Zuheir Subhi El-bayyari, Ph fileZuheir Subhi El-bayyari, Ph

9212019 Dr Zuheir El-bayyari- Curriculum Vitae Page 1 of 26

Zuheir Subhi Saleh El-bayyari PhD Department of Basic Sciences amp Mathematics Faculty of Science

Philadelphia University PO Box 1 19392 Jordan

Office (962) 6 479-9000 ext 2660 Mobile (962) 79 556-4225 Fax (962) 6 479-9040 Home (962) 6 533-0460

zbayyarirocketmailcom httpwwwphiladelphiaedujoacademicsz_bayyaripagephpid=12

httpwwwacademiaedu26906990Multi-beam_synchrotron_infrared_chemical_imaging_with_high_spatial_resolution_Beamline

_realization_and_first_reports_on_image_restoration

PERSONAL DATA Full Name Zuheir Subhi Saleh El-Bayyari Academic Title Associate Professor Date of Birth January 31 1962 Place of Birth Amman - Jordan Nationality Jordanian Passport Number Date of Issue Date of Expiry Marital Status Married with one child Mailing Address P O Box 510852 Amman 11151 Jordan EDUCATION AND DEGREES University of Wisconsin-Madison (USA) Certificate (2007 ndash 2008) Technical Training on Nuclear Knowledge Accelerator Physics ( Synchrotron Radiation Physics Infrared Beamlines Chemical Imaging and IR microspectroscopy of single cells and cancer tissues) University of Wisconsin-Milwaukee (USA) Certificate (2004 ndash 2005) Technical Training on Nuclear Knowledge Accelerator Physics ( Synchrotron Radiation Physics Infrared Beamlines Chemical Imaging and IR microspectroscopy of single cells and cancer tissues) Middle East Technical University (Ankara-Turkey) PhD 2241993 Atomic and Molecular Physics (Computational Nanomaterialrsquos Solid State Physics )

Dissertation Molecular Dynamics Computer Simulation of Aluminum Bulk Surface and Cluster Properties

Mentor Prof Şaker Erkoccedil GPA 35540

Middle East Technical University (Ankara-Turkey) MSc 16121987 Atomic and Molecular Physics (Computational Nanomaterialrsquos Solid State Physics ) Thesis Development of A Semi-Empirical Potential Energy Function Application to Microclusters

Yarmouk University (Irbid-Jordan) BSc Physics 2361984 GPA 745100

KNOWLEDGE OF LANGUAGES Mother tongue Second language Other languages Arabic V Good English V Good Turkish Good Turkish language is learned personally during my living in Turkey The language of instructions for my graduate studies is English PRSENT POSITION Associate Professor of Physics Department of Basic Sciences and Mathematics Faculty of Science Philadelphia University Aein Al-basha 19392 Jordan PROFESSIONAL EXPERIENCE Associate Professor of Physics Philadelphia University (Jordan) 2005 - Present Head of Department of Basic Sciences and Mathematics Faculty of Science Philadelphia University Ayin Al-basha 19392 Jordan 05 032013 - 3182014 Visiting Professor National Synchrotron Radiation Research Center (NSRRC) Taiwan 01072010 - 31122010 Visiting Scholar University of Wisconsin-Milwaukee amp Madison (USA) 02072007 - 02012008 Visiting Scholar University of Wisconsin-Milwaukee (USA) 01032004 - 30092004 Assistant Professor of Physics Philadelphia University Faculty of Science (Jordan) 01091998 - 03042005 Assistant Professor of Physics Al-Albayt University (Jordan) 1995 - 1998 Lecturer Al-Fateh Private Libyan College (Turkey) 1991 - 1993

Research Assistant Middle East Technical University (Turkey) 1989 - 1993 Research Assistant Yarmouk University (Jordan) 1984 - 1985 HONORS amp AWARDS

1 Fullbright Fellowship award for the year (2015-2016) - University of Wisconsin-Milwaukee in USA (Breast Cancer Project) (Not accomplished due to special conditions ) 01092015 ndash 30082016

2 National Synchrotron Radiation Research Center (NSRRC) Fellowship in Taiwan 01072010 - 31122010

3 International Atomic Energy Agency (IAEA) Fellowship JOR06037 02072007 - 02012008

4 University of Wisconsin-Madison- Synchrotron Radiation Center (SRC) USA Honorary Fellowship 02072007 - 02012008

5 University of Wisconsin-Milwaukee- USA Honorary Fellowship 02072007 - 02012008

6 National Science Foundation (NSF) Fellowship SRC-Madison WI USA 01032004 - 30092004 CULUTURAL EDUCATIONAL amp PROFESSIONAL AFFILIATIONS

1 Petra School of Physics Jordan 2 International Pilot to Physics ndash Through Internet 3 Center for Mathematical Sciences (AUB) ndash Lebanon 4 The Royal Society for the Conservation of Nature Jordan 5 Turkish Universities and Institutes Alumni Club (TUIAC) ndash Executive Committee

Member 6 Center for Renewable Energy- Committee member Philadelphia University

RELEVANT RESEACH FIELDS

1 Molecular-Dynamics Computer Simulation of Clusters Nanoparticles Nanomaterials Surface and Bulk Properties of Condensed Matter

2 Development of Empirical Many-Body potential Energy Function for Atomic Interactions

3 Variable Angle Spectroscopic Ellipsometry VASE 4 Infrared Microspectroscopy (IR) based on Synchrotron Radiation and its

applications in the medical filed 5 Chemical imaging of biological living cells and human tissues

REVIEWER International Academy of Science Engineering and Technology ASET

1 International Journal of Theoretical and Applied Nanosciences httpijtanavestiacom

2 Mutah Lil-Buhūth Wad-Dirāsāt httpwwwmutahedujodar 3 Referee Philadelphia University Prize for the Best Written Book

MSc and PhD STUDENTS SUPERVISED AND EXTERNAL EXAMINER 1 Numerical investigation of the Wakefield driven by low emittance electrons beam during its extraction from the cathode in the laser driven radio frequency gun (Mays S Hamdan Hashemite University 14 April 2016 MSc Thesis) (External Examiner) Current Position Department of Physics Hashemite University Zarqa-Jordan RESEARCH

Citing articles Network

Network ID Network Link

httpswwwlinkedincominzuheir-el-bayyari-2735741a

httpsscholargooglecomcitationspli=1ampauthuser=1ampuser=UaFiS2wAAAAJ

orcidorg0000-0003-2525-259X

httpsorcidorgmy-orcid

Scopus Author ID 7801693075

httpswwwscopuscomauthiddetailuriauthorId=7801693075

httpswwwresearchgatenetprofileZuheir_El-bayyari

ResearcherID W-8754-2018

httpwwwresearcheridcomridW-8754-2018

Publications in Reviewed Journals 1 Z El-Bayyari and Ş Erkoccedil Molecular - Dynamics Computer Simulation of Aluminum Clusters (Aln n = 3 - 55 ) Empirical Many - Body Potential Energy Function Calculation Phys Stat Sol (b) 170 103 - 111 (1992)

httpwww3intersciencewileycomcgi-binabstract112454791ABSTRACT 2 Z El-Bayyari and Ş Erkoccedil Bulk and Surface Properties of Aluminum A Molecular - Dynamics Simulation Materials Chemistry and Physics 37 382 - 388 (1994) httpwwwsciencedirectcomsciencearticlepii0254058494901791 3 Z El-bayyari

Molecular ndash Dynamics Computer Simulations of Silver Aggregates (Agn n = 3 ndash 13 ) Empirical Many ndash Body Potential Energy Function Calculation Phys Stat Sol (b) 208 339 ndash 347 (1998) httpwww3intersciencewileycomcgi-binabstract40001494ABSTRACT

4 Mohammad A Abadi and Z El-Bayyari Screened Hydrogenic Calculations of the Photo-detachment Cross-Section of the Atomic Lithium Anion Mutah Lil- Buhūth Wad-Dirāsāt 15 No 4 161-176 (2001)

httpwwwmutahedujodarsciejhtm 5 Mohammad A Abadi and Z El-Bayyari The Absolute Threshold Photo-detachment Cross-Section of AL- Mutah Lil-Buhūth Wad-Dirāsāt 16 No 1 83-95 (2001)

httpwwwmutahedujodarsciejhtm 6 Z El-Bayyari

Gold Microclusters (Aun n =3 - 13) A Molecular - Dynamics Computer Simulation in ldquoComputer Simulation Studies in Condensed Matter Physics XIV Eds D P Landau S P Lewis and H B Schuumlttler ldquo Vol 89 Part II Page 47 (Springer Verlag Heidelberg Berlin 2001) httpwwwspringercomeasthome

7 Z El-Bayyari

Embryonic Form of Nickel and Palladium A Molecular - Dynamics Computer Simulation in ldquoComputer Simulation Studies in Condensed Matter Physics XVII Eds D P Landau S P Lewis and H B Schuumlttler ldquo Vol 103 Page 205 ( Springer Verlag Heidelberg Berlin 2004) httpwwwspringercomeasthomematerialsSGWID=5-10041-22-51644178-detailsPage=ppmmedia|toc

8 Z El-Bayyari Huumlseyin Oymak and Hatice Koumlkten On the Structure and Energetic Features of Small metal Clusters Nin Cun Pdn Ptn

and Pbn n=3-13 International Journal of Modern Physics C 15 917-930 (2004) httpejournalswspccomsgijmpc151506S0129183104006339html

9 Z El-Bayyari Embryonic Forms of Nickel A Molecular - Dynamics Computer Simulation Journal of Molecular Structure THEOCHEM 716 165-174 (2005)

httpdxdoiorg101016jtheochem200412010 10 Z El-Bayyari A comparison Study of Ni Pd Pt and Pb Microclusters A Molecular - Dynamics

Computer Simulation Submitted for publication to the Journal of Material Chemistry and Physics

httpwwwelseviercomwpsfindjournaldescriptioncws_home504097descriptiondescription

11 Carol J Hirschmugl Z El-bayyari Maria Bunta Justin B Holt and Mario

Giordano Analysis of the nutritional status of algae by Fourier Transform Infrared

Chemical Imaging Infrared Physics amp Technology 49 57- 63 (2006) httpdxdoiorg101016jinfrared200601032

12 Ayman AbdEl-Aziz El-Sayed Monem A S Zuheir S El-bayyari Galal A A Zeinab K Protein Secondary Structure Variations Induced By UV Radiation FTIR Spectroscopy Study For Chlorella Kessleri

Conference International conference on Powering a Greener Future Nanomaterials for Solar Energy Conversion [Solar2009] At LUXOR EGYPT

13 Michael J Nasse Eric C Mattson Ruben Reininger Tim Kubala Sebastian

Janowski Z El-bayyari and Carol J Hirschmugl Multi-beam synchrotron infrared chemical imaging with high spatial resolution Beamline realization and first reports on image restoration Nuclear Instruments and Methods in Physics Research A 649 172-176 (2011) Journal homepage wwwelseviercomlocatenima httpdxdoiorg101016jnima201012095

14 Bothina Hamad Zuheir El-Bayyari and Ali Marashdeh Investigation of the stability of platinum clusters and the adsorption of nitrogen

monoxide First principles calculations Chemical Physics 443 26 ndash 32 (2014) httpdxdoiorg101016jchemphys201407004

15 Z El-Bayyari Nanotechnology and Nanomedicine Journal of Nanomedicine Research Volume 7 issue (2) (2018) httpmedcraveonlinecomJNMRJNMR-07-00174pdf

16 Z El-Bayyari and Bothina Hamad Embryonic Iridium Nanoclusters (n = 3-13) A Molecular Dynamics Computer Simulation International Journal of Modern Physics C 00 000-000 (2019)

Accepted for Publication in (httpswwwworldscientificcomworldscinetijmpc) (httpDoiorg101142S0129183120500023)

Works in Progress 17 M J Nasse R Reininger T Kubala S Janowski Z El-Bayyari and C

HirschmuglSynchrotron Infrared Microspectroscopy Imaging Using a Multi-Element Detector (IRMSI-MED) for Diffraction-Limited Chemical Imaging In preparation

18 Z El-Bayyari M J Nasse R Julian A Norici S Ratti C Hirschmugl

and M Giordano Rapid assessment of resource partitioning in algae with IR microspectroscopy In preparation

19 Z El-Bayyari Growth of copper aggregates A Molecular - Dynamics Computer Simulation In preparation

Proceedings Presented in National Meetings 1 Z El-bayyari Molecular ndash Dynamics Computer Simulation of Silver Aggregates (Agn n = 3 ndash 13) Empirical Many-Body Potential Energy Function Calculation Third Symposium on Computational Condensed Matter Physics 3 ndash 5 November 1997 Irbid ndash Jordan Proceedings Presented in International Meetings 1 Z El-Bayyari Gold Micro-clusters (Aun n = 3 - 13) A Molecular - Dynamics Computer Simulation The14th Annual Workshop on Recent Developments in Computer Simulation Studies in Condensed Matter Physics Center for Simulational Physics University of Georgia-Athens 19-24 Feb 2001 USA 2 Z El-Bayyari Embryonic Form of Nickel and Palladium A Molecular - Dynamics Computer Simulation The 17th Annual Workshop on Recent Developments in Computer Simulation Studies in Condensed Matter Physics Center for Simulational Physics University of Georgia-Athens 16-20 Feb 2004 USA

Research Grants Received (1) ldquoSynchrotron Infrared Microspectroscopy Imaging Using a Multi-Element Detector (IRMSI-MED) for Diffraction Limited Chemical Imagingrdquo International Atomic Energy Agency (IAEA)

Principal Investigator Prof Carol Hirschmugl Co-Principle Investigator Dr Zuheir El-bayyari Total Costs for the Project $1000000 httpwwwsrcwiscedunewsnewsletter2006fall_newsletter100206htm Period of Award 01072007- 01022008

(2) ldquoAnalysis of the Nutritional Status of Algae by Fourier Transform Infrared Chemical Imagingrdquo National Science Foundation (NSF)

Principal Investigator Prof Carol Hirschmugl Co-Principle Investigator Dr Zuheir El-bayyari Total Costs (Co-PI) $17700 Period of Award 01032004 - 30092004

(3) ldquoAn Innovative Kinetic Study of Early Breast Cancer Detection Using Infrared Microspectroscopyrdquo National Synchrotron Radiation Research Center (NSRRC)-Taiwan

Principal Investigator Prof Yao-Chang Lee Co-Principle Investigator Dr Zuheir El-bayyari Total Costs for the Project NTD38400000 Period of Award 01062010 - 31122010

INVITED AND PRESENTED SEMINARS 1 Middle East Technical University (Turkey) Department of Physics October 1987

ldquoDevelopment of a Semi - Empirical Potential Energy Function Applications to Micro-clustersrdquo

2 Middle East Technical University (Turkey) Department of Physics December 1988 ldquoBasic Laser Principlesrdquo

3 Middle East Technical University (Turkey) Department of Physics June 1989 ldquoAbsorption in Semiconductorsrdquo

4 Middle East Technical University (Turkey) Department of Physics June 1989 ldquoTheory of Charged Particle Excitationrdquo

5 Middle East Technical University (Turkey) Department of Physics December 1992 ldquoMolecular Dynamics Computer Simulation of Aluminum Bulk Surface and Cluster Propertiesrdquo

6 Al-albayt University (Jordan) Department of Physics December 12 1995 ldquoComputer Simulations in Physicsrdquo

7 Al-albayt University (Jordan) Department of Physics April 14 1996 ldquoClusters Condensed Matter in Embryonic Formrdquo

8 Al-albayt University (Jordan) Department of Physics November 20 1996 ldquoCluster Models for Surface and Bulk Phenomenardquo

9 Al-albayt University (Jordan) Department of Physics May 07 1997 ldquoVariable Angle Spectroscopic Ellipsometery VASErdquo

11 Al-albayt University (Jordan) Department of Physics April 01 1998 ldquoPotential Energy Functions Used in Computer Simulation of Materialsrdquo

12 University of Georgia Athens GA (USA) Department of Physics February 19-24 2001 ldquoGold Micro-Clusters (Aun n=3-13) A Molecular Dynamics Computer Simulationrdquo

13 University of Georgia Athens GA (USA) Department of Physics February 06-20 2004 ldquoEmbryonic Form of Nickel and Palladium A Molecular-Dynamics Computer Simulationrdquo

14 University of Wisconsin-Milwaukee WI (USA) Department of Physics September 09 2004 ldquoMolecular Dynamics Computer Simulation of Bulk Surface and Clustersrdquo

15 University of Wisconsin-Milwaukee WI (USA) Department of Physics September 09 2004 ldquoInfrared Spectromicroscopy and its Applications to Living Cellsrdquo

16 3rd SESAME users meeting Antalya-Turkey October 11-13 2004 ldquoInfrared and its Applications to Microalgal Cellsrdquo

17 Fourth International Workshop on Infrared Microscopy and Spectroscopy with Accelerator Based Sources (WIRMS) September 24 ndash 29 2007 Awaji-Island Hyogo ndash Japan ldquoRapid Assessment of Resource Partitioning in Algae with IR Microspectroscopyrdquo

18 ldquoAn Innovative Kinetic Study of Early Breast Cancer Detection Using Infrared Microspectroscopyrdquo National Synchrotron Radiation Research Center (NSRRC) Hsinchu-Taiwan (Four Seminars during the period of August to December 2010)

19 ldquoEarly Breast Cancer Detection Using Infrared Microspectroscopyrdquo SESAME LinkSCEEM HPC Summer School 19 July 2011

20 ldquoFTIR Micro-spectroscopy of single cells and cancer tissuesrdquo First Swedish-Jordanian Workshop on atomic molecular and cluster physics with Synchrotron Radiation Hashemite University 25-29 January 2015

CONFERENCES 1 International Conference on Beam Solid Interactions - Middle East Technical

University Ankara - Turkey April 24 - 28 1989 2 Second Symposium on Computational Condensed Matter Physics Yarmouk

University Irbid ndash Jordan November 06 - 08 1995 3 First workshop on Space Communications Al al - Bayt University Mafraq ndash Jordan

March 12 1996 4 International Cooperation Program of the EU and Al al-Bayt University on High

Performance Computing Mafraq ndash Jordan September 09 - 10 1996

5 Third Symposium on Computational Condensed Matter Physics Yarmouk University Irbid - Jordan In collaboration with International Center for Theoretical Physics (ICTP) Trieste-Italy November 03 - 05 1997

6 First Workshop on Remote Sensing Sciences and Technology Al - Bayt University Mafraq ndash Jordan December 09 1997

7 A Workshop on Magnetic Measurements for Characterization of Magnetic Materials and Their Quality as information Storagersquos Al - Bayt University Mafraq ndash Jordan April 20 1998

8 Sixth Petra School of Physics - (Physics of Low Dimensional Systems) Organized by (CTAPS) Yarmouk University Irbid ndash Jordan September 06 -13 1998

9 Third Symposium on Magnetics Organized by (CTAPS) Yarmouk University Irbid ndash Jordan November 02 -04 1998

10 Second Workshop on Properties and Applications of Thin Films Organized by Al-albayt University Mafraq- Jordan May 10 ndash 11 1999

11 Fourth Symposium on Condensed Matter Physics Yarmouk University Irbid ndash Jordan In collaboration with International Center for Theoretical Physics (ICTP) Trieste- Italy November 01 -03 1999

12 The 14th Annual Workshop on Recent Developments in Computer Simulation Studies in Condensed Matter Physics Center for Simulational Physics University of Georgia-Athens GA (USA) February 19-24 2001

13 The International Symposium on Innovation in Information and Communication Technology (ISIICT 2002) Conference Philadelphia University Jerash ndash Jordan May 28-29 2002

14 The JSPS Asian Scientific seminar ldquo Synchrotron Radiation Sciencerdquo at Al-Balqa Applied University Al Salt- Jordan In collaboration with the Japan Society for the Promotion of Science and The High Energy Accelerator Research Organization KEK Japan October 19-28 2002

15 Third Symposium on use of Nuclear Techniques in Environmental Studies Organized by (CTAPS) Yarmouk University Irbid - Jordan September 16-18 2003

17 Muumlller lecture series amp award ceremony University of Wisconsin-Milwaukee WI (USA) August 09-16 2004

18 Frontiers in Soft X-ray VUV and Infrared Research University of Wisconsin-Madison WI (USA) September 16-18 2004

19 Third Sesame userrsquos meeting Antalya ndash Turkey October 11-13 2004 20 The Second Conference on Scientific research in Jordan Jordan-University Amman-

Jordan November 12 2005 21 The 4th SESAME userrsquos meeting Amman-Jordan December 6-8 2005 22 The first Jordanian workshop on ldquoSynchrotron Radiation for Jordanian SESAME

Userrsquos ldquo Jordan University Amman- Jordan May 10 2006 23 The Second Jordanian workshop ldquoSESAME in Research Training and Technological

Applicationsrdquo Applied Science University Amman-Jordan September 10-12 2006 24 The third Jordanian workshop for synchrotron userrsquos organized by SESAME

Jordanian National Committee (JNC) Amman-Jordan April 25 2007

25 4th International Workshop on Infrared microscopy and Spectroscopy with Accelerator Based Sources (WIRMS) Awaji-Island Hyogo-Japan httpwwwuvsorimsacjpWIRMS2007 September 24 ndash 29 2007

26 Plans for the Wisconsin Free Electron Laser Facility Preliminary Design Performance and Scientific Opportunities (WiFEL) University of Wisconsin-Madison WI (USA) httpwwwwifelwiscedusymposium07indexhtm October 11 2007

27 Synchrotron Radiation Center Userrsquos Meeting University of Wisconsin-Madison WI (USA) httpwwwsrcwiscedumeetingsum2007indexhtm October 12-13 2007

28 Third Jordan National Tempus Day Princes Sumya University of Technology (PSUT) Amman-Jordan March 03 2008

29 Second Meeting of Beamline Coordinators in Amman Allan-Jordan April 09-10 2008

30 The fourth Jordanian workshop for synchrotron userrsquos organized by SESAME Jordanian National Committee (JNC) Jordan University Amman-Jordan June 25 2008

31 Symposium on the Technology of Peaceful Nuclear Energy Organized by Center for Theoretical and Applied Physical Sciences (CTAPS) Yarmouk University Irbid-Jordan httpwwwctapsyuedujoSTPNE October 14-16 2008

32 Symposium on the Future of Climate Changes Organized by Center for Future Studies at Philadelphia University Amman-Jordan October 11 2008

33 Nanostructured advanced materials University of Jordan Amman-Jordan httppeoplephysicsuiucedunayfehindexhtml November 10-13 2008

34 King Hussien Cancer Center (KHCC) 15th International Symposium Gastrointestinal Malignancies Amman-Jordan March 26-27 2009

35 Symposium on the Future of Climate Changes (Part 2) Organized by Center for Future Studies at Philadelphia University Amman-Jordan April 04 2009

36 The fifth Jordanian workshop for synchrotron userrsquos organized by SESAME Jordanian National Committee (JNC) Al-Zaytoonah University Amman-Jordan May 7 2009

37 The fourteenth Jordanian scientific week on Science and technology for sustainable development Amman- Jordan May 3-7 2009

38 Workshop on computational physics using WEIN2K package Yarmouk University Irbid-Jordan August 2 2009

39 The 8th SESAME userrsquos meeting Petra -Jordan November 19-21 2009 40 The sixth Jordanian workshop for synchrotron userrsquos organized by SESAME

Jordanian National Committee (JNC) Jordan University Amman-Jordan May 6 2010

41 The Sixteenth userrsquos meeting amp workshops on Synchrotron Nanoscopy organized by National Synchrotron Radiation Research Center (NSRRC) Hsinchu-Taiwan October 20-22 2010

42 The seventh Jordanian workshop for synchrotron userrsquos organized by SESAME Jordanian National Committee (JNC) Jordan University Amman-Jordan May 5 2011

43 The Seventh Nanoscience and Nanotechnology Conference Organized by the Frame Work Programme (FP7) Istanbul-Turke 27 June-01 July 2011

44 First International Workshop on Machine and Research Aspects of the Proposed Turkish Light Sources Doĝuş University Istanbul ndash Turkey 4-6 July 2011

45 SESAME LinkSCEEM High Performance Computing (HPC) Summer School SESAME-Jordan 17-19 July 2011

46 The 9th SESAME userrsquos meeting and JSPS School Amman -Jordan November 12-16 2011

47 The eighth Jordanian workshop for synchrotron userrsquos organized by SESAME Jordanian National Committee (JNC) Jordan University Amman-Jordan May 3 2012

48 LinkSCEEM User Meeting Road-Show on High Performance Computing (HPC) Organized by the Cyprus Institute (wwwcyiaccy) at Jordan University Amman-Jordan 12 June 2012

49 Second Arab Forum on the Prospects of Electricity Generation and Seawater Desalination Using Nuclear Energy Organized by Jordan Atomic Energy Commission (JAEC) in cooperation with the General Secretariat of the Arab Ministerial Council for Electricity Arab league Amman- Jordan 19-21 June 2012

50 Second LinkSCEEM General User Meeting Organized by the Computational-based Science and Technology Research Center (CaSToRC) of the Cyprus Institute (wwwcyiaccy) Nicosia-Cyprus 25-27 June 2012

51 The Second SESAME LinkSCEEM Summer School on High Performance Computing (HPC) SESAME-Jordan 11-13 September 2012

52 The 10th SESAME userrsquos meeting Amman -Jordan November 07-09 2012 53 The Third LinkSCEEM Cross-Sectional HPC workshop organized by the

LinkSCEEM-2 FP7 project in collaboration with the American University of Cairo (AUC) and the Faculty of Computers and Information ndash Cairo University (FCI-CU) 11-15 November 2012

54 LinkSCEEM User Meeting Road-Show on High Performance Computing (HPC) Organized by the Cyprus Institute (wwwcyiaccy) at Jordan University Amman-Jordan 28 February 2013

55 The National Public Awareness Seminar on Nuclear Energy in Jordan organized by Jordan Atomic Energy Commission (JAEC) Amman-Jordan 12 June 2013

56 The Third SESAME LinkSCEEM Summer School organized by LinkSCEEM-2 FP7 project on High Performance Computing (HPC) and its application on the Synchrotron Radiation fields SESAME-Jordan 08-10 September 2013 httpwwwsesameorgjosesametraining-and-scholarships304-third-sesame-linksceem-summer-schoolhtml

57 ldquoAtoms Molecules and Liferdquo Workshop held in honor of Professor Şakir Erkoccedil sixty-fifth birthday organized by Middle East Technical University-Department of Physics Ankara-Turkey 7 October 2013 httpwwwphysicsmetuedutrerkoc2013

58 Prospects for the Management of State seminar organized by the Center for Future Studies ndash Philadelphia University Amman-Jordan October 26 2013

59 The 11th SESAME userrsquos meeting Amman -Jordan November 20-22 2013 httpwwwsesameorgjosesameevents317-second-announcement-11th-users-meeting-of-sesamehtml

60 The sixth conference on Scientific Research in Jordan organized by Jordan Society for Scientific Research Zaytoonah University Amman ndash Jordan 23 November 2013

61 AWorkshop and seminar by LAUDA company Amman Grand Hayat Hotel Amman ndash Jordan 27 November 2013 wwwlaudacom

62 A Conference on Scientific Computing (CSC 2013) organized PRACE and LINKSCEEM projects in collaboration with the Cyprus Institute Paphos-Cyprus 3-6 December 2013 httpcyprusconferencesorgcsc2013

63 1st ICT thematic Partner Days (H2020) Program Organized by HCST (EU-JordanNet-II) in collaboration with Princess Sumaya University for Technology (PSUT) Amman-Jordan 3-4 February2014 httpwwweu-jordannetjodefaultasp

64 The First IMAN1 HPC userrsquos meeting Amman King Hussein Business Park (KHBP) Building 25 - Jordan Wednesday March 13-03 2014 httpwwwiman1com

65 Support to Research Technological Development and Innovation in Jordan (SRTD-II) and The EU Framework Programme for Research and Innovation (Horizon 2020) Kick-Off Meeting organized by the Higher Council of Science and Technology (HCST) Amman-Jordan 9 June 2014 httphcstgovjocategory_name=srtd-projects

66 The Fourth SESAME LinkSCEEM Summer School on Synchrotron Radiation (SR) and High Performance Computing (HPC) applications Amman - Jordan 15-17 June 2014

67 Second Marie Skoldowska-Curie training event Organized by HCST (EU-JordanNet-II) in collaboration with Princess Sumaya University for Technology (PSUT) Amman-Jordan 23 September 2014 httpwwweu-jordannetjo

68 The twelve SESAME userrsquos meeting Amman -Jordan November 26-27 2014 httpwwwsesameorgjosesamenews347-12th-sesame-users-meetinghtml

69 NMP 2014 Thematic partner days workshop organized by HCST (EU-JordanNet-II) in collaboration with Princess Sumaya University for Technology (PSUT) Amman-Jordan December 16-17 2014 httpwwweu-jordannetjo

70 First Swedish-Jordanian Workshop on atomic molecular and cluster physics with Synchrotron Radiation Hashemite University 25-29 January 2015

71 Food and NMP Brokerage Day 2015 workshop organized by HCST (EU-JordanNet-II) in collaboration with Princess Sumaya University for Technology (PSUT) Amman-Jordan September 10 2015 httpwwweu-jordannetjo

72 The Thirteenth SESAME userrsquos meeting Amman -Jordan November 25-26 2015 httpwwwsesameorgjosesameevents385-13th-sesame-users-meetinghtml

73 The Fourteenth SESAME userrsquos meeting Amman -Jordan December 03-04 2016 httpwwwsesameorgjosesameevents414-14th-sesame-users-meetinghtml

74 The ninth Jordanian workshop for synchrotron userrsquos organized by SESAME Jordanian National Committee (JNC) Jordan University Amman-Jordan May 4 2017

75 The Fifteenth SESAME userrsquos meeting Jerasa Hotel Amman ndashJordan December 18-19 2017

76 Future Prospects for Young People workshop organized by the Center for Future Studies ndash Philadelphia University International Affairs Association Amman-Jordan December 23 2017

77 Future prospects for self-reliance and social change organized by the Center for Future Studies ndash Philadelphia University International Affairs Association Amman-Jordan March 24 2018

78 Ninth International Petra School of Physics - (Nanophysics Fundamentals and Applications) Organized Jointly by the Physics departments of Yarmouk University (Irbid-Jordan) and Jordan University (Amman-Jordan) October 09 -12 2018

79 The Sixteenth SESAME userrsquos meeting Harir Palace Hotel Amman ndash Jordan December 15-16 2018

TEACHING EXPERIENCE The language of instructions is Arabic and English Philadelphia University (Jordan) Department of Basic Sciences amp Mathematics

1998-present Courses Taught Preliminary Physics (Engineering Students) 211099

Applied Physics (Sciences and Engineering Students) 211104 General Physics (Pharmacy Biotechnology and Nursing students) 211105 Linear Algebra (Science and Computer Science students) 250241 Calculus II (Engineering students) 210102

Al-Albayt University (Jordan) Department of Physics 1995-1998 Courses Taught General Physics I and II (Prospective Physics major)

General Physics I and II (Science majors) Mathematical Physics (Graduate students) Physics of Vibrations and Waves (Physics major) Mathematical Physics (Undergraduate Physics major) General Physics Labs I and II (Mechanics Electricity and Magnetism Introductory experiments for Faculty of Science students)

Al-Fateh Private Libyan College (Turkey) 1991-1993 Courses Taught General Physics and Calculus (Secondary School students) Middle East Technical University (Turkey) Department of Physics 1989-1993 Courses Taught General Physics Labs I and II (Mechanics Electricity and

Magnetism Introductory experiments for Science and Engineering students)

Yarmouk University (Jordan) Department of Physics 1985-1986 Courses Taught General Physics Labs I and II (Mechanics Electricity and

Magnetism Introductory experiments for Science Engineering and Pharmacy students)

Other Courses Quantum Mechanics Laser physics

Atomic Physics Electrodynamics Classical Mechanics Solid State Physics Semiconductor Physics

COLLABORATORS amp OTHER PROFESSIONAL AFFILIATIONS Collaborators (1) Prof Carol J Hirschmugl ndash Physics Department ndash University of Wisconsin ndash

Milwaukee (PO Box 413 Phone + 414-229 5748 Fax + 414-229 5589 e-mail cjhirschuwmedu

WWW httpsuwmeduphysicspeoplehirschmugl-carol httpuwmeduengineeringpeoplehirschmugl-ph-d-carol (2) Prof Yao-Chang Lee ndash National Synchrotron Radiation Research Center ndash Research

Division (101 Hsin-Ann Road Hsinchu Science Park Hsinchu 30076 Taiwan ROC) Phone + 886-3-578 0281 ext 7333 Fax + 886-3-578 3813

Mobile +886-921-250566 e-mail ycleensrrcorgtw

WWW httpefdnsrrcorgtwEFDphpnum=250 httpswwwresearchgatenetprofileYao_Chang_Leeinfo

(3) Prof Mohammad A Abbadi ndash Physics Department- Mursquotah University ndash Kerak ndash

Jordan (P O Box 7 Phone +962-6- 4617860 Fax + 962-6- 4654061 e-mail maabbadimutahedujo WWW httpwwwmutahedujoindexphpenfac-science-dept-physicshtml

Graduate and Postdoctoral Advisors (1) Prof Dr Şakir Erkoccedil Physics Department Middle East Technical University 06531 Ankara - Turkey

MSc and PhD Supervisor Direct Telephone + 90 - 312 - 2103285 Fax + 90 - 312 - 2105099 e - mail erkocmetuedutr

WWW httpwwwphysicsmetuedutrAdmissionADM-104

COMPUTER QUALIFICATIONS AND SKILLS Good knowledge and experience in computers The systems and softwarersquos I worked on are

1 Personal Computer (PCrsquos) (Tex Latex Pctex Miktex Grapher Windows Dos Norton Utilities Gnu-plot Pw Igor Omnic Atlus Cytospec Easy plot Macromedia Flash Mx Fireworks Mx Dreamweaver Mx Xcrysden and other softwarersquos)

2 Internet and other softwarersquos 3 Unisys A9F system (Burroughs 6930) 4 IBM (3090) VM XA SP and CMS 5 UNIX AIX version 325 system 6 Knowledge of core skills UNIX shell Compilation Make and Job Submission 7 Cygwin operating system (a UNIX operating system under Windows) 8 Programming with Fortran language 9 Development of algorithms for parallel scientific applications 10 Fair experience with writing scalable codes for scientific applications on

supercomputers 11 Good experience and understanding of parallel computer architectures 12 Humble programming knowledge with OpenMP 31 Application Program

Interface (API) Fortran that supports multi-platform shared memory parallel programming in CC++ and Fortran on all architectures including UNIX platforms and windows NT platforms OpenMPI Fortran

13 Fair experience in Programming Graphical Processing Units (GPU) environments and Open-ACC Programming Fortran

14 Introductory Message Pass Interface (MPI) knowledge and mixed mode OpenMP-MPI programming

15 Code development of scientific programs on physical problems associated with the study of nanomaterials and clusters (ie Material Science in general) for High Performance Computing (HPC)

SYNERGISTEC ACTIVITIES AND CURRICULAR DEVELOPMENT

1 Establishment of Physics Department including the study plans and curriculums for the undergraduate and graduate studies at Al-albayt University in Mafaraq-Jordan

2 Establishment of an interactive undergraduate learning scientific teaching lab including computational tools at the Physics Department - Al-albayt University in Jordan

3 Preparing research labs for postgraduate studies at the Physics Department Al-albayt University (Jordan) with the most sophisticated modern computerized systems (ie VSM VASE XRF hellipetc)

4 Preparing curriculums according to the quality assurance committee requirements at the faculty of science ndash Philadelphia University (Jordan) for excellence in teaching

5 Organizing a series of seminars by inviting a well known professors in different fields to give talks at our campus- one of them on SR radiation by (Prof D Eienfeld) (as a member of the national team for Synchrotron Radiation in Jordan)

6 Owner and founder of the Sesame Infrared Beam Line group at yahoo (httpgroupsyahoocomgroupSesame_IR)

7 Owner and founder of the Sesame Medical Beam Line group at yahoo (httpgroupsyahoocomgroupSesame_MBL)

8 IR Beamline coordinator for the Sesame regional project in Jordan

REFERENCES 1- Prof Şakir Erkoccedil Physics Department Middle East Technical University

06531 Ankara - Turkey MSc and PhD Supervisor Direct Telephone + 90 - 312 - 2103285 Fax + 90 - 312 - 2105099 e ndash mail erkocmetuedutr WWW httpwwwphysicsmetuedutrAdmissionADM-104 2- Prof Carol Hirschmugl ndash University of Wisconsin-Milwaukee- College of Letters and Sciences-Department of Physics- P O Box 413 Milwaukee WI 53201-0413 USA Direct Telephone + 414 - 229- 5748 Fax + 414 - 229- 5589 e ndash mail cjhirschuwmedu WWW httpsuwmeduphysicspeoplehirschmugl-carol

httpuwmeduengineeringpeoplehirschmugl-ph-d-carol 3- Prof Khaled Toukan General Director of Jordan Atomic Energy Commission (JAEC) and Director of (Synchrotron Light for Experimental Science and Applications in the Middle East) - SESAME PO Box 70 Amman 11934 Jordan Phone + 962- 6- 5230978 Fax + 962- 6- 5231017 e-mail contactjaecgovjo WWW httpwwwjaecgovjo 4- Prof Abdul-halim Wriekat Jordan Atomic Energy Commission (JAEC) Commissioner for Nuclear Sciences and Applications Chairman SESAME Jordanian National Committees PO Box 70 Amman 11934 Jordan Phone + 962- 6- 5232514 Fax + 962- 6- 5231017 e-mail wriekatjaecgovjo WWW httpwwwjaecgovjo

5- Prof Yao-Chang Lee ndash National Synchrotron Radiation Research Center ndash Research Division (101 Hsin-Ann Road Hsinchu Science Park Hsinchu 30076 Taiwan ROC) Direct Telephone + 886-3-578 0281 ext 7333 Mobile +886-921-250566 Fax + 886-3-578 3813 e-mail ycleensrrcorgtw WWW httpwwwnsrrcorgtw

httpefdnsrrcorgtwEFDphpnum=250 httpswwwresearchgatenetprofileYao_Chang_Leeinfo

SERVICE University Level

1 Member University Council (Philadelphia University 2003-2004 2005-2006 2018 2019)

2 Member Seminars Committee (Philadelphia University) 3 Member Graduation Committee (Philadelphia University) 4 Member Yearbook Committee (Al-albayt University and Philadelphia

University) 5 Member Scientific Research Committee (Al-albayt University) 6 Member University Tenders and Equipmentrsquos (Al-albayt University) 7 Member Library Committee (Al-albayt University) 8 Member University Elections Committee (Students Affairs Al-albayt

University) 9 Member Scientific Research Council (Philadelphia University 2009 2012 2013

2014) 10 Member Electronic Website Higher Committee (Philadelphia University 2018

2019) 11 Member Renewable Energy Center Council (Philadelphia University 2018

2019) Departmental level

1 Member Department Laboratories Equipmentrsquos and Supplies Committee (Physics Department Al-albayt University)

2 Member Graduate Program Committee and Advisor (Physics Department Al-albayt University)

3 Member Scientific Research Committee (Philadelphia University 2003-2004-2005-2006-2007-2008-2009-2010-2011-2012-2013-2014 2018 2019)

4 Member and Chair Electronic Website Committee (Philadelphia University-Department of Basic Sciences and Mathematics 2017-2018 2018-2019 2019-2020)

5 Member Buildings safety and Security Committee (Philadelphia University- Department of Basic Sciences and Mathematics 2015 2016 2017)

Faculty and Professional level

1 Member National Team for Synchrotron Radiation Project in Jordan 2 Member Jordanian National Scientific Committee- International Center for

Synchrotron Radiation 3 Member XRF EXAFS and IR Beamline Groups SESAME Project-Jordan 4 Member Faculty of Science Council (Philadelphia University 2006-2007 2013

2014) 5 Member Scientific Research Council (Philadelphia University 2008-2009

2012-2013) 6 Chairman Scientific Research Committee ndash Faculty of Science (Philadelphia

University 2008-2009 2012-2013) 7 Assistant Chairman for the Department of Basic Sciences (Philadelphia

University - Labs Affairs) 8 Member Quality Assurance Committee (QAC) - Faculty of Science (Philadelphia

University 2007-2009) 9 Member Web and Internet Committee- Faculty of Science (Philadelphia

University 2006-2009) 10 Member Jordanian - Egyptian Committee for Synchrotron Radiation 2009 11 Chairman Science Day Committee - Faculty of Science (Philadelphia University

2010) 12 Member and Chair Electronic Website Committee - Faculty of Science

(Philadelphia University 2017 2018 2019 2020) 13 Member and Chair Strategic Committee and Planning - Faculty of Science

(Philadelphia University 2017 2018 2019-2020) 14 Member Scientific Research Committee ndash Faculty of Science (Philadelphia

University 2018 2019) Community level

1 Coordinator Jordanian IR Beamline Group I have organized several meetings for colleagues and researchers in the Jordanian institutions and hospitals to prepare ourselves and discuss the latest in the IR microspectroscopy and its applications in sciences mainly medical and biological applications once the IR beamline is constructed at the SESAME project in Jordan

End of my CV

MSc AND PhD ABSTRACTS

ABSTRACT

DEVELOPMENT OF A SEMI-EMPIRICAL

POTENTIAL ENERGY FUNCTION APPLICATIONS TO MICROCLUSTERS

Zuheir El-bayyari

MS in physics Supervisor Assoc Prof Dr Şaker Erkoccedil

1987 191 pages

Many-body effects are essential for the description of atomic clusters for most real materials We have developed a Potential Energy Function (PEF) which includes the many-body effect via a parameterized three-body term Thus the present (PEF) includes both two- and three-body terms parameterized to fit cluster and bulk thermodynamic data for their respective systems Using the definition of cohesive energy stability condition for crystals and the bulk modulus we solve for the PEF parameters which are used in the cluster calculations for binding energies and bond lengths A parametrical analysis was performed to investigate the energetically most stable micro-cluster structures for different elements as Al Cu Ni Au Fe and Si composed of three and four atoms

ABSTRACT

MOLECULAR-DYNAMICS COMPUTER SIMULATION OF ALUMINUM

BULK SURFACE AND CLUSTER PROPERTIES

El-bayyari Zuheir Subhi

Ph D in Physics Supervisor Prof Dr Şaker Erkoccedil

April 1993 46 pages

We have investigated the bulk surface and cluster properties of aluminum using the Molecular-Dynamics technique In the simulation a recently developed empirical many- body potential energy function has been used which contains two- and three- body atomic interactions The bulk properties specific heat capacity and vacancy formation energy have been calculated and the surface properties surface energy surface vacancy and ad-atoms on the (001) surface have been investigated For clusters the structural stability and energetics of Aln (n=3-55) clusters have been investigated at low temperature T= 1 K It has been found that the energetically most stable structures of aluminum clusters are in compact distorted buckled form For bulk surface and cluster properties the present results are qualitatively in agreement with available literature values Keywords Molecular-Dynamics Simulation Empirical Many-Body Potential Energy Function Nordsieck-Gear Algorithm Aluminum Properties Bulk Surface Cluster Science Code 4040501 NEW ADOPTED EXPERIMENTAL FIELD OF RESEARCH WITH IR MICROSPECTROSCOPY (ABSTARCTS)

SYNCHROTRON INFRAED MICROSPECROSCOPY IMAGING USING A MULTI-ELEMENT DETECTOR (IRMSI-MED) FOR

DIFFRACTION -LIMITYED CHEMICAL IMAGING M J Nasse12 R Reininger4 T Kubala2 S Janowski2 Z El-Bayyari123 and C Hirschmugl1

1Dept of Physics UW-Milwaukee Milwaukee WI 53211 2Synchrotron Radiation Center UW-Madison Stoughton WI 53589

3Dept of Basic Sciences Philadelphia University Amman19392 Jordan 4Scientific Answers amp Solutions Madison WI 53711

Examining kinetics of living cells (phytoplankton) fungi and bacteria-mineral interactions requires the ability to image sufficiently large sample areas encompassing even large whole cells quickly on biological time scales The brilliance of the synchrotron is critical to provide sufficient flux density to obtain diffraction limited images on such short time scales (in under a minute) Multiple overlapping beams are used to homogenously illuminate the sample area imaged onto a multi-element detector (MED) The University of WisconsinndashMilwaukee is designing and installing a mid-infrared (IR) beamline IRMSI-MED that will extract 320 hor x 25 vert mrad2 from a dedicated bending magnet (BM) at the Synchrotron Radiation Center Fig 1 a cartoon and Fig 2 a technical drawing show an overview of the new beamline BM radiation is collected with 12 toroidal mirrors (M1) redirected by plane mirrors (M2) collimated by paraboloidal mirrors (M3) and rearranged by another set of plane mirrors (M4) and illuminates a spot of 60 x 40 microm2 at the sample plane of a commercial IR microscope The 12 beams exit the UHV chamber through 12 ZnSe windows (W) entering a purged area Fig 3 shows a simulation of the intensity distribution created by the overlapping 12 beams (defocused) at the sample plane Proof of principle experiments using an existing beamline at the NSLS have been performed by Carr et al [1] This project has a potential to impact a wide variety of research areas ranging from soft matter condensed physics nanoscience biology chemistry veterinary science engineering environmental science and geology This work is supported by the NSF under Award No DMR-0619759 Part of this work is conducted at the Synchrotron Radiation Center which is supported by the NSF under Award No DMR-0537588

References [1] G L Carr L Miller R Smith R Jackson and T Tague Jr private communication

Figure 1 Schematic (not to scale) of the new IRMSI-MED beamline at the SRC For clarity only 4 out of the 12 M4 mirrors are shown (cf text)

Figure 2 CAD drawing of the new IRMSI-MED beamline at the SRC PS 3 photon shutters V vacuum valve FL flange for ion pump (not shown for clarity) QP 2 quadrupoles SP 2 sextupoles (rest cf text)

Figure3Simulated image plot of the photon intensity (energy 01 eV) at the sample plane

RAPID ASSESSMENT OF RESOURCE PARTITIONING IN ALGAE

WITH IR MICROSPECTROSCOPY Z El-Bayyari123 M J Nasse13 R Julian3 A Norici4 S Ratti4C Hirschmugl1

and M Giordano4 1Dept of Physics UW-Milwaukee Milwaukee WI 53211

2Dept of Basic Sciences Philadelphia University Amman19392 Jordan 3Synchrotron Radiation Center UW-Madison Stoughton WI 53589

4Dipartimento Scienze del Mare Universitaacute Politecnica delle Marche Ancona 60131 Italy We use an IR synchrotron based microscope to address a central problem in cell biology the

strategies adopted by cells (in this case algal cells) to allocate and partition their resources in response to changes in environmental availability Using FTIR spectroscopy for this scientific problem facilitates an understanding of the related physiological responses in an unperturbed cell environment

Phytoplankton represents a major biological sink for atmospheric CO2 In the experiments presented here ambient and elevated levels of CO2 are used and we focus on C and N as the main resources of the cells Relative amounts of these elements available to algae change appreciably as a consequence of changes in CO2 concentration in the atmosphere Since CO2 acquisition represents a major sink for cell energy and affects use efficiency of most other nutrients especially N the investigation does not simply identify the effects of changing CO2 or N availability but focuses on

the effect of the CN ratio on resource partitioning and allocation Traditional methods for gaining insight into the resource partitioning and

allocation are difficult because they require complex physiologicalbiochemical approaches or invasive manipulation of cells which in addition to being very time consuming and cumbersome are also potential causes for artifacts The application of FTIR spectromicroscopy makes it possible to rapidly study allocation and partitioning of resources in intact cells without the necessity of extracting their chemical components

Protoceratium reticulatum a potentially toxic species of microalgae (approx 40 x 40 microns) was examined under varying CO2 conditions keeping the nitrogen source (nitrate) constant The CO2 content in the gas phase during the growth of the algal cells was varied from ambient (004)

through 05 Infrared microspectroscopy of cells that were fixed with Lugols solution reveals increasing carbohydrate-to-protein ratios with increasing CO2 concentration This is consistent with the increase in the carbon-to-nitrogen ratios supplied during growth

In Fig 1 distributions of lipids (CH CH2 and CH3 stretches) proteins (amide 1) and carbohydrates (COC stretching) are shown for two cells grown in 01 CO2 The colorintensity scales of the maps show the peak positionintegrated area of the specific peak for each image respectively Note the variations in the distributions of the different macromolecular pools

This work is supported by the NSF under Award No DMR-0619759 Part

of this work is conducted at the Synchrotron Radiation Center which is supported by the NSF under Award No DMR-0537588

Figure 1 Panel (a) shows two Protoceratium reticula-tum cells and panel (e) displays a general colorintensity map cor-responding to peak position integrated intensities Panels (b-d) display lipid panel (f) displays protein and panel (g) displays carbohydrate distributions

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

Position (micrometers)=3404 microm387 microm

Flow Cell Design for IR Microspectroscopy of Living Biological Cells

Z El-Bayyari123 M J Nasse13 S Ratti4 and C Hirschmugl1 1Department of Physics University of Wisconsin-Milwaukee Milwaukee (WI)53201 USA

2Department of Basic Sciences Philadelphia University Amman19392 Jordan 3Synchrotron Radiation Center University of Wisconsin ndash Madison Stoughton (WI)53589 USA

4Dipartimento Scienze del Mare Universitaacute Politecnica delle Marche Ancona60131 Italy

To date it is not possible to measure the entire mid-IR spectral range under controlled aqueous environs Commercial solutions use thick windows (3mm or thicker) which require long working distances for the IR and prevent acquisition of high resolution visible images Window materials that transmit the mid- IR range pose several problems they are either hygroscopic or disperseabsorb portions of the bandwidth of interest

A new flow cell has been designed to measure living cells under controlled aqueous environs providing high quality data for the entire mid-IR spectral range (Fig 1 and 2) The flow cell features a slim profile which accommodates small working distances down to 06 mm above the cell and 6 mm below the cell This allows measurements at high magnification for both transmission and reflection geometries in the IR (eg 32x 74x) and visible (up to 100x) We have selected sub-micron thick diamond windows due to their excellent transmission properties over the entire IR and visible spectral ranges and to minimize fringing effects A peristaltic pump can be coupled to the flow cell to provide exchange of medium every minute changing the environs on demand An image of an algal cell corresponding IR images and IR spectrum are displayed in Fig 3

This work is supported by the NSF under Award No DMR-0619759 Part of this work is conducted at the Synchrotron Radiation Center which is supported by the NSF under Award No DMR-0537588

Fig 1 Three quarter section view of the flow cell (gray base blue lid dark gray silicon yellow diamond red spacer magenta rubber seals) between objective and condenser (green with red light beam NA=065)

Fig 2 Photo of the working flow cell with the diamond window (usable aperture ~1 cm) and the water in-outlet tubes

Fig 3 Microspectroscopic map of a single Micrasterias alga panel (a) shows a visible light photo in transmission (32x Schwarzschild objective) panel (b) lipid (2810 cm-1 ndash 2979 cm-1) (c) amide 2 (1514 cm-1 ndash 1585 cm-1) and (d) carbohydrate (968 cm-1 ndash 1121 cm-1) distributions Panel (e) displays the spectrum at the location of the red crosshair in (a ndash d)

An Innovative Kinetic Study of Early Breast Cancer Detection Using

Infrared Microspectroscopy Synchrotron Radiation Based

Zuheir El-bayyari 12 and Yao-Chang lee 1 1 National Synchrotron Radiation Research Center (NSRRC) Experimental Facility Division

Biomedical Molecular Imaging Group 101 Hsin Ann Rd Hsinchu Science Park Hsinchu 30076 Taiwan ROC

ycleensrrcorgtw 2 Philadelphia University Faculty of Science Department of Basic Sciences and Mathematics

Amman 19392 Jordan zbayyarirocketmailcom

The organic composition of tissues and cells can be satisfactorily determined with the use of Fourier Transform Infrared (FTIR) microspectroscopy This technique combines IR spectroscopy and microspectroscopy enabling the determination of the biochemical composition in small sample areas Infrared spectroscopy can identify specific molecular functional groups associated with specific organic materials Therefore FTIR microspectroscopy is a unique resource to provide a global analysis of the organic content of biological samples (proteins lipids carbohydrates nucleic acids) The 2D mapping and imaging capability is particularly important offering a few micrometers lateral spatial resolution as seen in Figure 1 Accordingly there has been increasing interest in using FTIR microspectroscopy especially form a synchrotron radiation source for studies in medical research of single cells cancer tissues and neurological disorder

Earlier works done on the distinction of normal and abnormal tissues based on spectral differences in the Mid-IR region have focused on the wavenumbers from 600 to 1800 cmminus1 However it is also obvious that the altered rate of multiplication of cancer cells will result in the alteration of lipid profiles and total biochemical composition in the tissues as these are constituents of the membranes and cell organelles that divide during cancer Some workers have reported variations in intensities in the region 2800 to 3200

(a) (b) (c)

(d) (e) (f)

Fig 1 (a) A visible image of Hematoxylin amp Eosin (HampE) stained breast cancer tissue showing two DCIS (Ductal Carcinoma in Situ and lymph node of 2050 microm x 1600 microm Panel (b) shows a chemical image of νas PO2

-(DNARNA) at 1229 cm-1(c) νs PO2

-(DNARNA) at 1082 cm-1 (d) δCH3 at 1448 cm-1 (e) δCH2 at 1331 cm-1 and (f) Glycogen at 1030 cm-1 The red crosshair in (bndashf) indicates the location of the components measured

cmminus1 in studies of celltissues and derived parameters from these intensities for their studies among which the CH3CH2 ratio is prominent In the present work we use data from breast cancer biopsies treated with paraffin during their standard treatment to be monitored through FTIR spectroscopy from a synchrotron radiation source and a globar source Thus we aim to prove that the biochemical variations during carcinogenesis may give a remarkable universal feature in the higher wavenumber region and therefore can be used for disease identification without revealing any results of our work due to patent registration publication of our results and further investigations at this stage

CULUTURAL EDUCATIONAL amp PROFESSIONAL AFFILIATIONS

Mutah Lil-Buhūth Wad-Dirāsāt 16 No 1 83-95 (2001)

INVITED AND PRESENTED SEMINARS

1 Middle East Technical University (Turkey) Department of Physics October 1987 ldquoDevelopment of a Semi - Empirical Potential Energy Function Applications to Micro-clustersrdquo



















CONFERENCES

COLLABORATORS amp OTHER PROFESSIONAL AFFILIATIONS


REFERENCES

SYNCHROTRON INFRAED MICROSPECROSCOPY IMAGING USING A MULTI-ELEMENT DETECTOR (IRMSI-MED) FOR DIFFRACTION -LIMITYED CHEMICAL IMAGING

RAPID ASSESSMENT OF RESOURCE PARTITIONING IN ALGAE WITH IR MICROSPECTROSCOPY


Middle East Technical University (Ankara-Turkey) MSc 16121987 Atomic and Molecular Physics (Computational Nanomaterialrsquos Solid State Physics ) Thesis Development of A Semi-Empirical Potential Energy Function Application to Microclusters

Yarmouk University (Irbid-Jordan) BSc Physics 2361984 GPA 745100

KNOWLEDGE OF LANGUAGES Mother tongue Second language Other languages Arabic V Good English V Good Turkish Good Turkish language is learned personally during my living in Turkey The language of instructions for my graduate studies is English PRSENT POSITION Associate Professor of Physics Department of Basic Sciences and Mathematics Faculty of Science Philadelphia University Aein Al-basha 19392 Jordan PROFESSIONAL EXPERIENCE Associate Professor of Physics Philadelphia University (Jordan) 2005 - Present Head of Department of Basic Sciences and Mathematics Faculty of Science Philadelphia University Ayin Al-basha 19392 Jordan 05 032013 - 3182014 Visiting Professor National Synchrotron Radiation Research Center (NSRRC) Taiwan 01072010 - 31122010 Visiting Scholar University of Wisconsin-Milwaukee amp Madison (USA) 02072007 - 02012008 Visiting Scholar University of Wisconsin-Milwaukee (USA) 01032004 - 30092004 Assistant Professor of Physics Philadelphia University Faculty of Science (Jordan) 01091998 - 03042005 Assistant Professor of Physics Al-Albayt University (Jordan) 1995 - 1998 Lecturer Al-Fateh Private Libyan College (Turkey) 1991 - 1993

orcidorg0000-0003-2525-259X

7 Z El-Bayyari

End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

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7 Z El-Bayyari

End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

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(a) (b) (c)

(d) (e) (f)






















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REFERENCES




orcidorg0000-0003-2525-259X

7 Z El-Bayyari

End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















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REFERENCES




7 Z El-Bayyari

End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















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REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















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REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















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REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




End of my CV

ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




ABSTRACT

Zuheir El-bayyari

1987 191 pages

ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




ABSTRACT

April 1993 46 pages

3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















CONFERENCES



REFERENCES




3000 2800 2600 2400 2200 2000 1800 1600 1400 1200 1000 800

(a) (b) (c)

(d) (e) (f)






















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(a) (b) (c)

(d) (e) (f)






















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(a) (b) (c)

(d) (e) (f)






















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(d) (e) (f)






















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Documents

Zuheir Subhi El-bayyari, Ph fileZuheir Subhi El-bayyari, Ph