Transcript
Page 1: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

a fast and simple model for protein structure prediction

Benjamin JefferysLawrence KelleyMike Sternberg

Page 2: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

structure simplification

Page 3: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

Langevin modelling

Page 4: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

Langevin modelling

Page 5: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

springs

Page 6: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

springs

Page 7: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

backbone conformation

Page 8: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

hydrogen bonds

Page 9: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

hydrogen bonds

Page 10: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

water

Page 11: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

water

Page 12: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

water

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sidechain interactions

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sidechain interactions

Page 15: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

sidechain interactions

Page 16: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 17: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 18: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 19: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 20: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 21: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

Page 22: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

results

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other applications

Page 24: a fast and simple model for protein structure  prediction Benjamin  Jefferys Lawrence Kelley

acknowledgements

Lawrence Kelley and Mike SternbergAlex Herbert and Daniel ChubbStructural Bioinformatics GroupRichard Jefferys

3DSIG/ISMB presence

Laptop set today – films and protein art

Visual Reflections entry:Deliberately obfuscated visualisation of forces hypothesized to be important for protein folding in a TIM barrel domain