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Post glactial colonization

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Page 1: Post glactial colonization
Page 2: Post glactial colonization

IntroductionNorway spruce Picea abies is a broadly distributed

European conifer tree

Intensively studied by means of fossil records to infer the location of glacial refugia and the main routes of postglacial colonization

In this study they combine genetic data against fossil pollen data as a template

Variation assessed in two minisatellite regions of the mitochondrial nad 1 gene, among the 369 populations (4876 trees)

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Glacial & Interglacial CyclesRepeated glacial and interglacial cycles are believed to have

played an important role in shaping genetic diversity

Fossil pollen record imply that the entire northern range was colonized from a single glacial refugium in European Russia

The timing and mode of colonization by Norway spruce as revealed by fossil pollen shows both similarities and differences between the northern and southern range

Similarities westward colonization during early Holocene 9000 ybp

Differences westward colonization continued in the northern range not in the south

Difference may have been caused by differences in climate, topography, and presence of other competitive tree sp’s

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Populations of Picea abies analysed for mitochondrial minisatellite variation

Green shaded areas represent the naturalrange of Norway spruce

Light green areas indicate zones where Norway spruce populations of different origin came into contact during the Holocene

Grey shading illustratesthe topography; the darker the tone, the higher the altitude

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Molecular MarkersStudies of nuclear DNA markers have revealed a clear

separation between the northern and southern populations

Nuclear and chDNA markers shown that there are differences among the southern populations but with non-sufficient resolution to locate genetic boundaries among different refugial expansions or postglacial colonization

Exceptionally mtDNA markers provided sufficient resolution

In this study, researchers apply the same mtDNA marker as used in two earlier, geographically more restricted studies

(Gugerli et al. 2001; Sperisen et al. 2001)

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mtDNA markerThis marker comprises a

fragment of the second intergenic spacer of nad1 gene which includes 2 highly variable minisatellites

Variation in the minisatellite-flanking sequences separates northern populations from the southern

Copy number variation in the two minisatellites estimates diversity and population dynamics regionally or locally

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Core Idea of the Study

In areas where a clear relationship between range expansion inferred from fossil pollen and genetic structure could be established,

genetic change in space and time is analysed by relating genetic diversity with the estimated age of first spruce occurrence and with geographic distance to the putative source area of Holocene range expansion

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Phylogenetic tree for the 28 haplotypes of the mt nad 1 gene in Picea abies

Stepwise Mutation Model

Haplotypes are indicated according their size in bp

Grey boxesinsertions/deletions of 1–69 bp

Blue boxesinsertions/deletions of the 34-

bp repeat

Red boxesinsertions/deletions of the 32-

bp repeat

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Population-genetic analyses

To investigate patterns of genetic subdivision, they applied spatial analysis of molecular variance (samova) and a clustering approach based on principal component analysis (PCA)

samova based on a computer-generated procedure that aims to maximize the proportion of total genetic variance due to differences between groups of populations (Fct)

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Population-genetic analyses

PCA in combination with clustering was used to delineate genetically similar populations based solely on population means and variances without using any geographic information

Genetic relationship between groups delineated by samova or PCA was inferred from a minimum -evolution (ME) tree based on pairwise differentiation among groups (Fct) estimated by analysis of molecular variance (amova)

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Geographic distribution of groups of Picea abies populations outlined by SAMOVA

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Geographic distribution of groups of Picea abies populations outlined by PCA clustering

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Combined maps of genetic groups and fossil pollen for the inference of Holocene expansion regions in Picea

abies

fossil pollen mapsamova pop. groups for the southern range shown on the fossil pollen map

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Combined maps of genetic groups and fossil pollen for the inference of Holocene expansion regions in Picea

abies

PCA pop. groups for the southern range shown on the fossil pollen map

PCA pop. groups for the northern range shown on the fossil pollen map

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Combined maps of fossil pollen and average within-population gene diversity (hs)

Most regions of early Holocene spruce expansion were characterized by high gene diversity (hs)

Exceptions were parts of West Carpathians and of the eastern Alps, and the south-west Bulgarian mountains

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Combined maps of fossil pollen and average genetic differentiation (Gst)

In contrast, genetic differentiation (Gst) was low in most regions with early Holocene

A high Gst was found in the southwest Bulgarian mountains

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Concluding RemarksCombined genetic and pollen data suggest that during

the last glaciation, Norway spruce (Picea abies) survived in at least seven refugial areas from which it expanded during the Holocene

This study demonstrates that, in contrast to general expectation, within-population diversity is low in some refugial areas

The maintenance of within-population diversity observed in parts of the southern range is probably the consequence of the mixing of colonization routes

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ConclusionDeep divergence observed between the

mitochondriallineages of the northern and the southern range

Demonstrating that surviving populations in the two regions were separated for a substantial period of time possibly over several glacial–interglacial cycles

Demographic changes associated with quaternary climatic fluctuations and natural selection are the most important factors shaping genetic variation, both in refugial and in expanding populations

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