IBP Data Management Status

IBP DM Team Presenter – Arllet M. Portugal

October 2014

Major Activities

Migration of databases to IBDB v2 Documentation of Other Traits Establishment of other crop databases Development of Data Import Tool with

Leafnode for loading data Re-organization of the crop DB scripts in

preparation for different kinds of crop DB installers

Migration of Databases

Evaluation data from Maize Finder were migrated to IBDB v2 maize crop DB

Australia-India Molecular Breeding Project

(AIMBP) Database (Project central and Univ of Sydney local)

Sorghum RI phenotyping data (P114 in 2010 & P118 in 2011) reloaded

Cassava RI Database managed by NRCRI

Tropical Legumes 1 – Beans (28 datasets) Tropical Legumes 1 - Chickpea (around 15

datasets) re-loaded by Prasad Peteti ICRISAT Groundnut – migration of 12

international trials & 14 post-rainy datasets from Agrobase to IBDB v2

Migration of Databases

Migration of databases

Rice RI database – updated by Ibnou Dieng Wheat RI, China data loaded using the Data

Import Wheat RI, India (1 Excel file for 2011-2012 and 5

excel files for 2012-2013 with multiple sheets ) – in the process of loading

MAGIC Population S4 Phenotype– loaded using

the Data Import

Documentation of Other Traits

Complementary Traits for the following crops: Cassava, chickpea, common bean, cowpea Groundnut, maize, sorghum, soybean, wheat

Traits from Crop Ontology for the following crops Sweet potato, potato, yam pigeon pea, barley

Establishment of Other Crop Databases

Crop databases are already created for Lentil Soybean Pearl Millet

Crop databases to be available for Sweet Potato Potato Barley Pigeon Pea Yam

Data Import Tool A tool to import historical dataset

Re-organization of the Crop DB scripts

One script for Common terms used by all crops which consist of traits common to all crops and terms needed by BMS

Script for crop specific traits Script for germplasm information from the CG

center Script for evaluation data from CG centers Script for genotyping data generated through

GCP projects and IBP genotyping service

Other IBP DM Team Members

Graham McLaren Clarissa Pimentel Julian Pietragalla Ma. Teresa Ulat Corina Habito Fernando Rojas Rowena Valerio