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US GBIF Tools and Services August 12 th , 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

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Page 1: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

US GBIF Tools and Services

August 12th , 2010

Giri PalanisamyNBII, ORNL

Mike FrameNBII, USGS

Giri PalanisamyNBII, ORNL

Mike FrameNBII, USGS

Page 2: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

NBII-GBIF Services

• Hosts GBIF mirror for North America • Various data extraction services and visualizations• IPT prototype installation• Trainings/Workshops on DiGIR and IPT• Operates UDDI service• Supports several Cooperative agreements at

Museum’s & Herbaria in US

Page 3: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

GBIF Data Portal

GBIF Site: http://data.gbif.orgU.S. Mirror: http://us.mirror.gbif.org

World: - 201,275,468 occurrence records - 318 data providers

USA: - 83,607,198 records - 91 data providers

Page 4: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

Web services to query GBIF data

OGC web services:• Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon

• Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence

• Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density

• Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource

• Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider

• Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network

• More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs

• Web services to query US GBIF data (under development)

Page 5: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

GBIF Data Analysis And Extractions for NBII Partners

• Example GBIF Data Extractions:– Extract data for specific State(s), countries.– Extract data for list of species (plants, birds,

butterflies etc..)

Page 6: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

GBIF Data Analysis Extractions Cont..

Page 7: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

NBII Customized widgets for exploring GBIF data

GBIF Widget for Vermont Area

Page 8: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

• Based on NBII CH/Lucene/Solr index

• Species occurrences query– http://nbii-gbif.ornl.gov/us_solr/select?

indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=

Web Services to Query US GBIF Data

Page 9: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

Simple Web Services Client to get occurrence counts

http://mercury.ornl.gov/gbifUtility/

Page 10: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

• GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search.

• IPT prototype installation available in the NBII servers (for testing prupose)

• Other NBII-GBIF services

Page 11: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

• Species Level xml files for NBII Catalog search

Page 12: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

GBIF Species Records in NBII Catalog Search

Page 13: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

• NBII Search screen with GBIF records here……

Page 14: US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS

• Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level)

• Enable county level GBIF data visualization and extraction

• Extend the collaboration activities with new projects such as USVH, DataONE etc..

• Enable species mashups on the NBII metadata records

• Evaluate broader services for all GBIF data

• Current and future tasks