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Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated

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Page 1: Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated
Page 2: Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated
Page 3: Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated

Tools and tasksOBO-Edit. Edition of ontology

CVS. OBO Foundry repository in SourceForge

IMatch, MS-Access, scripted with Visual Basic for semi-automated tasks

Parsing MS-Excel templates for image data from contributors

Producing txt image-ontology annotation indices

Image versions (JPGs, thumbnails)

Producing html for imaging manual

Mequite. Edition of phylogenetic dataset

Beyond Compare. Synchronization with ftp image repository

Page 4: Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated

Main roadblocksMaintenance. Multiple data formats and repositories

nex

obo

mdb imd

Morphbank

xls

html

tiff jpg

mx?

txt

Page 5: Tools and tasks OBO-Edit. Edition of ontology CVS. OBO Foundry repository in SourceForge IMatch, MS-Access, scripted with Visual Basic for semi-automated

VisionSpider Ontology. Community of editors through International Society of Arachnology.

Link the worlds. Diversity and evolution – Model organisms – Genetics - Development

Reasoning on morphology. Correlations, associations, enrichments, …

Efficient systematics. Scale-up phylogenetic and taxonomic works.

Information technologies. To make our workEfficient, durablePublicly available in a variety of formatsUseful to a wide communityFor today needs And applications yet to be invented

Thanks!