1
news and views 30 NATURE | VOL 413 | 6 SEPTEMBER 2001 | www.nature.com of revisionism, but at least the fundamentals appear to be in place. Andrew Jephcoat and Keith Refson are in the Department of Earth Sciences, University of Oxford, Oxford OX1 3PR, UK. e-mails: [email protected] [email protected] 1. Creager, K. C. J. Geophys. Res. 104, 23127–23139 (1999). 2. Vidale, J. E. & Earle, P. S. Nature 404, 273–275 (2000). 3. Tromp, J. Annu. Rev. Earth Planet. Sci. 29, 47–69 (2001). 4. Steinle-Neumann, G., Stixrude, L. Cohen, R. E. & Gülseren, O. Nature 413, 57–60 (2001). 5. Buffett, B. A. & Wenk, H.-R. Nature 413, 60–63 (2001). 6. Stixrude, L. & Cohen, R. E. Science 267, 1972–1975 (1995). 7. Alfè, D., Price, G. D. & Gillan, M. J. Phys. Rev. B 64, 45123–45139 (2001). filament are distorted into helices by the lateral contacts that hold them together. The authors 1 went on to crystallize MreB and determine its atomic structure. The structure confirms the similarity of MreB to actin, and these particular crystals also pro- vide an amazing bonus: the MreB subunits are already assembled into protofilaments. The crystals thus reveal the structure, at atomic resolution, of the interface between subunits in the protofilaments. This inter- face has not been seen in crystals of actin, and has been deduced only by modelling. So the MreB structure provides the first detailed look at the interface that underlies actin-like filaments. The helical bands seen by light microscopy 2 probably represent a network or a parallel bundle of MreB protofilaments. But how many protofilaments are there across the width of each band? Jones et al. 2 show that there are 8,000 molecules of MreB and 13,000 of Mbl in an average bacterium. Assuming that both of these proteins form protofilaments with the 51-Å spacing observed by van den Ent et al. 1 , this is enough to assemble 41 Ȗm and 66 Ȗm of MreB and Mbl protofilaments, respectively. The bacteria are about 1 Ȗm in diameter, giving a circumference of 3 Ȗm. So, as the helical bands are judged to make one or two turns, they would have a length of 3–6 μm. What this means is that the bands seen by light microscopy might be about 10 proto- filaments wide, which could provide signifi- cant mechanical rigidity. It seems likely that the MreB-based cytoskeleton determines cell shape by gen- erating a force against the membrane. How might it do this? In eukaryotes, a molecular motor known as myosin, which moves along actin tracks, can generate contractile force. But no bacterial motor proteins have been identified, so a similar mechanism seems unlikely to operate in bacteria. A force could instead be generated simply by the filaments’ mechanical rigidity, which would prevent them from bending. A third mecha- nism of force generation in eukaryotes is based on filament assembly: as new subunits are added to the ends of filaments, they push against the membrane. This is the basis for protrusion of the leading edges of amoebae and amoeboid animal cells as they move across a substrate 4 . Perhaps this fundamen- tal process of cell motility, as well as the actin cytoskeleton itself, evolved in bacteria before eukaryotes formed. Harold P. Erickson is in the Department of Cell Biology, Duke University Medical Center, Durham, North Carolina 27710, USA. e-mail: [email protected] 1. van den Ent, F., Amos, L. A. & Löwe, J. Nature 413, 39–44 (2001). 2. Jones, L. J., Carballido-Lopez, R. & Errington, J. Cell 104, 913–922 (2001). 3. Doi, M. et al. J. Bacteriol. 170, 4619–4624 (1988). 4. Pollard, T. D., Blanchoin, L. & Mullins, R. D. Annu. Rev. Biophys. Biomol. Struct. 29, 545–576 (2000). A ll eukaryotic cells, from yeast to plants to animals, have an internal framework called the cytoskeleton. The three types of strut that make up this framework — microtubules, actin filaments and interme- diate filaments — not only provide cells with mechanical support, but also serve as tracks for motor molecules to move along. Bacteria were long thought to lack cytoskeletal fila- ments, suggesting that the cytoskeleton might have evolved after the first primitive eukary- otic cell developed from its bacterial origins. Over the past few years, however, micro- tubules have been traced back to the bacterial protein FtsZ, which forms filaments that are involved in cell division. The origin of actin has been more obscure (and even less is known about the evolution of intermediate filaments). Now, work by van den Ent and colleagues 1 (on page 39 of this issue), along with a paper by Jones and co-workers 2 , shows that the protein MreB forms an actin-like cytoskeleton in bacteria, providing a strong argument that the actin cytoskeleton had largely evolved before eukaryotes developed. Several bacterial proteins are related to actin, as judged by similarities in their amino-acid sequences. But although this ‘homology’ shows that the proteins evolved from a common ancestor, it says nothing about their functions. In fact, these bacterial relatives have widely different functions, most of which are unrelated to the cytoskele- ton. Hexokinase is an enzyme; DnaK is a ‘chaperone’ protein that helps other proteins to fold correctly; and FtsA functions in cell division, although perhaps not as a cyto- skeletal protein. MreB, another bacterial relative of actin, is somehow involved in con- trolling the shape of Escherichia coli cells 3 , but its precise function has been uncertain. If one of these actin homologues is a direct evolutionary precursor of actin, it might be expected to assemble into filaments. The new studies 1,2 show that MreB does just that. Both groups 1,2 noted that, in terms of sequence, MreB is closer to actin than are the other bacterial homologues. Jones et al. 2 used light microscopy to examine MreB and a closely related protein, Mbl, in Bacillus subtilis cells. They found that these proteins form separate helical bands that spiral around inside the cell, just under the mem- brane. They went on to show that depletion of either protein causes defects in cell shape: MreB affects mainly the width, and Mbl the length, of the rod-shaped B. subtilis. Similar- ly, deletion of MreB in E. coli cells results in a marked switch from a rod shape to a sphere 3 . To generalize these findings, Jones et al. scanned the numerous bacterial and archaeal genomes that have been sequenced. (Bacteria and archaea are the two groups of prokary- otes — organisms without membrane- bound nuclei.) They found that prokaryotes with a rod-like, filamentous or helical shape generally have one or more mreB genes, but spherical bacteria (cocci) have none. So the default shape for a bacterium seems to be a sphere; other types of shape are produced by an MreB-based cytoskeleton. The spiral bands seen by light microscopy were suggestive of a cytoskeleton with a fila- mentous substructure, but this needed to be demonstrated. van den Ent et al. 1 do exactly this, and more. They first show that the Ther- motoga maritima MreB protein forms poly- mers in vitro. Electron microscopy revealed that the polymers are thin ‘protofilaments’ (consisting of a single row of MreB proteins assembled end-to-end) that line up side-by- side to form pairs or larger parallel arrays. The spacing between MreB proteins along the protofilaments is 51 Å, close to the 55-Å spacing between subunits in eukaryotic actin. But there is one striking difference. In eukaryotes, two actin protofilaments coil around each other to form a helical actin fila- ment, whereas the MreB protofilaments are straight. Although biologists interested in the cytoskeleton have always thought of the helical structure as fundamental to actin, van den Ent et al. 1 present an intriguing argu- ment that the natural shape of an isolated actin protofilament may in fact be straight, but that the two protofilaments in an actin Cytoskeleton Evolution in bacteria Harold P. Erickson Actin is a major component of the cytoskeleton in yeast, plant and animal cells, but when did it evolve? The discovery of a bacterial protein that forms actin-like filaments suggests an answer. © 2001 Macmillan Magazines Ltd

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30 NATURE | VOL 413 | 6 SEPTEMBER 2001 | www.nature.com

of revisionism, but at least the fundamentalsappear to be in place. ■

Andrew Jephcoat and Keith Refson are in theDepartment of Earth Sciences, University of Oxford,Oxford OX1 3PR, UK. e-mails: [email protected]@earth.ox.ac.uk

1. Creager, K. C. J. Geophys. Res. 104, 23127–23139 (1999).

2. Vidale, J. E. & Earle, P. S. Nature 404, 273–275 (2000).

3. Tromp, J. Annu. Rev. Earth Planet. Sci. 29, 47–69 (2001).

4. Steinle-Neumann, G., Stixrude, L. Cohen, R. E. & Gülseren, O.

Nature 413, 57–60 (2001).

5. Buffett, B. A. & Wenk, H.-R. Nature 413, 60–63 (2001).

6. Stixrude, L. & Cohen, R. E. Science 267, 1972–1975 (1995).

7. Alfè, D., Price, G. D. & Gillan, M. J. Phys. Rev. B 64,45123–45139 (2001).

filament are distorted into helices by the lateral contacts that hold them together.

The authors1 went on to crystallize MreBand determine its atomic structure. Thestructure confirms the similarity of MreB toactin, and these particular crystals also pro-vide an amazing bonus: the MreB subunitsare already assembled into protofilaments.The crystals thus reveal the structure, atatomic resolution, of the interface betweensubunits in the protofilaments. This inter-face has not been seen in crystals of actin,and has been deduced only by modelling. So the MreB structure provides the firstdetailed look at the interface that underliesactin-like filaments.

The helical bands seen by lightmicroscopy2 probably represent a networkor a parallel bundle of MreB protofilaments.But how many protofilaments are thereacross the width of each band? Jones et al.2

show that there are 8,000 molecules of MreBand 13,000 of Mbl in an average bacterium.Assuming that both of these proteins formprotofilaments with the 51-Å spacingobserved by van den Ent et al.1, this is enough to assemble 41 �m and 66 �m ofMreB and Mbl protofilaments, respectively.The bacteria are about 1 �m in diameter,giving a circumference of 3 �m. So, as thehelical bands are judged to make one or twoturns, they would have a length of 3–6 µm.What this means is that the bands seen bylight microscopy might be about 10 proto-filaments wide, which could provide signifi-cant mechanical rigidity.

It seems likely that the MreB-basedcytoskeleton determines cell shape by gen-erating a force against the membrane. Howmight it do this? In eukaryotes, a molecularmotor known as myosin, which moves along actin tracks, can generate contractileforce. But no bacterial motor proteins havebeen identified, so a similar mechanismseems unlikely to operate in bacteria. A forcecould instead be generated simply by the filaments’ mechanical rigidity, which wouldprevent them from bending. A third mecha-nism of force generation in eukaryotes isbased on filament assembly: as new subunitsare added to the ends of filaments, they pushagainst the membrane. This is the basis forprotrusion of the leading edges of amoebaeand amoeboid animal cells as they moveacross a substrate4. Perhaps this fundamen-tal process of cell motility, as well as the actincytoskeleton itself, evolved in bacteria beforeeukaryotes formed. ■

Harold P. Erickson is in the Department of CellBiology, Duke University Medical Center, Durham,North Carolina 27710, USA.e-mail: [email protected]. van den Ent, F., Amos, L. A. & Löwe, J. Nature 413, 39–44 (2001).

2. Jones, L. J., Carballido-Lopez, R. & Errington, J. Cell 104,

913–922 (2001).

3. Doi, M. et al. J. Bacteriol. 170, 4619–4624 (1988).

4. Pollard, T. D., Blanchoin, L. & Mullins, R. D. Annu. Rev.

Biophys. Biomol. Struct. 29, 545–576 (2000).

All eukaryotic cells, from yeast to plants to animals, have an internal frameworkcalled the cytoskeleton. The three types

of strut that make up this framework —microtubules, actin filaments and interme-diate filaments — not only provide cells withmechanical support, but also serve as tracksfor motor molecules to move along. Bacteriawere long thought to lack cytoskeletal fila-ments, suggesting that the cytoskeleton mighthave evolved after the first primitive eukary-otic cell developed from its bacterial origins.

Over the past few years, however, micro-tubules have been traced back to the bacterialprotein FtsZ, which forms filaments that areinvolved in cell division. The origin of actinhas been more obscure (and even less isknown about the evolution of intermediatefilaments). Now, work by van den Ent andcolleagues1 (on page 39 of this issue), alongwith a paper by Jones and co-workers2, showsthat the protein MreB forms an actin-likecytoskeleton in bacteria, providing a strongargument that the actin cytoskeleton hadlargely evolved before eukaryotes developed.

Several bacterial proteins are related toactin, as judged by similarities in theiramino-acid sequences. But although this‘homology’ shows that the proteins evolvedfrom a common ancestor, it says nothingabout their functions. In fact, these bacterialrelatives have widely different functions,most of which are unrelated to the cytoskele-ton. Hexokinase is an enzyme; DnaK is a‘chaperone’ protein that helps other proteinsto fold correctly; and FtsA functions in celldivision, although perhaps not as a cyto-skeletal protein. MreB, another bacterial relative of actin, is somehow involved in con-trolling the shape of Escherichia coli cells3,but its precise function has been uncertain. If one of these actin homologues is a directevolutionary precursor of actin, it might beexpected to assemble into filaments. Thenew studies1,2 show that MreB does just that.

Both groups1,2 noted that, in terms ofsequence, MreB is closer to actin than are theother bacterial homologues. Jones et al.2

used light microscopy to examine MreB and a closely related protein, Mbl, in Bacillus subtilis cells. They found that these proteinsform separate helical bands that spiralaround inside the cell, just under the mem-brane. They went on to show that depletion ofeither protein causes defects in cell shape:MreB affects mainly the width, and Mbl thelength, of the rod-shaped B. subtilis. Similar-ly, deletion of MreB in E. coli cells results in amarked switch from a rod shape to a sphere3.

To generalize these findings, Jones et al.scanned the numerous bacterial and archaealgenomes that have been sequenced. (Bacteriaand archaea are the two groups of prokary-otes — organisms without membrane-bound nuclei.) They found that prokaryoteswith a rod-like, filamentous or helical shapegenerally have one or more mreB genes, butspherical bacteria (cocci) have none. So thedefault shape for a bacterium seems to be asphere; other types of shape are produced by an MreB-based cytoskeleton.

The spiral bands seen by light microscopywere suggestive of a cytoskeleton with a fila-mentous substructure, but this needed to bedemonstrated. van den Ent et al.1 do exactlythis, and more. They first show that the Ther-motoga maritima MreB protein forms poly-mers in vitro. Electron microscopy revealedthat the polymers are thin ‘protofilaments’(consisting of a single row of MreB proteinsassembled end-to-end) that line up side-by-side to form pairs or larger parallel arrays.The spacing between MreB proteins alongthe protofilaments is 51 Å, close to the 55-Åspacing between subunits in eukaryotic actin.

But there is one striking difference. Ineukaryotes, two actin protofilaments coilaround each other to form a helical actin fila-ment, whereas the MreB protofilaments arestraight. Although biologists interested inthe cytoskeleton have always thought of thehelical structure as fundamental to actin, vanden Ent et al.1 present an intriguing argu-ment that the natural shape of an isolatedactin protofilament may in fact be straight,but that the two protofilaments in an actin

Cytoskeleton

Evolution in bacteriaHarold P. Erickson

Actin is a major component of the cytoskeleton in yeast, plant and animalcells, but when did it evolve? The discovery of a bacterial protein thatforms actin-like filaments suggests an answer.

© 2001 Macmillan Magazines Ltd