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MusabasePhenotyping Workflow
Demo
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IITA Arusha - IITA Sendusu- NARO Kawanda September 2016Guillaume Bauchet, Mueller lab
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Day 1
9:00 Welcome and Introductions9:30 Intro: Musabase Overview and Manual10:00 Intro: Setting up Accounts and Logins10:30 Break10:45 Basics: Trial and Accession Search11:00 Basics: The Search Wizard and Saving to Lists11:30 Basics: Working with Lists12:00 Lunch1:30 Basics: Adding Accessions2:00 Basics: Adding Pedigrees2:30 Basics: Adding Images3:00 Break3:15 Design Tools: Creating Crosses3:45 Design Tools: Designing and Organizing Trials4:30 Design Tools: Uploading Trials5:00 Session Ends
New Trial Design
Fieldbook Creation
Traits List Creation
RecordPhenotypes
Import and Setup Trial in
Fieldbook App.
&
Upload Phenotypes
Historic Phenotype Uploads
PhenotypeAnalysis
Crossing
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For authentication:User: sgn
Password: eggplant
musabase-test.sgn.cornell.edu
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musabase-test.sgn.cornell.edu
To practice creating trials
and phenotyping, you will need
to sign up for a submitter account
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Add Accessions
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Add Accessions
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Add Accessions
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Add Accessions
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Add Accessions
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Create a Cross
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Create a Cross
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Create a Cross
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Create a Cross
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Add the progeny to a list
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To list manager
Allows you to manipulate a
set of Accessions,
Traits,Trials,
Phenotypes,
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List Manager
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View lists
Create a trial
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Create a trial
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Create a trial
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View trial
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View trial
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Phenotyping: Create a field book layout file
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Phenotyping: Create a list of traits
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Phenotyping: Create a list of traits
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Ontology is being modified
Wizard is not updated
Phenotyping: Manage Fieldbook app tools
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Phenotyping: Manage Fieldbook app tools
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Phenotyping: Create a trait file
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Phenotyping: Download Files
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The Android Fieldbook
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Using the Android Fieldbook: transfer files
Copy layout file to field_import
Copy trait file to trait folder
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Using the Android Fieldbook: Import layout
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Using the Android Fieldbook: Import traits
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Using the Android Fieldbook: Import traits
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Using the Android Fieldbook: Export phenotype file
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Phenotyping: Download Files
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Upload exported phenotype
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Upload exported phenotype
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Upload exported phenotype
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Upload exported phenotype
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View uploaded phenotype
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Uploading Historic Trials
Historic Trial upload
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Historic Trial upload
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Historic Trial upload
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Historic Trial upload
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Historic Trial upload
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File Format Used
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Lukas Mueller
AlexOgbonna
BryanEllerbrock
NaamaMenda
IsaakTecle
NickMorales
AKNOWLEDGEMENTS
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Contact us!
USER MANUAL
CONTACT SGN TEAM
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Contact us!
