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Akey tosustainable managementofgrapevine resistance :acase
study with downy mildew
FrançoisDelmotte,ChloéDelmas,YannDussert,IsabelleDemeaux,SylvieRichart-Cervera,CaroleCouture,FrédéricFabre,LaurentDelièreINRABordeaux,France
• Decreasingsignificantly(>50%)thegrapevinedependencyuponfungicidesnecessarilyinvolvesa“breakthrough”.
• Inthisline,theuseofnaturalgrapevineresistance againstpathogensiscertainlythemostpromising“innovation”toreducefungicidetreatments.
Resistances arepresent innorth america whereVitisspecies havecoevolved with thepathogens
AmericanVitis spp
AsiaticVitis spp
V.vinifera
• New grapevine varieties showing low to high level ofresistance to powdery and downy mildew are nowregistrated in Europe.
• Contrary to « old interspecific hybrids », these newlybred varieties present good cultural and oenologicalfeatures.
INRAresistantcultivar(blanc) INRAcultivar (noir)V.vinifera(Merlot)
Chemicalcontrol
Moving ontowards amorebalancedcropping system
Plantmanipulation
Biological methods
Chemicalcontrol
Plantdiseaseresistance
LONG-TERM AGRONOMICAL AND ECONOMICAL PERFORMANCESOF LOW INPUT WINE-GROWING SYSTEMS
System cultivar strategy
RES Resistant variety Low-input
INT Merlot IPM
BIO Merlot ORGANIC
100m
N PlantationDensityTotalareaDesignAssesmment
20116580ceps/ha1,8ha3replicates of0,2ha• Yield• Disease prevalence• Labourtime• Costs• Wine quality• Pesticide residus
TOWARDS LOW INPUT WINE-GROWING SYSTEMS
-90%
-20%
0
2
4
6
8
10
12
14
16
Reference Organic Resistant
TreatmentFrequencyIndex
Bordeaux,2015
INRA-IJ134
• However,weneedtomakesurethattheresistanceemployednotonlyiseffective,butalsopersistsintime,despitetheconstantevolutionofpathogens.
• Thedurabilityofresistanceisespeciallyimportantinperennialspecieslikegrapevinewhicharemeanttostayinthefieldforatleast20years.
• We knowfrom results obtained inmany otherpathosystems that plantR-genes arenot« everlastings »…
Theother side ofthecoin:R-genes durability
Plantresistance genes arenot« everlastings »
What makes aresistance durable?• Thenatureofresistance genes andthe
interactionwith pathogen effectors isimportant(totalvspartialresistance)
• Theevolutionnary constrains related thethemodificationofthecorresponding avrgene inthepathogen =>theso-called‘Cost ofvirulence’
• Theevolutionnary potential ofpathogenpopulations
ü Genetic diversity,reproductivesystem,populationeffectivesizes,gene flow,etc.
❸Sporulation
❶Germination
❷Latency
25 American Vitis spp.
XIXthGrape
pathogens
Grapevine downymildew is anoomycete,Stramenopiles
Plasmoparaviticolais anativespecies fromNorth America
P.viticola attacks alargerangeofVitisspp.innorthAmerica
Rouxel etal.,Phytopathology2014
Inits nativerange,P.viticola is acomplexofseveral crytic species that arehostspecialized onwild andcultivated vitis spp.
AC
BD
Vitis spp.
1878
99
99100
P.viticolaf.sp.riparia
P.viticolaf.sp.vinifera
P.viticola f.sp.aestivalis
β-tubulin gene83haplotypes
P.viticola f.sp.quinquefolia
ØVery low geneticdifferentiation
ØFST=0,020*
Ø low butsignificant IBDatthecontinentalscale
• Ariskrelatedtore-introductionsofthepathogenintoEurope
• Efficientsexualreproduction• Largepopulationeffectivesizeandimportantgeneflowatlargegeographicalscales
Highevolutionarypotential
Bianca • Villard Blanc x Bouvier : Bianca
• Cultivated in Hongaria (<1000 ha)
• One strain of P. viticola breaks down the Rpv3 resistance…
P.viticola is evolving evolveinresponsetoplantresistancedeployment
Inoculationofhostplantswith
pathogenisolates
Pathogenlife-cyclequantitative
traitsassessment
LargescalesamplingofP.viticola isolates
Testingforpathogenadaptationtopartialresistance
Alsace-Baden
Zurich
Vaud-ValaisTessino
Sampling design--- [n=103]20locations,>20grapevine varieties
Susceptible host (V. vinifera)
…
Inoculated
ho
sts
Bronner Prior Regent Cab. sauvignon
Resistant host (n=11)
Pathogen
po
pulatio
ns
o 103 isolates * 4 plantso 412 interactions o 1545 leaf discs
o Sporangial productiono Sporangia sizeo Latent periodo Sporulation dynamicso Number of zoospore
QuantitativetraitsofpathogenicityAuniquebioassay
Diminution de l’efficacité de la résistance de la vigne contre le mildiou
-26%
-26%
-7% Naïve population49isolates from V.vinifera
Adapted population54isolates from resistantvarieties
Efficacy ofresistance (%)
Anundergoing erosion ofgrapevine partialresistance
Rpv3 Rpv3 Rpv10
Cultivarspecificity?Ageneralincreaseofaggressiveness
50
100
150
200
250
300
350
400
450
500
Bronner Prior Regent
Spor
angi
a nu
mbe
r / m
m2
(a)
10
10.5
11
11.5
12
12.5
Bronner Prior Regent Sp
oran
gium
size
(µm
)
(b) Local Foreign
2.8
2.9
3
3.1
3.2
3.3
3.4
3.5
Bronner Prior Regent
Late
nt p
erio
d (d
pi)
(c)
foreignlocal
-2
-1
0
1
2
-2 -1 0 1 2
PCA2
PCA1
from resistant host
from susceptible host
Pathogen isolates
FST =-0.0012ns
AllP.viticola isolatesweredistincts andwefoundnogeneticdifferentiationbetween
naïveandadaptedisolates
What arethegenes responsibleintheerosion ofresistance ?
• 2016 : Release of the P. viticolagenome sequence (INRA-Pv221)
• Population genomics approach by resequencing P. viticolaisolates
• Design molecular tools
Achievedurable
managementofresistantvarieties
MODELLING- Howtodeployresistance ?:Howdopathogen THVimpacttheerosion ofresistance?
- Howtheconnectivity ofthelandscape affecterosion ofresistance ?Comparestrategies :stacking,cvmixture?
CROPPINGSYSTEM– Combinepractices(fungicides,agronomical)to:§ limit theadaptationofpathogen popscomplete resistance efficacy inorder tosecure theproduction
§ controlthepathogens that arenottargetedbyresistance (i.e.blackrot)
• Plantresistance is apromising solutiontodecreasethedependancy tofungicides.
• R-genes constitute afinite ressource(11locusforPM/14locusforDM).
• Thisressourceis acommon goodthat havetobepreserved since it is limited.
• The« community »hastomanagethis ressourceinanon-selfish manner,ifwe want toavoid thecollapseofthesystem.
Thiswork hasbeenfunded by: