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TeSS and Bioschemas
Niall Beard, Milo Thurston, Finn Bacall, Susanna-Assunta Sansone, Teresa Attwood, Carole Goble
FAIRDOM Webinar series2pm GMT - 19th January 2017
Institutions and organization providing training materials, courses, and eLearning
+ many, many, many more
Great discovery tool…
• If you know the specific name of the thing you’re looking for (e.g. ‘EuBIC Winter School’).
• Not so great if you just want to see what proteomics related events are available
The Long Tail of Training Resources
Number of websites
Volu
me
of m
ater
ials
Large institutions and repositories>30 training resourcesSignificant online presence
Smaller websites<30 training resourcesOften buried in search results
Quick TeSS Overview
• Aggregation and registration of training events and materials
• Tools to filter, search, and discover• Users can organize into packages and training workflows• Interlinking with other ELIXIR registries • ELIXIR Node ‘shop window’ view• https://tess.elixir-europe.org
TeSS Materials index page
Filter By:
Content ProviderScientific Topic ToolStandardsPoliciesTarget AudienceKeywordDifficulty LevelAuthorContributorLicenceELIXIR Node
Search for text and order results
Visual Workflows
• Developing workflows to represent typical data analyses.
• Attaching tools, training, and other resources to each stage.
Registry integration
• Associate TeSS resources with bio.tools and Biosharing.org resources.
• Search for all training materials about a specific tool, standard operating procedure, database etc.
• Tool-centric search
TeSS summary
• Aggregated training portal with functions:• Search and Filter
• Training workflows
• Subscription services
• iAnn events widgets
• Integration with bio.tools and biosharing.org
• ELIXIR node views
• Upcoming:• More curation tools
• Collaboration with BD2Ks training portal
• More integrations with other information services
HTML scraper
• Difficult to write. • - Every site is unique• - Some have more treacherous HTML • Very susceptible to change• - Fixing is re-implementing. • - Build up of technical debt
http://cdn2.bigcommerce.com/server100/367cc/products/46401/images/183293/Super_Scraper__13402.1360690411.1280.1280.jpg?c=2
<p>Mon, 27 Feb 2017, 12:00 –</p>
<div itemscope itemtype="http://schema.org/Recipe">
<div itemprop="nutrition” itemscopeitemtype="http://schema.org/NutritionInformation">
Nutrition facts: <span itemprop="calories">144 kcal</span>, </div>
Ingredients: - <span itemprop="recipeIngredient">800g small new potato</span> - <span itemprop="recipeIngredient">3 shallot</span> . . .
<script type="application/ld+json">{ "@context": "http://schema.org", "@type": ”Recipe", "name": ”Potato Salad", “NutritionInformation”: {
"calories”: “144 kcal”, "recipeIngredient”: “800g small new potato”, "recipeIngredient”: “3 shallot”. . .
What is Bioschemas• Developing schema.org
specifications to work for Life sciences
• Proposing amendments and new schemas to be able to describe Life science resources.
• Events and CreativeWork (materials). Also for tools, data, data repositories
Image: http://bioschemas.org/
Special thanks to TeSS and Bioschemas’ collaborators, our guinea pigs, and community
TeSS TeamFinn BacallMilo ThurstonAleksandra NenadicSusanna-Assunta SansoneTeresa AttwoodCarole Goble+ Many more
Events/Training materials Bioschemas TeamRafael JiminezMartin CookPremysl VeselykAleksandra NenadicGabriella RusticiDominique Batista+ Many more
https://tess.elxir-europe.org and http://bioschemas.org