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www.xenon-pharma.com NASDAQ: XENE ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE “Addressing an Unmet Medical Need in Adult Focal Epilepsy with XEN1101, a Novel K V 7 Modulator” DR. ERNESTO AYCARDI CHIEF MEDICAL OFFICER | XENON PHARMACEUTICALS INC. FEBRUARY 22, 2021 ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE

ASENT2021 Aycardi - Xenon Pharma

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www.xenon-pharma.comNASDAQ: XENE

ASENT 2021VIRTUAL NEUROTHERAPEUTICS CONFERENCE

“Addressing an Unmet Medical Need in Adult Focal Epilepsy with XEN1101, a Novel KV7 Modulator”

DR. ERNESTO AYCARDIC H I E F M E D I C A L O F F I C E R | X E N O N P H A R M A C E U T I C A L S I N C .

F E B R UA R Y 2 2 , 2 0 2 1

ASENT 2021VIRTUAL NEUROTHERAPEUTICS CONFERENCE

Xenon’s Ion Channel, Neurology-Focused Pipeline

Therapeutic Program Indication

Pre-clinical

Phase 1 Phase 2 Phase 3

NBI-921352 (XEN901) and NaV1.6/1.2 Sodium Channel InhibitorsEpilepsy (Orphan Pediatric and Adult Focal)

XEN1101 (Potassium Channel Modulator) Adult Focal Epilepsy

Ion Channel Modulators Orphan Channelopathies

XEN007* (Calcium Channel Inhibitor)Childhood Absence Epilepsy

XEN496 (Potassium Channel Modulator) Orphan Pediatric Epilepsy

NaV1.7 InhibitorsPain

FX301 Post-operative Pain

*A physician-led, Phase 2 proof-of-concept study is ongoing to examine XEN007 as an adjunctive treatment in pediatric patients diagnosed with treatment-resistant childhood absence epilepsy (CAE).

2ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021

KCNQ2 is a Highly Validated Target

▪ KCNQ2 dampens neuronal hyper-excitability

▪ K+ channels have important inhibitory control over neuronal firing in the CNS

▪ Repolarize membranes to end the action potential

▪ K+ channel opener (potentiator) decreases hyper-excitability in the brain

▪ Mechanism validated clinically with first-generation KV potentiator, ezogabine

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 3

XEN1101 is a Novel, “Next-Gen” KV7 Channel Modulator

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 4

▪ Potential “only-in-class” KV7 potassium channel modulator to treat adult focal seizures

▪ Addresses limitations of first-gen KV7 modulator, ezogabine• No pigmentation or urinary

symptoms observed

• PK addressed (TID → QD)

▪ Novel MOAs needed for rational polypharmacy approach

▪ Potential efficacy for common comorbidities, such as depression

XEN1101’s Differentiated Profile in Adult Focal Epilepsy

▪ Potential for a highly differentiated profile within the adult focal epilepsy space:

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 5

Safety / Tolerability

Favorable safety profile and well-tolerated in Phase 1

Evening QD dosing with Cmax

(and related CNS AEs) during sleeping hours

Low Cmax to Cmin provides better tolerability

To date, low drop out rates and high conversion rates to OLE in ongoing blinded Phase 2b trial

Efficacy

Proven anti-seizure mechanism of action

Broad efficacy in multiple pre-clinical seizure models as monotherapy or in combination with other ASMs

Greater effect on TMS target engagement

❑Phase 2b trial modeled for median monthly seizure reduction in the range of currently used ASMs

Ease of Use

Once daily (QD) dosing

No titration; at efficacious doses immediately

No significant DDI predicted

Low daily dose

No drug allergic reactions observed

Slow elimination could provide coverage for missed doses

XEN1101: Anti-Seizure Activity (vs Ezogabine)

▪ Maximal Electroshock Stimulus (MES) using 60 Hz bipolar stimulus with CF-1 mice

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 6

▪ Improved Therapeutic Index of XEN1101 versus Ezogabine

0.01 0.1 1 10 1000.0

0.2

0.4

0.6

0.8

1.0

[plasma] mM

Fra

ction S

eiz

uring

RetigabineIC50 = 3.5 uM

XEN1101IC50=0.22 uM

Ezogabine

0 20 40 60 80 1004 27 50

Ezogabine

XEN1101

mg/kg

Teste

d 1

h P

ost

Do

se

Mouse ED50 or TD50 (Mean: 95% CI)

scPTZ

scPicrotoxin

scBicuculline

MES

6Hz 32mA

6Hz 44mA

Rotarod

XEN1101 is 16-fold more potent than ezogabine

Combining XEN1101 with Common ASMs Provides Robust Seizure Protection

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 7

Veh

icle

XEN11

01 1

mpk

Val

proic

Aci

d 100

mpk

Com

bined

0.0

0.2

0.4

0.6

0.8

1.0

Fra

cti

on

Se

izin

g

Veh

icle

XEN11

01 4

mpk

Levet

irac

etam

300

mpk

Com

bined

0.0

0.2

0.4

0.6

0.8

1.0

Fra

cti

on

Se

izin

g

Veh

icle

XEN11

01 3

mpk

Lacosa

mid

e 10

mpk

Com

bined

0.0

0.2

0.4

0.6

0.8

1.0

Fra

cti

on

Se

izin

g ✱

Veh

icle

XEN11

01 1

mpk

Cen

obamat

e 5

mpk

Com

bined

0.0

0.2

0.4

0.6

0.8

1.0

Fra

cti

on

Seiz

ing

Mouse MES6Hz 34 mA Mouse MES Mouse MES

▪ Combining ineffective or weakly active doses of XEN1101 and common ASMs enhances robust seizure protection

▪ Enhanced efficacy is not a drug-drug interaction phenomenon; not explained by changes in plasma levels▪ Combination doses were well tolerated

XEN1101 Phase 1 Adaptive Integrated DesignSAD

Cohort 1

Cohort 2

Cohort 3

Cohort 4

Cohort 5

Cohort 6

Optional

Cohort 1

Cohort 2

Cohort 3

Cohort 1

Cohort 2

Cohort 3

Optional

TMS Pilot Ph 1b TMS Cross-over

PlaceboDrug

Placebo Drug

X

20 mg, n=20

fasted, 15 mg, n=6

MADplacebo n=6

5 mg, n=3

15 mg, n=3

20 mg, n=6

30 mg, n=6

food effect, 20 mg, n=10

placebo n=8

10 mg, n=2

15 mg, n=3

20 mg, n=3

fed, 15 mg, n=6

fed, 25 mg, n=6

Fed 25 mg, n=6

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 8

Phase 1: Summary of Single Dose Findings

▪ Food enhanced absorption and delayed time to Cmax

▪ Long terminal elimination half-life

▪ Minimal renal excretion of unchanged drug

▪ Generally well tolerated at up to 30 mg• Majority of AEs were mild and CNS related

• Dizziness, headache, somnolence, myalgia, presyncope and blurred vision were the most common related AEs in SAD cohorts

• No QT prolongation or safety lab signals

• No SAEs

9ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021

Phase 1: Summary of Multiple Dose Findings

▪ XEN1101 has a PK profile consistent with QD

▪ Near steady-state within 1 week, full steady-state within 3 weeks

▪ Absorption is enhanced by food

▪ Exposure increased dose proportionally (15 - 25 mg QD) in fed state

▪ Low inter-individual PK variability with repeat dose

▪ AE profile consistent with MOA (e.g., dizziness, sedation, blurred vision)

▪ No signal of urinary retention • Post-void residual volume normal (bladder ultrasound)

▪ No safety signals in ECG or safety labs; no SAEs

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 10

Individual PK profiles for subjects dosed at 25 mg QD XEN1101

Phase 1b: Transcranial Magnetic Stimulation (TMS) PD Study

▪ TMS is a non-invasive tool to study human cortical excitability and target engagement of CNS acting drugs

▪ Multiple ASMs show effects on TMS at efficacious plasma levels, including ezogabine

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 11

EMG:Resting Motor Threshold (RMT%) reflects cortico-spinal excitability

EEG:TMS-evoked EEG potentials (TEPs) allow direct evaluation of cortical excitability in a time-resolved fashion manner

Figure 1: TMS Study Diagram

Active

Placebo

Eligible

subjects

Active

Placebo

Day 14

Follow-up

Visit

Day 30 Follow-up

Call

Day 1+2

(2-day visit)

Day 7+8

(2-day visit)

Screening

Period

Day 28 – Day 0

Phase 1b XEN1101 Cross-Over Study

▪ To evaluate the safety, tolerability, pharmacokinetics and TMS effects of XEN1101 in a double-blind, placebo-controlled, cross-over study• London, UK (King’s College Hospital)

• Male healthy volunteers (18-55 years)

• Single dose, 20 mg

• N = 20

• Placebo-controlled, double-blind

• Cross-over

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 12

Phase 1b: XEN1101 Reduced Corticospinal Excitability (TMS-EMG)

XEN1101 (20mg)

Placebo

XEN1101 Plasma level

* p<0.05** p<0.01

0 2 4 6 8

0

2

4

6

0

2 0

4 0

6 0

R e s t in g M o to r T h re s h o ld

T im e (h )

Ch

an

ge

fro

m B

as

eli

ne

RM

T

(% m

ax

imu

m s

tim

ula

tor o

utp

ut)

XE

N1

10

1 C

on

ce

ntr

ati

on

(n

g/m

L)

X E N 1 1 0 1 (2 0 m g )

P la c e b o

X E N 1 1 0 1 P la sm a le ve l

*

* *

* *

~2X the effect of ezogabine at 400mg dose

(2.4%) Ossemann et al,, 2016

13ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021

Significant increase in RMT indicates reduced corticospinal excitability; strong PK-PD relationship

Phase 1b: XEN1101 Reduced Corticospinal Excitability (TMS-EEG)

▪ XEN1101 reduced the overall amount of electrical activity induced by TMS

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 14

TMS evoked potentials (TEPs) Global Mean Field Power (GMFP)

Effects shown at time of maximum XEN1101 plasma level (~45 ng/mL) during assessments compared to time matched placebo.

-0.1 0 0.1 0.2 0.3 0.40

0.5

1

1.5

2

2.5

3

Time (s)

GM

FP

(uv2

)

Pre-dose

XEN1101 20 mg

XEN1101 suppressed cortical excitability as evidenced by decreased TEP amplitudes and reduction in GMFP

Use of Phase 1 and TMS to Inform Dose Selection in Phase 2b

▪ Simulations based upon PK parameters in Phase 1

▪ Dose range chosen in Phase 2 will provide two doses with trough levels above effective level in TMS

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 15

Simulated Exposures (Fed State) at Doses Used in Phase 2b Study

Phase 2b Clinical Trial Underway

▪ X-TOLE Study: Randomized, placebo-controlled Phase 2b clinical trial in 300 subjects with focal epilepsy

▪ Endpoints:• The primary endpoint is median percent change (MPC)

from baseline in monthly (28 days) focal seizure frequency in the 8-week double-blind treatment period compared to placebo

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 16

▪ Eligibility criteria include:• ≥4 countable focal seizures per month during an 8 week baseline period

• Patients on stable treatment with 1-3 ASMs

▪ The study is well powered (around 90% power) • Designed to detect a monotonic dose response assuming a -20% MPC in placebo and -25%, -30% and -35% MPC at 10, 20 and 25 mg

QD XEN1101, respectively

▪ Electronic diary to capture seizures, allowing subjects to be closely monitored for events and compliance

• Secondary endpoints include an evaluation of responder rate compared to placebo, as well as evaluation of changes in weekly seizure frequency and quality of life assessments

Conclusions

▪ XEN1101 is a differentiated, next-generation KV7 potassium channel modulator

▪ Adult focal epilepsy is a common form of epilepsy with a high unmet medical need

▪ Safety, tolerability, and ease of use – in addition to efficacy – are important drug attributes for physicians, patients and caregivers

▪ With its with unique pharmaceutical properties, XEN1101 may represent a highly differentiated profile in focal epilepsy space:• Proven, “only-in-class” anti-seizure mechanism of action

• Efficacious as monotherapy and in combination with other ASMs in pre-clinical models

• Well-tolerated in Phase 1 studies and low drop out in blinded Phase 2b

• Once daily (QD) evening dosing; no titration; low Cmax to Cmin

• No significant DDI predicted; low daily dose

▪ Topline results from X-TOLE Phase 2b clinical trial are expected in the third quarter of 2021

ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021 17

Please refer to these additional presentations at ASENT 2021 to learn more:

Dr. Robin Sherrington,“KV7 Modulators in Epilepsy and Depression”

Dr. Alison Cutts,“Depression and Anhedonia: Acute Preclinical Efficacy for XEN1101, a Differentiated KV7 Potassium Channel Modulator”

Dr. J.P. Johnson, Jr.,“Anticonvulsant Effects of the Differentiated KV7 Channel Potentiator XEN1101 in Combination with Commonly Used Anti-Seizure Drugs”

Acknowledgements

Volunteers, Patients, Investigators, Site Personnel, Advisors and Partners involved in the design,

implementation, and execution of clinical studies.

Clinical development and drug discovery teams at Xenon Pharmaceuticals Inc.

18ASENT 2021 VIRTUAL NEUROTHERAPEUTICS CONFERENCE | FEBRUARY 2021