whether Fezf2 knockout leads to

    a visual deficiency in the mice.

    Although a transient expression of Fezf2 is

    required for Brn3b, the sustained expression

    completely blocked BRN3B (Fig 6). The underlying

    mechanisms responsible for the inhibition of Brn3b

    are not clear. It remains to be excluded that the

    genomic locus of Brn3b may harbor unknown regions mediating the inhibition by FEZF2. On the

    other hand, the sustained expression of Fezf2 blocked MATH5 in addition to BRN3B and ISLET1

    (Fig 6). We speculate that the Fezf2 could function

    as a repressor of Math5, and thereafter, inhibit its

    downstream targets. It is known that a targeted

    deletion of Math5 abolishes the retinal expression of

    Brn3b (2), despite that Fezf2 expresses transiently in the developing retina. Therefore, if Math5 were depressed by a sustained Fezf2, Brn3b would be

    blocked. With the inhibition of Math5, the phenotype of retinal cells may be altered by the

    ectopic expression of Fezf2, a fate-determining gene

    of dorsal telencephalic progenitors and the cortical

    projection neurons (17, 29).

    In conclusion, we have determined the

    expression and function of Fezf2 in the developing

    retina. The transient expression of Fezf2 is

    essential for the development and survival of

    BRN3B+ RGCs by regulating the transcription of

    Brn3b. This study provides novel insights into the

    molecular mechanisms underlying the RGC and

    retinal development.

    Acknowledgements

    The authors thank Yasuhide Furuta at RIKEN Center for Developmental Biology in Japan for granting the

    permission for using the Tg(Six3-cre)69Frty mouse, and Nenad Sestan at Yale University for providing

    Fezf2 floxed mouse and reagents. We would also like to thank former students in the lab, Huaping Tao,

    Yuee Zhao, Huateng Cao and Yong Li, who helped with the experiments during this study. The work was

    supported by Natural Science Foundation of China (grants: #31500850 to C Qu and #81571096 to JG

    Chen) and Zhejiang Provincial Natural Science Foundation of China (Grant NO. LQ16H120001 to C

    Qu).

    Conflict of interest

    The authors declare that they have no conflicts of interest with the contents of this article.

    Author contributions

    JGC designed the research; CQ, DB, JX and CW performed the research; CQ, DB, XL, JX, YL and TJ

    analyzed data; JGC and XL wrote the paper; XZ and JQ contributed reagents/materials.

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    Figure legends

    Figure 1, Expression of Fezf2 in the developing retina. (A), Sections of mouse retinas at the

    designated developmental stages were processed for Fezf2 ISH. Fezf2 was transiently expressed in the

    retinas with maximal expression occurring at E16.5. (B), Fezf2 was expressed in the inner NBL at E16.5.

    (C), Coronal section of the E16.5 brain showing expression of Fezf2 in the cortex (arrow) and the retina

    (arrowheads). All bars, 200 μm.

    Figure 2, Expression of FEZF2 in the developing retina. (A), FEZF2 expressions were determined in

    the retinal sections by IF at the indicated developmental stages. FEZF2 was expressed in prospective

    GCL of the retina at E16.5. (B), FEZF2 expression colocalized with BRN3B. Bar of the figure, 200μm.

    Bar in the insert: 50μm.

    Figure 3, Targeted disruption of Fezf2 leads to a reduction of BRN3B+ RGCs and an increase in

    apoptosis. (A), The Fezf2 second exon harbors two loxp sites flanking the second exon. P1, P2, and P3

    are the three genotyping primers located in the exon 1-3 of Fezf2 locus. (B), Gel electrophoresis of the

    PCR products from the genotyping. The presence of first loxp site and the absence of exon 2 were

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    determined by PCR with the primer sets of P1-P2 and P1-P3, respectively. Expression of Cre was also

    confirmed in the knockout mice by PCR (data not shown). (C), E17.5 retinas were isolated from wild-

    type and Fezf2-null mice, and the relative expressions of Brn3b and Fezf2 were measured by q-PCR. The

    knockout mice had a diminished expression of Fezf2 and Brn3b. (D), The expression of BRN3B and

    FEZF2 were measured in the isolated retinas from control and Fezf2-null retinas by Western blots with α-

    tubulin as an internal control. (E), Immunostaining of BRN3B and activated CASPASE III at E17.5 in

    control and Fezf2 knockout retinas. Knocking out Fezf2 reduced BRN3B+ cells and increased apoptotic

    cells. Bar of the figures in IF of BRN3B: 200μm and 50 μm for low and high magnitude, respectively.

    Bar of the figure in CASPASE III: 50 μm. (F), Histogram showed the numbers of BRN3B+ in GCL and

    NBL per field (40x). (G), A total of CASPASE III+ cells per section in control and Fezf2-null retinas.

    Figure 4, Reduced BRN3B+ cells and axons in Fezf2-/- mice at P7. (A), Whole mount retinas from

    wild-type and Fezf2-/- mice at P7 were examined for the expression of BRN3B. Inserts were enlarged

    images at 40x. Bar of the figure: 5000μm. Bar in the insert: 30μm. (B), A histogram shows that the

    number of BRN3B+ cells per field (40x) was significantly reduced in the knockout mice. (C), SMI32

    staining in the whole mount of retinas from wild-type and Fezf2-/- mice at P7. The knockout retina had

    weakened axonal processes as compared to the wild-type. The arrow in the Fezf2-/- retinal section points

    to an aberrant axon bifurcation. Bar of the figure: 30μm. (D), The eyes with attached optic nerves were

    dissected out. The optic nerve in the Fezf2-/- mice was thinner than the wild-type. The image was a

    representative from 4 samples (eyes).

    Figure 5, Inhibition of BRN3B expression by Fezf2-siRNA. (A), Fezf2-scRNA-1 or Fezf2-siRNA-1

    was delivered to one eyecup of E13.5 embryos (Green). Retinal sections were examined for the

    expression of MATH5, ISLET1 and BRN3B (Red) at E17.5. Similar to those expressing Fezf2-scRNA-1,

    Fezf2-siRNA-1 transfected cells was partially colocalized with MATH5 and ISLET1 (arrowheads). In

    contrast, the retinal cells expressing Fezf2-siRNA were mostly BRN3B-negative. (B), Histogram showed

    the percentages of colocalization in the Fezf2-siRNA-1 and Fezf2-scRNA-1-transfected cells. (C), Single

    cell suspensions prepared at E17.5 from the transfected retinas were sorted by FACS. The relative

    expression of Brn3b and Fezf2 was measured in GFP+ cells by q-PCR. (D), Fezf2-scRNA-2 or Fezf2-

    siRNA-2 was delivered to eyecups of E13.5 embryos (Green). Retinal sections were examined for the

    expression of BRN3A (Red) at E17.5. Arrowheads indicate colocalizations of BRN3A and the transfected

    GFP. (E), No significant difference in the percentage of colocalization between the scramble and the

    siRNA-transfected cells. Bar of the figure, 200μm. Bar in the insert: 20μm.

    Figure 6, Over-expression of Fezf2 alters phenotype of the retinal cells. (A), The retinas transfected

    with pCAGEN and Fezf2-pCAGEN were examined at E17.5 with IF. The colocalization of MATH5,

    ISLET1 and BRN3B (Red) with GFP were determined by IF. (B), Histogram showed the percentages of

    colocalization in pCAGEN and Fezf2-pCAGEN groups. Over-expression of Fezf2 abolished the

    expression of MATH5, ISLET1 and BRN3B. Bar of the figure, 200μm. Bar in the insert: 20μm.

    Figure 7, FEZF2 binds to 5’ regulatory sequence in Brn3b. (A), Schematic diagram of the genomic

    structure of Brn3b. A tentative promoter including the 5’UTR of Brn3b contains predicted FEZF2

    binding motifs (yellow bar). (B), Relative luciferase activities measured in the lysates of N2a cells. N2a

    cells stably expressing pGL4.18-Brn3b-promoter were assayed for the luciferase activities after transient

    expression of the indicated constructs for two days. Fezf2-pCAGEN increased whereas Fezf2-siRNA

    decreased the luciferase activities. (C)-(D), ChIP with an anti-V5 antibody precipitated FEZF2-bound

    DNA from the N2a cells expressing V5-tagged FEZF2, but not those expressing V5-GFP. The DNA was

    analyzed by gel electrophoresis (C) of the PCR products for the presence of the tentative promoter and

    measured by q-PCR (D) for the enrichment of the binding sequence. The input of ChIP and the pull-

    down without V5 antibody were taken as a positive and a negative control of the PCR, respectively. The

    control sequence for the q-PCR in Fig 7D is a region in the 3’UTR of Brn3b locus.

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    Figure 1

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    Figure 2

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  • Xiangtian Zhou, Jia Qu and Jie-Guang ChenChunsheng Qu, Dandan Bian, Xue Li, Jian Xiao, Chunping Wu, Yue Li, Tian Jiang,

    Retinal Ganglion CellsTransient Expression of Fez Family Zinc Finger 2 Regulates Brn3b in Developing

    published online February 9, 2016J. Biol. Chem.

    10.1074/jbc.M115.689448Access the most updated version of this article at doi:

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