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Discovery and Activity of STRO-002, a Novel ADC Targeting Folate Receptor Alpha for Ovarian and Endometrial Cancer Xiaofan Li, Cristina Abrahams, Sihong Zhou, Stellanie Krimm, Robert Henningsen, Heather Stephenson, Jeffrey Hanson, Mary Rose Masikat, Krishna Bajjuri, Tyler Heibeck, Cuong Tran, Gang Yin, James Zawada, Ganapathy Sarma, Joy Chen, Maureen Bruhns, Willy Solis, Alexander Steiner, Adam Galan, Toni Kline, Ryan Stafford, Alice Yam, Venita I. De Almeida, Mark Lupher, Jr., Trevor Hallam. Sutro Biopharma, South San Francisco, CA, USA Sutro’s proprietary XpressCF+ TM cell-free expression system includes: incorporation of pAMF, that enables site-specific conjugation, an orthogonal tRNA synthetase which enables high fidelity pAMF incorporation, engineered XpressCF+ TM extracts that utilize an engineered, attenuated RF-1 which enables: a. Efficient and multiple insertion points of pAMF in the same translation product b. Precise DAR ranging from 1-8 in a single molecular species ADC c. ADC production in a few days allowing for rapid iterative structure-activity optimization Generation of STRO-002, A Homogenous FolRa-Targeting ADC Through Cell-Free Antibody Synthesis And Site-Specific Conjugation Selection of Optimum Drug-Linker and DAR ADC with a Cleavable Drug-Linker at DAR 4 Showed Best Activity Selection of Top Antibodies H01 and B10 FolRα Antibodies Exhibited Best Activity in FolRα Expressing Models Selection of Optimal Linker Val-Cit Linker Confered Better Efficacy Than a Val-Ala Linker Structure of STRO-002 Selection of Optimum Conjugation Sites Conjugation at Sites Y180/F404 or Y180/K42 Showed Best In Vivo Activity Selection of Final ADC Format FolRα antibody H01 Conjugated at Y180 and F404 Induced Significant Growth Inhibition of Igrov-1 Tumors FolRα ADC variants with different tubulin based drug-linkers, a non-cleavable maytansinoid drug-linker (SC236) or a cleavable 2-aminophenyl hemiasterlin drug-linker (SC239), conjugated to FolRα B10 antibody at DAR = 2, 4, or 6, using the Y180, F404 and/or K42 sites were compared. SC239 conjugates exhibited better cytotoxic activity on Igrov1 cells which have lower, but clinically relevant expression levels of FolRα. SC239 was therefore selected as the drug-linker for this ADC. A conjugate with a DAR of 4 was selected since a DAR of 6 did not provide much higher cytotoxicity than the DAR 4 version. FolRα ADC variants with different FolRα antibodies (engineered and isolated from Fab ribosome display) conjugated to SC239 at positions Y180 and F404 were compared. All variants had comparable in vitro cell killing on high expressing FolRα positive KB cells. In response to a single 2.5 mg/kg dose, ADC variants with H01 and B10 FolRα antibodies showed significant in vivo activity in the KB xenograft model. FolRα ADC variants composed of B10 FolRα antibody conjugated to SC239 at the following site pairs Y180/K42, Y180/ F404 or F404/K42 were compared. All variants had comparable in vitro cell killing activity on KB cells. In response to a single dose at 2.5 mg/ kg, ADC variants with SC239 conjugated at Y180/K42 or Y180/F404 demonstrated better in vivo activity in the KB xenograft model than the ADC conjugated at F404/K42. Cell Killing Activity of STRO-002 Is Highly Specific for FolRa Expressing Cells Summary In vitro Cell Killing in KB Cells 0.001 0.01 0.1 1 10 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) B10-Y180/F404-SC239 A07-Y180/F404-SC239 B04-Y180/F404-SC239 H01-Y180/F404-SC239 0 5 10 15 20 25 30 0 500 1000 1500 Days post treatment Tumor size (mm 3 ) Vehicle B10 Ab A07 Ab B04 Ab H01 Ab In Vivo Activity in KB Tumors **** **** ns ns In vitro Cell Killing in KB Cells 0.001 0.01 0.1 1 10 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) aGFP -Y180/F404 Y180/F404 K42/F404 K42/Y180 0 5 10 15 20 25 0 500 1000 1500 Days post treatment Tumor size (mm 3 ) Vehicle GFP-Y180/K42 Y180/K42 Y180/F404 F404/K42 In Vivo Activity in KB Tumors **** **** ** In vitro Cell Killing in Igrov1 Cells 0.001 0.01 0.1 1 10 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) B10-Y180/F404-SC239 B10-Y180/K42-SC239 H01-Y180/F404-SC239 H01 Y180/K42-SC239 0 5 10 15 20 25 30 0 400 800 1200 1600 Days post treatment Tumor size (mm 3 ) In Vivo Activity in Igrov-1 Tumors Vehicle B10-Y180/F404 B10-Y180/K42 H01-Y180/F404 H01-Y180/K42 ns ns ns * FolRα ADC variants composed of B10 or H01 FolRα antibodies conjugated to SC239 linker warhead at Y180/K42 or Y180/F404 were compared. H01-Y180/F404 showed best in vitro cytotoxic activity and in vivo tumor growth inhibition in the Igrov-1 model following a single dose at 2.5 mg/kg. • STRO-002 showed potent activity in a cell killing assay on FolRα positive Igrov-1 and OVSAHO cells, but no effect on FolRα negative A549 cells. • Cytotoxic activity of STRO-002 was specific for cells expressing FolRα; and was competed with excess SP8166 (H01). anti-FolRα antibodies isolated using Fab-based ribosome display were optimized for - Linker and warhead attributes - Antibody moiety - Drug antibody ratio - Site pairs for drug-linker attachment Folate receptor alpha (FolRa) is a cell-surface protein overexpressed in ovarian and endometrial cancer. FolRa expression is highly restricted on normal tissues, making it a promising target for cancer therapy using antibody drug conjugates (ADCs). We have used a platform based on Sutro’s proprietary XpressCF+ TM cell-free expression system and site specific conjugation to design a novel, FolRa-targeting ADC, STRO-002. STRO-002 contains the anti-FolRa human IgG1 antibody SP8166 (H01) conjugated to a novel proprietary cleavable drug-linker (SC239) at specific sites Y180 and F404 on the antibody heavy chain. SP8166 (H01) was discovered and optimized using a Fab ribosome display selection and has four non- natural amino acid, p-azido-phenylalanine (pAMF) residues incorporated at positions Y180 and F404 on each heavy chain. SC239 is composed of a tubulin-targeting 3-aminophenyl hemiasterlin warhead, SC209, and a cleavable valine citrulline p-aminobenzyl carbamate linker functionalized with dibenzocyclooctyne (DBCO). The rapid and selective reaction of DBCO on SC239 and pAMF residues in SP8166 results in a well-defined, homogeneous ADC with a drug-antibody ratio (DAR) of ~4. We have leveraged Sutro’s XpressCF+ TM cell-free technology for rapid interrogation and optimization of parameters for a FolRα targeting ADC, including choice of antibody, conjugation sites, DAR, and linker warhead. • In vitro and in vivo assessment showed that FolRα ADC composed of antibody H01 conjugated to SC239 at positions Y180 and F404, designated STRO-002, demonstrated the best anti tumor activity in FolRα expressing models, and was selected as the lead antibody for the program. STRO-002 demonstrated good pharmacokinetic and pharmacological properties including specificity, stability and safety in cynomolgus monkeys (not shown here), thus making it an ideal candidate for clinical development. IND-enabling studies supporting STRO-002 as a potential treatment of FolRα expressing malignancies are on- going and IND submission is planned for the second half of 2018. References • Yin, G., et al.; (2012) Aglycosylated antibodies and antibody fragments produced in a scalable in vitro transcription-translation system. mAbs 4:2, 217-225. • Zimmerman, E. S., et al.; (2014) Production of site-specific antibody−drug conjugates using optimized non-natural amino acids in a cell-free expression system. Bioconjugate Chemistry 2014, 25, 351−361. • Yin, G., et. al.; (2017) RF1 attenuation enables efficient non-natural amino acid incorporation for production of homogeneous antibody drug conjugates. Scientific Reports 7(1):3026. STRO-002 is Highly Stable In Vitro and In Vivo STRO-002 is highly stable in vitro (PBS, cynomolgus or human plasma at 50 mg/mL) and in vivo (plasma from mice treated with single dose of 5 mg/ kg), with a DAR of ~4 being retained until day 21. Minimal release of the STRO-002 catabolite, SC209, was observed after a 4-day incubation of STRO-002 in PBS, cyno or human plasma at 100 mg/mL. SC209 was accumulated in tumors, but undetectable in circulation of treated mice bearing Igrov1 tumors. STRO-002 was isolated from plasma samples by affinity pull-down and DAR measured by LC-MS. Released SC209 was quantitated by LC-MS. In Vitro SC209 Release Introduction 0 20 40 60 80 100 120 predose day 1 day 3 day 7 predose day 1 day 3 day 7 Tumor Levels (ng/g) Plasma Levels (ng/ml) SC209 Level Tumor Accumulation and SC209 Release In Vivo Igrov1 FolRa Copy # = 1,375,828 0.001 0.01 0.1 1 10 100 1000 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) OVSAHO FolRa Copy # = 842,703 0.001 0.01 0.1 1 10 100 1000 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) A549 0.001 0.01 0.1 1 10 100 1000 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) FolRa Negative In Vitro DAR Measurement In Vivo DAR Measurement 5 mg/kg 15 mg/kg 0 20 40 60 80 Delay to Reach 300 mm 3 (days) Igrov-1 Tumor Growth Delay SC239 SC346 **** **** 0 10 20 30 40 50 60 70 80 0 500 1000 1500 2000 Days post treatment Tumor size (mm 3 ) Igrov-1 Tumor Growth Vehicle 5 mg/kg SC239 15 mg/kg SC239 5 mg/kg SC346 15 mg/kg SC346 0 5 10 15 20 25 1 10 100 1000 Days plasma concentration (ug/ml) SC239 SC346 Pharmacokinetic Profile In vitro Cell Killing in Igrov1 Cells 0.001 0.01 0.1 1 10 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) H01 Y180/F404 SC239 H01 Y180/F404 SC346 Linker Warhead T1/2 (Days) Clearance (mL/day/kg) SC239 6.4 9.6 SC346 5.5 8.6 0.01 1 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) 0.01 1 100 10000 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) 0.01 1 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) A549 (FolR1 -) Igrov (FolR1 ++) KB (FolR1 +++) Non-Cleavable Maytansinoid (SC236) 0.01 1 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) 0.01 1 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) 0.01 1 100 0 20 40 60 80 100 120 nM Relative Cell Viability (Cellular ATP content, % of control) A549 (FolR1 -) Igrov1 (FolR1 ++) KB (FolR1 +++) Cleavable 2-Aminophenyl Hemiasterlin (SC239) DAR = 2 DAR = 4 DAR = 6 Cyno plasma Cyno plasma FolRα ADC variants composed of the H01-Y180/F404 FolRα antibody conjugated to 3-aminophenyl hemiasterlin with either a cleavable Val-Cit drug linker, or a Val-Ala drug linker, were compared. Both ADC variants showed comparable pharmacokinetic properties in mice. The SC239 conjugate showed slightly improved in vitro cell killing activity and exhibited superior in vivo efficacy than the SC346 conjugate in Igrov-1 model at a single dose of 5 and 15 mg/kg. Based on the cumulative data, H01 conjugated to SC239 at positions Y180 and F404 was selected as the lead FolRα targeting ADC, STRO-002..

Discovery and Activity of STRO-002, a Novel ADC Targeting ......GFP-Y180/K42 Y180/K42 Y180/F404 F404/K42 In Vivo Activity in KB Tumors **** **** ** In vitro Cell Killing in Igrov1

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Page 1: Discovery and Activity of STRO-002, a Novel ADC Targeting ......GFP-Y180/K42 Y180/K42 Y180/F404 F404/K42 In Vivo Activity in KB Tumors **** **** ** In vitro Cell Killing in Igrov1

Discovery and Activity of STRO-002, a Novel ADC Targeting Folate Receptor Alpha for Ovarian and Endometrial CancerXiaofan Li, Cristina Abrahams, Sihong Zhou, Stellanie Krimm, Robert Henningsen, Heather Stephenson, Jeffrey Hanson, Mary Rose Masikat, Krishna Bajjuri, Tyler Heibeck, Cuong Tran, Gang Yin, James Zawada, Ganapathy Sarma, Joy Chen, Maureen Bruhns, Willy Solis, Alexander Steiner, Adam Galan, Toni Kline, Ryan Stafford, Alice Yam, Venita I. De Almeida, Mark Lupher, Jr., Trevor Hallam. Sutro Biopharma, South San Francisco, CA, USA

Sutro’s proprietary XpressCF+TM cell-free expression system includes:• incorporationofpAMF,thatenablessite-specificconjugation,• anorthogonaltRNAsynthetasewhichenableshighfidelitypAMFincorporation,• engineeredXpressCF+TMextractsthatutilizeanengineered,attenuatedRF-1whichenables:a.EfficientandmultipleinsertionpointsofpAMFinthesametranslationproductb.PreciseDARrangingfrom1-8inasinglemolecularspeciesADCc.ADCproductioninafewdaysallowingforrapiditerativestructure-activityoptimization

Generation of STRO-002, A Homogenous FolRa-Targeting ADC Through Cell-Free Antibody Synthesis And Site-Specific Conjugation

Selection of Optimum Drug-Linker and DARADC with a Cleavable Drug-Linker at DAR 4 Showed Best Activity

Selection of Top AntibodiesH01 and B10 FolRα Antibodies Exhibited Best Activity in FolRα

Expressing Models

Selection of Optimal LinkerVal-Cit Linker Confered Better Efficacy Than a Val-Ala Linker

Structure of STRO-002Selection of Optimum Conjugation SitesConjugation at Sites Y180/F404 or Y180/K42 Showed Best In Vivo Activity

Selection of Final ADC FormatFolRα antibody H01 Conjugated at Y180 and F404 Induced Significant

Growth Inhibition of Igrov-1 Tumors• FolRαADCvariantswithdifferenttubulin

baseddrug-linkers,anon-cleavablemaytansinoiddrug-linker(SC236)oracleavable2-aminophenylhemiasterlindrug-linker(SC239),conjugatedtoFolRαB10antibodyatDAR=2,4,or6,usingtheY180,F404and/orK42siteswerecompared.

• SC239conjugatesexhibitedbettercytotoxicactivityonIgrov1cellswhichhavelower,butclinicallyrelevantexpressionlevelsofFolRα.

• SC239wasthereforeselectedasthedrug-linkerforthisADC.

• AconjugatewithaDARof4wasselectedsinceaDARof6didnotprovidemuchhighercytotoxicitythantheDAR4version.

• FolRαADCvariantswithdifferentFolRαantibodies(engineeredandisolatedfromFabribosomedisplay)conjugatedtoSC239atpositionsY180andF404werecompared.

• Allvariantshadcomparablein vitro cell killingonhighexpressingFolRαpositiveKBcells.

• Inresponsetoasingle2.5mg/kgdose,ADCvariantswithH01andB10FolRαantibodiesshowedsignificantin vivo activityintheKBxenograftmodel.

• FolRαADCvariantscomposedofB10FolRαantibodyconjugatedtoSC239atthefollowingsitepairsY180/K42,Y180/F404orF404/K42werecompared.

• AllvariantshadcomparableinvitrocellkillingactivityonKBcells.

• Inresponsetoasingledoseat2.5mg/kg,ADCvariantswithSC239conjugatedatY180/K42orY180/F404demonstratedbetter in vivoactivityintheKBxenograftmodelthantheADCconjugatedatF404/K42.

Cell Killing Activity of STRO-002 Is Highly Specific for FolRa Expressing Cells

Summary

In vitro Cell Killing in KB Cells

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• FolRαADCvariantscomposedofB10orH01FolRαantibodiesconjugatedtoSC239linkerwarheadatY180/K42orY180/F404werecompared.

• H01-Y180/F404showedbestin vitro cytotoxicactivityandin vivo tumor growthinhibitionintheIgrov-1modelfollowingasingledoseat2.5mg/kg.

•STRO-002showedpotentactivityinacellkillingassayonFolRαpositiveIgrov-1andOVSAHOcells,butnoeffectonFolRαnegativeA549cells.

•CytotoxicactivityofSTRO-002wasspecificforcellsexpressingFolRα;andwascompetedwithexcessSP8166(H01).

• anti-FolRαantibodiesisolatedusingFab-basedribosomedisplaywereoptimizedfor- Linkerandwarheadattributes- Antibody moiety - Drugantibodyratio- Sitepairsfordrug-linkerattachment

• Folatereceptoralpha(FolRa)isacell-surfaceproteinoverexpressedinovarianandendometrialcancer.• FolRaexpressionishighlyrestrictedonnormaltissues,makingitapromisingtargetforcancertherapy

usingantibodydrugconjugates(ADCs).

• WehaveusedaplatformbasedonSutro’sproprietary XpressCF+TM cell-free expression system and site specificconjugationtodesignanovel,FolRa-targetingADC,STRO-002.

• STRO-002containstheanti-FolRahumanIgG1antibodySP8166(H01)conjugatedtoanovelproprietarycleavabledrug-linker(SC239)atspecificsitesY180andF404ontheantibodyheavychain.

• SP8166(H01)wasdiscoveredandoptimizedusingaFabribosomedisplayselectionandhasfour non-naturalaminoacid,p-azido-phenylalanine(pAMF)residuesincorporatedatpositionsY180andF404oneachheavychain.

• SC239iscomposedofatubulin-targeting3-aminophenylhemiasterlinwarhead,SC209,andacleavablevalinecitrullinep-aminobenzylcarbamatelinkerfunctionalizedwithdibenzocyclooctyne(DBCO).

• TherapidandselectivereactionofDBCOonSC239andpAMFresiduesinSP8166resultsinawell-defined,homogeneousADCwithadrug-antibodyratio(DAR)of~4.

• WehaveleveragedSutro’sXpressCF+TMcell-freetechnologyforrapidinterrogationandoptimizationofparametersforaFolRαtargetingADC,includingchoiceofantibody,conjugationsites,DAR,andlinkerwarhead.

• In vitro and in vivoassessmentshowedthatFolRαADCcomposedofantibodyH01conjugatedtoSC239atpositionsY180andF404,designatedSTRO-002,demonstratedthebestantitumoractivityinFolRαexpressingmodels,andwasselectedastheleadantibodyfortheprogram.

• STRO-002demonstratedgoodpharmacokineticandpharmacologicalpropertiesincludingspecificity,stabilityandsafetyincynomolgusmonkeys(notshownhere),thusmakingitanidealcandidateforclinicaldevelopment.

• IND-enablingstudiessupportingSTRO-002asapotentialtreatmentofFolRαexpressingmalignanciesareon-goingandINDsubmissionisplannedforthesecondhalfof2018.

References•Yin,G.,etal.;(2012)Aglycosylatedantibodiesandantibodyfragmentsproducedinascalableinvitrotranscription-translationsystem.mAbs4:2,217-225.

•Zimmerman,E.S.,etal.;(2014)Productionofsite-specificantibody−drugconjugatesusingoptimizednon-naturalaminoacidsinacell-freeexpressionsystem.BioconjugateChemistry2014,25,351−361.

•Yin,G.,et.al.;(2017)RF1attenuationenablesefficientnon-naturalaminoacidincorporationforproductionofhomogeneousantibodydrugconjugates.ScientificReports7(1):3026.

STRO-002 is Highly Stable In Vitro and In Vivo

• STRO-002ishighlystablein vitro (PBS,cynomolgusorhumanplasmaat50mg/mL)andin vivo(plasmafrommicetreatedwithsingledoseof5mg/kg),withaDARof~4beingretaineduntilday21.

• MinimalreleaseoftheSTRO-002catabolite,SC209,wasobservedaftera4-dayincubationofSTRO-002inPBS,cynoorhumanplasmaat100mg/mL.

• SC209wasaccumulatedintumors,but undetectable in circulation of treatedmicebearingIgrov1tumors.

• STRO-002wasisolatedfromplasmasamplesbyaffinitypull-downandDARmeasuredbyLC-MS.ReleasedSC209wasquantitatedbyLC-MS.

In VitroSC209Release

Introduction

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Igrov1FolRa Copy # = 1,375,828

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• FolRαADCvariantscomposedoftheH01-Y180/F404FolRαantibodyconjugatedto3-aminophenylhemiasterlinwitheitheracleavableVal-Citdruglinker,oraVal-Aladruglinker,werecompared.

• BothADCvariantsshowedcomparablepharmacokineticproperties in mice.

• TheSC239conjugateshowedslightlyimprovedinvitrocellkillingactivityandexhibitedsuperiorinvivoefficacythantheSC346conjugateinIgrov-1modelatasingledoseof5and15mg/kg.

• Basedonthecumulativedata,H01conjugatedtoSC239atpositionsY180andF404wasselectedastheleadFolRαtargetingADC,STRO-002..