1
Inclusive Market-Oriented Development (IMOD) – our approach to bringing prosperity in the drylands. ICRISAT is a member of the CGIAR Consortium. 1 International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India 2 CGIAR Generation Challenge Programme, c/o CIMMYT, Mexico DF, Mexico 3 The University of Georgia, Tifton, USA; *Address for correspondence: [email protected] Three elite peanut cultivars improved for rust resistance by introgressing a QTL genomic region through marker- assisted backcrossing (MABC) approach QTL introgressed through MABC approach into the genetic background of three elite cultivars (ICGV 91114, JL 24 and TAG 24) using four linked markers (Theor Appl Genet 2013, under review) A total of 81 promising introgression lines identified with high rust resistance i.e., with disease score of <2.0 on 1.0-9.0 scale At present, promising lines are grown in replication for yield assessment and superior lines will be selected for multilocation evaluation in target areas of SAT region Improved varieties with enhanced disease resistance will provide better yield and higher income, and, sustain the livelihood of resource poor farmers of the semi-arid regions of the world Leaf rust, caused by Puccinia arachidis, is one of the major devastating diseases in peanut (Arachis hypogaea L.). After validating a major QTL (82.62% phenotypic variation) for resistance to rust, it was introgressed in three susceptible varieties namely ICGV 91114, JL 24 and TAG 24 using GPBD 4 variety as donor through MABC approach. A total of 81 introgression lines developed from 2 to 3 backcrosses with high level of rust resistance were selected with disease score of <2.0 on 1.0-9.0 scale as par the donor. Screening of 43 promising lines with 13 markers present on the carrier linkage group showed introgression of only target genomic region from resistant donor in 11 lines. Multi-location field evaluation of most promising lines should provide entries for possible release of the improved varieties with enhanced disease resistance that will eventually provide better yield and higher income to resource poor farmers of the semi-arid regions of the world. Further, this study highlights the utility of four markers for improving rust resistance in any peanut molecular breeding programme of the world. Abstract Acknowledgements Summary Rajeev K Varshney 1,2 *, Manish K Pandey 1,3 , Pasupuleti Janila 1 , Shyam N Nigam 1 , Hari Sudhini 1 , MVC Gowda 1 , Manda Sriswathi 1 , T Radhakrishnan 1 , P Nagesh 1 This work has been undertaken as part of the CGIAR Research Program on Grain Legumes. Financial support from Bill & Melinda Gates Foundation through CGIAR Generation Challenge Programme (GCP) is gratefully acknowledged. Thanks are also due to Bryan J Moss and V Papaiah for their help. Disease screening during rainy 2012 ICGV 91114 ICGV 91114 + QTL GPBD 4 JL 24 JL 24 + Rust QTL Replicated yield assessment of improved lines, rainy 2013 Disease symptom at harvesting stage Post rainy 2008-09 Disease screening of BC 2 F 3 progenies and BC 3 F 2 plants, selection of 75 homozygous BC 3 F 2 plants based on MAS Screening of homozygous resistant BC 3 F 3 progenies for agronomic performance and seed multiplication from BC 2 F 4 plants Rainy 2011 Post rainy 2011-12 Rainy 2012 Marker assisted introgression of rust QTL Foreground markers: IPAHM103, GM2079, GM1536, GM2301 Post rainy 2010-11 183 plants screened for MAS, 53 plants selected 186 BC 3 F 1 and 498 BC 2 F 2 plants screened for MAS, 55 heterozygous BC 3 F 1 & 158 homozygous BC 2 F 2 plants selected Crosses made between GPBD 4 with ICGV 91114, JL 24 and TAG 24 Rainy 2009 True hybrids selected based on SSR markers Post rainy 2009-10 186 plants screened for MAS, 52 plants selected Selfing Rainy 2010 Selfing Selfing Selfing ICGV 91114, JL 24, TAG 24 GPBD 4 F 1 BC 1 F 1 BC 2 F 1 BC 3 F 1 BC 2 F 2 BC 3 F 2 BC 2 F 3 BC 3 F 3 BC 2 F 4 BC 3 F 4 BC 3 F 5 x A major QTL contributing up to 82.96% PVE for rust resistance identified and linked SSR markers (IPAHM103, GM2079, GM1536 and GM2301) validated (Theor Appl Genet 2010, 121:971-98; Mol Breed 2012, 32:773-788)

Three elite peanut cultivars improved for rust resistance by introgressing a QTL genomic region through marker- assisted backcrossing (MABC) approach

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Inclusive Market-Oriented Development (IMOD) – our approach to bringing prosperity in the drylands. ICRISAT is a member of the CGIAR Consortium.

1International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India 2CGIAR Generation Challenge Programme, c/o CIMMYT, Mexico DF, Mexico 3The University of Georgia, Tifton, USA; *Address for correspondence: [email protected]

Three elite peanut cultivars improved for rust resistance

by introgressing a QTL genomic region through marker-

assisted backcrossing (MABC) approach

QTL introgressed through MABC approach into the genetic background of three elite cultivars (ICGV 91114, JL 24 and TAG 24)

using four linked markers (Theor Appl Genet 2013, under review)

A total of 81 promising introgression lines identified with high rust resistance i.e., with disease score of <2.0 on 1.0-9.0 scale

At present, promising lines are grown in replication for yield assessment and superior lines will be selected for multilocation

evaluation in target areas of SAT region

Improved varieties with enhanced disease resistance will provide better yield and higher income, and, sustain the livelihood of

resource poor farmers of the semi-arid regions of the world

Leaf rust, caused by Puccinia arachidis, is one of the major devastating diseases in peanut (Arachis hypogaea L.). After validating a

major QTL (82.62% phenotypic variation) for resistance to rust, it was introgressed in three susceptible varieties namely ICGV 91114, JL 24 and TAG

24 using GPBD 4 variety as donor through MABC approach. A total of 81 introgression lines developed from 2 to 3 backcrosses with high level of rust

resistance were selected with disease score of <2.0 on 1.0-9.0 scale as par the donor. Screening of 43 promising lines with 13 markers present on the

carrier linkage group showed introgression of only target genomic region from resistant donor in 11 lines. Multi-location field evaluation of most

promising lines should provide entries for possible release of the improved varieties with enhanced disease resistance that will eventually provide

better yield and higher income to resource poor farmers of the semi-arid regions of the world. Further, this study highlights the utility of four markers

for improving rust resistance in any peanut molecular breeding programme of the world.

Abstract

Acknowledgements

Summary

Rajeev K Varshney1,2*, Manish K Pandey1,3, Pasupuleti Janila1, Shyam N Nigam1, Hari Sudhini1,

MVC Gowda1, Manda Sriswathi1, T Radhakrishnan1, P Nagesh1

This work has been undertaken as part of the CGIAR Research Program on Grain Legumes. Financial

support from Bill & Melinda Gates Foundation through CGIAR Generation Challenge Programme

(GCP) is gratefully acknowledged. Thanks are also due to Bryan J Moss and V Papaiah for their help.

Disease screening during rainy 2012

ICGV 91114 ICGV 91114 + QTL GPBD 4

JL 24 JL 24 + Rust QTL

Replicated yield assessment of improved lines, rainy 2013

Disease symptom at harvesting stage

Post rainy 2008-09

Disease screening of BC2F3 progenies

and BC3F2 plants, selection of 75

homozygous BC3F2 plants based on MAS

Screening of homozygous resistant BC3F3

progenies for agronomic performance and

seed multiplication from BC2F4 plants

Rainy 2011

Post rainy 2011-12

Rainy 2012

Marker assisted introgression of rust QTL

Fo

reg

rou

nd

mark

ers

: IP

AH

M103

,

GM

207

9,

GM

153

6,

GM

230

1

Post rainy 2010-11

183 plants screened for MAS, 53 plants

selected

186 BC3F1 and 498 BC2F2 plants screened

for MAS, 55 heterozygous BC3F1 &

158 homozygous BC2F2 plants selected

Crosses made between GPBD 4 with

ICGV 91114, JL 24 and TAG 24

Rainy 2009 True hybrids selected based on SSR

markers

Post rainy 2009-10

186 plants screened for MAS, 52 plants

selected

Selfing Rainy 2010

Selfing

Selfing

Selfing

ICGV 91114,

JL 24,

TAG 24

GPBD 4

F1

BC1F1

BC2F1

BC3F1 BC2F2

BC3F2 BC2F3

BC3F3 BC2F4

BC3F4 BC3F5

x

A major QTL contributing up to 82.96% PVE for rust resistance identified and linked SSR markers (IPAHM103,

GM2079, GM1536 and GM2301) validated (Theor Appl Genet 2010, 121:971-98; Mol Breed 2012, 32:773-788)