2
21p 21q 1.5 1 0.5 0 0.5 1 Log R Ratio 21p 21q 0 0.25 0.5 0.75 1 B Allele Freq 21p 21q SLOH GLOH 0 1 2 3 4 5 6 7 8 Copy number 21p 21q 0 0.2 0.4 0.6 0.8 1 Normal Fraction 21p 21q SLOH GLOH 4 3 2 1 0 1 2 3 4 Rel. CN Change 21p 21q 0 0.2 0.4 0.6 0.8 1 Normal Fraction 21p 21q SLOH GLOH 4 3 2 1 0 1 2 3 4 Rel. CN Change 21p 21q 0 0.2 0.4 0.6 0.8 1 Normal Fraction 21p 21q SLOH GLOH 4 3 2 1 0 1 2 3 4 Rel. CN Change 21p 21q 0 0.2 0.4 0.6 0.8 1 Normal Fraction 21p 21q 0 0.2 0.4 0.6 0.8 1 Normal Fraction Whole Genome Summary 21p 21q SLOH GLOH 4 3 2 1 0 1 2 3 4 Chromosome Rel. CN Change

Whole Genome Summary - GitHub Pagesbioinformatics-ca.github.io/.../cnas/plots/HCC1395.1.pdf · 2020. 7. 2. · 15 20 25 30 35 40 45 −1.5 −1 −0.5 0 0.5 1 Log R Ratio 15 20 25

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Page 1: Whole Genome Summary - GitHub Pagesbioinformatics-ca.github.io/.../cnas/plots/HCC1395.1.pdf · 2020. 7. 2. · 15 20 25 30 35 40 45 −1.5 −1 −0.5 0 0.5 1 Log R Ratio 15 20 25

21p 21q

−1.5

−1−0.5

0

0.51

Log

R Ra

tio

21p 21q

0

0.25

0.5

0.75

1

B Al

lele

Fre

q

21p 21qS−LOHG−LOH

012345678

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num

ber

21p 21q0

0.2

0.4

0.6

0.8

1

Norm

al F

ract

ion

21p 21qS−LOHG−LOH

−4−3−2−1

01234

Rel.

CN C

hang

e

21p 21q0

0.2

0.4

0.6

0.8

1

Norm

al F

ract

ion

21p 21qS−LOHG−LOH

−4−3−2−1

01234

Rel.

CN C

hang

e

21p 21q0

0.2

0.4

0.6

0.8

1

Norm

al F

ract

ion

21p 21qS−LOHG−LOH

−4−3−2−1

01234

Rel.

CN C

hang

e

21p 21q0

0.2

0.4

0.6

0.8

1

Norm

al F

ract

ion

21p 21q0

0.2

0.4

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0.8

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Norm

al F

ract

ion

Whole Genome Summary

21p 21qS−LOHG−LOH

−4−3−2−1

01234

Chromosome

Rel.

CN C

hang

e

Page 2: Whole Genome Summary - GitHub Pagesbioinformatics-ca.github.io/.../cnas/plots/HCC1395.1.pdf · 2020. 7. 2. · 15 20 25 30 35 40 45 −1.5 −1 −0.5 0 0.5 1 Log R Ratio 15 20 25

15 20 25 30 35 40 45

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15 20 25 30 35 40 45

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B Al

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Fre

q

15 20 25 30 35 40 45S−LOHG−LOH

012345678

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num

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Ran

k 1

15 20 25 30 35 40 450

0.2

0.4

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0.8

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Norm

al F

ract

ion

15 20 25 30 35 40 45S−LOHG−LOH

012345678

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Ran

k 2

15 20 25 30 35 40 450

0.2

0.4

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0.8

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Norm

al F

ract

ion

15 20 25 30 35 40 45S−LOHG−LOH

012345678

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Ran

k 3

15 20 25 30 35 40 450

0.2

0.4

0.6

0.8

1

Norm

al F

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ion

15 20 25 30 35 40 45S−LOHG−LOH

012345678

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k 4

15 20 25 30 35 40 450

0.2

0.4

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Norm

al F

ract

ion

15 20 25 30 35 40 450

0.2

0.4

0.6

0.8

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Norm

al F

ract

ion

Chromosome 21

15 20 25 30 35 40 45S−LOHG−LOH

012345678

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Position / Mb

Ran

k 5