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www.monash.edu.au
Andrew Treloar, ARCHER Project DirectorCathrine Harboe-Ree, University LibrarianAlan McMeekin, Executive Director ITS
Dancing with data down under
CNI Winter 2007 Project Briefing
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O is for Overview
• Drivers for what we are presenting• Research case study overview• Challenges and solutions• Australian national developments
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D is for Drivers
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D: Monash – a distinctive and internationalised university
• Established 1960
• Research intensive, doctoral granting
• 55,000 students from more than 100 countries
• 6.1% of student load is graduate
• 3,500 academic staff (6,800 total EFT staff)
• 10 faculties
• Campuses in Australia (six), Malaysia, South Africa, centre in Prato
• Partnerships – India, Hong Kong, Singapore, China
• Total research income $186 mill. (2006)
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D: Information Management Strategy
• 2 year initiative to develop an overarching strategy for the whole university
• Took holistic view of information• Informed by views of range of information
management professionals and stakeholders• Report available at:
www.monash.edu.au/staff/information-management/• Based on set of ten principles that have been extended
into the research data domain
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D: Monash data management environment
• High level support– DVC (Research), Prof Edwina Cornish– Establishment of E-Research Centre
• Need to manage growing deluge– Leading E-researchers in some disciplines – Synchrotron (1 TB per day)– Shoah Archives (12 TB)– And others
• Need to respond to Australian Code for the Responsible Conduct of Research
– www.nhmrc.gov.au/publications/synopses/r39syn.htm
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Source: Adapted from Liz Lyon, eBank UK Presentation
Grid
E-Researchers
Entire E-Research LifeCycleEncompassing experimentation, analysis, publication, research, learning
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Institutional Archive
LocalWebPublisher
Holdings
Digital Library
E-ResearchersGraduate Students
Virtual Learning Environment
E-Experimentation
E-
Technical Reports
Reprints
Peer-Reviewed Journal & Conference Papers
Preprints & Metadata
Certified Experimental Results & Analyses
Data, Metadata & Ontologies
DARTDART
ARROWARROW
ARCHERARCHER
D: Three inter-related national projects
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R is for Research case study
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R: Structure determines function
Unfolded protein is chain of amino acids
• Highly mobile• Inactive
Sequence
Folded protein
• Precise shape• Stable• Highly ordered• Active
Structure
Function depends on protein shape
• Specific associations• Precise reactions
Function
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R: Flow of biological Information
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R: How to solve a structure
Fourier synthesis Electron densityPhases+
Experimental methods = back to lab
Use known structures (molecular replacement)
3D structure
Diffraction intensities
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R: Resulting publication in Science
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R: Access Statistics: 23/8/2007 to 1/12/2007
• Views: 918 total– 257 from library staff
– 152 from other Monash addresses
– 509 from non-Monash addresses
• Downloads: 498 total– 87 from library staff
– 62 from other Monash addresses
– 349 from non-Monash addresses
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R: Why he cares about data
• Raw data are sacred• Data validation for reviewers and by peers• His data are now safe and secure• Store of examples for those doing methods
development• Some data cannot be processed by him;
why not let others have a go?
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C is for Challenges and Solutions
• Laboratory data management practice• Institutional data management planning• Sustainable storage provision• Data curation across data stores• Data in institutional repositories
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C: Laboratory data management practice
• Challenge– Infrequent and deficient backup– No commitment to long-term preservation– Poor recording of metadata
(descriptive/provenance)• Solution
– Embed IM professionals with research teams– Provide sustainable storage for backup– Improve laboratory data capture systems
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C: Institutional data management planning
• Challenge– No systematic organisation-wide approach– No way of engaging with researchers
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S: Institutional forum to discuss issues
• Membership– Library
– ITS
– Records and Archives
– Research Office
– e-Research Centre
• Outputs– Policy and Plan (print trial, web production)
– Outreach activities
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S: Data Management Plan – objectives
• Assists both researcher and institution• Is completed at beginning of research project,
updated as necessary– May become mandatory in future
• Captures some technical, access and descriptive metadata at the beginning of research project
• Is not onerous• Delivers visible benefits • Assists in providing complete research data solutions
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S: Data Management Plan – components
• Originators and owners of the data• Description of project• Metadata used (schema, standards)• Types of data to be collected• Volume of data (initial estimate)• Retention requirements (guidelines provided)• Format/s of and software used in creation and use of the
data • Access policies and provisions• IP constraints• Confidentiality requirements• Storage, preservation and archiving of data
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C: Sustainable storage provision
• Challenge– Need sustainable way to provide large (terabyte)
amounts of storage for researchers– Make this more financially attractive than JBOD
under desk • Solution
– Large Research Data Storage (LaRDS)
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C: LaRDS requirements
• Addresses institutional and researcher needs• Formulates a set of principles to guide cost
modelling and sustainable funding options• Assumes commitment to storage in perpetuity
– or “as long as required”, whichever comes first ;-) • Adopts a central storage model …
– Centrally funded basic allowance, plus– Directly charged excess allowance
• … in parallel with decentralised storage• 700 TB and growing
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C: Different stores for different domains
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C: Data in institutional repositories
• Challenge– Most IRs are designed for document objects– Many data objects are large
> 2QP2 produced 36GB of image data– HTTP download metaphor doesn’t scale
• Solution– Trialling both managed content and externally
referenced content at present– Investigating custom disseminators on server
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A is for Australian national developments
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A: Australian e-Research Infrastructure
• Term ≈ Cyberinfrastructure• National Collaborative Research Infrastructure
Strategy (A$555M, 5 yrs)– 15 research capabilities– and Platforms for Collaboration
• Platforms for Collaboration (A$75M, 4.5 yrs)– National Computation Infrastructure– Interoperation and Collaboration Infrastructure– Australian National Data Services
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A: Australian National Data Service
• Monash University is leading a project to establish ANDS
• ANU and CSIRO to be other members of collaborative partnership
• Tasks to be distributed more widely• Four platforms:
– Frameworks (policy)– Utilities– Repositories– Researcher Practice
• http://www.pfc.org.au/twiki/bin/view/Main/Data
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Q is for Questions!
• http://arrow.edu.au/
• http://dart.edu.au/
• http://archer.edu.au/
* Thanks to Dr Ashley Buckle and colleagues at Monash for the use of the protein crystallography slides and movies
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Federating Data
• The Australian Repository for Diffraction ImageS– http://www.tardis.edu.au/
• National activity to support communities of protein crystallographers
• Ideal place to hook into the eCrystals Federation– http://wiki.ecrystals.chem.soton.ac.uk/
