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High Throughput Plant Phenotyping at
the National Plant Phenomics Centre
Dr. Marie Neal et al.
15th May 2014
Talk Outline
About the NPPC
Where we are
What facilities we have
Implications of high-throughput phenotyping
Examples of Our Work
How you can use our facilities and work with us
Our Facility
Our Facility
LemnaTec platform for the systematic large scale, high throughput phenotyping
of diversity and mapping populations in crops and model species. 3 conveyor
connected glasshouse compartments with 850 RFID carriages
Our Facility
5 Imaging chambers:
RGB (biomass)
Root NIR and VIS and Laser
Thermal IR (stomata function)
NIR (water content)
Our Facility
Temperature controlled Glasshouse and heat
map produced from 21 distributed sensors.
Our Facility
Watering station, and graph illustrating water regulation
Also nutrient and spraying cabins
Phenotyping at different
scales at IBERS
Nutrient flow (hydroponics) UAV field phenotyping e.g. Forest health
Molecular analysis - HiSeq, Mass spec, FTIR/NIR,
Micro Raman, Marvin Grain Analyser
Photo-physiology – PAMFluorometer, chlorophyll
Imager, Gas analyser
High throughput Phenotyping
Very large amounts of data
We can't look at it all
Aim to provide a set of Automated techniques, moving from
Manual to computer assisted to fully automated analysis
Application pipeline in development
Tell us things we can't measure manually
Images from the chambers
Root RGB Blue light photo-chemical reactions
Multi plant top view RGB – Model plants and crops for
biomass, rate of growth over time 3D depth maps of grass
Experiments
Experiments
Experiments
Access via Website
Access via Website
Summary
About the NPPC – our smarthouse and other
Phenotyping facilities
Our High-throughput phenotyping data -
Images and environmental data gives us
Very Large amounts of data which we can't look at
manually
Illustrated some example experiments
How you can use our facilities and work with us
NPPC team
Contact: Marie Neal
man15@aber.ac.uk
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