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Nyalia Lui, Yuan Liu,
and Bhanu Rekepalli PhD
Bioinformatics Applications &
Analysis using PoPLAR Gateway
Bioinformatics
Focus
Genomic Sequencing
DNA/RNA Strands
Protein Sequences
Problems
Unorganized Data
Abundance of Data
Data Growth
Knowledge Discovery
Explored Aspects of Bioinformatics
Genome Assembly
Sequence Analysis
Structures
Drug Discovery
Applications
• What are we
comparing?
BLAST vs
MUMMER
• What is coverage?
• BLAST vs MUMMER
• Contigs vs Nodes
Our
Focus
Develop Resources
Analytical Tools
PoPLAR Science Gateway
The life of a running task
Research Use
Provide easier access to
command line tools through
PoPLAR Gateway.
Educate Biologists on
accessing HPC
resources for large scale
data analysis.
Future Work
Thank
You
• Questions?
Acknowledgements