Upload
others
View
5
Download
0
Embed Size (px)
Citation preview
AmmoniumHydroxideandOrangeJuiceSynergisticEffects
onEscherichiacoliJohnLynch
PittsburghCentralCatholicHighSchoolGrade9
pHpHScale
• Measureshowacidicorbasicasubstanceis• Scalefrom0-14• pH<7acidic,pH>7basic,pH=7neutral
Neutralization
• Themixtureofanacidandabase.
• Mixtureofacidandbasecommonlyyieldswater
NavelOrangeJuice
• Verycommonlysoldorange
• MeasuredpHof3(raw)
• ContainslargeamountsofVitaminAandC• Mayhelpanimalsformconnectivetissue• AlsocontainsmanyotherVitamins
ComponentsofOrangeJuice
• Sugars• Proteinsandaminoacids• VitaminsA,C,D,E,K,B12,B6• Thiamin• Pantotheic Acid• Sodium• Potassium
• Water• Mono/Polysaturated fats• Omega-3fattyacids• Calcium• Iron• Magnesium• Phosphorus
AmmoniumHydroxide
• Basicliquid• MeasuredpHof10(2Molar)
• Verycorrosiveandantibacterial• Usedatverysmallmolaritiesincleaners
• ReleasesAmmoniavaporswhenmixedwithanacidorwater.• Toxictohumans athighconcentrations
Escherichiacoli(E.coli)
• Largeanddiversegroupofgram(-)bacteria• Freeliving,symbionts,orpathogens• Moststrainsarenotpathogenic• Serveasacommonprokaryoticcellmodel• Commonmammalian intestinalsymbiont• Environmentalprokaryoticmodel
Rationale
• IndividualOrangeJuice:• Orangefallingfromtree• Disposalofpeels
• IndividualAmmoniumHydroxide• DisposalofAmmonium-basedcleaners
• Mixtureofboth:• Possiblesynergisticeffects• PossibleremedyforAmmonium-basedcleanerspills
Purpose
• TodeterminetheindividualandsynergisticeffectsofNavelorangejuiceandAmmoniumHydroxideonE.Colisurvivorship.
Problem
• WilltherebeasignificanteffectwhenAmmoniumHydroxide,Navelorangejuice,oramixtureofbothisaddedtoEscherichiacoli?
Hypothesis
AlternativeHypothesis:
AmmoniumHydroxideandOrangejuicewillsignificantlyreduceE.colisurvivorship.
Incombination,asynergisticeffectwillimprovesurvivorshipcomparedtoindividualexposures.
Materials
• Borosilicatesteriletesttubes• LatexGloves• LaboratoryGoggles• Micropipettes• SidearmFlask• SterileFilters• Incubator(37o C)• VortexMachine• E.coli(DH5Alpha)• LBAgarPlates(LBMedia)(1%Tryptone,0.5%Yeastextract,1%NaCl)• Spreadbars
• Ethanol• pHstrips• Matches• SterileDilutionFluid(SDF)(100mMKH2PO4,100mMK2HPO4,10mMMgSO4,1mMNaCl)• NavelOrangeJuice• Juicer• Knife• 2MolarAmmoniumHydroxide• SterileDilutionFluid• BunsenBurner
Procedure
1. E.coliwasgrownuntiladensityof50klett spectrophotometerdensitywasreached.Thiswasapproximately10^8cells/mL
2. Theculturewasdilutedinsteriledilutionfluidtoaconcentrationofapproximately10^5cells/mL
3. Stocksofthevariableswerecreated;
1. 10mLoforangejuicewassterilefiltered
2. A10-2 stockofAmmoniumHydroxidewasmade
4. Thevariableswereaddedtothetubesasfollows:
ExperimentalExposuresAmmoniumHydroxide(10-2stock)Zero Low High
Zero 0mL 0mL 0mL Key:0mL 10uL 1mL OrangeJuice
OrangeJuice 100uL 100uL 100uL AmmoniumHydroxide9.9mL 9.89mL 8.8mL Escherichiacoli
Low 100uL 100uL 100uL SterileDilutionFluid0mL 10uL 1mL100uL 100uL 100uL Concentrationin%:9.8mL 9.79mL 8.8mL Low High
High 1mL 1mL 1mLAmmoniumHydroxide 0.00005% 0.005%
0mL 10uL 1mLOrangeJuice 1% 10%
100uL 100uL 100uL8.9mL 8.89mL 7.9mL
5. 0.1mLofE.colistockwasaddedtoeachtube,andallowedtoincubateatroomtemperaturefor15minutes
6. 0.1mLofthealiquotswerespreadontotheagarplates
7. Theplateswerethenincubatedfor24hoursandthecolonieswerecounted
179
153
136
179
138
115
100110120130140150160170180190
[Zero] [Low] [High]
Numbe
rofC
olon
ies
ConcentrationLevels
IndividualVariable’sEffects
OrangeJuice AmmoniumHydroxide
P- value:0.024806
P-value:0.008053
Alpha:0.05
SynergisticEffectsonE.Coli
020406080100120140160180200
ZeroOrangeJuice LowOrangeJuice HighOrangeJuice
Num
bero
fColon
ies
AveragesofAllSolutions
ZeroAmmoniumHydroxide LowAmmoniumHydroxide HighAmmoniumHydroxide
DataAnalysis:Two-factorANOVA
• Two-WayANOVAforbothVariables:• InteractionP-value:Yes,thepvaluewasat0.000262
• Interpretation:Rejectnull;therewasasignificanteffect
• Typeofeffect:Themixedvariablesappearedtoreducethenegativeeffects
Alpha:0.05
FurtherInterpretation
AVERAGESOFCOLONIES
AmmoniumHydroxide
Zero Low High
OrangeJuice
Zero 179 138 115
Low 153 151 151
High 136 145 179
pHChartandInterpretation
• pHsolelydoesn’tseemtobetheaffectingfactor
pHLevels
AmmoniumHydroxide
Zero Low High
Orange Zero 7 7 7
Juice Low 7 7 7High 6 6 6
KeyQuestions
• DidtheNavelOrangeJuicealonehaveasignificanteffectonE.coli?• Yes,p-valuewaslessthan0.05
• DidtheAmmoniumHydroxidealonehaveasignificanteffectonE.coli?• Yes,p-valuewaslessthan0.05
• DidthemixtureofbothhaveasignificanteffectontheE.coli?• Yes,p-valuewaslessthan0.05
OverallConclusions
• Therewerenegativeindividualeffectsofthevariables,butapositivesynergisticeffect.
LimitationsandExtensions
Limitations:
• Onlyoneexposuretime• Chanceofcontamination• UnevendistributionofE.coliinsolution• Smallexposuretolight• Narrowrangeofvariableconcentrations
Extensions:
• Varyexposuresandconcentrations• Morereplicates• Otherculturesofbacteria• Differenttypesoforangejuice• Othersynergisticeffects
Sources
• "NutritionFacts."AndAnalysisforOrangeJuice,Raw.N.p.,n.d.Web.11Jan.2016.
• "PHScale."PHScale.N.p.,n.d. Web.15Dec.2015.http://chemistry.elmhurst.edu/vchembook/184ph.html
• "#1DentistRecommendedToothpasteFor Sensitivity."Sensodyne ToothpasteforSensitiveTeeth.N.p.,n.d. Web.15Dec.2015.
• us.sensodyne.com
• "Molarity."Molarity.N.p.,n.d. Web.15Dec.2015.
• http://dl.clackamas.edu/ch105-04/molarity.htm
• "Aqion."Aqion.N.p.,n.d. Web.15Dec.2015.
• http://www.aqion.de/site/191
• "OrangeFruitNutritionFactsandHealthBenefits."NutritionAndYou.com.N.p.,n.d. Web.16Dec.2015.
• http://www.nutrition-and-you.com/orange-fruit.html
• OfficeofDietarySupplements- VitaminA."VitaminA— Consumer.N.p.,n.d. Web.16Dec.2015.
• https://ods.od.nih.gov/factsheets/VitaminA-Consumer/
• "AmmoniumHydroxide."AmmoniumHydroxide.N.p.,n.d. Web.16Dec.2015.
• http://pubchem.ncbi.nlm.nih.gov/compound/ammonium_hydroxide#section=Metabolism-Metabolites
• "BugsintheNews- WhattheHeckIsanE.Coli?"BugsintheNews- WhattheHeckIsanE.Coli? N.p.,n.d. Web.16Dec.2015.
• http://people.ku.edu/~igmdoc/ecoli.html
• "ResultFilters."NationalCenterforBiotechnologyInformation.U.S.NationalLibraryofMedicine,n.d. Web.16Dec.2015.
• http://www.ncbi.nlm.nih.gov/pubmed/21558695
• "QuestionsandAnswersaboutAmmoniumHydroxideUseinFoodProduction."FoodInsight.org.N.p.,n.d. Web.18Dec.2015.
• http://www.foodinsight.org/Questions_and_Answers_about_Ammonium_Hydroxide_Use_in_Food_Production
DataChartAmmoniumHydroxide
Zero Low High
Zero 193 179 88127 107 118195 130 115
Orange Juice 174 217 111148 134 116
Low 140 145 237240 163 178139 158 132169 136 144165 105 149
High 119 55 177130 157 171147 167 196165 151 170147 105 128
One-WayANOVA:AmmoniumHydroxideSUMMARYGroup Count Sum Average VarianceC1 4 710 177.5 476.333C2 4 550 137.5 907C3 4 460 115 8.66667
ANOVASource SS df MS Ftest P-value F-CriticalBetween 8016.67 2 4008.33 8.63865 0.008053 4.2565Within 4176 9 464Total 12192.7 11
ConclusionsHo: μ1=μ2=μ3=...Ha Atleast2μ'sdifferF-Test 8.63865F-Critical 4.2565Alpha 0.05P-Value 0.008053Decision: RejectHo
One-WayANOVA:Orange JuiceSUMMARYGroup Count Sum Average VarianceC6 4 710 177.5 476.333C7 4 613 153.25 254.917C8 4 543 135.75 188.917
ANOVASource SS df MS Ftest P-value F-CriticalBetween 3516.5 2 1758.25 5.73238 0.024806 4.2565Within 2760.5 9 306.722Total 6277 11
ConclusionsHo: μ1=μ2=μ3=...Ha Atleast2μ'sdifferF-Test 5.73238F-Critical 4.2565Alpha 0.05P-Value 0.024806Decision: RejectHo
TwoFactorANOVAWithReplicationa
Summary O L H Total
O
Count 4 4 4 12
Sum 710 550 460 1720
Average 177.5 137.5 115 143.333
Variance 476.333 907 8.66667 1108.42
L
Count 4 4 4 12
Sum 613 602 603 1818
Average 153.25 150.5 150.75 151.5
Variance 254.917 151 380.917 216.273
H
Count 4 4 4 12
Sum 543 580 714 1837
Average 135.75 145 178.5 153.083
Variance 188.917 754.667 145.667 664.992
ANOVA
Source SS df MS Ftest P-value F-Critical
Samples(rows) 657.056 2 328.528 0.904735 a 3.35413
Columns 775.056 2 387.528 1.06722 0.358032 3.35413
Interaction 11307.3 4 2826.82 7.7848 0.000262 2.72777
Within 9804.25 27 363.12
Total 22543.6 35
Conclusions
InteractionHo: NOInteractionHa InteractionExistsF-Test 7.7848F-Critical 2.72777Alpha 0.05P-Value 0.000262Decision: RejectHo
Samples(rows)Ho: μ1=μ2=μ3=...Ha Atleast2μ'sdifferF-Test 0.904735F-Critical 3.35413Alpha 0.05P-Value 0.416567Decision: FailtorejectHo
ColumnsHo: μ1=μ2=μ3=...Ha Atleast2μ's differF-Test 1.06722F-Critical 3.35413Alpha 0.05P-Value 0.358032Decision: FailtorejectHo