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Zoonotic Causes of NonMalarial Febrile Illness Paul Holland, Sarah Cleaveland, Jo Halliday Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, United Kingdom University of Glasgow, charity number SC004401 Introduction Methods Results References Conclusions Fig. 2 Visual representation of the initial Fever and Zoonoses search output showing the number of unique publications in each year. Zoonoses Publication Effort Over Time of results from the initial Fever + Zoonoses search Initial Search We constructed two search concepts (Fever and Zoonoses) and queried each database for references containing both of these concepts. The resulting references were combined and deduplicated using an R script to generate 1915 unique references from which all subject headings were extracted. Each subject heading was classified by two independent reviewers to generate a list of distinct pathogens/diseases. Individual Pathogen/Disease Searches To search for individual pathogens we compiled a list of zoonoses that cause fever from the following sources: • WHO listed diseases (zoonoses and public health) 3 • OIE listed diseases known to be zoonotic 4 • subject headings from the initial search The zoonotic status of each pathogen was checked against an existing database 5 . Search syntax for a total of 62 pathogen/disease concepts was formulated. The results of the initial search revealed a trend of increasing publication effort on zoonoses in recent years (Fig. 2), consistent with previous findings 8 . There has been a considerable increase in the publication effort on zoonotic causes of fever. It is important that efforts are made to ensure that this increasing academic awareness of the importance of zoonoses as causes of significant human illness is translated to inform clinical practice. We present some points of discussion regarding the groups defined in Fig 3: A: Apparently important zoonotic causes of fever may provide direction to prioritise research into burden assessments and diagnostic test development. B: Clearly important human pathogens helpful to develop techniques to understand the proportion of human cases attributable to zoonotic transmission. C:& D: Less frequently published in association with reports of human fever which may indicate less importance; however, many pathogens in these areas are considered neglected efforts to determine if these pose a greater zoonotic threat than is currently reported may be worthwhile. The next step in this project will be to identify retrieved articles that match a strictly defined inclusion criteria. A detailed review will be conducted to collate and present the available quantitative data. Gaps in knowledge may suggest possible directions for future research effort and funding. 1. Reyburn H, Mbatia R, Drakeley C, Carneiro I, Mwakasungula E, Mwerinde O, et al. Overdiagnosis of malaria in patients with severe febrile illness in Tanzania: a prospective study. BMJ. 2004 Nov 20;329(7476):1212. 2. John K, Kazwala R, Mfinanga GS. Knowledge of causes, clinical features and diagnosis of common zoonoses among medical practitioners in Tanzania. BMC Infect Dis. 2008 Jan;8:162. 3. WHO | Diseases [Internet]. [place unknown]: World Health Organization; 2010 Dec 1 [cited 2012 Aug 30]. Available from: http://www.who.int/zoonoses/diseases/en/ 4. OIE Listed diseases 2012: OIE World Organisation for Animal Health [Internet]. [place unknown]: Office International des Epizooties; 2012 [cited 2012 Aug 30]. Available from: http://www.oie.int/animalhealthintheworld/oielisteddiseases2012/ 5. Cleaveland S, Laurenson MK, Taylor LH. Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Philos Trans R Soc Lond B Biol Sci. 2001 Jul 29;356(1411):991–9. 6. Murray CJL, Rosenfeld LC, Lim SS, Andrews KG, Foreman KJ, Haring D, et al. Global malaria mortality between 1980 and 2010: a systematic analysis. Lancet. 2012 Feb 4;379(9814):413–31. 7. WHO | World Malaria Report 2011 [Internet]. [place unknown]: World Health Organization; 2012 Feb 21 [cited 2012 Aug 30]. Available from: http://www.who.int/malaria/world_malaria_report_2011/en/ 8. Vrbova L, Stephen C, Kasman N, Boehnke R, DoyleWaters M, ChablittClark a, et al. Systematic review of surveillance systems for emerging zoonoses. Transbound Emerg Dis. 2010 Jun;57(3):154–61. Recent studies have shown that malaria is considerably overdiagnosed as a cause of fever 1 and that zoonotic causes are often not considered by clinicians who may have limited awareness of zoonoses and few appropriate diagnostic tests 2 . The aim of this project was to conduct a systematic review of newly published data on zoonotic causes of fever. We examine the recent publication history of a range of zoonoses to examine the degree to which different pathogens are considered as a cause of human fever and which are most frequently identified as zoonoses. Search Limits Pathogen specific searches were limited to retrieve references pertaining to human subjects only and to retrieve only those articles published between 20042012, a documented period of global malaria decline 6 . Searches were also limited geographically using a search concept constructed to capture all countries in which malaria is considered endemic (informed by the WHO World Malaria Report 7 (Fig 1.), or the broader term Africa, the principle area of interest. Zoonotic Proportions To demonstrate the number and proportion of references for each pathogen that are described/identified as zoonotic, pairs of searches (X & Y) were run for each individual pathogen and the number of references generated from each search were recorded: X: Pathogen + Fever Y : Pathogen + Fever + Zoonoses Fig. 3 shows the number of references retrieved from the X & Y searches for each individual zoonotic pathogen and indicates the proportion of references retrieved in search X that were also retrieved in search Y (including the additional Zoonoses search term). Several distinct pathogen groups can be observed: A: Pathogens with both large numbers of references in search X and high proportions of retrieved articles defined as zoonotic. B: For pathogens with the highest numbers of references retrieved, the proportion catalogued as zoonotic was often quite low. C: Pathogens with relatively few total publications and a high proportion tagged as zoonotic. Fig. 1 World map showing those countries defined by the WHO as malaria endemic filled in red. WHO Defined Malaria Endemic Countries B C A D We queried two well known databases (MEDLINE and EMBASE) with carefully constructed search concepts and tabulated the number of references resulting from each search. search X search Y Fig. 3 Scatterplot showing log number of references retrieved from the X & Y searches for each pathogen. The dotted line represents the upper limit of 100% of search X references being "tagged" as zoonotic (also retrieved in search Y). The text next to each point indicates the pathogen/disease name. D: Pathogens with the fewest overall references and a low proportion of these identified as zoonotic.

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Page 1: Zoonotic Causes of NonMalarial Febrile Illness

Zoonotic Causes of Non­Malarial Febrile IllnessPaul Holland, Sarah Cleaveland, Jo Halliday

Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, United Kingdom

University of Glasgow, charity number SC004401

Introduction

Methods

Results

References

Conclusions

Fig. 2 ­ Visual representation of the initial Fever and Zoonosessearch output showing the number of unique publications ineach year.

Zoonoses Publication Effort Over Timeof results from the initial Fever + Zoonoses search

Initial SearchWe constructed two search concepts (Fever

and Zoonoses) and queried each database forreferences containing both of these concepts.The resulting references were combined andde­duplicated using an R script to generate1915 unique references from which all subjectheadings were extracted. Each subject headingwas classified by two independent reviewers togenerate a list of distinct pathogens/diseases.Individual Pathogen/Disease Searches

To search for individual pathogens wecompiled a list of zoonoses that cause feverfrom the following sources:• WHO listed diseases (zoonoses and public health)3• OIE listed diseases known to be zoonotic4• subject headings from the initial search

The zoonotic status of each pathogen waschecked against an existing database5. Searchsyntax for a total of 62 pathogen/diseaseconcepts was formulated.

The results of the initial search revealed atrend of increasing publication effort onzoonoses in recent years (Fig. 2), consistentwith previous findings8.

There has been a considerable increase inthe publication effort on zoonotic causes offever. It is important that efforts are made toensure that this increasing academicawareness of the importance of zoonoses ascauses of significant human illness is translatedto inform clinical practice. We present somepoints of discussion regarding the groupsdefined in Fig 3:A: Apparently important zoonotic causes offever ­ may provide direction to prioritiseresearch into burden assessments anddiagnostic test development.B: Clearly important human pathogens ­ helpfulto develop techniques to understand theproportion of human cases attributable tozoonotic transmission.C: & D: Less frequently published inassociation with reports of human fever whichmay indicate less importance; however, manypathogens in these areas are consideredneglected ­ efforts to determine if these pose agreater zoonotic threat than is currentlyreported may be worthwhile.

The next step in this project will be toidentify retrieved articles that match a strictlydefined inclusion criteria. A detailed review willbe conducted to collate and present theavailable quantitative data. Gaps in knowledgemay suggest possible directions for futureresearch effort and funding.

1. Reyburn H, Mbatia R, Drakeley C, Carneiro I, Mwakasungula E, Mwerinde O, et al. Overdiagnosis of malaria in patients with severe febrile illness in Tanzania: a prospective study. BMJ. 2004 Nov 20;329(7476):1212.2. John K, Kazwala R, Mfinanga GS. Knowledge of causes, clinical features and diagnosis of common zoonoses among medical practitioners in Tanzania. BMC Infect Dis. 2008 Jan;8:162.3. WHO | Diseases [Internet]. [place unknown]: World Health Organization; 2010 Dec 1 [cited 2012 Aug 30]. Available from: http://www.who.int/zoonoses/diseases/en/4. OIE Listed diseases 2012: OIE ­ World Organisation for Animal Health [Internet]. [place unknown]: Office International des Epizooties; 2012 [cited 2012 Aug 30]. Available from: http://www.oie.int/animal­health­in­the­world/oie­listed­diseases­2012/5. Cleaveland S, Laurenson MK, Taylor LH. Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Philos Trans R Soc Lond B Biol Sci. 2001 Jul 29;356(1411):991–9.6. Murray CJL, Rosenfeld LC, Lim SS, Andrews KG, Foreman KJ, Haring D, et al. Global malaria mortality between 1980 and 2010: a systematic analysis. Lancet. 2012 Feb 4;379(9814):413–31.7. WHO | World Malaria Report 2011 [Internet]. [place unknown]: World Health Organization; 2012 Feb 21 [cited 2012 Aug 30]. Available from: http://www.who.int/malaria/world_malaria_report_2011/en/8. Vrbova L, Stephen C, Kasman N, Boehnke R, Doyle­Waters M, Chablitt­Clark a, et al. Systematic review of surveillance systems for emerging zoonoses. Transbound Emerg Dis. 2010 Jun;57(3):154–61.

Recent studies have shown that malaria isconsiderably overdiagnosed as a cause offever1 and that zoonotic causes are often notconsidered by clinicians who may have limitedawareness of zoonoses and few appropriatediagnostic tests2. The aim of this project was toconduct a systematic review of newly publisheddata on zoonotic causes of fever. We examinethe recent publication history of a range ofzoonoses to examine the degree to whichdifferent pathogens are considered as a causeof human fever and which are most frequentlyidentified as zoonoses.

Search LimitsPathogen specific searches were limited to

retrieve references pertaining to humansubjects only and to retrieve only those articlespublished between 2004­2012, a documentedperiod of global malaria decline6. Searcheswere also limited geographically using a searchconcept constructed to capture all countries inwhich malaria is considered endemic (informedby the WHO World Malaria Report7 (Fig 1.), orthe broader term Africa, the principle area ofinterest.Zoonotic Proportions

To demonstrate the number and proportionof references for each pathogen that aredescribed/identified as zoonotic, pairs ofsearches (X & Y) were run for each individualpathogen and the number of referencesgenerated from each search were recorded:X: Pathogen + FeverY: Pathogen + Fever + Zoonoses

Fig. 3 shows the number of referencesretrieved from the X & Y searches for eachindividual zoonotic pathogen and indicates theproportion of references retrieved in search Xthat were also retrieved in search Y (includingthe additional Zoonoses search term). Severaldistinct pathogen groups can be observed:A: Pathogens with both large numbers ofreferences in search X and high proportions ofretrieved articles defined as zoonotic.B: For pathogens with the highest numbers ofreferences retrieved, the proportion cataloguedas zoonotic was often quite low.C: Pathogens with relatively few totalpublications and a high proportion tagged aszoonotic.

Fig. 1 ­ World map showing those countries defined by theWHO as malaria endemic filled in red.

WHO Defined Malaria Endemic Countries

BC

A

DWe queried two well known databases

(MEDLINE and EMBASE) with carefullyconstructed search concepts and tabulated thenumber of references resulting from eachsearch.

search Xsea

rchY

Fig. 3 ­ Scatterplot showing log number of references retrievedfrom the X & Y searches for each pathogen. The dotted linerepresents the upper limit of 100% of search X referencesbeing "tagged" as zoonotic (also retrieved in search Y). Thetext next to each point indicates the pathogen/disease name.

D: Pathogens with the fewest overallreferences and a low proportion of theseidentified as zoonotic.