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BGI Newsletter Subscribe / Unsubscribe News from BGI Spotlights in Genomics Research Highlight Picks of BGI-Tech Contact BGI Newsleer Tel: +86 755 25283805 Email: [email protected] This E-mail was sent from BGI, If you do not wish to receive such communicaon, please click here to unsubscribe. April 2013 Volume 3 Issue 4 Spotlights in Genomics / News from BGI / Research Highlight / Picks of BGI-Tech www.genomics.cn BGI Europe Collaborates with GENNET on Genec Screening for Mendelian Disorders BGI Europe and GENNET, a center for genecs, fetal medicine and assisted reproducon, signed a Memorandum of Understanding (MOU) on genec screening for Mendelian disorders. This partnership aims to encourage collaborave iniaves in the area of monogenic disease. More BGI Tech Develops Novel "Ultra-Deep de novo" Assembly Soluon for Heterozygous Genomes BGI Tech Soluons Co., Ltd., also referred to as "BGI Tech", introduced its novel assembly soluon for facilitang heterozygous genomes research. This marks another technological breakthrough for BGI in heterozygous genome assembly aſter the completed genome sequencing of oyster, diamondback moth and pear. More BGI and TGAC join efforts to tackle global challenges in food security, energy and health The Genome Analysis Centre (TGAC) and BGI will be working together aiming to strengthen research collaboraons and build on the world-class genomics and bioinformacs capabilies of both instuons. This partnership will foster key research developments in the areas of food security, energy and health. More Whole Genome Sequencing of Wild Rice Reveals the Mechanisms Underlying Oryza Genome Evoluon In a collaborave study published online in Nature Communicaons, researchers from Instute of Genecs and Developmental Biology, Chinese Academy of Sciences, BGI-Shenzhen, and University of Arizona have completed the genome sequencing of wild rice Oryza brachyantha. This work provides new insights for researchers to understand the funcon and evoluon of Oryza genomes. More H3 Biomedicine and BGI Announce Collaboraon to Develop and Share Crucial Cancer Genomic Sequencing Data H3 Biomedicine Inc., a biopharmaceucal company specializing in the discovery and development of oncology treatments, and BGI jointly announced that they have entered into a partnership to sequence and publish genomic data from pre-clinical cancer models. This research, which aims to idenfy and validate recurrent gene mutaons that are potenal targets for drug therapies, is crucial for the enre oncology drug discovery industry. Consistent with their respecve ongoing commitments to open-access research, as well as BGI's disnguished history of published, collaborave research, H3 and BGI will release the cancer genomic data to the global research community upon compleon of data analysis. More Genomic Sequences of Peregrine and Saker Falcons Throw New Lights on Evoluon of a Predatory Lifestyle In a collaborave study published online in Nature Genecs, researchers from Cardiff University, BGI, Internaonal Wildlife Consultants, Ltd., and Abu Dhabi Falcon Hospital, have completed the genome sequencing and analysis of two iconic falcons, the peregrine (Falco peregrinus) and saker (Falco cherrug). The work provides an invaluable resource for the deep understanding of the adapve evoluon in raptors and the genec basis of their wide distribuon. More Chinese Sciensts Report the Latest Genomic Studies of Wheat, Shedding New Light on Crop Adaptaon and Domescaon The advanced online publicaon version of Nature today presents two manuscripts that provide an unprecedented glimpse into the adaptaon and domescaon of wheat. These achievements are the results of joint efforts led by the Instute of Genecs and Developmental Biology (IGDB), Chinese Academy of Sciences, Chinese Academy of Agricultural Sciences (CAAS), and BGI. The two projects sequenced and analyzed two ancestral wheat genomes of Tricum urartu and Aegilops tauschii, respecvely, throwing light on the biology of the world’s primary staple crop and providing valuable new resource for thegenec improvement of wheat. More BGI Shenzhen Ranked 6th of NPI China Top 10 Instuons In March of 2013, Nature Publishing Group published Nature Publishing Index (NPI) 2012 Asia Pacific. BGI Shenzhen is ranked 6th of China Top 10 Instuons and 18th of Asia Pacific Top 200 Instuons. More BGI-Shenzhen Completes Acquision of Complete Genomics BGI-Shenzhen ("BGI"), a leading internaonal genomics organizaon based in Shenzhen, China, today announced that through its wholly-owned subsidiary, Beta Acquision Corporaon, it has successfully completed the acquision of Complete Genomics, Inc. (formerly NASDAQ: GNOM) ("Complete"), an innovave leader in accurate whole human genomic sequencing. More China (Mainland) BGI-Shenzhen, Beishan Industrial Zone, Yanan District, Shenzhen, 518083, China Tel: 400-706-6615 +86-755-2527-3620 Email: [email protected] www.genomics.cn Asia PacificHong KongBGI Hong Kong Co. Limited, 16th Dai Fu Street, Tai Po Industrial Estate, Tai Po, Hong Kong Tel: +852-3610-3510 Email: [email protected] bgitechsoluons.com North America (Boston) BGI Americas Corporaon, One Broadway, 14th Floor, Cambridge, MA 02142, USA Tel: +1-617-500-2741 Email: [email protected] www.bgiamericas.com bgitechsoluons.com Europe (Copenhagen) BGI Europe, Copenhagen Bio Science Park, Ole Maaløes Vej 3, 2200 Copenhagen, Denmark Tel: (+45) 70260806 Email: [email protected] bgitechsoluons.com Japan(Kobe) BGI Japan, Kobe KIMEC Center BLDG. 8F, 1-5-2 Minatojima-minamimachi, Chuo-ku, KobeCity, Hyogo-pref. 650-0047, JAPAN Tel: +81-78-599-6108 Email: [email protected] www.bgisequence.com/jp/ Coming Up Events Hosted by BGI 2013 Internaonal Conference on Genomics in Europe June 25-28th, 2013, Ghent, Belgium Learn More Meet BGI at HGM 2013 and 21st Internaonal Congress of Genecs April 13-18th, 2013, Singapore Learn More www.genomics.cn Subscribe / Unsubscribe A Novel Soluon for Heterozygous Genomes —Ultra-Deep De novo Sequencing Introducon Aiming at the construcon of the heterozygous genomes sequence map, BGI Tech has introduced a novel soluon, which is based on the next high-throughput sequencing technology and ultra sequencing depth (>200X), to get high quality genome map by using the latest version of SOAPdenovo2, combining with the original algorithm on heterozygous sequence recognion. Advantages Lower cost: The sharp decline of cost in comparison with tradional heterozygous genome strategies. Faster turnaround time: Only 6 months Higher quality: The ultra depth, novel soſtware, original algorithm and large fragment library guarantee the map with high quality. Learn More DNA Importance Connues....Maybe one day, everyone will have their own DNA profiles that like ID card. Human Health & Medicine 1. Stem Cells Enable Personalized Treatment for Bleeding Disorder More 2. New Froners in Breast Cancer Screening More 3. Counng Copy Numbers Characterizes Prostate Cancer More 4. Anbody Evoluon Could Guide HIV Vaccine Development More 5. Discovery in Neuroscience Could Help Re-Wire Appete Control More 6. Shung Down DNA Construcon: How Senescence Halts Growth of Potenal Cancers More 7. Cancer Growth Curtailed More 8. Cancer Checkpoint: Mitochondrial Metabolic Regulator SIRT4 Guards Against DNA Damage More Pharma & Biotech 1. Breakthrough Cancer-killing Treatment has No Side-effects, Study Finds More 2. Cisplan-Resistant Cancer Cells Sensive to Experimental Ancancer Drugs Called PARP Inhibitors More 3. Reseng Addicted Brain: Laser Light Zaps Away Cocaine Addicon More 4. Phase 1 ALS Trial is First to Test Ansense Treatment of Neurodegenerave Disease: No Serious Adverse Effects Reported More 5. 3-D Scaffolds a New Tool to Fight Cancer More 6. Old Drug Offers New Hope Against Rare, Deadly Childhood Disease More 7. Medicaon Duloxene Helps Reduce Pain from Chemotherapy More 8. Cancer Drugs an Unexpected Ally in the Bale Against Malaria More Plants & Animals 1. An Ancient Biosonar Sheds New Light on the Evoluon of Echolocaon in Toothed Whales More 2. Let Me Introduce Myself -- Leafcuer Bee Megachile Chomskyi from Texas More 3. The Falsity of Living Fossils More 4. How Rats See Things More 5. An Inside Look at Carnivorous Plants More 6. Remaining Unnoced For 100 Years, a Kyrgyz Onion Species Strikes With Its Beauty More 7. Genec Study of House Dust Mites Demonstrates Reversible Evoluon More 8. Team Provides New Insight into Photosynthesis More 60 years aſter the discovery of DNA structure - but what does that mean for us today? This year marks the 60th anniversary of the historic discovery of DNA’s double helix structure- the basis of all life in the world. For their discovery, sciensts Francis Crick, James Watson and Maurice Wilkins were awarded the 1962 Nobel Prize. Since then, DNA has launched a scienfic revoluon and forever changed human understanding of life. We all know that DNA is what makes up human life, but what does that mean for us today? Disease Diagnosis and Treatment One important area of DNA research is disease and medical research. The discovery of DNA has essenally led to breakthrough in drugs and treatments for paents with serious illnesses, especially for the hereditary diseases. Among them, adenosine deaminase (ADA) deficiency was the first disease approved for treatment with gene therapy. Picks of breakthroughs: Using Gene Therapy to Manipulate the Immune System Spurs Leukemia Hope Gene May Help Predict Best Chemotherapy Treatment for Pancreac Cancer Paents Stem-Cell Gene Therapy for the Wisko–Aldrich Syndrome The Hemophilias—From Royal Genes to Gene Therapy Agriculture and DNA The discovery of DNA has an important effect on agriculture because it has allowed breeders to facilitate the breeding of economic crops and animals that have a beer resistance to against harsh environment and diseases. Major efforts are underway worldwide to help extricate vulnerable dryland communies out of poverty and hunger, parcularly those in the under-developed countries and regions. Picks of breakthroughs: DNA Marker Technology to Improve Dairy Breeding Program In Triplicate, Genes Make Maize Tolerant to Toxic Soil Discovery of Genec Mechanism Allowing Potato Culvaon in Northern Latudes A Promising Fruit: The Tree Tomato Environment and DNA Threats to wildlife; loss of biodiversity; ecosystem deprivaon; climate change/global warming and Ozone diminuon have emerged as major environmental challenges for our planet today. Genomic technologies throw new lights on the environmental protecon. Picks of breakthroughs: Preserving Nigeria's Biodiversity Through DNA Barcoding Sciensts Report First Sequencing Of Environmental Genome Community Structure and Metabolism Through Reconstrucon of Microbial Genomes From the Environment Genomic and Funconal Adaptaon in Surface Ocean Planktonic Prokaryotes Microbe 1. Study Unravel Mechanism Crical for Fungal Virulence More 2. Symbioc Bacteria Program Daily Rhythms in Squid Using Light and Chemicals More 3. Microbe Swapping at the Roller Derby More 4. Head-On Collisions Between DNA-Code Reading Machineries Accelerate Gene Evoluon More 5. How Microbes Survive at Bare Minimum: Archaea Eat Protein More 6. Sciensts Develop Monkey Model to Study Novel Coronavirus Infecon More 7. Declaring a Truce With Our Microbiological Frenemies More Register Now Internaonal Conference on Genomics in Europe Ghent, Belgium June 25-28, 2013

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BGI Newsletter

Subscribe / Unsubscribe

News from BGI

Spotlights in Genomics

Research Highlight

Picks of BGI-Tech

Contact BGI Newsletter Tel: +86 755 25283805 Email: [email protected]

This E-mail was sent from BGI, If you do not wish to receive such communication, please click here to unsubscribe.

April 2013Volume 3 Issue 4 Spotlights in Genomics / News from BGI / Research Highlight / Picks of BGI-Tech

www.genomics.cn

BGI Europe Collaborates with GENNET on Genetic Screening for Mendelian DisordersBGI Europe and GENNET, a center for genetics, fetal medicine and assisted reproduction, signed a Memorandum of Understanding (MOU) on genetic screening for Mendelian disorders. This partnership aims to encourage collaborative initiatives in the area of monogenic disease. More

BGI Tech Develops Novel "Ultra-Deep de novo" Assembly Solution for Heterozygous GenomesBGI Tech Solutions Co., Ltd., also referred to as "BGI Tech", introduced its novel assembly solution for facilitating heterozygous genomes research. This marks another technological breakthrough for BGI in heterozygous genome assembly after the completed genome sequencing of oyster, diamondback moth and pear. More

BGI and TGAC join efforts to tackle global challenges in food security, energy and healthThe Genome Analysis Centre (TGAC) and BGI will be working together aiming to strengthen research collaborations and build on the world-class genomics and bioinformatics capabilities of both institutions. This partnership will foster key research developments in the areas of food security, energy and health. More

Whole Genome Sequencing of Wild Rice Reveals the Mechanisms Underlying Oryza Genome EvolutionIn a collaborative study published online in Nature Communications, researchers from Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, BGI-Shenzhen, and University of Arizona have completed the genome sequencing of wild rice Oryza brachyantha. This work provides new insights for researchers to understand the function and evolution of Oryza genomes. More

H3 Biomedicine and BGI Announce Collaboration to Develop and Share Crucial Cancer Genomic Sequencing DataH3 Biomedicine Inc., a biopharmaceutical company specializing in the discovery and development of oncology treatments, and BGI jointly announced that they have entered into a partnership to sequence and publish genomic data from pre-clinical cancer models. This research, which aims to identify and validate recurrent gene mutations that are potential targets for drug therapies, is crucial for the entire oncology drug discovery industry. Consistent with their respective ongoing commitments to open-access research, as well as BGI's distinguished history of published, collaborative research,

H3 and BGI will release the cancer genomic data to the global research community upon completion of data analysis. More

Genomic Sequences of Peregrine and Saker Falcons Throw New Lights on Evolution of a Predatory Lifestyle In a collaborative study published online in Nature Genetics, researchers from Cardiff University, BGI, International Wildlife Consultants, Ltd., and Abu Dhabi Falcon Hospital, have completed the genome sequencing and analysis of two iconic falcons, the peregrine (Falco peregrinus) and saker (Falco cherrug). The work provides an invaluable resource for the deep understanding of the adaptive evolution in raptors and the genetic basis of their wide distribution. More

Chinese Scientists Report the Latest Genomic Studies of Wheat, Shedding New Light on Crop Adaptation and DomesticationThe advanced online publication version of Nature today presents two manuscripts that provide an unprecedented glimpse into the adaptation and domestication of wheat. These achievements are the results of joint efforts led by the Institute of Genetics and Developmental Biology (IGDB), Chinese Academy of Sciences, Chinese Academy of Agricultural Sciences (CAAS), and BGI. The two projects sequenced and analyzed two ancestral wheat genomes of Triticum urartu and Aegilops tauschii, respectively, throwing light on the biology of the world’s primary staple crop and providing valuable new resource for thegenetic improvement of wheat. More

BGI Shenzhen Ranked 6th of NPI China Top 10 InstitutionsIn March of 2013, Nature Publishing Group published Nature Publishing Index (NPI) 2012 Asia Pacific. BGI Shenzhen is ranked 6th of China Top 10 Institutions and 18th of Asia Pacific Top 200 Institutions. More

BGI-Shenzhen Completes Acquisition of Complete GenomicsBGI-Shenzhen ("BGI"), a leading international genomics organization based in Shenzhen, China, today announced that through its wholly-owned subsidiary, Beta Acquisition Corporation, it has successfully completed the acquisition of Complete Genomics, Inc. (formerly NASDAQ: GNOM) ("Complete"), an innovative leader in accurate whole human genomic sequencing. More

China (Mainland) BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, ChinaTel: 400-706-6615 +86-755-2527-3620 Email: [email protected] www.genomics.cn

Asia Pacific(Hong Kong)BGI Hong Kong Co. Limited, 16th Dai Fu Street, Tai Po Industrial Estate, Tai Po, Hong KongTel: +852-3610-3510 Email: [email protected] bgitechsolutions.com

North America (Boston)BGI Americas Corporation, One Broadway, 14th Floor, Cambridge, MA 02142, USATel: +1-617-500-2741 Email: [email protected] www.bgiamericas.com bgitechsolutions.com

Europe (Copenhagen)BGI Europe, Copenhagen Bio Science Park, Ole Maaløes Vej 3, 2200 Copenhagen, Denmark Tel: (+45) 70260806 Email: [email protected] bgitechsolutions.com

Japan(Kobe)BGI Japan, Kobe KIMEC Center BLDG. 8F, 1-5-2 Minatojima-minamimachi, Chuo-ku, KobeCity, Hyogo-pref. 650-0047, JAPANTel: +81-78-599-6108 Email: [email protected] www.bgisequence.com/jp/

Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Coming Up Events Hosted by BGI2013 International Conference on Genomics in EuropeJune 25-28th, 2013, Ghent, Belgium Learn More

Meet BGI atHGM 2013 and 21st International Congress of GeneticsApril 13-18th, 2013, Singapore Learn More

www.genomics.cnSubscribe / Unsubscribe

A Novel Solution for Heterozygous Genomes—Ultra-Deep De novo Sequencing

Introduction

Aiming at the construction of the heterozygous genomes sequence map, BGI Tech has introduced a novel solution, which is based on the next high-throughput sequencing technology and ultra sequencing depth (>200X), to get high quality genome map by using the latest version of SOAPdenovo2, combining with the original algorithm on heterozygous sequence recognition.

AdvantagesLower cost: The sharp decline of cost in comparison with traditional heterozygous genome strategies.

Faster turnaround time: Only 6 months

Higher quality: The ultra depth, novel software, original algorithm and large fragment library guarantee the map with high quality.

Learn More

DNA Importance Continues....Maybe one day, everyone will have their own DNA profiles that like ID card.

Human Health & Medicine

1. Stem Cells Enable Personalized Treatment for Bleeding Disorder More

2. New Frontiers in Breast Cancer Screening More

3. Counting Copy Numbers Characterizes Prostate Cancer More

4. Antibody Evolution Could Guide HIV Vaccine Development More

5. Discovery in Neuroscience Could Help Re-Wire Appetite Control More

6. Shutting Down DNA Construction: How Senescence Halts Growth of Potential Cancers More

7. Cancer Growth Curtailed More

8. Cancer Checkpoint: Mitochondrial Metabolic Regulator SIRT4 Guards Against DNA Damage More

Pharma & Biotech

1. Breakthrough Cancer-killing Treatment has No Side-effects, Study Finds More

2. Cisplatin-Resistant Cancer Cells Sensitive to Experimental Anticancer Drugs Called PARP Inhibitors More

3. Resetting Addicted Brain: Laser Light Zaps Away Cocaine Addiction More

4. Phase 1 ALS Trial is First to Test Antisense Treatment of Neurodegenerative Disease: No Serious Adverse Effects Reported More

5. 3-D Scaffolds a New Tool to Fight Cancer More

6. Old Drug Offers New Hope Against Rare, Deadly Childhood Disease More

7. Medication Duloxetine Helps Reduce Pain from Chemotherapy More

8. Cancer Drugs an Unexpected Ally in the Battle Against Malaria More

Plants & Animals

1. An Ancient Biosonar Sheds New Light on the Evolution of Echolocation in Toothed Whales More

2. Let Me Introduce Myself -- Leafcutter Bee Megachile Chomskyi from Texas More

3. The Falsity of Living Fossils More

4. How Rats See Things More

5. An Inside Look at Carnivorous Plants More

6. Remaining Unnoticed For 100 Years, a Kyrgyz Onion Species Strikes With Its Beauty More

7. Genetic Study of House Dust Mites Demonstrates Reversible Evolution More

8. Team Provides New Insight into Photosynthesis More

60 years after the discovery of DNA structure - but what does that mean for us today?

This year marks the 60th anniversary of the historic discovery of DNA’s double helix structure- the basis of all life in the world. For their discovery, scientists Francis Crick, James Watson and Maurice Wilkins were awarded the 1962 Nobel Prize. Since then, DNA has launched a scientific revolution and forever changed human understanding of life.

We all know that DNA is what makes up human life, but what does that mean for us today?

Disease Diagnosis and TreatmentOne important area of DNA research is disease and medical research. The discovery of DNA has essentially led to breakthrough in drugs and treatments for patients with serious illnesses, especially for the hereditary diseases. Among them, adenosine deaminase (ADA) deficiency was the first disease approved for treatment with gene therapy.

Picks of breakthroughs:

Using Gene Therapy to Manipulate the Immune System Spurs Leukemia Hope

Gene May Help Predict Best Chemotherapy Treatment for Pancreatic Cancer Patients

Stem-Cell Gene Therapy for the Wiskott–Aldrich Syndrome

The Hemophilias—From Royal Genes to Gene Therapy

Agriculture and DNAThe discovery of DNA has an important effect on agriculture because it has allowed breeders to facilitate the breeding of economic crops and animals that have a better resistance to against harsh environment and diseases. Major efforts are underway worldwide to help extricate vulnerable dryland communities out of poverty and hunger, particularly those in the under-developed countries and regions.

Picks of breakthroughs:

DNA Marker Technology to Improve Dairy Breeding Program

In Triplicate, Genes Make Maize Tolerant to Toxic Soil

Discovery of Genetic Mechanism Allowing Potato Cultivation in Northern Latitudes

A Promising Fruit: The Tree Tomato

Environment and DNAThreats to wildlife; loss of biodiversity; ecosystem deprivation; climate change/global warming and Ozone diminution have emerged as major environmental challenges for our planet today. Genomic technologies throw new lights on the environmental protection.

Picks of breakthroughs:

Preserving Nigeria's Biodiversity Through DNA Barcoding

Scientists Report First Sequencing Of Environmental Genome

Community Structure and Metabolism Through Reconstruction of Microbial Genomes From the Environment

Genomic and Functional Adaptation in Surface Ocean Planktonic Prokaryotes

Microbe

1. Study Unravel Mechanism Critical for Fungal Virulence More

2. Symbiotic Bacteria Program Daily Rhythms in Squid Using Light and Chemicals More

3. Microbe Swapping at the Roller Derby More

4. Head-On Collisions Between DNA-Code Reading Machineries Accelerate Gene Evolution More

5. How Microbes Survive at Bare Minimum: Archaea Eat Protein More

6. Scientists Develop Monkey Model to Study Novel Coronavirus Infection More

7. Declaring a Truce With Our Microbiological Frenemies More

Register Now

International Conference on Genomics in EuropeGhent, Belgium June 25-28, 2013