ARTICLE IN PRESS
1616-5047/$ - see front m
doi:10.1016/j.mambio.20
�Corresponding autho
E-mail address: erod
www.elsevier.de/mambio
ORIGINAL INVESTIGATION
A new record and an evaluation of the phylogenetic relationships
of Abrothrix olivaceus markhami (Rodentia: Sigmodontinae)
Enrique Rodrıguez-Serranoa,�, Cristian E. Hernandeza,b, R. Eduardo Palmaa
aLaboratorio de Biologıa Evolutiva, Departamento de Ecologıa, Facultad de Ciencias Biologicas and Center for Advanced Studies in
Ecology & Biodiversity, Pontificia Universidad Catolica de Chile, Casilla 114-D, Santiago 6513677, ChilebLaboratorio de Diversidad Molecular y Filoinformatica, Departamento de Zoologıa, Universidad de Concepcion and Patagonian
Ecosystems Research Center (CIEP), Casilla 160-C, Concepcion, Chile
Received 3 January 2007; accepted 2 October 2007
Abstract
Recent phylogenetic studies of the subfamily of cricetid rodents (Sigmodntinae) have validated the taxonomicclassification at the tribal level of the Andean Clade. It is possible that some endemic species from Patagonian SouthAmerica are part of this new tribe, but previous studies have not evaluated this hypothesis due to the difficulty ofobtaining samples. In this study, we evaluate the phylogenetic relationships of Akodon markhami (Pine, 1973), a speciesendemic to the Chilean Patagonia, using individuals recently captured at the type locality of this taxon. Our resultsindicate that this form of Akodon corresponds to a subspecies of Abrothrix olivaceus, and should be incorporated intothe Andean Clade as a geographic race of this widely distributed species on the South American continent. Based on amolecular clock calibration, we dated the origin of this geographic race during the last glacial cycles of the Quaternary,as the result of a vicariant process.r 2007 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.
key words: Abrothrix olivaceus; Akodon markhami; Andean Clade; Biogeography; Chile
Introduction
During the last decade there has been a boom in thenumber of studies regarding the evolutionary history ofsigmodontine rodents (Rodentia: Cricetidae), princi-pally due to taxonomic problems with the numerousspecies in this subfamily, and their implications regard-ing the origin of South American rodents (Smith andPatton 1993, 1999; Engel et al. 1998; D’Elıa 2003).Many of these studies have validated the supragenericgroupings using phylogenetic analyses. Furthermore,some genera belonging to tribes with wide distributions
atter r 2007 Deutsche Gesellschaft fur Saugetierku
07.10.003
r.
[email protected] (E. Rodrıguez-Serrano).
in South America have been regrouped into new taxa(Smith and Patton 1999). Such is the case for theAndean Clade, an informal tribal grouping whichincludes a group of genera traditionally assigned to theAkodontini tribe (Smith and Patton 1993; D’Elıa 2003).The genera that comprise this new tribe are: Abrothrix
Waterhouse 1837; Chelemys Thomas 1916; Geoxus
Thomas 1919; Notiomys Thomas 1890 and Pearsonomys
Patterson 1992. A notable characteristic of the AndeanClade is its restricted geographic distribution, whichcomprises the central-southern region of the Andesmountain range and adjacent low-lands (Reig 1987;Smith and Patton 1993). Together with their valuablesystematic discovery of the Andean Clade, Smith andPatton (1993, 1999) also provide evidence that other
nde. Published by Elsevier GmbH. All rights reserved.
Mamm. biol. 73 (2008) 309–317
ARTICLE IN PRESSE. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317310
species inhabiting southern South America, such asAbrothrix sanborni and Akodon markhami, may alsobelong to the Andean Clade. Nevertheless, to date thesespecies have not been included in comparative analyses,due to the complexity of obtaining samples.
Of the two species mentioned above, the least studiedis Akodon markhami. This species is endemic to Chile,and was described in a brief article by Pine (1973), basedon two individuals captured in the locality of PuertoEden, Isla Wellington (491090S; 741270W) by B.J.Markham 1971. This locality corresponds to an islandnear the continent, situated in front of the southern icefields, in Magallanes Region, Chile (XII region; Fig. 1).The captured specimens were originally assigned asAbrothrix olivaceus brachiotis (Waterhouse 1837), byMarkham (1971). However, Pine (1973) noted distin-guishing morphological characters (i.e. total length, furcolor, curvature of the skull, shape of the rostrum),sustaining these specimens as Akodon markhami.
The zone currently inhabited by Akodon markhami
corresponds to islands in the Patagonian channels. Thiszone was especially affected by the glacier cycles of theQuaternary, and was almost totally covered by ice
Fig. 1. Sampled localities where specimens of Abrothrix
olivaceus markhami were collected in the Patagonian Channels
of southern Chile (Isla Wellington and Penınsula Exmouth).
(1) Corresponds to the type locality in Puerto Eden and (2) is
Caleta Level, a continental locality that allows us to expand
the range of A. o. markhami.
during the last glacial maximum (Hollin and Schilling1981; Clapperton 1994). For this reason, Smith andPatton (1993) proposed Akodon markhami, as a recentinvader to this insular region, which should, therefore,not be genetically different from ancestral populationson the continent. If this is so, this species would notconstitute a species of the genus Akodon, rather it wouldbe a subspecies of the continental species whichcurrently inhabits the area, such as the species in thegenus Abrothrix (A. olivaceus; A. longipilis). Here weevaluate this hypothesis, as well as provide a new recordof the species proposed by Pine (1973) as Akodon
markhami, from individuals captured at the type locality35 years after the original description of the species.Furthermore, we utilize a molecular phylogeneticapproach, based on the analysis of nucleotide sequencesof the mitochondrial gene, Cytochrome b and Hiper-variable Domain I, to evaluate the species status ofthis taxon, and to test the hypothesis regarding theorigin of Akodon markhami using a calibration of themolecular clock.
Material and methods
Samples and study area
Between January 27 and February 2, 2006, we collected and
measured eight specimens of Akodon markhami from two
localities in the Patagonian channels (one of which is the type
locality; Fig. 1, Table 2). The specimens were deposited in the
Coleccion de Flora y Fauna Profesor Patricio Sanchez Reyes
(SSUC), Departamento de Ecologıa, at the Pontificia Uni-
versidad Catolica de Chile, Santiago, Chile. Skins, skulls,
tissues, and data associated with each specimen were cross-
referenced directly to each voucher specimen and stored in the
above-mentioned University Collection. We followed the
guidelines of the American Society of Mammalogists during
the collection and handling of the animals used in this study
(Animal Care and Use Committee 1998). Three of the collected
individuals of A. markhami were used in the molecular
analyses. Cytochrome b nucleotide sequences from the other
species of the Andean Clade (Abrothrix olivaceus; A. andinus;
A. jelskii; A. longipilis; Chelemys macronyx; C. megalonyx;
Geoxus valdivianus; Notiomys edwarsii; Pearsonomys annectens),
and the Akodontini tribe (Akodon albiventer; A. torques), were
obtained from GenBank (Table 2).
DNA extraction and sequence analysis
DNA was extracted from frozen liver samples treated with
the WizardsGenomic DNA Purification Kit (PROMEGAs,
Madison, Wisconsin). We amplified the complete cytochrome
b gene of the mtDNA, via polymerase chain reaction (PCR).
Amplification was performed using the forward primer
L14724a (Anderson et al. 1981) and the reverse primer
H15767 (Edwards et al. 1991). Amplifications were carried
out following the thermal protocol outlined by Smith and
ARTICLE IN PRESSE. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317 311
Patton (1993). Double-stranded PCR products were purified
with the Qiaquiks Purification kit (Qiagen Inc., Valencia,
California). Cycle sequencing (Murray, 1989) was performed
using the Big Dye Terminator kit (Perkin–Elmer, Norwalk,
Connecticut) in an ABI Prism 310 automated sequencer
(Applied Biosystems, Foster City, California). Sequence data
were aligned using the CLUSTAL X program (Thompson
et al. 1997) with the default values for all alignment parameters,
with posterior adjustments made by eye. These sequences are
available in GenBank according to the accession numbers
provided in Table 2.
Phylogenetic analyses
Phylogenetic analyses were initially performed using the
Maximum Likelihood (ML) criterion in PAUP* version
4.0b10 software (Swofford 2002). For this analysis, the
parameters of the best model were obtained using Modeltest
3.7 software (Posada and Crandall 1998). The Akaike
Information Criterion (AIC; Akaike 1974) indicated that the
optimal model was Transversional Model+Invariable Sites+
Gamma (TVM+I+G; �lnL ¼ 6143.9497, AIC ¼
12305.8994). The base frequencies of the selected model were:
freqA ¼ 0.3132, freqC ¼ 0.3334, freqG ¼ 0.0953, freqT ¼
0.2581; and the substitution rates were: [A�C] ¼ 1.6002,
[A�G] ¼ 22.4814, [A�T] ¼ 3.0752, [C�G] ¼ 0.7748, [C�T] ¼
22.4814, [G�T] ¼ 1.0000. The proportion of invariable sites
was I ¼ 0.5484 and the Gamma distribution shape parameter
was G ¼ 1.6557.
The best tree was obtained utilizing a heuristic search, and
the confidence values of the clades were evaluated by
performing 1000 non-parametric bootstrap replicates (Felsen-
stein 1985) with a heuristic search in each replicate. We rooted
the tree using Phyllotis xanthopygus and Wiedomys pyrrhorhi-
nus as outgroups, since these species constitute part of the
sister taxa (Phyllotini and Wiedomyini) of the Andean Clade
(D’Elıa 2003; Table 2). Following these initial analyses, we
conducted Maximum Parsimony analysis using only parsi-
mony informative characters. All of these characters were
analyzed as unordered and unweighted. The most parsimo-
nious tree was found through a heuristic search with the
Stepwise Addition algorithm setting at ‘‘random’’ with 10
random additions, and the Branch Swapping method of Tree
Bisection-Reconnection. Finally, we used the Neighbor-Join-
ing clustering algorithm to obtain a distance tree based on the
best-fit model TVM+I+G, found using the ML criterion.
Both the Maximum Parsimony and Neighbor-Joining topol-
ogies were supported through bootstrapping using 1000 non-
parametric bootstrap replicates (Felsenstein 1985), with a
heuristic search in each replicate.
Once the specific identity of the focal lineage was established
(see Results), we performed additional analysis of intraspecific
genealogical relationships. Based on a recent phylogeographic
study on Abrothrix olivaceus (Rodrıguez-Serrano et al. 2006),
we used the Hypervariable Domain I (HDI) of the mtDNA
Control Region, including the same individuals of
A. markhami used for Cyt b (subspecies: A. o. olivaceus;
A. o. pencanus; A. o. brachiotis and A. o. xanthorhinus; see
Table 2). The molecular protocols were based on Rodrıguez-
Serrano et al. (2006). A similar phylogenetic reconstruction was
performed for the second mtDNA matrix of HDI. The optimal
model was Tamura-Nei Model+Invariable Sites (TrN+I;
�lnL ¼ 885.7170, AIC ¼ 1781.4341). The base frequencies of
the selected model were: freqA ¼ 0.3209, freqC ¼ 0.2110,
freqG ¼ 0.0931, freqT ¼ 0.3751; and the substitution rates
were: [A�C] ¼ 1.0000, [A�G] ¼ 4.3652, [A�T] ¼ 1.0000,
[C�G] ¼ 1.0000, [C�T] ¼ 12.8216, [G�T] ¼ 1.0000. The pro-
portion of invariable sites was I ¼ 0.7671. This molecular
marker evolves twice as fast as Cytochrome b, and has been
shown to be informative at the intraspecific level (Rodrıguez-
Serrano et al. 2006).
To assess the timing of the cladogenetic event which
originated Akodon markhami, we first evaluated the hypothesis
of a Generalized molecular clock using the likelihood ratio test
(LRT). This test evaluated whether our ML phylogenetic tree
based on cyt b reconstruction fits a generalized substitution
rate (Felsenstein 1981). In our LRT statistic, H0 represents the
likelihood score associated with the null hypothesis (clock-like
model), where the rate of evolution is homogeneous among all
branches in the phylogeny; H1 represents the likelihood score
associated with the alternative model (non-clock model). For
the LRT we used the w2 statistic with a significance level of
po0.05. Since our results did not support the generalized
molecular clock model (LR ¼ 46.7476, df ¼ 24, p ¼ 0.005), we
used a molecular clock with the Local Rate Deformation
Method (LRDM; Jobb 2005), in TREEFINDER software
version June 2007 (Jobb 2007). As the calibration point for the
molecular clock, we utilized the division of Akodon/Necromys,
which was dated at 3.5 MYBP (Pardinas et al. 2002). For the
Hypervariable Domain I tree the same likelihood test was
performed (LRT ¼ 29.43478, df ¼ 13, p ¼ 0.005). The point
of calibration was set by the recent phylogeographic analysis
of small mammals (Palma et al. 2005). We used the average
time of divergence between Abrothrix andinus and A. olivaceus
(1 MYA sensu Palma et al. 2005). The LRDM was performed
in TREEFINDER.
Results and discussion
Standard measurements and skull morphology
The standard measurements of the A. markhami
specimens captured during this expedition are presentedin Table 1. The values of these measurements are slightlygreater than those known for Abrothrix olivaceus
(Mann, 1978; Redford and Eisenberg, 1992). TheA. markhami skulls presented several distinctive characters,in particular an elongated rostrum and a laterallyinflated cranial cavity, as previously reported by Pine(1973), as well as a notorious interorbital widening ofthe nasal region (Fig. 2). Two of these characters are notas evident in A. olivaceus, since this species presents acranial cavity with rounded edges, as well as a taperednasal bone (Mann 1978). Nevertheless, the interorbitalwidening in A. olivaceus is very apparent, resemblingthat observed in A. markhami. Furthermore, thesubspecies A. o. brachiotis (inhabitant of the temperate
ARTICLE IN PRESS
Table 1. Standard measurement for the eight specimens of Abrothrix olivaceus markhami presented in mm
Voucher number Total length Tail length Hind foot length Ear length Weight (g)
SSUC-MaOO329/ER30* 172 72 26 18 30
SSUC-MaOO330/ER34* 157 70 24 14 20
SSUC-MaOO333/ER37 188 79 26 17 30
SSUC-MaOO334/ER38 195 81 27 16 40
SSUC-MaOO331/ER39 201 88 29 18 40
SSUC-MaOO335/ER40 198 84 27 16 42
SSUC-MaOO332/ER41 192 84 26 18 50
SSUC-MaOO336/ER43 210 94 27 20 50
Mean Value 189 82 26 17 38
Table 2. Museum catalogue numbers of the species included in the phylogenetic reconstruction
DNA
segment
Species or
subspecies
Voucher GenBank
access
number
Locality
Cyt b Abrothrix olivaceus
olivaceus
FMNH132309b AF027305 Chile; Coquimbo; Coquimbo
FMNH132348b AF027306 Chile; Valparaıso; Valparaıso
A. o. brachiotis FMNH131621 AF027307 Chile; Los Lagos; Bahıa Mansa
MVZ183257 AF027309 Chile; Valdivia; Fundo San Martın
FMNH131733 AF027311 Chile; Los Lagos; Puerto Octay
FMNH131468 AF297882 Chile; Aysen; Lago Riesco
A. o. xanthorhinus FMNH132591 AF297896 Chile; Aysen; Coyhaique
FMNH129877 AF297897 Chile; Aysen; Balmaceda
FMNH132593 AF297902 Chile; Aysen; Chile Chico
A. o. markhami. SSUC-MaOO329/ER30 EF118754 Chile; Magallanes; Isla Wellington; Puerto Eden
SSUC-MaOO335/ER40 EF118756 Chile; Magallanes; Isla Wellington; Caleta Malaca
SSUC-MaOO333/ER37 EF118755 Chile; Magallanes; Campos de Hielo Sur; Caleta
Level
Abrothrix andinus MVZ174065 AF108671 Peru; Arequipa; Sumbay
Cyt b Abrothrix jelskii MVZ173073 AY275114 Peru; Puno; Ollachea
Abrothrix longipilis MVZ154494 U03530 Argentina; Rıo Negro; Bariloche
Akodon albiventer NK96060 AY341042 Chile, Tarapaca; Suricayo
Akodon azarae GD 327 AY702964 Uruguay; San Jose; Kiyu
Akodon torques MVZ171720 M35700 Peru; Cusco; Paucartambo
Chelemys macronyx MVZ155800 U03533 Argentina; Rıo Negro; Bariloche
Chelemys
megalonyx
NK109253 DQ309559 Chile; Coquimbo; Parque Nacional Fray Jorge
Geoxus valdivianus MVZ154601 U03531 Argentina; Rıo Negro; Bariloche
Necromys temchuki UP22 AY273914 (cited in D’Elıa 2003)
Notiomys edwarsii MVZ163067 U03537 Argentina; Rıo Negro; Comallo
Phyllotis
xanthopygus
NK96033 AY341052 Chile; Tarapaca; Lago Chungara
Wiedomys
pyrrhorhinos
MVZ197567 AY275134 (cited in D’Elıa 2003)
HDI Abrothrix olivaceus
olivaceus
NK105535 AY840030 Chile; Coquimbo; Parque Nacional Fray Jorge
NK105537 AY840031 Chile; Coquimbo; Parque Nacional Fray Jorge
NK104631 AY840048 Chile; Santiago, San Carlos de Apoquindo
NK105424 AY840049 Chile; Santiago, San Carlos de Apoquindo
A. o. pencanus NK105964 AY840061 Chile; Bıo-Bıo; Tucapel
NK105967 AY840062 Chile; Bıo-Bıo; Tucapel
A. o. brachiotis NK104811 AY840065 Chile; Los Lagos; Panguipulli
NK106265 AY840066 Chile; Los Lagos; Valdivia
E. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317312
ARTICLE IN PRESS
Table 2. (continued )
DNA
segment
Species or
subspecies
Voucher GenBank
access
number
Locality
NK95647 AY840077 Chile; Los Lagos; Chiloe
A. o. xanthorhinus NK104946 AY840079 Chile; Magallanes; Parque Nacional Torres del
Paine
NK104986 AY840081 Chile; Magallanes; Parque Nacional Torres del
Paine
A. o. markhami SSUC-MaOO329/ER30 EU155876 Chile; Magallanes; Isla Wellington; Puerto Eden
SSUC-MaOO335/ER40 EU155878 Chile; Magallanes; Isla Wellington; Caleta Malaca
SSUC-MaOO333/ER37 EU155877 Chile; Magallanes; Campos de Hielo Sur; Caleta
Level
Abrothrix andinus EPA04 AY840022 Chile; Tarapaca, Lago Chungara
We utilized the mitochondrial Cytochrome b (Cyt b) gene and the Hypervariable Domain I (HDI). All of the sequences were obtained from
Rodrıguez-Serrano et al. (2006) and from GenBank (http://www.ncbi.nlm.nih.gov/Genbank/index.html), with the exception of Abrothrix olivaceus
markhami, which was obtained from specimens processed in this study. FMNH ¼ Field Museum of Natural History, Chicago, USA.
MVZ ¼Museum of Vertebrate Zoology, University of California, Berkeley, USA. NK ¼ Kriovoucher Number, Museum of Southwestern Biology,
University of New Mexico, Albuquerque, USA. SSUC ¼ Coleccion de Flora y Fauna Profesor Patricio Sanchez Reyes, Departamento de Ecologıa,
Pontificia Universidad Catolica de Chile, Santiago, Chile. GD Field catalogue number of Guillermo D’Elıa. EP Field catalogue number of Eduardo
Palma.
E. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317 313
forests north of 461S), presents the same characterstate for the rostrum as A. markhami (Mann 1978).Given that this morphological variation observed inA. markhami is very similar to observations for thegeographic races of A. olivaceus, A. markhami could be asubspecies of A. olivaceus – a widely distributed speciesthroughout Chile and Argentina.
Phylogenetic analyses
All three phylogenetic reconstruction algorithms usedin this study provided congruent topologies for theresulting cytochrome b trees (Fig. 3). The ML value ofthe tree was �ln 6138.62370. The single most parsimo-nious phylogenetic tree had 952 steps, with ConsistencyIndex ¼ 0.6917. The only topology, obtained under thereconstruction criteria used here, shows two stronglysustained clades, which form exclusive groups betweenthe species recognized as fossorial rodents (i.e. Chel-
emys; Geoxus; Notiomys; Pearsonomys) and all theforms of the genus Abrothrix. Within the Abrothrix
clade one can observe that the species Abrothrix
olivaceus originates at NODE 1 (Fig. 3). The specimensof Akodon markhami form part of the clade composed ofthe diverse subspecies of A. olivaceus, and is the sistergroup of the meridional forms (A. o. brachiotis andA. o. xanthorhinus). Similar results have been obtained forthe mtDNA control region, positioning A. markhami as asubspecies of Abrothrix olivaceus and as a sister taxon ofAbrothrix olivaceus brachiotis (Fig. 4). Furthermore, allof the species of Akodon considered in this study arephylogenetically distant from the Andean Clade, where
Akodon markhami was originally included. Given theresults from the phylogenetic analyses, we propose thatAkodon markhami constitutes a subspecies of Abrothrix
olivaceus, for which we propose the name Abrothrix
olivaceus markhami. In the last species account Musserand Carleton (2005), considered Akodon markhami as afull species of Abrothrix naming it as Abrothrix
markhami. However this classification is just an exten-sion of Smith and Patton (1993, 1999) studies onAkodontini, since these authors did not recognize thegenus Akodon for the Patagonia and southcentral Chilebut Abrothrix. Furthermore, the classification includedin Musser and Carleton’s (2005) species account was notevaluated in a phylogenetic context. Therefore, in lightof our results, Akodon markhami and Abrothrix mar-
khami are synonyms of Abrothrix olivaceus markhami
(description below).Within the clade including all of the meridional forms
of A. olivaceus, A. o. brachiotis has traditionally beenrecognized as a subspecies (Osgood, 1943; Mann, 1978),while A. o. xanthorhinus was recently included as asubspecific form by Pearson and Smith (1999) and Smithet al. (2001). Smith et al. (2001) proposed that the mostaustral forms of A. olivaceus originated from a dispersalprocess over an environmental gradient, from thetemperate forest of Chile to the Argentine Patagonia,during the last glacial retreat. Nevertheless, given thatSmith et al. (2001) did not include a molecular clockcalibration or another way of dating the biogeographicscenario, it was not possible to evaluate the time periodin which the dispersal event occurred, or to relateevolutionary time with some of the last glacial retreatsof the Quaternary (at least six events, Clapperton, 1994).
ARTICLE IN PRESS
Fig. 2. Skull of Abrothrix olivaceus markhami (SSUC-Ma-
OO330) from Puerto Eden, Isla Wellington: (A) dorsal view;
(B) lateral view; (C) ventral view; (D) lateral view of right
lower jaw. The scale-bar represents 5mm.
90 62 98
0.1 Substitution/site
A-o-br-BahiaMansa
A-o-br-SanMartin
A-o-br-PuertoOctay
A-o-xa-Coyhaique
A-o-xa-ChileChico
A-o-xa-Balmaceda
A-o-br-LagoRiesco
A-o-markhami-ER30
A-o-markhami-ER37
A-o-markhami-ER40
A-o-ol-Coquimbo
A-o-ol-Valparaiso
Abrothrix andinus
Abrothrix longipilis
Abrothrix jelskii
Geoxus valdivianus
Pearsonomys annectens
Chelemys macronyx
Chelemys megalonyx
Notiomys edwardsii
Akodon albiventer
Akodon-torques
Akodon azarae
Necromys temchuki
Phyllotis chilensis
Wiedomys pyrrhorhinos
ML/MP/NJ Tree
A. o. brachiotis and
A. o. xanthorhinus
Abrothrix olivaceus
markhami
A. o. olivaceus
60 69 73
68 77 61
NODE 193
100 100
-62 64
70 80 85
62 53 70
99 99
100 96 81 90 -
62 98
Fig. 3. Phylogenetic position of Abrothrix olivaceus markhami
in a reconstruction under the Maximum Likelihood criterion.
(The Maximum Parsimony and Neighbor-Joining algorithms
show the same topology.) The three values near the branches
correspond to the Bootstrap percentage for ML, MP and N-J,
respectively, all of which support the topology.
E. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317314
Our molecular clock calibration allowed us to date theseparation of A. o. markhami from A. o. brachiotis atabout 0.24 MYBP (for the cytochrome b gene), and 0.20MYBP (for the HDI gene; Fig. 4). Therefore, the time
period of origin of A. o. markhami is before the lastglaciation (Clapperton 1994). In this temporal frame-work, the explanation for the origin of this taxon is notsupported by a recent postglacial dispersal event, as wasoriginally proposed by Smith et al. (2001). As analternative, we propose that the origin of A. o. markhami
occurred as a vicariant process, a hypothesis which issupported by two lines of evidence. First, the topologyof the reconstructed phylogeny indicates A. o. markhami
as a monophyletic clade, represented by specimens thatonly inhabit west of the southern ice fields (Fig. 1).Furthermore, one of the captured specimens inhabitedthe continental region next to the southern ice fields(ER37; 4910301200S; 7412105500W). In other words, theforms inhabiting areas to the west of this greatgeographical barrier constitute a unique lineage, isolatedfrom the lineages of A. olivaceus which inhabit theeastern part of the southern ice fields. Secondly, IslaWellington, the type locality for this taxon, was the onlyarea in the Patagonia channels that provided a glacialrefuge during the Quaternary in the last glacialmaximum (Ashworth et al. 1991). Although our resultspartially coincide with the proposal by Smith andPatton (1993, 1999), in that A. o. markhami is not adifferent species from the continental forms, our study
ARTICLE IN PRESSE. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317 315
suggests that this geographic race is not a postglacialinvader of Isla Wellington as was previously proposed(Smith and Patton 1999). These findings allow us toextend the distribution of this Patagonian sigmodontineto the continental area east of Isla Wellington, near theSouthern Ice Fields.
Finally, we consider that it is important to utilizemolecular approximations to resolve this type ofsystematic confusion. This is especially useful in com-plex geographical scenarios, such as those produced byglacial dynamics, where the high amounts of intraspe-cific variability are probably produced by local processesof adaptation, and not necessarily by diversificationprocesses. In particular, A. olivaceus has three subspe-cies south of 411S, and some possibly not yet evaluatedforms from the Magellanic islands, which also form partof this species, such as Akodon hershkovitzi (Pattersonet al. 1984). This hypothesis could be tested usingphylogeographic approaches (Avise 2000) based onmolecular markers. Using these approaches, researcherswill be able to evaluate and understand the mode andtime of origin of this and other still controversialgenealogical lineages of the austral sigmodontines.
Abrothrix olivaceus markhami, new subspeciesSynonymy:Akodon olivaceus brachiotis Markham, 1971Akodon markhami Pine, 1973Abrothrix markhami Musser and Carleton, 2005Holotype – Adult male described by Pine (1973), skin
and skull under collection number USNM501221
0.40.60.8 0.40.60.8
Fig. 4. The molecular clock calibrated with the separation betw
Deformation Method. The cladogenetic event which originated the g
at about 0.20 million years ago. This tree is based on the Hypervar
(National Museum of Natural History, Washington,DC, USA), collected on April 2, 1971 by B. J. Markhamfrom Puerto Eden, Isla Wellington, Magallanes, Chile.
Distribution – Currently know from the Isla Well-ington (491090S; 741270W) and the continental area tothe west of the Southern Ice Fields (4910301200S;7412105500W) in Chile. The dominant flora of these areasis evergreen forest composed by Nothofagus dombeyi,N. betuloides, Drimys winteri and Lomatia ferru-
ginea. Arbustive stratum is composed by Tepualia
stipularis and Blechnum magellanicum. This subspeciesis syntopic with another sigmodontine Oligoryzomys
longicaudatus.Diagnosis – Size slightly greater than Abrothrix
olivaceus brachiotis (Table 1); pelage long, smooth anddense; dorsum varying from gray-brown to brown;lateral region with a distinctive pale brown to yellowantero–posterior band, that projects to the sides of nose;venter gray with hairs blackish at bases. Tail tricolor,dorsum dark, lateral pale brown and venter gray; manusand foots dominant pale brown.
Measurements – External measurements for theholotype are total length, 184mm; length of tail,77mm; length of hind foot, 25mm; and ear from notch,15mm; weight 30 g. Means for external measurementsfor two topotypes (ER30; ER34) are total length,165mm; length of tail, 71mm; length of hind foot,25mm; and ear from notch, 16mm; weight 25 g. Meansfor external measurements of six individuals from CaletaMalaca and Caleta Level are total length, 197mm;
AomarkhamiER40
AomarkhamiER30
AomarkhamiER37
Aobrachiotis3
Aobrachiotis2
Aobrachiotis1
Aopencanus2
Aopencanus1
Aoxanthorhinus2
Aoxanthorhinus1
Aoolivaceus4
Aoolivaceus3
Aoolivaceus2
Aoolivaceus1
Aandinus
0.00.2Million Years
AomarkhamiER40
AomarkhamiER30
AomarkhamiER37
Aobrachiotis3
Aobrachiotis2
Aobrachiotis1
Aopencanus2
Aopencanus1
Aoxanthorhinus2
Aoxanthorhinus1
Aoolivaceus4
Aoolivaceus3
Aoolivaceus2
Aoolivaceus1
Aandinus
0.00.2Million Years
een Abrothrix andinus/A. olivaceus, using the Local Rated
eographic form of Abrothrix olivaceus markhami was estimated
iable Domain I of the mtDNA control region.
ARTICLE IN PRESSE. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317316
length of tail, 85mm; length of hind foot, 27mm; andear from notch, 18mm; weight 42 g.
Etymology – Pine (1973) described Akodon markhami
honoring the extensive contributions of Brent J. Mark-ham to the knowledge of Magellan vertebrates. Forthese reasons, we think that this denomination must stayin this taxon, determining the geographic race ofAbrothrix olivaceus that inhabit the Isla Wellingtonand the adjacent continental region of Chile.
Acknowledgements
This paper was greatly improved by comments fromPaula E. Neill, Teresa M. Tapia, Margarita Marchantand two anonymous reviewers. The community ofPuerto Eden, especially Don Jose Navero, Sra. Nelda,Manuel Navero, Carabineros de Chile and CONAFRegion de Magallanes y Antartica Chilena, providedessential logistical support on Isla Wellington. We aregrateful for financial support from FONDECYT Grants#3050092 and 1070331, the Center for EcosystemResearch in Patagonia (CIEP) through the DIUC-Patagonia Grant #205.113.0651sp to C. E. Hernandez,and FONDAP-FONDECYT Grant #1501-0001 (Pro-gram 2) to R. E. Palma through the Center forAdvanced Studies in Ecology & Biodiversity (CASEB),and the NIH Hantavirus Ecology-Chile grant. We alsothank Nicolas Howard of NAVIMAG Ferries forproviding a significant portion of transportation coststo Isla Wellington. We are grateful to the IDEA WILDFOUNDATION for technological support. E. Rodrı-guez-Serrano was supported by a DIPUC DoctoralFellowship.
Zusammenfassung
Ein neuer Fund und eine Neubewertung der phyloge-
netischen Einstufung von Abrothrix olivaceus markhami(Rodentia: Sigmodontinae)
Neue phylogenetische Studien an der Subfamilie voncricetiden Nagetieren (Sigmodontinae) erlauben eineValidierung der taxonomischen Klassifikation auf Tri-busebene, die u.a. in einer neuen Gruppe resultiert: demAndinen Kladus. Es ist moglich, dass einige endemischeArten aus dem sudlichsten Teil Sudamerikas diesemKladus zuzurechnen sind, wobei fruhere Studien dieseHypothese aufgrund der Schwierigkeit, Probenmaterialzu erhalten, nicht bewertet haben. In dieser Studiebewerten wir die phylogenetischen Beziehungen vonAkodon markhami (Pine, 1973), einer im chilenischenPatagonien endemischen Art, basierend auf kurzlich anihrer Typuslokalitat gefangenen Individuen dieser Art.Unsere Ergebnisse zeigen, dass diese Form von Akodon
einer Unterart von Abrothrix olivaceus entspricht undals eine geographische Rasse dieser auf dem sudameri-kanischen Kontinent weit verbreiteten Art dem AndinenKladus zugeordnet werden sollte. Auf der Basis einermolekularen Uhr-Kalibrierung wird der Ursprungdieser geographischen Rasse auf die jungsten Glazial-zyklen im Quartar als das Ergebnis eines Vikarianz-Prozesses datiert.
References
Akaike, H., 1974. A new look at the statistical
model identification. IEEE Trans. Autom. Control 19,
716–723.
Anderson, S., Bankier, A.T., Barrell, B.G., de Bruijn, M.H.L.,
Coulson, A.R., Drouin, J., Eperon, I.C., Nierlich, B., Roe,
A., Sanger, F., Schrier, P.H., Smith, A.J.H., Staden, R.,
Young, C., 1981. Sequence and organization of the human
mitochondrial genome. Nature 290, 457–465.
Animal Care and Use Committee, 1998. Guidelines for the
capture, handling, and care of mammals as approved by the
American Society of Mammalogists. J. Mammal. 79,
1416–1431.
Ashworth, A.C., Markgraf, V., Villagran, C., 1991. Late
Quaternary climatic history of the Chilean channels based
on fossil pollen and beetle analysis, with an analysis of the
modern vegetation and pollen rain. J. Quat. Sci. 6, 279–291.
Avise, J.C., 2000. Phylogeography: The History and Forma-
tion of Species. Harvard University Press, Cambridge, MA.
Clapperton, C.M., 1994. The Quaternary glaciation of Chile: a
review. Rev. Chil. Hist. Nat. 67, 369–383.
D’Elıa, G., 2003. Phylogenetics of Sigmodontinae (Rodentia,
Muroidea, Cricetidae), with special reference to the
Akodont group, and with additional comments on histor-
ical biogeography. Cladistics 19, 307–323.
Edwards, S.V., Arctander, P., Wilson, A.C., 1991. Mitochon-
drial resolution of a deep branch in the genealogical tree for
perching birds. Proc. R. Soc. London B 243, 99–107.
Engel, S.R., Hogan, K.M., Taylor, J.F., Davis, S.C., 1998.
Molecular systematics and paleobiogeography of the South
American Sigmodontine rodents. Mol. Biol. Evol. 15,
35–49.
Felsenstein, J., 1981. Evolutionary trees from DNA sequences:
a maximum likelihood approach. J. Mol. Evol. 17, 368–376.
Felsenstein, J., 1985. Confidence limits on phylogenies: an
approach using the bootstrap. Evolution 39, 791–793.
Hollin, J.T., Schilling, D.H., 1981. Late Wisconsin – Weichselian
mountain glaciers and small ice caps. In: Denton, G.H.,
Hughes, T.J. (Eds.), The Late Great Ice Sheets. Wiley,
New York, pp. 179–206.
Jobb, G., 2005. TREEFINDER version of October 2005.
Munich, Germany. Distributed by the author at
/www.treefinder.deS.
Mann, G., 1978. Los pequenos mamıferos de Chile. Gayana
Zool. 40, 1–342.
Markham, B.J., 1971. Catalogo de los anfibios, reptiles, aves y
mamıferos de la provincia de Magallanes (Chile). Instituto
de la Patagonia, Punta Arenas, Chile.
ARTICLE IN PRESSE. Rodrıguez-Serrano et al. / Mamm. biol. 73 (2008) 309–317 317
Murray, V., 1989. Improved double-stranded DNA sequen-
cing using the linear polymerase chain reaction. Nucleic
Acid Res. 17, 8889.
Musser, G.G., Carleton, M.D., 2005. In: Wilson, D.E.,
Reeder, D. M. (Eds.), Superfamily Muroidea. Mammal
Species of the World, third ed. Johns Hopkins University
Press, Baltimore, MD.
Osgood, W.H., 1943. The mammals of Chile. Field Mus. Nat.
Hist. 30, 1–268.
Palma, R.E., Marquet, P.A., Boric-Bargetto, D., 2005. Inter
and intraspecific phylogeography of small mammals in the
Atacama Desert and adjacent areas of northern Chile.
J. Biogeography 32, 1931–1941.
Pardinas, U.F.J., D’Elıa, G., Ortiz, P.E., 2002. Sigmodontinos
fosiles (Rodentia, Muroidea, Sigmodontinae) de America
del Sur: Estado actual de su conocimiento y prospectiva.
J. Neotrop. Mammal. 9, 209–252.
Patterson, B.D., Gallardo, M.H., Freas, K.E., 1984. Systema-
tics of mice of the subgenus Akodon (Rodentia: Cricetidae)
in southern South America, with the description of a new
species. Fieldiana Zool. 23, 1–16.
Pearson, O.P., Smith, M.F., 1999. Genetic similarity between
Akodon olivaceus and Akodon xanthorhinus (Rodentia:
Muridae) in Argentina. J. Zool. London 247, 43–52.
Pine, R.H., 1973. Una nueva especie de Akodon (Mammalia:
Rodentia: Muridae) de la Isla Wellington, Magallanes,
Chile. An. Inst. Patagonia 4, 423–426.
Posada, D., Crandall, K.A., 1998. Modeltest: testing the model
of DNA substitution. Bioinformatics 14, 817–818.
Redford, K.H., Eisenberg, J.F., 1992. Mammals of the
Neotropics: The Southern Cone, Chile, Argentina, Uru-
guay, Paraguay. University of Chicago Press, Chicago, IL.
Reig, O.A., 1987. An assessment of the systematics and
evolution of the Akodontini, with the description of a new
fossil species of Akodon (Cricetidae: Sigmodontinae).
Fieldiana Zool. 39, 347–399.
Rodrıguez-Serrano, E., Cancino, R.A., Palma, R.E., 2006.
Molecular phylogeography of Abrothrix olivaceus (Roden-
tia: Sigmodontinae) in Chile. J. Mammal. 87, 971–980.
Smith, M.F., Patton, J.L., 1993. The diversification of South
American murid rodents: evidence from mitochondrial
DNA sequence data for the Akodontine tribe. Biol.
J. Linn. Soc. 50, 149–177.
Smith, M.F., Patton, J.L., 1999. Phylogenetic relation-
ships and radiation of sigmodontine rodents in South
America: evidence from Cytochrome b. J. Mamm. Evol. 6,
89–128.
Smith, M.F., Kelt, D.A., Patton, J.L., 2001. Testing models of
diversification in mice in the Abrothrix olivaceus/xanthor-
hinus complex in Chile and Argentina. Mol. Ecol. 10,
397–405.
Swofford, D.L., 2002. PAUP*: Phylogenetic Analyses Using
Parsimony (*and Other Methods). Version 4.0. Sinauer
Associates, Inc., Publishers, Sunderland, MA.
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F.,
Higgins, D.G., 1997. The CLUSTAL_X windows interface:
flexible strategies for multiple sequence alignment aided by
quality analysis tools. Nucleic Acids Res. 25, 4876–4882.