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DOI: 10.1542/peds.2011-2717; originally published online June 4, 2012;Pediatrics
Melania Manco and Bruno DallapiccolaGenetics of Pediatric Obesity
http://pediatrics.aappublications.org/content/early/2012/05/29/peds.2011-2717
located on the World Wide Web at: The online version of this article, along with updated information and services, is
of Pediatrics. All rights reserved. Print ISSN: 0031-4005. Online ISSN: 1098-4275.Boulevard, Elk Grove Village, Illinois, 60007. Copyright © 2012 by the American Academy published, and trademarked by the American Academy of Pediatrics, 141 Northwest Pointpublication, it has been published continuously since 1948. PEDIATRICS is owned, PEDIATRICS is the official journal of the American Academy of Pediatrics. A monthly
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Genetics of Pediatric Obesity
abstractOnset of obesity has been anticipated at earlier ages, and prevalencehas dramatically increased worldwide over the past decades. Epi-demic obesity is mainly attributable to modern lifestyle, but familystudies prove the significant role of genes in the individual’s predis-position to obesity. Advances in genotyping technologies have raisedgreat hope and expectations that genetic testing will pave the way topersonalized medicine and that complex traits such as obesity will beprevented even before birth. In the presence of the pressing offer ofdirect-to-consumer genetic testing services from private companiesto estimate the individual’s risk for complex phenotypes includingobesity, the present review offers pediatricians an update of the stateof the art on genomics obesity in childhood. Discrepancies with re-spect to genomics of adult obesity are discussed. After an appraisal offindings from genome-wide association studies in pediatric popula-tions, the rare variant–common disease hypothesis, the theoreticalsoil for next-generation sequencing techniques, is discussed as op-posite to the common disease–common variant hypothesis. Next-generation sequencing techniques are expected to fill the gap of“missing heritability” of obesity, identifying rare variants associatedwith the trait and clarifying the role of epigenetics in its heritability.Pediatric obesity emerges as a complex phenotype, modulated byunique gene–environment interactions that occur in periods of lifeand are “permissive” for the programming of adult obesity. With theadvent of next-generation sequencing techniques and advances inthe field of exposomics, sensitive and specific tools to predict theobesity risk as early as possible are the challenge for the next decade.Pediatrics 2012;130:1–11
AUTHORS: Melania Manco, MD, PhD, and BrunoDallapiccola, MD
Scientific Directorate, “Bambino Gesù” Pediatric Hospital, IstitutoDi Ricovero e Cura a Carattere Scientifico, Rome, Italy
KEY WORDSchildhood, genome-wide association study, heritability, obesity,metabolic programming
ABBREVIATIONSALSPAC—Avon Longitudinal Study of Parents and ChildrenGWAS—genome-wide association studyPA—physical activitySNP—single-nucleotide polymorphism
Dr Manco conceived and drafted the manuscript; Dr Dallapiccolarevised it critically for important intellectual content; and bothauthors approved the final version of the draft and take publicresponsibility for its content.
www.pediatrics.org/cgi/doi/10.1542/peds.2011-2717
doi:10.1542/peds.2011-2717
Accepted for publication Mar 2, 2012
Address correspondence to Melania Manco, MD, PhD, FACN,Scientific Directorate, Bambino Gesù Pediatric Hospital, PiazzaSanOnofrio 4, 00165, Rome, Italy. E-mail: [email protected]
PEDIATRICS (ISSN Numbers: Print, 0031-4005; Online, 1098-4275).
Copyright © 2012 by the American Academy of Pediatrics
FINANCIAL DISCLOSURE: The authors have indicated they haveno financial relationships relevant to this article to disclose.
FUNDING: No external funding.
PEDIATRICS Volume 130, Number 1, July 2012 1
STATE-OF-THE-ART REVIEW ARTICLE
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Prevalence of overweight and obesityhas dramatically increased worldwidein children and adolescents over thepast 3 decades. Recent estimates sug-gest that 1 child in 2 in the United Statesand 1 in 3 in Europe is overweight.1
Therefore, childhood obesity has turnedinto a major health problem in Westerncountries, despite policies targeted atreducing its prevalence.1
Obesity is a complex trait that stemsfrom a complicated network of con-tributory components, encompassinggenomic (see glossary in Table 1) andenvironmental factors, which in ag-gregate increase the probability ofdisease. Sedentary behaviors and high-calorie diets are major environmentalfactors driving epidemic obesity.
Studies in twins, nontwin siblings, andadoptees have shown that genetic com-ponents contribute from 40% to 70% tothe interindividual variation in common
obesity.2 With no doubt, the obese phe-notype runs prevalently in families, butmost of the causative genes are still un-discovered. Findings from genome-wideassociation studies (GWAS) explain avery few of the obesity heritability. Themost recent meta-analysis of GWASdata identified 18 new loci associatedwith BMI, thus setting the number ofgenes likely associated with obesityup to 42.3 It is disappointing that eachof these alleles explained only a verysmall portion of the interindividual vari-ability in BMI, contributing to an increasein BMI of ∼0.17 kg/m2.3 Shortcomingsof GWAS in explaining such heritabilityare often referred to as the “missingheritability.”
As estimated by GWAS, the genetic com-ponent of obesity encompasses the smallcontribution of many single-nucleotidepolymorphisms (SNPs; Table 1). Apartfrom common variants, rare and private
variants determine jointly the humangenetic variation of BMI, but they can-not be identified by current GWAS. Asfar as the role of copy number variantsis concerned, there is no evidence sup-porting their role in explaining someof the BMI variation. Evidence is alsolacking on gene-by-gene or, more spe-cifically, variant-by-variant interactions(a phenomenon also termed “epista-sis”) that contribute to BMI variability.Indeed, analyses to detect epistaticinteractions suffer from a substantiallyincreased multiple testing burdens thathamper detection and interpretation. Todate, these investigations have focusedonly on those SNPs with significantmarginal effects,4 but future collabo-rative studies should provide evidenceon gene-by-gene interactions.
The cumulative risk to develop the dis-ease relies not only on the individual’sgenotype, but also on nongenetic deter-minants, mainly epigenetic (Table 1) andenvironmental factors.
As to environmental factors, the notionof “environment” has been evolving be-yond the classic idea of parental andnonparental influences on the child’slifestyle, mood, and behavior. Maternalinfluences on the child’s phenotypeoriginate before birth (in the intra-uterine environment) and continueduring the first 6 years of life,5 whenBMI trajectories are programmed bythe mother’s genetic, hormonal, and be-havioral factors.5,6 Intrauterine and earlypostnatal life are “permissive” windowswhen maternal and nonmaternal envi-ronmental factors will up or down mod-ulate the phenotypic expression of thechild’s genotype.6 Similarly, age of adi-posity rebound and puberty are “per-missive" periods.7
Genetics of pediatric obesity is pecu-liar with respect to genetics of adultobesity.8,9 The joint effects of genesand environment change sizably frombirth toward adulthood and are affectedby sex-limited effects.8 Two phases of
TABLE 1 Glossary
Copy number variants(CNVs)
They are variants that change the number of base pairs in the genome.
Less common variants Alleles with a minor allele frequency between 1% and 5%Effect size The increase in risk that is conferred by a given causal variantsEpigenetics The study of heritable changes in gene expression that are not due to changes
in DNA sequence. Epigenetic modifications include changes in the localizedor global density of DNAmethylation (also termed “methylome”), incorrecthistone modifications, or altered distribution or function of chromatin-modifying proteins that, in turn, lead to aberrant gene expression. Threekinds of genomic targets are susceptible to gene-expression changesowing to environmental perturbations of epigenetic marks: the promoterregion of certain housekeeping genes; genes with metastable epialleles,which are loci particularly sensible to environmental factors; andimprinted genes.
Epistasis The phenomenon in which the effect of a gene or variant on a trait is notindependent of the effect on the trait of another gene or variant.
Exome The proportion of the genome that is translated into proteins (1% of thewhole genome).
Exposome It is the sum of all the individual’s exposures in his/her lifetime and estimateshow those exposures relate to disease.
Exposomics The sciencewhich aims at studying association among factors, the exposome,which can influence the individual’s health.
Heritability It measures the fraction of the total phenotypic variance of a quantitative traitattributable to genes in a specified environment.
Minor allele frequency(MAF)
The proportion of alleles at a locus, that consists of the less frequent alleles,and ranges from 0% to 50%.
Private variants Alleles restricted to probands and immediate relatives.Rare variants Alleles with a minor allele frequency ,1%Single-nucleotidepolymorphisms (SNPs)
Single base changes in the DNA
Very common variants Alleles with a minor allele frequency between 5% and 50%
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infancy, 0.5 to 1.5 years and 5 to 6 years,are considered as 2 particularly crit-ical periods regarding BMI develop-ment, whose direction is crucially fixedduring those time periods.5 Afterward,sex-limited genetic effects will addcomplexity to the dynamic picture ofdifferential genetic expression of obe-sity as a function of age.8 The sets ofgenes contributing to BMI variation arenot identical in men and women.9 Twinstudies demonstrated that sex-specificeffects modulate genetically drivengrowth patterns7 and influences ofshared and nonshared environmentalfactors on BMI heritability.10 These ef-fects become evident when fat massdistribution and hormonal milieu dif-ferentiate between the 2 genders.8
Recognitionofage- andgender-dependentgene effects is pivotal to explain someof the inconsistencies in GWAS findingsbetween young and adult individuals.
The growing inventory of human geneticvariation is facilitating an understandingof why susceptibility to common dis-eases varies among individuals andpopulations. It represents the rationaleto the development of “personalizedmedicine.” Individuals, when presentedwith information about their personal-ized, gene-based "disease risk profile"seem to better adapt their lifestyles soas to reduce their chances of developingconditions for which they have an “in-creased” risk.11 In the presence of thepressing offer of direct-to-consumergenetic testing services from privatecompanies to estimate the individual’srisk for complex phenotypes, ie, obesity,caution must be paid in interpretingresults of such tests.
COMMON DISEASE–COMMONVARIANT HYPOTHESIS AND GWASIN PEDIATRIC POPULATIONS
Based on the common disease–commonvariant hypothesis, which posits thatmultiple common alleles contribute tothe disease risk, the approach to genetic
studies of obesity has entailed preva-lently GWAS.
In GWAS, larger and larger samples ofcases and controls have been geno-typed for hundreds of thousands ofcommon variants, typically 300 000 to1 000 000 of SNPs with the aim ofdetecting the largest number of at riskvariants.12 The allele or genotype fre-quencies have been evaluated fordifferences between groups or for cor-relations with continuous traits. Despitesuch apparent simplicity, results of GWASmay be subject to multiple-hypothesistesting because of typing a very largenumber of alleles. They need correctionto exclude random association attrib-utable to multiple testing, which canturn spurious associations out. Draw-backs to GWAS include also the need forreplication of results in independentstudy populations and complementa-tion with robust mechanistic studies toelucidate the biological mechanisms re-sponsible for the genetic association.13
Despite shortcomings, GWAS have pro-vided robust evidence for a role of somevariants, particularly FTO, MC4R, andTMEM18 loci, in the development ofobesity. Table 2 reports genes so farassociated with pediatric obesity, theiracronyms, and functions, wheneverknown.
In the study by Willer et al14 the first,analysis was conducted in the AvonLongitudinal Study of Parents and Chil-dren (ALSPAC) study sample (N = 4951with BMI information at age 11) andconfirmed significant associations ofvariants in/near FTO, MC4R, TMEM18,KCTD15, and GNPDA2 with BMI. Succes-sively, data were replicated in the cohortof obese children (N = 1038) from theSevere Childhood Onset Obesity ProjectUnited Kingdom cohort and an increasedrisk of extreme childhood obesity wasrevealed for the BMI-increasing allelesnear TMEM18, GNPDA2, NEGR1.14
In the European Youth Heart Study(1252 children and 790 adolescents),
associations of 15 variants (NEGR1,SEC16B, LYPLAL1, TMEM18, ETV5,GNPDA2,TFAP2B, MSRA, BDNF, MTCH2, BCDIN3D,NRXN3, SH2B1, FTO, MC4R, and KCTD15)with BMIwere similar to those observedin adults.15 In a meta-analysis of datafrom 13 071 children and adolescentssignificant associations with BMI werefound for 9 of 13 variants and the nearTMEM18 variant had the strongest ef-fect. Effect sizes for BMI tended to bemore pronounced for variants in/nearSEC16, TMEM18, and KCTD15 in childrenand adolescents than in adults.16
FTO
The association between FTO polymor-phisms and obesity-related traits (ie,BMI, adiposity, circulating leptin, energyintake, impaired control of energy bal-ance, satiety sensitivity, and food re-sponsiveness) is one of the most robustassociation reported for complex traitsand has been firmly established in chil-dren.15–36 Nevertheless, functional rele-vance of FTO for the pathogenesis ofobesity remains elusive.17,18,21,25–31
It is worth mentioning that this associa-tion shows clearly sex-limited effects8,9
and an age-dependent expression inthat gene expression changes devel-opmentally.15,19,24,29,34,36 At birth, no as-sociation exists between FTO variantsand birth weight,15,17,18,32,33 but it appearssoon within the first weeks of life34 andpersists through the passage fromchildhood into adolescence.17,19,29,35 Inthis regard, Hebebrand37 hypothesizedthat the intrauterine environment hasa strong influence on anthropometricvariables of newborns and infants,thus tempering the effect of FTO var-iants on the infant ’s body weight,whereas, successively at 2 to 3 years,the effect of the genetic makeup be-comes discernible. The associationstrengthens from 4 years of age onwardover the lifespan.15,38 BMI developmentduring infancy can influence later theadult BMI.29 In a Dutch cohort of children
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TABLE 2 Genes Near/in Which Variants Have Been Associated With Increased BMI and Pediatric Populations
Nearest Genes(Acronym)
Locus AssociationWith BMI or BW
Major Cohort Studiesand Meta-analyses
Functions (Whenever It Is Known)/Sites of Expression
ADCY583 3q13.2-q21 BW Meta-analysis83 Adenylate cyclase 5. The gene encodes amemberof themembrane-boundadenylyl cyclase enzymes. Adenylyl cyclasesmediate G protein-coupledreceptor signaling through the synthesis of the second messengercAMP. Activity of theencodedprotein is stimulatedby theGsa subunit ofG protein-coupled receptors and is inhibited by protein kinase A,calcium, and Gi a subunits. Single-nucleotide polymorphisms in thisgene may be associated with low BW and type 2 diabetes. Alternatively,spliced transcript variants that encode different isoforms have beenobserved for this gene.
BDNF16,49,59,60,80 11p4 BMI/BW EYHS16 Brain-derived neurotrophic factor. The protein encoded by this gene isa member of the nerve growth factor family. It is induced by corticalneurons, and is necessary for survival of striatal neurons in the brain.Expression of this gene is reduced in patients with Alzheimer’s andHuntington disease. This gene may play a role in the regulation ofstress response and in the biology of mood disorders The gene hasa complex pattern of expression in the brain. Its high expression in theventromedial hypothalamus is regulated by nutritional state andMC4R signaling.
Obeldicks intervention59
Beijing Child and AdolescentMetabolic Syndrome Study60
ABC80
CCNL183 3q25.31 BW Meta-analysis83 Cyclin L1 protein kinase binding. Nothing is currently known about themechanism behind the association with obesity.
ETV516,49 3q27 BMI EYHS16 Ets variant gene 5. It is a transcription factor that plays a role indevelopment and cancer, highly expressed in brain and pancreas. Itstranscript levels are tightly regulatedduringhuman fetal development.
FAIM260 12q13 BMI Beijing Child and AdolescentMetabolic Syndrome Study60
Fas apoptotic inhibitorymolecule 2. Nothing is currently known about themechanism behind the association with obesity.
FTO14–38,59,63,64,84 16q12 BMI/BW ALSPAC and SCOOP-UK14 Fatmass-andobesity-associatedgene.Thisgene isanuclearproteinof theAlkB related non-heme iron and 2-oxoglutarate-dependent oxygenasesuperfamilybut theexactphysiologic functionof thisgene isnotknown.Studies in mice and humans indicate a role in nervous andcardiovascularsystemsandastrongassociationwithBMI, obesity risk,and type2diabetes.Thegene is involved inprocessessuchas fattyacidsmetabolism, and highly expressed in the hypothalamic nuclei.
EYHS16
Northern Finland BirthCohort 196629
GINI and LISA24
National Longitudinal Studyon Adolescent Health8,9
Obeldicks intervention59
GENESIS and GENDAI63,64
Meta-analysis84
GNPDA214,16,49 4p12 BMI ALSPAC and SCOOP-UK14 EYHS16 Glucosamine-6-phosphate deaminase 2. It catalyzes the reversibleconversion of D-glucosamine-6-phosphate into D-fructose-6-phosphateand ammonium.
KCNJ1180 11p15.1 BW ABC80 Potassiuminwardlyrectifyingchannel,subfamilyJ,member11Potassiumchannels are present inmostmammalian cells, where they participatein a wide range of physiologic responses. The protein encoded by thisgene is an integral membrane protein and inward-rectifier–typepotassium channel.
KCTD1514,16,49 19q13 BMI ALSPAC and SCOOP-UK14 Potassium channel tetramerization domain containing 15 gene. It isexpressed in the pituitary and carries out sulfation of carbohydrates,which confers highly specific functions on glycoproteins, glycolipids,and proteoglycans, pivotal for signal transduction and embryonicdevelopment.
EYHS16
MCR414,16,39–52,59,60 18q21 BMI ALSPAC and SCOOP-UK14 Melanocortin receptor 4. The preopiomelanocortin-deriveda-melanocyte-stimulating hormone from the arcuate nucleus binds toMCR4 in the paraventricular nucleus of the hypothalamus and isresponsible for increase in energy intake and decrease in food intake.
EYHS16
Meta-analysis studies48–50
Obeldicks intervention59
Beijing Child and AdolescentMetabolic Syndrome Study60
MTCH216,84 11p11.2 BMI/BW EYHS16 Mitochondrial carrier homolog 2. Nothing is currently known about themechanism behind the association with obesity.Meta-analysis84
NEGR118,49 1p31 BMI ALSPAC and SCOOP-UK18 Neuronalgrowth regulator-1gene. Theencodedprotein isamemberof theimmunoglobulin superfamily. Through its function as cell adhesionmolecule, the protein participates in the regulation of neuriteoutgrowth in the developing brain.
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followed with yearly collection of dataon anthropometry from birth to age 7and on anthropometry, body composi-tion, leptin concentrations, physicalactivity (PA), hours watching television,and attitude toward eating from ages12 to 17, researchers observed thatat 17 years, 20% of the children wereoverweight/obese and 88% of theoverweight/obese children had the Aallele in contrast to 45% of the leanchildren.36 The A allele carriers hadhigher ratio of fat mass to height. TheFTO allele was associated with higherBMI, fat ratio, and leptin concentrationsfrom the age of 12 years, whereas the
associations showed a dip at ages 13 to14 years, probably because of the pu-bertal hormonal storm. The associa-tion became stronger at age 17 years.Such results were in keeping withreports from the German Infant Nutri-tional Intervention, the Lifestyle-relatedfactors on the Immune System and theDevelopment of Allergies in Childhoodbirth cohorts,24 and a twin study.19 Inthe German Infant Nutritional Interven-tion and Lifestyle-related factors on theImmune System and the Development ofAllergies in Childhood birth cohorts,2732 term newborns were genotyped(rs1558902 or rs9935401) and followed
from birth up to age 6 years. BMI tra-jectories varied by genotype status anddifferences become recognizable againfrom the age of 3 years onward. In 3582twin pairs, Haworth et al19 reporteda progressively larger heritability es-timate of BMI over time and, again, anage-dependent stronger association forthe common variant rs9939609 of FTOwith BMI, which became significant asof age 4.
As to mechanisms of the associationbetween FTO variants and fatness, ina sample of 2726 Scottish children (age4–10 years), the variant rs9939609 wasassociated with both adiposity and food
TABLE 2 Continued
Nearest Genes(Acronym)
Locus AssociationWith BMI or BW
Major Cohort Studiesand Meta-analyses
Functions (Whenever It Is Known)/Sites of Expression
PFKP80 10p15.3-p15.2 BW ABC80 ThePFKPgeneencodes theplatelet isoformofphosphofructokinase (PFK).PFK catalyzes the irreversible conversion of fructose 6-phosphate tofructose 1,6-bisphosphate and is a key regulatory enzyme in glycolysis.
PTER80 10p12 BW ABC80 Phosphotriesterase. Nothing is currently known about the mechanismbehind the association with obesity.
SDCCAG859 1q43 BMI Obeldicks intervention59 Serologically defined colon cancer antigen 8. This gene encodesa centrosome-associated protein. This protein may be involved inorganizing thecentrosomeduring interphaseandmitosis.Mutations inthis gene are associated with retinal-renal ciliopathy.
SEC16B16 1q25 BMI EYHS16 Located in intron 15 of the Mammalian Homolog of Saccharomycescerevisiae Sec1 gene. The protein encoded is required for organizationof transitional endoplasmic reticulum sites and protein export.
SH2B116,80 16p11.2 BMI EYHS16 Scr-homology-2 (SH2) domain containing putative adapter protein 1. Thisgene encodes a member of the SH2 domain. The encoded proteinmediates activation of various kinases andmay function in cytokine (ie,leptin) and growth factor receptor signaling and cellulartransformation.
ABC80
TFAP2B16 6p12 BMI EYHS16 Transcription factor AP-2 b or activating enhancer-binding protein 2 b isa member of the AP-2 family of transcription factors. AP-2 proteinsform homo- or heterodimerswith other AP-2 familymembers and bindspecific DNA sequences. They are thought to stimulate cellproliferation and suppress terminal differentiation of specific celltypes during embryonic development. The encoded transcriptionfactor is expressed in adipose tissue. Its overexpression leads toincreased lipid accumulation and decreased expression ofadiponectin. Thus, TFAP2B may have an effect on fat accumulation atmultiple sites.
TMEM1814,16,49 2p25 BMI ALSPAC and SCOOP-UK14 Transmembrane protein 18. The gene is highly conserved among speciesand expressed in the brain, particularly at the nucleus site.EYHS16
TNJK/MSRA16,59 8p23.1 BMI EYHS16 This protein is ubiquitous and highly conserved. It carries out theenzymatic reduction ofmethionine sulfoxide tomethionine. Humanandanimal studies have shown the highest levels of expression in kidneyand nervous tissue. Its proposed function is the repair of oxidativedamage to proteins to restore biological activity. Three transcriptvariants encoding different isoforms have been found for this gene.
Obeldicks intervention59
Functions and sites of expression are reported as in the Reference Sequence (RefSeq) collection.90 BW, body weight; ABC, Auckland Birth weight Collaborative study; EYHS, European YouthHeart Study; GINI, German Infant Nutritional Intervention; LISA, Lifestyle-related factors on the Immune System and the Development of Allergies in Childhood; SCOOP-UK, Severe ChildhoodObesity Onset Project-United Kingdom; SGA, small-for-gestational birth weight.
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intake, whereas no association wasfound with energy expenditure in asubgroup of 97 subjects.21 Scuteri et al25
suggested that the FTO variants mighthave a role in the control of food intakeand food choice, because children car-rying FTO variants are hyperphagic andprefer energy-dense foods. A more re-cent study in 655 European adolescentsprovided evidence for an association ofthe minor A allele of the FTO rs9939609with increased levels of leptin, andthis association was independent ofadiposity.30
MC4R in Common and MonogenicObesity
The melanocortin pathway plays a piv-otal role in the central regulation ofenergy homeostasis. MC4R deficiencyresulting from the disruption of one orboth MC4R alleles represents the mostcommonmonogenic form of early-onsetobesity, affecting 4% to∼6% of severelyobese French and British populations,respectively.39–42 More than 90 differentobesity-associated mutations of MC4R,most of which are missense mutations,have been reported so far.43 Phenotypeof carriers varies considerably.43,44 Ho-mozygous individuals typically exhibit amore severe phenotype than heterozy-gous do, but penetrance and expres-sivity may vary in affected families, withvariable age of onset and severity ofobesity.45
Children carrying MC4R mutationspresent with early-onset severe obesity,persistent food-seeking behavior from6 months of age, increased fat and leanmasses, hyperinsulinemia and hyper-phagia, which ameliorate with aging,higher stature, increased growth ve-locity, and older bone age (ie, exceed-ing the chronological age by 1–5 years)than matched obese controls.46,47
Findings from GWAS have proved thatvariants in/near MC4R contribute fre-quently to complex obesity, with a non-negligible size effect in the general
population. The increasing BMI size ef-fect ranged from 18% to 31% for car-riers of rs2229616 variant, whereascarriers of rs52820871 had ∼20% re-duced risk of obesity.48 A recent meta-analysis of data from 13 004 youngEuropeans demonstrated that eachadditional risk allele of the near/inMCR4 locus increases BMI by ∼7% SD.16
No association was found betweenvariants in/near MCR4 gene and birthweight48 and/or early weight gain.49,50
On the contrary, the association withBMI becomes significant by age 6 to 7years.38
TMEM18
The TMEM18 gene might be powerfullyinvolved in the modulation of energyhomeostasis, because it is widely ex-pressed and detected in the majority ofneurons in all major brain regions.51
Interestingly, variants near/in TMEM18were significantly associated with BMIin adult3,14 and pediatric populations.51–53
The most recent case-control study of502 obese and 525 control Swedishchildren (age 6–20 years) found a sig-nificant association of rs6548238 andrs756131 variants with obesity. In thisstudy, the odds ratio for the locus nearTMEM18 was as high as that reportedfor the FTO locus. Interestingly, homo-zygous carriers of the major allelesshowed a trend for lower birth weightand length.51 Variants near/in TMEM18were also significantly associated withweight gain in infancy49 and early-onset obesity.53
GENE-BY-PA AND DIETINTERACTIONS
The obesity-increasing effect of somepolymorphisms may be attenuated inindividuals who are physically active.54
Variants in FTO have been the mostfrequently analyzed with respect to gene-by-PA interactions, but results have beencontradictory.31,55–58 In population-basedcohorts of 4762 Finnish adolescents, low
PA was found to accentuate the effect ofFTO variant (rs1421085), whereas noclear interactions with PA were seen in3167 French adults,55 in a population ofDanish children (rs7566605) stratifiedfor PA,56 in young European and AfricanAmerican patients (rs9939609) in 1978,57
and in 19 268 children from a meta-analysis of 9 studies.58 The latter meta-analysis demonstrated that PA attenu-ates the influence of FTO variants onobesity risk by 30% in adults.58
No significant interaction was ob-served as well between M4CR variant(rs17782313) and PA in the afore-mentioned Finnish cohort.55 The inter-actions of 10 SNPs at 5 loci (in/near FTO,MC4R, TMEM 18, SDCCAG8, and TNJK/MSRA) with 1-year lifestyle interventionwas explored in 401 overweight chil-dren and adolescents (“Obeldicks” in-tervention). Homozygous carriers ofobesity risk alleles of SDCCAG8 lost lessweight than heterozygous or homozy-gous carriers of other alleles. Suchfindings were not confirmed in adults.59
In the Beijing Child and AdolescentMetabolic Syndrome Study, the associ-ations between FAIM2, NPC1, FTO, MCR4,BDNF, and GNPDA2 and obesity risk wasmodulated by PA. A higher risk of obesitywas observed in children who carriedthe high-risk alleles of the 6 SNPs andengaged in sedentary behavior$2 hoursper day outside of school or participatedin low or moderate PA.60
Heterogeneity between study in geneticarchitecture and environmental factors,differences in methods of measuring PA,and accuracy of the phenotype mea-surements make it difficult to studyinteractions between gene variants andPA. Differences with reports in adultsmay be due tomore intensive PA in youngand age-related effects.61
In relation to nutritional effects, no in-teraction was found between FTO allele(rs9939609) and dietary energy den-sity in the ALSPAC study.62 On the con-trary, fat intake modified the age- and
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gender-specific association of thePro12Ala polymorphism with adiposityin preschoolers and periadolescents(data from the growth, exercise, andNutrition Epidemiologic Study, GENESIS;and the Gene diet Attica Investiga-tion on childhood obesity, GENDAI,respectively).63,64 In children, an age-dependent and gender-limited gene-by-diet effect was found at the age of 48months when the gene-by-diet effectdifferentiated in the 2 genders.64
Ideally, future GWA studies should beperformed in large study samples withsuperior characterization of lifestylefactors to take into account gene-by-environment interactions and thus fa-cilitate thedetectionof low-impact genevariants, of which there are expected tobe numerous variants with importantbut modest effects on obesity.
RARE VARIANT–COMMON DISEASEHYPOTHESIS ANDNEXT-GENERATION SEQUENCING
As opposite to the common variant–common disease hypothesis, the rarevariant–common disease hypothesissuggests that rare variants contributesignificantly to complex traits. Com-mon and rare variants are expected toexert their effects on adiposity by fol-lowing a gradient ranging from negli-gible to severe along a continuum. In allprobability, the obese phenotype is theconsequence of additive effects andinteractions among multiple alleleswith varying magnitude of effect, var-iants acting as modifier alleles, non-coding RNA, microRNA, splice variants,and regulatory elements in trans bywhich the genome governs various bi-ological processes.
Indeed, based on today’s knowledge,only 1% of the human genome is tran-scribed into mRNA and translated intoproteins. An additional 0.5% serves astemplate for noncoding RNA and theregulatory regions that control geneexpression. Functions of the remaining
98.5% of the genome remain un-known.12,65
GWAS, as they have been designed dodate, are unable to detect rare andprivate variants and to provide in-formation on the other genomic ele-ments that modulate the phenotypicexpression.12 On the contrary, rare andprivate variants might be identified bymassive genotyping or deep sequenc-ing in large families. Novel techniquesthat sequence millions of DNA strandsin parallel and at low cost have beendeveloped. These new technologies arecollectively referred to as the next-generation sequencing techniques. Inthe next few years, a rapid shift fromwhole exome (Table 1) to whole ge-nome sequencing as the desirable ap-proach to identify obesity-associatedvariants is expected.
EPIGENETICS ANDDEVELOPMENTAL ORIGIN OFOBESITY
Understanding the functional contentof the genome necessitates knowledgebeyond the complete genome sequence,including also information on epigenome(Table 1). Strong evidence is accumu-lating that the environment can altergene expression and influence theindividual’s phenotype mostly by mod-ifying the epigenome.66 Interest in epi-genetics has been increasing in thepast few years, because it may providea molecular mechanism for metabolicprogramming that links genes, prenatalenvironment, intrauterine growth, andsubsequent susceptibility to disease.
Epigenetic changes occur most com-monly during gestation, neonatal de-velopment, and puberty. They seem tocarry “memory” of early life experi-ences, triggering reversible, but alsoheritable disease susceptibility in laterlife. Indeed, they can be heritable acrosscell divisions in somatic cells and po-tentially inherited across several gen-eration (“epimutations”).6,66
Studies in animal models supportstrongly the concept that experi-ences during the intrauterine life canmodulate the phenotypes of progenyindependently of its genotype. In par-ticular, maternal nutrition67–70 andhormonal cues71 can influence the fe-tus’ gene expression by altering theextent of DNA methylation in genepromoters and histone acetylation inthe chromatin structure. This phenom-enon continues immediately after thebirth. Early modulation of the child’sphenotype may occur mostly through2 mechanisms that encompass theeffects of both thematernal epigenomeand the epigenetic programming of theplacenta in response to nutrient avail-ability and hormonal cues (recentlyrevised in ref 6). Epigenetic program-ming of the placenta, in turn, will resultin structural and functional changes,72
which can up- or downmodulate nutri-ent transport to the fetus and, hence, tofetal growth restriction or vice versa toovergrowth.
However, evidence in humans of mech-anisms by which epigenetics affect de-velopment of complex traits such asobesity and how such changes passacross generations are limited to a fewclinical observations.73–76 In particular,the Dutch famine birth cohort repre-sents a unique “natural” experience ofheritability of epigenetic changes acrossgenerations due to a condition of ma-ternal undernutrition.76 Very recently,Godfrey et al75 reported the first evi-dence that methylation status of genepromoters in utero affects related phe-notypes later in the child’s development.The authors first measured the meth-ylation status of CpGs in the promotersof 78 candidate genes in DNA extractedfrom umbilical cord tissue obtainedat birth in children who were laterassessed for adiposity at age 9 years.Measurements of perinatal DNA meth-ylation were related to adiposity inlater childhood and to information on
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mother’s diet during pregnancy. Asso-ciations of genes (retinoid X receptor-a,RXRA; endothelial nitric oxide synthase,eNOS; superoxide dismutase-1, SOD1;interleukin-8, IL8; and phosphoinositide-3-kinase, catalytic,d-polypeptide,PI3KCD)that had associations of comparablestrength between childhood body com-position and both methylation of overallgene promoters and of individual olig-omers, were replicated in a secondand independent group of children.Methylation status of the promoter re-gion of RXRA correlated strongly in the 2cohorts and was inversely associatedwith maternal carbohydrate intake inthe first months of pregnancy.
LOW BIRTH WEIGHT ANDINCREASED RISK FOR OBESITY
Advances in thefieldofepigeneticsshednew light on old concepts and hypoth-eses. Conditions of metabolic disad-vantage associated with intrauterinegrowth retardation and low birth weight,a surrogate marker of such metabolicdisadvantage, are significantly associ-ated with adult obesity, diabetes, andcardiovascular disease as demon-strated by a number of epidemiologicaland clinical studies (reviewed in ref 6).Barker77 first hypothesized and demon-strated the disadvantaged conditionsof intrauterine growth that result ina small-for-gestational birth weight,as having significant effects on a per-son’s weight over a lifetime. Even so,birth weight can depend on the indi-vidual’s predisposing genotype, be-cause small-for-gestational-birth weightbirths tend to cluster in families and torecur in successive generations.78,79
The Auckland Birth weight Collabo-rative 80 and the ALSPAC49 studiesidentified common risk alleles associ-ated with both low birth weight andobesity. The Auckland Birth weightCollaborative study explored the asso-ciation of birth weight with 54 SNPs incandidate genes formerly associated
with obesity. Genetic variation in KCNJ11,BDNF, PFKP, PTER, and SEC16B (Table 2)were associated with a small weight atbirth.81 The ALSPAC investigated asso-ciations of 10 different risk alleles forobesity (in/near FTO; MC4R, TMEM18,GNPDA2, KCTD15, NEGR1, BDNF, andETV5; Table 2) in 7146 children, whoseanthropometrics were assessed frombirth to age 11 years. An obesity–risk-allele score was derived for each child.The score was poorly associated withbirth weight, but had an apparentlymuch larger positive effect on earlyinfancy weight gain, hence, suggestingthat some variants, although they areeffective against the newborn’s failureto thrive, conversely make the infantprone to develop obesity.49
Ameta-analysis82 of 6 GWAS, performedin 10 623 Europeans from pregnancy-birth cohorts, identified a significantassociation between 2 variants (ADCY5and CCNL1) never implicated beforewith fetal growth and birth weight. Theassociations were independent of ma-ternal intrauterine environment. Amorerecent meta-analysis of obesity sus-ceptibility loci in 28 219 individualsconfirmed an association only forMTCH2and FTO with lower and higher birthweight, respectively. The associations,however, were no longer statisticallysignificant after correction for multi-ple testing.83
ENVIRONMENT AND EXPOSOMICS
Understanding heritability of obesityrequires a deeper knowledge of thecomplex dynamic between gene-by-geneandgene-by-environment interactions.81
The extent of these associations variessignificantly along the different periodsof the human life.16,84
Studies on sibling and twin pairs haveput attention on shared and nonsharedenvironmental factors, mostly withinthe family, to tryanswering thequestionof how much genetics contributes tothe complex trait. Environmental factors
within the familyhave includedparentaleating and physical exercise behaviors,mental constructs, socioeconomical sta-tus, and other shared experiences ofsiblings and twins. In this light, twinstudies allowed the estimate of the extentto which the family environment makesfamilymembersmoresimilar thanwouldbe expected from their genetic relat-edness (the shared-environment effect)and dissecting those nongenetic effectsthat come from environmental factorsthat are unique to each person (the non–shared-environment effects).85 However,because twins experience more com-monality in indirect genetic effects thanfull siblings because they share both thestable and idiosyncratic parts of thehome environment, but full siblingsshare only the common component, twinstudies can have inflated heritabilityof obesity.86 The effect of the homeenvironment clearly diminishes whenchildren grow older and become moreindependent to make their own choices,which will reflect the effect of new spe-cific environmental pressures.87 Per-ception of all these pressures may differin each individual and in twins as well,hence, contributing significantly to thephenotype variance. Siblings generallyattend the same school, but members ofa sibling pair perceive their school andclassroom experience differently, evenidentical twins in the same class room.87
Thus, the question becomeswhy siblingsand twins are so different despite thecommon genetic background.88 Under-standing how the individual’s exposuresto the environmental factors (alsotermed as “exposome”) interactwith its unique characteristics, suchas its genetic makeup, resulting inthe obese phenotype is pivotal toestimate heritability.89 “Omics” tech-niques and deep sequencing providea huge amount of data, then, analyzedby data-mining techniques, with theaim of finding statistical associationsbetween exposome, effects of expo-sures, and genetics.
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CONCLUSIONS
Results from GWAS have strength-ened the idea that the genetic heri-tage of obesity is strong, but still awide gap exists between heritability,
as demonstrated by family studies,and variance of body fatness, as esti-
mated by numbers and odd ratios of
identified risk alleles. Although some
genes have been found for pediatric
obesity, there is still a lot more to belearned, and the future involves look-
ing at rare variants, gene-by-gene and
gene-by-environment interactions, and
epigenetic factors.
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