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From -omics to phenotyping for crop improvement
Tuesday 26th-Thursday 28th, June 2018
Aula Maggiore - Via Celoria, 2 (MI)
Earth Observation systems for
operational monitoring of crop conditions
Mirco Boschetti CNR-IREA (MI)
Wednesday 27th, June 2018
Intro
Needs of efficient sensing of plants traits
From experimental to real farming condition
Imaging and remote sensing
What is the remote sensing
What can provide for agriculture monitoring
Plant spectral response
Example of application
Mapping, Monitoring and Modelling info for science and management
Spetroradiometric
UAV
satellite
Towards operational downstream service
2
PRESENTATION LAYOUT
Institute for Electromagnetic Sensing of the Environment of CNR develops methodologies and technologies for acquisition, processing, fusion and interpretation of images and data obtained by electromagnetic sensors - operating on satellite, aircraft and in situ
NRM_LAB is a multidisciplinary team working on environmental and agricultural monitoring issues
We study and develop solutions and methods to generate and provide end-user value-added information generated by the acquisition, processing and integration of multisource data
In Copernicus we are dedicated to the research for the creation of "Downstream services" prototypes, especially for the agricultural sector
An operational workflow to assess rice nutritional status based
on satellite remote sensing and smart apps
Nutini et al. 2018 (2018)Computers and Electronics in Agriculture (in press)
Downstream Services for Rice Crop Monitoring in Europe: From Regional to Local Scale Busetto et al. (2017)IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing
Early season weed mapping in rice crops using multi-spectral UAV data
Stroppiana et al. 2018 (2018)nternational Journal of Remote Sensing
ERM
ES m
on
ito
rin
gsy
stem
s
WHO ARE WE: IREA NATURAL RESOURCE MONITORING LABORATORY
INTRO:NEEDS OF EFFICIENT SENSING OF PLANTS RESPONSE TO ENVIRONMENT (G X E)
WHY REMOTE SENSING: ACQUISITION OF NON DESTRUCTIVE QUANTITATIVE INFO
Plant genomic technologies are already well developed a lack of access to plant phenotyping capabilities limits our ability to dissect the genetics of quantitative traits.
Current assessments of phenotype characteristics for disease resistance or stress in breeding programs rely largely on visual scoring by experts, which is time-consuming and can generate bias between different experts and experimental repeats.
High-throughput phenotyping platforms have recently been developed to solve this problem using variety of imaging/sensing methodologies to collect data for quantitative studies (growth, yield and adaptation to biotic or abiotic stress - disease, insects, drought and salinity).
5Lei Li, Qin Zhang and Danfeng Huang (2014) A Review of Imaging Techniques for Plant Phenotyping Sensors 2014, 14, 20078-20111; doi:10.3390/s141120078
IMAGING PLANTS IS MORE THAN JUST ‘TAKING PICTURES’.
The aim of imaging is to measure a phenotype quantitatively through the interaction between light and plants such as reflected photons, absorbed photons, or transmitted photons.
Each component of plant cells and tissues has wavelength-specific absorbance, reflectance, and transmittance properties.
chlorophyll absorbs photons primarily in the blue and red spectral region
water has its primary absorption features in the near and short wavelengths
cellulose absorbs photons in a broad region between 2200 and 2500 nm.
6Noah Fahlgren, Malia Agehan, Ivan Baxter (2015) Lights, camera, action: high-throughput plant phenotyping is ready for a close-up. Current Opinion in Plant Biology 2015, 24:93–99
FROM G X E TO G X E X M
Furthermore, the environmental plasticity of plants creates an interesting interdisciplinary modeling challenge for plant scientists, computer scientists, and statisticians, and resulting models have the potential to guide adjustments in agricultural practices to optimize yield prior to genetic improvements. G X E X M
7Lei Li, Qin Zhang and Danfeng Huang (2014) A Review of Imaging Techniques for Plant Phenotyping Sensors 2014, 14, 20078-20111; doi:10.3390/s141120078
Such monitoring tools are fundamental for breeders and to support phenotyping studies G x E
BASIS OF REMOTE SENSING AND EARTH OBSERVATION
REMOTE SENSING CATEGORICAL & QUANTITATIVE INFORMATION
CROP MONITORING QUESTIONS
Estimates a variable
categorical: which are the crops in the area?
quantitative: how much is the LAI ?
Assess the spatial variation
How much the LAI is varying in the field?
Where are the hot spot anomalous areas?
Quantify the temporal variation
Which is the temporal trend of LAI?
RS: an instrument for research and land management
REMOTE SENSING
RS is a science of obtaining information about an object, area, or phenomenon through the analysis of data acquired by a device that is not in contact with the object, area, or phenomenon under investigation
RS is the non-contact recording of information from the UV, VIS, NIR, MW of the EM spectrum by means of instruments such as cameras, scanners, lasers, linear arrays, and/or area arrays located on platforms such as aircraft or spacecraft, and the analysis of acquired information by means of visual and digital image processing
Energy and material interaction
REMOTE SENSING PRINCIPLE
RS measure measure electromagnetic energy reaching the sensor after the interaction with a surface
Source
Pixel fligth heigth(sensorcharacteristcs)
Different surfaces provide peculiarresponce with the EM reflecting, absorbing and emitting in a different way at differentwavelength
ESA Living Planet Symposium, Prague 2016
REMOTE SENSING: PASSIVE AND ACTIVE SENSORS
ESA Living Planet Symposium, Prague 2016
1840 - Hot air balloon with camera
1909 - Pigeon, light cameras (70 g)
1943 - German missiles V2
1957 - Sputnik spacecraft
1960 - First meteorological satellites
1972 - First Earth-sensing satellite (Landsat)
1980 - Specialized Sensors: Coastal Zone Color Scanner (CZCS), Heat
Capacity Mapping Mission (HCMM), and Advanced Very High Resolution
Radiometers (AVHRR)
1999 - Launch of Ikonos, the first high-resolution commercial satellite
REMOTE SENSING: HISTORY
DRONE AGE
INTERNATIONAL FRAMEWORK
Many opportunities exist for territorial monitoring with Earth Observationsystems in terms of available sensors and international interventions tocoordinate spatial policies
Group on Earth Observations (GEO) coordina la costituzione del Global Earth Observation System of Systems (GEOSS).
Two SAR sensors, 20m, every6 days
Two optical sensors, 10/20m, every 5 days
Optical sensor, 300m, every day
Operational and free of charge
EUROPEAN AND ITALIAN CONTEXT
REMOTE SENSING MEASUREMENTS:
PLANT SPECTRAL RESPONSE
SPECTRAL RESPONSE OF SURFACES
It is possible to discriminate in an image a large number of elements (soil,
vegetation, water, etc.) and to recognize their characteristics (humidity,
state of health, nutrient concentration, etc.) by analyzing the different spectral behavior in the various lengths of wave or their spectral signature
VEGETATION SPECTRAL RESPONSE
Spectral behavior of vegetation depends mainly on two
factors:
the chemical / physical characteristics of the leaves and
other components of the plant
• Chlorophyll content
• Cellular structure
• Water content
the aggregation of the individual elements (leaves,
branches) and the overall structure of the plant (canopy)
• Degree of coverage
• Amount of green biomass
• Architecture of the foliage
• Presence and type of background (soil and weeds)
• phenology
• Health state
• External factors (morphology, source-object-sensor geometry, atmosphere ...)
M.A
. G
om
ara
sca
, 1998
•foliar pigments absorb in the wavelengths of blue and red and reflect in those of the green and it is precisely for this reason that our eyes identify the vegetation of
this color
•structure of the vegetation instead implies that this reflects highly in the near infrared, determining a typical platò in the signature
VEGETATION SPECTRAL RESPONSE
•graph shows the trend of spectral signatures of vegetation as the chlorophyll content changes
Riflettanza in funzione di Cab
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Leaf chemestry
The signatures are the results of the model (PROSPECT) of the leaf's behavior
VEGETATION SPECTRAL RESPONSE
•The graph shows the trend of the spectral signatures of vegetation as the water content changes
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The signatures are the results of the model (PROSPECT) of the leaf's behavior
Leaf chemestry
VEGETATION SPECTRAL RESPONSE
Riflettanza in funzione di LAI
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VEGETATION SPECTRAL RESPONSE
The signatures are the results of the model (SAIL) of the Canopy behavior
•graph shows the trend of vegetationspectral signatures of as a function of LAI
Plant structure
•graph shows the trend of vegetationspectral signatures of as a function of leaf angles
Plant structure
l
Riflettanza in funzione di MTA
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The signatures are the results of the model (SAIL) of the Canopy behavior M.
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VEGETATION SPECTRAL RESPONSE
VEGETATION SPECTRAL RESPONSE: TEMPORAL DYNAMICS
From the study of the spectral behavior of vegetation a series of
quantitative relationships have been defined between remote sensing
data and vegetation parameters through indices based on the
relationship between the typical absorption and reflection bands
These algebraic relationships are referred to as vegetation indices (VI)
and are based above all on the red and near IR wavelengths (wide or
narrow band)
The VIs are related to the amount of plant biomass, LAI, chlorophyll
concentration, water content etc. and give indications on the state of
health, on crop productivity, on density and coverage and on nutritional
status etc.
VEGETATION INDICES
VEGETATION INDICES
VEGETATION INDEX: BAND COMBINATION
NDVI (Normalized Difference Vegetation Index)
A good index has to emphasise the property under investigation minimising the influence from other factors
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400 500 600 700 800 900 1000
Wavelength
Ref
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*.0.2
*.1.2
*.2.2
RED
NIR
VEGETATION INDEX: NDVI CONCEPT
4.42
4.19
4.24
4.25
4.34
4.64
4.64
4.34
4.35
5.13
5.18
5.88
1495180 1495200 1495220 1495240 1495260 1495280 1495300 1495320
5018960
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LAI maps from field measurements (1° of July)
VI maps from MIVIS sensor (2° of July)
VEGETATION INDEX: NDVI MAPS VS LAI
NDVI = 0.15Ln(x) + 0.69
R2 = 0.830.0
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ND
VI
a
WDRVI = 0.29Ln(x) + 0.13
R2 = 0.85
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WD
RV
I
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y = 0.15Ln(x) + 0.44
R2 = 0.80
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SR
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y = 0.07Ln(x) + 0.21
R2 = 0.66
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f
REMOTE SENSING OF AGRICULTURE
By the late 1960s, the first unmanned satellite specifically dedicated to multispectral remote sensing entered the planning stages. NASA carefully designed and constructed, then launched on July 23, 1972 ERTS-1 (Earth Resources Technology Satellite) later renamed Landsat 1.
Since 1974 the LACIE (Large Area
Crop Inventory Experiment) project aimed to provide information on agri-production (USSR)
EARTH OBSERVATION STARTED WITH AGRO-MONITORING
The first satellite image of Lombardy acquired by Landsat 1
the 14th of August 1972, 22 days after the launch
CNR-IREA archive
The first satellite sentinel 2 satellite image acquired the 29th of
June 2015 on the Po Valley, Italy, 6 days after the launch
Copernicus data (2015)/ESA
EARTH OBSERVATION: CONTRIBUTION TO CROP MONITORING
dimensione spaziale dei fenomeni
Visione multispettrale dell’oggetto indagato
Analisi e un monitoraggio multitemporale
Visione sinottica dall’alto del territorio
1000 m
250 m
30 m
> 5 m
< 0.5 m
EARTH OBSERVATION: CONTRIBUTION TO CROP MONITORING
Tipologia delle colture
Date di semina e lavorazioni
23 May
5 June
Variabilità dei suoli
Stato della coltura (vigore/anomalie)
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7 July
Multi-temporale Multi-sensore
Stato della coltura (stress idrico)
T °C7 July
Sviluppo della coltura
APPLICATION DOMAIN
REMOTELY SENSED CROP PARAMETERS
28/08/2018 37
• Leaf Pigments
• Nitrogen content
• Canopy structural parameters
• Phenology
• Anomaly detection
FIELD: SPECTRO RADIOMETRIC MEASUREMENTS
FE
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0 kg/ha
90 kg/ha
180 kg/ha
270 kg/ha
O
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Chl a+b Fc FS-canopy FS-probe
Fila : 12-24-36-60Metr i: 5-10-15
Fila : 18-36-54M e t r i : 1 0
Fila : 18-36-44Met ri : 5 -15
Fila : 36Metri: 10
AISA RGB-FC
A B C D E F
Disegno speriementale
LEAF AND CANOPY MEASUREMENTS: CLOROPHYLL DETECTION
Experimental design: sugar beet
Variabilità controllata generata a seguito di fertilizzazioni differenziate:
4 livelli N (0-90-180-270 kg/ha) randomizzati
2 livelli irrigui (blocchi E, F)
3 repliche
tot 24 parcelle 0.06 ha
Densità semina bietola: interfile di 45 cm, 60 file per parcella
LEAF MEASUREMENTS: CLOROPHYLL DETECTION
Sugar beet (Measuremements acquisition 27/05/05)
ASD_ FS-PRO (Leaf)
Fila : 36
Metri: 10 Tot. 24
Campionamenti di rondellefogliari di 18mm diametro in corrispondenza delle misureper estrazione analitica di Chla+b
Conctact probe accoppiato a FS3 misure spettrali per ogni foglia
LEAF MEASUREMENTS: CLOROPHYLL DETECTION
Leaf spectral responce
Examples of spectral signatures acquired with the contact probe on plants of different levels of fertilization.Effects in the visible region.
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REP
LEAF MEASUREMENTS: RESULTS
Leaf VIs vs Chl a+b
y = 0.00x + 0.05
R2 = 0.69
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VI
NDI
y = 1.49e-0.04x
R2 = 0.69
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VI
MCARI
y = 0.60x + 692.68
R2 = 0.74
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VI
REP
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R2 = 0.64
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VI
REP_LAGR
SR NDVI R1 R2 R3 TVI
Chl a+b 0 0 0.49 0.55 0.63 0.21
MTVI2 MCARI TCARI REIP_lagr REIP_lin -
Chl a+b 0.32 0.61 0.64 0.68 0.74 -
Leaf
ns ns
y = 0.06x + 1.39
R2 = 0.62
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VI
750/700
y = -0.18x + 36.09
R2 = 0.20
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VI
TVI
CANOPY LEVEL: DATA ACQUISITION
Misure radiometriche: 27/05/05 (sorvolo AISA)
ASD-FS-PRO (Canopy)
Fila : 18-36-44
Metri: 10 Tot. 144
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CANOPY LEVEL: DATA ACQUISITION
Canopy VIs vs Chl-a+b
Canopy
SR NDVI R1 R2 R3 TVI MTVI2
Chl a+b 0.62 0.69 0.56 0.65 0.66 0.65 0.67
FC 0.80 0.84 0.6 0.70 0.70 0.62 0.63
MTVI2 MCARI TCARI REIP_lin OSAVI TSAVI TCARI/OSAVI
Chl a+b 0.67 0.60 0.6 0.64 0.66 0.64 0.35
FC 0.63 0.46 0.46 0.88 0.72 0.73 0.26
CHL FC
FN1 32.93 64.62
FL3 34.94 83.64
FM4 32.41 54.56
FO5 27.02 35.99
•R2 indici di vegetazione
Examples of spectral signatures on plants of different levels of fertilization.Major effects in the REP and NIR region.Significant contribution of the soil
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Chl 41 mg/cm2
Fc = 28%
Fc = 78%
MCARI > MCARI MCARI < MCARI
LEAF VS CANOPY LEVEL: COMPLEXITY OF DATA ACQUISITION
CANOPY MEASUREMENTS: NITROGEN ESTIMATION
46
Experiment:
• Two vaieties (Gladio, Volano)
• Tree fertilization level two time of
application (0, 80, 160 kg ha-1)
Agronomic parameters
• LAI (transect LAI2000)
• AGB (samples on 20 plants)
• PNC (samples on 6 plants)
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l [nm]
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eJun 16
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Jul 07
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Spectral
measumrements•FieldSpec FR Pro, (ASD)
• 1nm, 4nm, 350-2500 nm
• Five acquisitions per plot
Experiments was aimed to generate plant growing condition with divergent PNC
and Biomass trend to be investigated by spectral measurementsFertlization: N0
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a)
Fertlization: N2
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date*Tesi ; LS Means
Current effect: F(5, 35)=8.4386, p=.00003
Effective hypothesis decomposition
Vertical bars denote 0.95 confidence intervals
Tesi
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Tesi
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6/17/04 6/25/04 7/1/04 7/9/04 7/22/04 7/28/04
date
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2
3
4
5
6
7
8
9
Bio
[t/
ha
]
***
***
date* Tesi; LS Means
Current effect: F(5, 35)=2.3444, p=.06163
Effective hypothesis decomposition
Vertical bars denote 0.95 confidence intervals
Tesi
0
Tesi
2
6/17/04 6/25/04 7/1/04 7/9/04 7/22/04 7/28/04
date
0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
4.0
N (
%)
*** ***
**
1° fert 22 jun 2° fert 20 Jul.
CANOPY MEASUREMENTS: NITROGEN ESTIMATION
NDI (Normalises Difference Index) iperspectral for N estimates
(r2=0.0) (r2
=1.0)
a) b) c)
(r2=0.0) (r2
=1.0)
a) b) c)
PNC: Optimal combinations fall in the VIS (l<700 nm) in the blue-green region where the
photosynthetic pigments have a strong influence. Best NDI l2= 503, l1= 483 (R2=0.65,
***p<0.001)
AGB: High correlation in the VISNIR. Best NDI l1~800nm and l2~600nm. (R2> 0.7;)
λ2=
503 n
m
λ1=483 nm
Band
selection
PNC AGB
CANOPY MEASUREMENTS: NITROGEN ESTIMATION
NDI vs other indices proposed in literature
y = -0.27ln(x) + 0.903R² = 0.219
0.000
0.200
0.400
0.600
0.800
1.000
1.200
0 0.5 1 1.5 2 2.5 3 3.5
ND
VI(
80
0/6
70
)
PNC %
T0
T2
y = -14.0ln(x) + 726.4R² = 0.165
670.000
680.000
690.000
700.000
710.000
720.000
730.000
740.000
0 0.5 1 1.5 2 2.5 3 3.5
lR
EP
PNC %
T0
T2
y = -1.32ln(x) + 3.592R² = 0.265
0.000
0.500
1.000
1.500
2.000
2.500
3.000
3.500
4.000
4.500
5.000
0 0.5 1 1.5 2 2.5 3 3.5
R1
(70
0/6
70
)
PNC %
T0
T2
y = -0.06ln(x) + 0.146R² = 0.330
0.000
0.050
0.100
0.150
0.200
0.250
0 0.5 1 1.5 2 2.5 3 3.5
MC
AR
I
PNC %
T0
T2
y = -4.69ln(x) + 15.89R² = 0.112
0.000
5.000
10.000
15.000
20.000
25.000
0 0.5 1 1.5 2 2.5 3 3.5
TVI
PNC %
T0
T2
y = -0.05ln(x) + 0.149R² = 0.65
0.000
0.020
0.040
0.060
0.080
0.100
0.120
0.140
0.160
0.180
0.200
0 0.5 1 1.5 2 2.5 3 3.5
ND
I
PNC %
T0
T2
CANOPY MEASUREMENTS: NITROGEN ESTIMATION
CANOPY MEASUREMENTS: NITROGEN ESTIMATION
28/08/2018 50
FROM SPECTRA TO IMAGES
AERIAL: UAV MAPPING
Satellite UAVSatellite UAVSatellite UAV
Very high
spatial resolution
Multi-spectralinformation
Satellite UAVSatellite UAV
Very high
spatial resolution
Mission flexibility
Multi-spectralinformation
Large area coverage
Satellite UAVSatellite UAV
Very high
spatial resolution
Mission flexibility
Less atmospheric and cloud contamination
Time data acquisitionto delivery
Multi-spectralinformation
Large area coverage
Longer history
Data archives
Cost
cost vs spatial resolution
SATELLITE VS. UAV
Measurements• Crop Rice volano• N -> Destructive, Dualex, PocketN• LAI -> PocketLAI• Reflectance -> Spectroradiometer SR3500
(15/07/14)• UAV acquisition (September 24th, 2014) DJI
S1000 Octocopter & Tetracam ADC Micro
UAV – CROP DEVELOPMENT VS N APPLICATION (RICE)
IDParcella
Kg N/ha04/06/14
Kg N/ha15/07/14
N1.1 20 0
N1.2 20 0
N1.3 20 0
N1.4 20 0
N1.5 20 20
N1.6 20 20
N1.7 20 40
N1.8 20 40
IDParcella
Kg N/ha04/06/14
Kg N/ha15/07/14
N2.1 40 0
N2.2 40 0
N2.3 40 0
N2.4 40 0
N2.5 40 20
N2.6 40 20
N2.7 40 40
N2.8 40 40
IDParcella
Kg N/ha04/06/14
Kg N/ha15/07/14
N3.1 60 0
N3.2 60 0
N3.3 60 0
N3.4 60 0
N3.5 60 20
N3.6 60 20
N3.7 60 40
N3.8 60 40
UAV – CROP DEVELOPMENT VS N APPLICATION (RICE)
28/08/2018 55
Rice
UAV – WEED DETECTION (RICE)
DJI S1000 Octocopter Digital Camera Canon S100 Tetracam ADC Micro
Mutispectral data DSM
UAV – WEED DETECTION (RICE)
28/08/2018 57
Weed proportion Fractional Cover Canopy heigth
UAV: DAMAGE ASSESSMENT (RICE)
58
0 10m
0 10m
0 10m
Riso Centauro
Riso CL26
data 10 agosto 2017
Two experimental fields inVillarasca (PV). (Acqua e Sole S.r.l)
LEGENDA
I RISO CL 26
J RISO CENTAURO
A ACCESTIMENTO
L LEVATA
F FIORITURA
CORRIDOIO
C1, C2, C3, C4 DEFOGLIAZIONE 0%
100 1, 100 2 DEFOGLIAZIONE 100%
50 1, 50 2 DEFOGLIAZIONE 50 %
UAV: DAMAGE ASSESSMENT
VI calculation and damage assessment
59
testimone
Damage
@ steam elongationDamage @Flowering control
sorgente MSAVI RBIAS
0 10m 0 10m 0 10m
Significant relations
between processing of
remote sensing data
and SAPR (ANOVA):
• % defoliation
• Variety
• Phenological Phase
0% 50% 100%
SATELLITE: HIGH RESOLUTION MAPPING
SATELLITE DATA: WITHIN FIELD ANOMALY
28/08/2018 61
Blast disease
Fertilisation plot
Nutritional deficiency
Seed density test
SATELLITE DATA: YIELD VARIABILITY ASSESSMENT
Analysis of satellite images acquired in key phenological phases revelaed significant relation with final yield data measured by a harvester combiner
62
ResaN
dR
E
Resa
Nd
RE
Yield maps
16 Luglio 2014 17 Agosto 2014
VI maps
Ottobre 2014
LAI sampling and foliar nitrogen 'driven' by the 1st satellite image acquiresd
28th June 2015
10/09/2015 Open Day Ente Risi
SATELITE DATA TO SUPPORT SMART SCOUTING
1° July 2015
Biomassindicator
RGB 1 RGB 2 Colori reali
Nitrogen contentindicator
NDVI (Normalised Different Vegetation Index)
CVI (Chlorophyll Vegetation Index)
SATELLITE DATA TO NITROGEN NUTRIZION INDEX (NNI )
NITROGEN NUTRITIONAL INDEX
An operational workflow to assess rice nutritional status based on satellite imagery and smartphone apps
Francesco Nutini a*, Roberto Confalonieri b, Alberto Crema a, Ermes Movedi b, Livia Palearib, Dimitris Stavrakoudis c and Mirco Boschetti a*
Smart Scouting EO data analysis Maps generation
<= 0.7 0.7 - 0.9 0.9 – 1.1 ESU1.1 – 1.3 >= 1.3Cluster a Cluster b Cluster c ESU
PocketLAI
PocketN
Ncrit=
Dilution curve
LAI map
PNC map
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
PROJECT SATURNO: SUPPORTING VRT FERTILIZATION
28/08/2018 72
SATELLITE: MODERATE RESOLUTION MONITORING
SATELLITE: CROP PHENOLOGY
SATELLITE: PHENOLOGICAL ANALYSIS FROM TIME SERIES
Today
SPOT5-VGT
TERRA-MODISAQUA-MODIS
PROBA-V
1998 2014
SPOT4- VGT1999 2002 2016
300 m 500 m
1000 m
VIS-NIR
SWIR
TIR
250 m 333 m1000 m
500 m 333 m1000 m
1000 m
SpectraIIndices Vegetation growth: NDVI, EVI, etc.- Moisture/water condition: NDWI, NDFI, etc.
EXISTING DATA AVAILABLE: OPERATIONAL SATELLITE SYSTEMS
SENTINEL 3
Daily
Composite SPOT-VGT MODIS PROBA-V Sentinel-3
TIME SERIES ANALYSIS
Treat the signal of a vegetation image image stack to estimate information on plant dynamics
Parameter: (a) beginning of season, (b) end of season, (c) length of season, (d) base value, (e) time of middle of season, (f) maximum value, (g) amplitude, (h) small integrated value, (h+i) large integrated value.
Processing steps: a) Dowload dati, b) pre-processamento, c) calcolo NDVI, d) smoothing del segnale, e) interpolazione giornaliera
a b cd
e
Informazioni sintentiche sulla variabilità spaziale e inter-annuale delle pratiche agricole
MODIS (S2/S3 in future)
CROP MONITORING: SOWING PERIOD AND PHENOLOGY
Informazioni sintentiche sulla variabilità spaziale e inter-annuale delle pratiche agricole
CROP MONITORING: SOWING PERIOD AND PHENOLOGY
Problems for mixed pixel
Very good results when crops entirely cover pixe
Criticalities for field level monitoring
Near real time (NRT) crop monitoring at parcel scale
DOI
LAI
Sowing method DVS
Date
Field measurements
EO retrival
Dry
Water
LAI
Uncertainty
RICE PHENOLOGICAL STAGE OCCURENCE ESTIMATES AT PARCEL LEVEL
Mirco Boschetti; Lorenzo Busetto, Luigi Ranghetti; Francisco Javier García-Haro; Manuel Campos-Taberner; Roberto Confalonieri; TESTING MULTI-SENSORS TIME SERIES OF LAI ESTIMATES TO MONITOR RICE PHENOLOGY: PRELIMINARY RESULTS – IGARSS 2018
A Copernicus services Concept
84
Crop identification
Crop phenology LAI Biotic Risk
Rainfall Maximum humidity
Max Temperature Radiation
COPERNICUS LAI (GEOV1)
WARM MODEL
RRS CROP MONITORING PLATFORM (HTTP://ERMES.DLSI.UJI.ES/PROTOTYPE/GEOPORTAL/LOGIN.HTML)
RRS FROM DATA TO BULLETTINS
LRS: CROP MANAGEMENT PLATFORM (HTTP://ERMES.DLSI.UJI.ES/PROTOTYPE/GEOPORTAL/LOGIN.HTML)
86
Constant Pattern map
Early season fieldhomogenetySAR data (CSK/S1)
Seasonal Pattern mapsOptical data (RE)
Phenological stages Biotic Risk