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The platforms for species distribution modelling in China Huijie Qiao Institute of Zoology, CAS 06/15/2017

The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

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Page 1: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

The platforms for species distribution modelling in China

Huijie Qiao

Institute of Zoology, CAS

06/15/2017

Page 2: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

mMWeb An Online Platform for Employing Multiple

Ecological Niche Modeling Algorithms

Page 3: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

http://mmweb.animal.net.cn

Page 4: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

http://mmweb.animal.net.cn

Page 5: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

http://mmweb.animal.net.cn

Page 6: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P
Page 7: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P
Page 8: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Learning curve

Page 9: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P
Page 10: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

https://scienceasaverb.wordpress.com/2010/10/29/introduction-to-ecological-niche-modeling-environmental-niche-modeling-species-distribution-modeling-part-two-what-is-niche-modeling/

Page 11: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

https://scienceasaverb.wordpress.com/2010/10/29/introduction-to-ecological-niche-modeling-environmental-niche-modeling-species-distribution-modeling-part-two-what-is-niche-modeling/

Black box

Page 12: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

So…

• NicheA is a toy to play with the

data, rather than a ‘click-and-run’

software to ‘solve’ the problems.

Page 13: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

NicheA

Page 14: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Background cloud

Page 15: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Create an ellipsoid

Page 16: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Design barriers in G space

G space

E space

Page 17: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Export virtual to ENMs

Supported format: Maxent, Dismo, BIOMOD2, openModeller

Page 18: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Show ENM result

Page 19: The platforms for species distribution modelling in China · Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Unarte and Robert P

Functions in NicheA • Quantify niche overlap

• Principal Component Analysis

• Threshold calculator

• Variable normalization/standardization

• Calculate AUC value of partial-area

ROC approaches

• Calculate AIC/BIC value

• …