15
CHAPTER 2.5 Mitochondria and Autism Spectrum Disorders Robert K. Naviaux The Mitochondrial and Metabolic Disease Center, Departments of Medicine, Pediatrics, Pathology, University of California, San Diego School of Medicine, San Diego, CA, USA OUTLINE The Birth of Mitochondrial Medicine 179 What is Definite Mitochondrial Disease? 179 Epidemiology of Mitochondrial Disease 181 Definite Mitochondrial Disease is a Rare Cause of Autism Spectrum Disorders 181 Mitochondrial Disease and Autism Respond Differently to the Same Treatments 182 Nuclear Mitochondrial Genocartography and CNVs 184 Mitochondria and the Control of CNVs, DNA Instability, and Repair 185 Mitocellular Hormesis 186 Mitochondrial Functions in Metabolism 186 Mitochondrial Functions in Innate Immunity 186 Regression 187 Storm, Flare, and Fade Responses 188 The Possible Role of Purinergic Signaling in Autism Spectrum Disorders 189 Summary 190 Acknowledgments 190 THE BIRTH OF MITOCHONDRIAL MEDICINE The first clinical and biochemical description of mitochondrial disease was reported by Rolf Luft in 1962 (Luft et al., 1962). Only two patients with Luft disease have been described to date (DiMauro et al., 1976). Both were interesting examples of intellectually normal adults (both women) with a rare form of mito- chondrial over-function associated with high oxygen consumption rates, hypermetabolism, heat intoler- ance, resting tachycardia, hyperhidrosis, and death in middle age from respiratory muscle failure. Although mitochondria were first reported to contain their own DNA in 1963 by Margit and Sylvan Nass (Nass and Nass, 1963), it was another 25 years before the first DNA mutations were found that caused mito- chondrial disease. We date the dawn of the molecular age of mitochondrial medicine to 1988, when Doug Wallace and colleagues reported the first mitochon- drial DNA (mtDNA) mutations that cause disease (Wallace et al., 1988a, b). In the same year, Holt (1988) and Zeviani (1988) and their colleagues reported the first disease-associated deletions in mtDNA. Today, we know of more than 300 clinically, biochemically, or molecularly distinct forms of mito- chondrial disease (Naviaux, 2004). WHAT IS DEFINITE MITOCHONDRIAL DISEASE? Mitochondrial disorders are among the most diffi- cult diseases to diagnose in all of medicine. They consti- tute a large group of clinically heterogeneous disorders that have defied all efforts to find a universal biomarker 179 The Neuroscience of Autism Spectrum Disorders. http://dx.doi.org/10.1016/B978-0-12-391924-3.00012-0 Copyright Ó 2013 Elsevier Inc. All rights reserved.

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C H A P T E R

2.5

Mitochondria and Autism Spectrum DisordersRobert K. Naviaux

The Mitochondrial and Metabolic Disease Center, Departments of Medicine, Pediatrics, Pathology,

University of California, San Diego School of Medicine, San Diego, CA, USA

T

h

O U T L I N E

The Birth of Mitochondrial Medicine

179

What is Definite Mitochondrial Disease?

179

Epidemiology of Mitochondrial Disease

181

Definite Mitochondrial Disease is a Rare Cause ofAutism Spectrum Disorders

181

Mitochondrial Disease and Autism RespondDifferently to the Same Treatments

182

Nuclear Mitochondrial Genocartography andCNVs

184

Mitochondria and the Control of CNVs, DNAInstability, and Repair

185

17he Neuroscience of Autism Spectrum Disorders.

ttp://dx.doi.org/10.1016/B978-0-12-391924-3.00012-0

Mitocellular Hormesis

186

Mitochondrial Functions in Metabolism

186

Mitochondrial Functions in Innate Immunity

186

Regression

187

Storm, Flare, and Fade Responses

188

The Possible Role of Purinergic Signaling in AutismSpectrum Disorders

189

Summary

190

Acknowledgments

190

THE BIRTH OF MITOCHONDRIALMEDICINE

The first clinical and biochemical description ofmitochondrial disease was reported by Rolf Luft in1962 (Luft et al., 1962). Only two patients with Luftdisease have been described to date (DiMauro et al.,1976). Both were interesting examples of intellectuallynormal adults (both women) with a rare form of mito-chondrial over-function associated with high oxygenconsumption rates, hypermetabolism, heat intoler-ance, resting tachycardia, hyperhidrosis, and deathin middle age from respiratory muscle failure.Although mitochondria were first reported to containtheir own DNA in 1963 by Margit and Sylvan Nass(Nass and Nass, 1963), it was another 25 years beforethe first DNA mutations were found that caused mito-chondrial disease. We date the dawn of the molecular

9

age of mitochondrial medicine to 1988, when DougWallace and colleagues reported the first mitochon-drial DNA (mtDNA) mutations that cause disease(Wallace et al., 1988a, b). In the same year, Holt(1988) and Zeviani (1988) and their colleaguesreported the first disease-associated deletions inmtDNA. Today, we know of more than 300 clinically,biochemically, or molecularly distinct forms of mito-chondrial disease (Naviaux, 2004).

WHAT IS DEFINITE MITOCHONDRIALDISEASE?

Mitochondrial disorders are among the most diffi-cult diseases to diagnose in all of medicine. They consti-tute a large group of clinically heterogeneous disordersthat have defied all efforts to find a universal biomarker

Copyright � 2013 Elsevier Inc. All rights reserved.

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2.5. MITOCHONDRIA AND AUTISM SPECTRUM DISORDERS180

or universal symptom. In most cases, a child with mito-chondrial disease is completely healthy at birth, butdevelops symptoms in a step-wise fashion, weeks toyears later. In rare cases, symptoms may not appearuntil 70 years of age (Weiss and Saneto, 2010). Newsymptoms typically appear over time, so that at anyone time early in the disease, not all symptoms arepresent. This makes early diagnosis challenging orimpossible. Mitochondrial diseases share the one factthat they are fundamentally bioenergetic and metabolicdisorders that result from defects (under-function) inoxidative phosphorylation – the ability to make ATPin mitochondria from electrons, hydrogen, and oxygen.This clinical heterogeneity has led to the widelyquoted axiom that mitochondrial disease can produceany symptom, in any organ, at any age (Munnichet al., 1996).

Mitochondrial under-function and over-functiondisorders are clinically distinct. Historically, the fieldof mitochondrial medicine has focused on the disordersof under-function. The disorders of over-function will beaddressed later in this chapter. Mitochondrial under-function diseases can be divided into primary andsecondary forms. Primary mitochondrial diseases aregenetic disorders caused by mutations in either nuclearor mitochondrial DNA that affect the proteins of themitochondrial respiratory chain. For this reason, they

TABLE 2.5.1 Modified Walker Criteria for the Diagnosis of Mitoch

Mitochondrial disease diagnosis

Definite

Probable

Possible

Major criteria

Clinical: Classic multisystem mitochondrial phenotype withprogressive clinical course, or positive family history

Histology: � 2% Ragged-red fibers (RRF)

Enzymology: � 2% COX-negative fibers if < 50 yrs old; or � 5%COX-negative fibers if � 50 yrs old; or < 20% any respiratorychain (RC) enzyme or polarographic activity; or < 30% in cellculture, or 20e30% in � 2 different tissues

Functional: Fibroblast ATP synthesis � 3 SD below the mean

Molecular: Pathogenic mtDNA or nuclear DNA abnormality

* Tables summarized from Bernier et al., 2002.

2. ETIOLOGY OF AUTISM

are sometimes call respiratory chain (RC) disorders.Secondary mitochondrial diseases are ecogenetic disor-ders that result from a combination of environmentaland genetic factors. The distinction between primaryand secondary mitochondrial disorders is clinicallyimportant because it carries implications for geneticcounseling. Primary disorders are monogenic and carryrecurrence risks associated with known Mendelian andmaternal patterns of genetic transmission. Secondarydisorders are rarely monogenic and require exposureto one or more environmental factors such as a drug,toxicant, or viral infection. Counseling for recurrencerisks of secondary mitochondrial and other ecogeneticdisorders is empiric.

When a single biomarker, sign, or symptom isunable to establish a disease diagnosis in a determin-istic manner, medicine has historically developedprobabilistic methods for diagnosis. The modifiedWalker criteria (Bernier et al., 2002) have been widelyadopted to group or stratify patients according to thelikelihood of genetic forms of mitochondrial disease.Using these criteria, patients are given a diagnosis ofdefinite, probable, or possible mitochondrial disease(Table 2.5.1). If a causal DNA mutation is not found,a muscle biopsy is typically required to confirm a defi-nite diagnosis of mitochondrial disease. The criteriafor ‘definite’ mitochondrial disease have been used

ondrial Disease*

Diagnostic requirements

� 2 major, or 1 major þ 2 minor criteria

1 major þ 1 minor, or � 3 minor criteria

1 major, or 1 minor clinical þ 1 other minor criterion

Minor criteria

Clinical: Incomplete mitochondrial phenotype

Histology: 1e2% RRF if 30e50 years old, or any RRF if< 30 years, orwidespread ultrastructural abnormalities

Enzymology: Antibody-based demonstration of defective RCsubunit expression, or 20e30% RC activity in a tissue, or 30e40% RCactivity in a cell line, or 30e40% RC activity in � 2 tissues

Functional: Fibroblast ATP synthesis 2e3 SD below the mean, orunable to grow in galactose

Molecular: mtDNA or nuclear DNA abnormality of probablepathogenicity

Metabolic: � 1 Abnormal metabolic indicator of RC function(eg., lactate, 31P-MRS)

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DEFINITE MITOCHONDRIAL DISEASE IS A RARE CAUSE OF AUTISM SPECTRUM DISORDERS 181

to determine the epidemiology of mitochondrialdisease.

EPIDEMIOLOGY OF MITOCHONDRIALDISEASE

The epidemiology of mitochondrial disease hasevolved rapidly over the past 15 years. The first estimatesof its prevalence were as low as 1:33,000 (Applegarthet al., 2000). These lower estimates were hampered bythe absence of consistent standards for diagnosis andearly stages of the rapidly growing awareness of the clin-ical heterogeneity of mitochondrial diseases. Most chil-dren with mitochondrial disease before the year 2000died without a proper diagnosis. The best figures nowavailable are that 1 in 2,000 children born each year inthe US will develop definite mitochondrial disease intheir lifetimes. About half of these children (1:4,000)will develop symptoms in the first 10 years of life(Naviaux, 2004). The other half (1:4,000) will remainhealthy, without any symptoms until after age 10. Manyadult mitochondrial disorders do not manifest until 20–50 years of age, and in rare cases not until the 70s (Weissand Saneto, 2010). About half of adult mitochondrialdisease is caused by mtDNA mutations and half bynuclear DNAmutations. A recent study ofmitochondrialdisease among adults in the UK found about 1 in 4,000adults (25.7 per 100,000) had or were at risk formtDNA-based disease (Schaefer et al., 2008). Thegrowing awareness that mutations in nuclear DNA canlead to many different adult mitochondrial disorderswith many different symptoms (Cohen and Naviaux,2010; Saneto and Naviaux, 2010) means that the preva-lence figures for adult mitochondrial disorders maycontinue to rise over the next few years.

About 15% of pediatric mitochondrial disease iscaused by mtDNA mutations (Rotig et al., 2004) and85% is caused by nuclear DNA mutations that areinherited in a Mendelian fashion. Most of these areinherited as autosomal recessive disorders, but X-linkedand dominant forms are also well known. Over 200point mutations and 400 deletion break points havebeen described in mitochondrial DNA that lead todisease (DiMauro et al., 2006) and over 60 nuclear geneshave been identified with well over 500 disease-causingmutations (Falk, 2010; Haas et al., 2008; Wong, 2010).Excellent diagnostic algorithms have recently been pub-lished to assist physicians in choosing which genes toselect for DNA testing to best explain a particular clin-ical presentation (Wong, 2010; Wong et al., 2010).When an mtDNA mutation is suspected, full mitochon-drial DNA sequencing by NextGen methods is nowavailable and recommended (Kauffman et al., 2012).When a Mendelian pattern of transmission is identified

2. ETIOLOGY OF AUTISM

in a pedigree and the probability of finding one of themore common nuclear gene causes is low, exomecapture and NextGen sequencing of 362 to 524 nuclearmitochondrial genes is available (Shen et al., 2011; Vastaet al., 2009).

DEFINITE MITOCHONDRIAL DISEASE ISA RARE CAUSE OF AUTISM SPECTRUM

DISORDERS

The first evidence of a mitochondrial DNA mutationthat could cause autism spectrum disorders (ASD) waspublished in 2000 (Graf et al., 2000). In this report, theauthors found a heteroplasmic point mutation in themitochondrial tRNA for lysine (G8362A) that wasthe cause of Leigh syndrome in a 6-year-old girl witha history of normal development in the first year of life,with the onset of ataxia and myoclonus at 15 months ofage. She had classic, symmetric T2 signal abnormalitiesin the basal ganglia and brain stem, characteristic ofLeigh syndrome. Her speech and language were normalexcept for dysarthria and moderate intellectual impair-ment. The mtDNAmutation was associated with a respi-ratory chain defect in muscle complex IV. Her youngerbrother was diagnosed with ASD after developmentalregression at 1.5–2 years of age. By 3.5 years of age, hehad no functional speech or language, was hyperactive,and displayed bouts of self-injurious behavior. Hecarried the same tRNA lysinemutation as his older sister,but at lower level of heteroplasmy (61% vs. 86%). Insharp contrast to his older sister with Leigh syndrome,the muscle biopsy of the brother with autism showeda paradoxical hyperactivity in complex I that was 250%of normal (200.6 vs. 81; SD of 29.4; normalized for citratesynthase activity) (Graf et al., 2000). Recently, a group ofchildren with hyperactivity of complex IV and autismhas been described (Frye and Naviaux, 2011). Somepatients with complex IV hyperactivity and autismhave been found to have a mutation in the mitochondrialcalcium-regulated aspartate-glutamate carrier (AGC1)(Palmieri et al., 2010).

In March 2008, the connection between mitochondriaand autism was catapulted into the national spotlightwhen news media picked up the story of Hannah Poling(Stobbe, 2008; Wallis, 2008), a little girl who had mito-chondrial disease and developed an ASD within weeksof receiving several immunizations at 1.5 years of agein 2000 (Poling et al., 2006). In June 2008, the US NationalInstitute of Mental Health (NIMH), National Institute ofChild Health and Human Development (NICHD),Centers for Disease Control and Prevention (CDC), andFood and Drug Administration (FDA) rapidly organizeda public, special topic symposium on MitochondrialDisease and Autism in Indianapolis, IN, in conjunction

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2.5. MITOCHONDRIA AND AUTISM SPECTRUM DISORDERS182

with the annual meeting of the United MitochondrialDisease Foundation (UMDF) (Gorski, 2008). This case isunusual for definite forms of mitochondrial diseases,which typically do not show regression after routineimmunizations (Verity et al., 2010; 2011).

Now, in 2012, the connection between mitochondrialdysfunction and ASD (Haas, 2010; Rossignol and Frye,2011) remains one of the freshest new leads in nearly70 years of autism research since autism was first iden-tified as a childhood disease by Leo Kanner in 1943(Kanner, 1943). However, as evidenced in an epidemio-logical study in mainland Portugal and the Azores,only 5% of children with ASD have definite forms ofmitochondrial disease (Oliveira et al., 2007), and thisestimate would benefit from replication in independentepidemiological cohorts. The classic forms of primarymitochondrial disease have a very different clinical char-acter to that found in children with ASD. Mitochondrialdisease patients often have devastating, multi-organsystem disorders with mortalities as high as 10–50%per year after the onset of the first symptoms (Cohenand Naviaux, 2010; Naviaux, 1997; Rahman et al.,1996). This mortality far exceeds the rate of 0.2% deathsper year (26 of 342 ASD patients studied over 36 years)observed in ASD (Mouridsen et al., 2008). In addition,children with mitochondrial disease are often found tohave decreased sensitivity to sound, touch, and light,decreased muscle strength, decreased activity, withnormal social engagement. Hyperactivity and repetitivemovements are rare in definite mitochondrial disease.These symptoms are in sharp contrast to those foundin children with ASD.

The weight of the evidence collected since 2000now points to a more subtle connection between mito-chondrial function and ASD. Simple mitochondrial

Not Classical Mitochondrial Disease (MD)

≥ 198:2

FIGURE 2.5.1 The majority of children withautism do not have classic forms of mitochondrialdisease (MD). Epidemiologic studies show that fewerthan 5% of children with autism spectrum disordershave classical mitochondrial disease. Other forms ofmitochondrial dysfunction, such as a persistent dangerresponse, or segmental over-function of certain mito-chondrial functions in innate immunity, may be morecommon and impair cellular communication by effectson metabolism. These non-oxidative-phosphorylationfunctions of mitochondria are not routinely measuredin the evaluation of children for classic forms ofmitochondrial disease.

2. ETIOLOGY OF AUTISM

under-function does not cause either narrowly definedautism or ASD, with rare exceptions (Shoffner et al.,2010; Weissman et al., 2008). Several cases of mitochon-drial respiratory chain over-function and ASD havenow been described (Frye and Naviaux, 2011; Grafet al., 2000). This is likely to be an under-reportedphenomenon, since most specialists in mitochondrialmedicine dismiss respiratory chain enzyme hyperac-tivity (� 165% of controls) as incidental, or as compensa-tion for another, often unmeasured, defect. In eithercase, respiratory chain over-function is not a cause ofprimary mitochondrial disease. The relative proportionsand overlaps between children with autism and mito-chondrial disease are summarized in Figure 2.5.1.

MITOCHONDRIAL DISEASE ANDAUTISM RESPOND DIFFERENTLY TO

THE SAME TREATMENTS

If two diseases have the same cause, they shouldrespond similarly to the same treatments. The factthat this is not the case with definite mitochondrialdisease and ASD is further evidence that these disor-ders should not be lumped together. Table 2.5.2 listsfour cases that distinguish mitochondrial disease onthe one hand and ASD on the other. Valproic acid(depakote, divalproex) is an 8-carbon branched-chainfatty acid that is widely used to treat seizures and otherdisorders in ASD (Hollander et al., 2010), but is knownto produce mitochondrial toxicity in the large majorityof patients with mitochondrial disease (Saneto et al.,2010). The only case of mitochondrial disease in whichvalproic acid therapy is usually well tolerated andeffective is in MERRF (myoclonus, epilepsy, with

Autism Spectrum Disorders

1:110

Classical Autism

Possible Mitochondrial Disease

Probable Mitochondrial Disease

Definite Mitochondrial Disease

1:4000 Children

1:2000

1:1000

1–5% of ASD have MD; 10–20% of MD have an ASD endophenotype

00

1:250

95–99% of ASD do not have MD

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TABLE 2.5.2 Definite Mitochondrial Disease and Autism Respond Differently to the Same Treatments

Treatment or feature Definite mitochondrial disease Autism spectrum disorders Reference

Valproate Deterioration(except MERRF)

71% improved Hollander et al., 2010

Fever Deterioration(fade response)

83% improved Curran et al., 2007

Hyperbaric O2 Deterioration 30e80% improved,or no net benefit

Jepson et al., 2011;Rossignol et al., 2009

Recovery (spontaneous ortherapy-associated)

Very rare (LHON, reversible COXtRNA-Glu)

3e25% Helt et al., 2008

LHON ¼ Leber’s hereditary optic neuropathy.

MITOCHONDRIAL DISEASE AND AUTISM RESPOND DIFFERENTLY TO THE SAME TREATMENTS 183

ragged-red fibers) when given with L-carnitine supple-mentation. This is a form of mitochondrial disease thatis characterized by massive mitochondrial proliferationand may have some symptoms that result from anelement of metabolic hyperfunction, in addition to theknown oxidative phosphorylation deficiency.

The response to fever is also different in mitochon-drial disease patients andmost patients with ASD. Infec-tions and fever caused over 70% of theneurodegenerative events observed in children withmitochondrial disease (Edmonds et al., 2002). However,in a prospective study of 30 children with autism and30 controls, Andy Zimmerman and his colleagues atthe Kennedy Krieger Institute found that 83% (25 of30) of the children with ASD improved in at least onearea related to hyperactivity, stereotypy, or speech,although lethargy scores were worse (Curran et al.,2007) (Table 2.5.2). The curious ‘awakening’ of ASDduring fever is short-lived, as the children returned totheir previous state with the resolution of the infectionand fever. Infection and fever are also known to producetransient improvements in some patients with schizo-phrenia. The history of the role of fever, cytokines, andinnate immunity in the pathogenesis of disease hasbeen reviewed (Patterson, 2009). How can fever beinvolved both in the cause of autism and in its transientimprovement? We will return to this question later inthis chapter in the sections on innate immunity andmitochondrial hormesis.

Hyperbaric oxygen treatment was shown to haveneutral (Jepson et al., 2011) or beneficial (Rossignolet al., 2009) effects on children with ASD. This would bein sharp contrast to the experience of definite mitochon-drial disease patients who can suffer catastrophic neuro-degeneration and sometimes death associated withhyperbaric oxygen therapy (Table 2.5.2). The questionof hyperbaric oxygen therapy for mitochondrial diseasewas addressed by the scientific advisory board of theUnited Mitochondrial Disease Foundation in 2007(UMDF, 2007). Classic mitochondrial disease is caused

2. ETIOLOGY OF AUTISM

by an inherited inability of the cell to use oxygen. Theforcible delivery of increased levels of oxygen in classicforms of mitochondrial disease does not improve mito-chondrial function. Instead, it results in a deleteriousincrease in damaging reactive oxygen species (ROS),which can further damage mitochondrial membranes,enzymes, and DNA and lead to neurodegeneration.This difference in the clinical response to hyperbaricoxygen further differentiates the major mechanisms ofpathogenesis that underlie ASD and mitochondrialdisease and underscores the risk of hyperbaric oxygenin ASD unless mitochondrial disease is ruled out.

Recovery or partial recovery has been reported in3–25% of children with ASD (Helt et al., 2008) (Table2.5.2). In most cases this has occurred in associationwith intensive behavioral and/or biomedical therapy.Recoveries in mitochondrial disease are virtuallyunheard of. There are two rare exceptions that in totalconstitute less than 1% of all mitochondrial disease.These are spontaneous or treatment-associated recoveryof vision in certain forms of Leber’s hereditary opticneuropathy (LHON) (Sadun et al., 2011) and sponta-neous recovery in a rare form of cytochrome oxidasedeficiency (Mimaki et al., 2010). In all other cases ofmitochondrial disease, the natural history typicallyinvolves step-wise or gradual deterioration over monthsto years after the onset of symptoms. In many cases, thisleads to early death. Multiple organ systems eventuallybecome involved.

Single-gene defects cause the classic forms of mito-chondrial disease. In contrast, most ASD is thought tobe multifactorial, with genes of major and minor effectinteracting with environmental and additional factors(see other chapters in this section). Where genes meetthe environment is metabolism, and mitochondria arethe hub of the wheel of metabolism. The remainder ofthis chapter focuses on the metabolic functions of mito-chondria that are involved in innate immunity. Cellulardefense is one of the most ancient functions of mitochon-dria. By considering the responses of genes and

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2.5. MITOCHONDRIA AND AUTISM SPECTRUM DISORDERS184

metabolic processes to danger signals in the environ-ment, we can get a little closer to understanding thecomplex link between mitochondria and ASD.

NUCLEAR MITOCHONDRIALGENOCARTOGRAPHY AND CNVS

The mitochondrial proteome consists of about 1,500proteins (Pagliarini et al., 2008) encoded by over 1,000nuclear genes (Figure 2.5.2) and 13 proteins made bymtDNA. Every one of the 1014 cells of the body containsdifferent mitochondria, that are specialized to meet themetabolic demands of that cell. Therefore, there isa different mitochondrial network, with a different pro-teome, with different post-translational modificationsfor every different cell in the body. This remarkablefeat is accomplished by regulating both nuclear andmitochondrial gene expression in tissue-specific ways(Johnson et al., 2007), and by making dozens of post-translational modifications in proteins that fine-tunemetabolism according to the time of day, availability ofnutrients, toxin exposure, microbial infection, and even

1 2 3 4 2 3 4

9 10 11 12

17 18 19 20

FIGURE 2.5.2 Mitochondrial genocartography. Each of the 23 human1–4 over chromosome 1). Bar #1 in blue illustrates the number and positionillustrates the conventional G-banding pattern of each chromosome. Barsome. Bar #4 illustrates the density of mitochondrial genes on the chromcopy number variations (CNVs) occur, the mitochondrial genes in the affeof over 500 bioenergetic and metabolic functions of mitochondria in the

2. ETIOLOGY OF AUTISM

the season of the year (Staples and Brown, 2008; Zhaoet al., 2011). The chromosomal location of each of these1,500 proteins can be mapped. On average, each of our23 chromosomes contains about 20–70 mitochondrialgenes (Figure 2.5.2).

Recent studies have shown that about 4% of childrenwith autism have rare DNA copy number variations(CNVs) that might contribute to disease, compared tojust 2% of typically developing, age-matched controls(e.g., Pinto et al., 2010; see also Chapters 2.1 and 2.2).Most of these CNVs were duplications, not deletions,although there is good evidence that deletions aremore likely associated with ASD and other neurodeve-lopmental disorders. Interestingly, the same CNVsfound to be associated with ASD have also been foundto be enriched in patients with schizophrenia (e.g.,Guilmatre et al., 2009; see also Chapters 2.1 and 2.2), sug-gesting that disruption of brain development by CNVcan contribute to amyriad of neurodevelopmental disor-ders, likely in concert with other genetic or environ-mental factors (see Chapter 2.1). Analysis of the genesaffected by recurrent CNVs and single-gene defects inASD highlights the complex etiology of ASD with

5 6 7 8

13 14 15

21 22 X

16

chromosomes illustrated is associated with four vertical bars (labeledof nuclear mitochondrial genes. Over 1,000 of these are known. Bar #2#3 illustrates the density of non-mitochondrial genes on the chromo-osome. Each chromosome contains 20–70 mitochondrial genes. Whencted areas are also varied, leading to gene dose effects that can alter anycell.

SPECTRUM DISORDERS

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FIGURE 2.5.3 The language of the cell is metabolism. Cells communicate with neighboring and distant cells in the body by exchanging smallmolecule metabolites like nucleotides, organic acids, amino acids, and lipids. This ancient language of the cell is still largely untranslated. Newmethods in mass spectrometry are revealing how cells communicate messages about stress, danger, health, and disease. The cell above is a livercell adapting to nutrient excess in diabetes. Mitochondria are illustrated as the two blue boxes in the center, receiving pyruvate on the left andfatty acids on the right. Cells in affected tissues of patients with autism speak a different message but use the same vocabulary of chemicalwords. The most common developmental and chronic diseases in medicine can be understood as disorders of cellular communication.

MITOCHONDRIA AND THE CONTROL OF CNVs, DNA INSTABILITY, AND REPAIR 185

multiple organelles and systems implicated (Chapter2.1). The interpretation of duplication CNVs is compli-cated, because typically developing children can havethe same CNVs, consistent with reduced impact and/or penetrance of duplications (Pinto et al., 2010).

MITOCHONDRIA AND THE CONTROL OFCNVs, DNA INSTABILITY, AND REPAIR

Gene duplication and deletion events are regulated bycross-over events that lead to mitotic recombination(Matos et al., 2011). It is known that changes inmitochon-drial DNA copy number have dramatic effects on nuclearDNA repair and genomic instability (Singh et al., 2005).What are some of the factors that control mtDNA copy

2. ETIOLOGY OF AUTISM

number in cells? TLR4 signaling after LPS signaling asso-ciated with bacterial infection leads to mtDNA damageand depletion (Suliman et al., 2005). Significant amountsof free fatty acids can also act as endogenous ligands ofthe TLR4 receptor during periods of metabolic mismatchassociated with disorders like diabetes (Schaeffler et al.,2009). Interferon released during infections activates thecellular RNAse L that can traffic to mitochondria anddestroy mitochondrial RNA (Chandrasekaran et al.,2004). Even certain viruses, like herpes simplex virus,encode a special DNAse (UL12.5) that travels to mito-chondria and produces mitochondrial DNA damageand depletion (Corcoran et al., 2009). It turns out thatmany infectious agents target mitochondria in an effortto downregulate oxygen consumption, which inhibitsDNA synthesis and replication.

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2.5. MITOCHONDRIA AND AUTISM SPECTRUM DISORDERS186

A spectrum of environmental neurotoxicants such asbisphenol A (BPA), polychlorinated biphenyls (PCBs)(Jolous-Jamshidi et al., 2010), and certain polybrominateddiphenyl ethers (PBDEs) (Ashwood et al., 2009), known tocause autism-like behaviors inmouse and ratmodels, alsocan regulatemitochondrial functioneitherdirectlyor indi-rectly via alterations in cellular calciumhandling (Coburnet al., 2008). Although it has not yet been experimentallyverified, it seems plausible that infection, environmentalneurotoxicants, and/ormetabolic stress can each producechanges in mitochondrial function that might alter thesomatic control ofmitotic recombination andCNV forma-tion rates during embryogenesis and early childhooddevelopment. Acutely this can produce a transientincrease in somatic CNV formation.

MITOCELLULAR HORMESIS

Chronically, mitochondria are known to help the celladapt to past metabolic stresses by producing long-term changes in cellular reactivity in a process calledmitochondrial hormesis (Ristow and Zarse, 2010).When both mitochondrial and cellular mechanismsadapt, the result is mitocellular hormesis. Mitocellularhormesis in response to xenobiotics produces long-termup-regulation of cellular oxidation, inactivation, andexcretion pathways like cytochrome P450, sulfation,and glucuronidation (Xu et al., 2005). Mitocellular horm-esis in response to infectious or inflammatory agents acti-vates innate immune pathways that increase reactiveoxygen species (ROS) production, activate cell signalingand cytokine responses, alter folate, B12, and othervitamin metabolism, and change the gene expressionand epigenetic programs of the cell. The response tocellular stress is invariably biphasic. First there is an acuteinhibition, followed by long-term adaptation, much likethe metabolic memory response associated with exercise(Ji et al., 2006).When the triggering stimulus is inhibitory,or surpasses the mitochondrial capacity to process theresulting metabolites, then mitochondrial proliferationand hyperfunction results (Sano and Fukuda, 2008). Ifproliferation and mitochondrial hyperfunction occur inneurons or microglia in the brain, then persistent low-level excitotoxicity and neuroinflammation can result.What is the final common denominator that maintainsthis cycle of metabolic innate immune activation, excito-toxicity, and inflammation?

MITOCHONDRIAL FUNCTIONSIN METABOLISM

Mitochondria are located at the hub of the wheel ofmetabolism. They perform over 500 different functions

2. ETIOLOGY OF AUTISM

in the cell. Respiratory chain proteins constitute about10–20% of the mitochondrial proteome (Pagliariniet al., 2008). The other 80–90% of mitochondrialproteins play roles in hundreds of other pathways,including in innate immunity, cellular defense, aminoacid transport, calcium metabolism, iron metabolism,copper metabolism, reductive and oxidative stressmetabolism, hydrogen sulfide and nitric oxide metabo-lism, fuel sensing, translation, protein folding andassembly, autophagy, microtubule association, folatemetabolism, porphyrin metabolism, steroid metabo-lism, glycolate metabolism, and DNA repair. None ofthese non-oxidative phosphorylation functions isroutinely measured when a child is evaluated formitochondrial disease. Therefore, a large part of mito-chondrial function has never been systematicallymeasured in children with ASD because it relates tofunctions outside the respiratory chain, and producessymptoms that are not characteristic of definite mito-chondrial disease.

It can be stated simply that metabolism is thelanguage of the cell. Figure 2.5.2 illustrates some ofthe metabolic pathways that characterize a liver cell.The methods of mass spectrometry and metabolomicshave allowed investigators to ‘eavesdrop’ on the collec-tive conversation of cells in ASD. These early studieshave identified abnormalities in glutathione (Jameset al., 2004), taurine, glutamate, hippurate (Yap et al.,2010), and polyunsaturated phospholipid metabolism(Pastural et al., 2009). The language of metabolism isspoken using small molecule metabolites as the words.This is a universal language of life on Earth, with manydialects that reflect the specialization of organismsadapting to their environment. Despite its universalusage, this language of metabolism is still largelyuntranslated. Future studies using the tools of massspectrometry will help expand our lexicon of metabo-lites and their meanings, and help us to interpret theconversation of metabolism in children with ASD.

MITOCHONDRIAL FUNCTIONSIN INNATE IMMUNITY

One of the most ancient functions of mitochondria isin cell defense. I have called this the ‘secret life of mito-chondria’ because it is largely separate from oxidativephosphorylation. When a cell is attacked by a virus,a cascade of events is initiated that is designed to protectthe cell from injury, limit viral replication, and warnneighboring cells of the intrusion. Healthy cells canincrease or decrease their response to a given infectionor inflammatory stimulus by a process of priming.Primed cells have adopted a more defensive set-point,

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REGRESSION 187

sacrificing certain differentiated cell functions for theability to respond rapidly to an attack. When thishappens in the brain, excitotoxicity and inflammationcan result. When it happens in gut-associated lymphoidtissue (GALT), then abnormally aggressive responsesto the normal gut microbiome can result. If a cell isinjured or broken in the attack, then a large numberof molecules are released into the extracellular spaceas ‘danger’ signals. Many of these are present in highconcentrations within mitochondria. These dangersignals are collectively called damage-associated molec-ular patterns (DAMPS). ATP is a DAMP (Zhang et al.,2010). Inside the cell, ATP concentrations range from1–5mM depending on the cell type. Each cell maintainsa pericellular halo of ATP in the 1–5 mM range thatinteracts with a family of ancient cell-surface proteinscalled purinergic receptors. The possible role of puri-nergic signaling in ASD will be discussed in a latersection.

Another reason that a number of mitochondrial mole-cules act as DAMPs is the evolutionary origin ofmitochondria as the ancestors of ancient, free-livinggram-negative bacteria (Cavalier-Smith, 2006).Mitochon-drial DNA itself contains unmethylated CpG dinucleo-tides that resemble bacterial DNA and activateTLR9. Proteins synthesized in mitochondria start witha bacteria-like formyl-methionine.N-formyl-methionine-containing peptides from mitochondria bind the formylpeptide receptor (FPR1, and FPRL1) and activate innateimmunity (West et al., 2011). The regulation of intracel-lular calcium release from the endoplasmic reticulum tomitochondria through the IP3 receptor and ryanodinereceptor channel is a crucial point of regulation of themetabolic response to infection and stress (Zecchiniet al., 2007). Recent studieshave suggested that abnormal-ities in mitochondrial calcium handling (Gellerich et al.,2010) may be a common denominator in ASD (Napolioniet al., 2011).

REGRESSION

Regression is common in mitochondrial disease inresponse to infection. The first report to quantify therisk of neurodegeneration with infection in definitemitochondrial disease was published in 2002 (Edmondset al., 2002). The authors of this paper found that 60% ofchildren with mitochondrial disease suffered neurode-generative events (regressions). A total of 72% of theregression events were associated with infections thatoccurred within two weeks before the onset of regres-sion. None of the regression events in children withmitochondrial disease were associated with childhoodimmunizations. A total of 28% of the regressions

2. ETIOLOGY OF AUTISM

occurred spontaneously, with no identifiable trigger.Regressions occurred at any age, and were not confinedto the first two to three years of life. The form of regres-sion was one of a ‘fade’ response that occurred 2–10 daysafter the peak fever associated with the illness. Mostoften the neurodegeneration occurred during an other-wise normal recovery period after a common childhoodinfectious illness. Over a period of a few days, the childbecame obtunded or encephalopathic, or experienceda stroke-like episode, new-onset seizures, or lost theability to walk or talk, lost vision, developed swallowingproblems or gastrointestinal dysmotility, or lost otherdevelopmental milestones. In most cases, the child wasable to make a slow and sometimes complete recoveryover several months, but often there were residual defi-cits. In less common cases, there was a slow progressionto encephalopathy, coma, and death over two to threemonths.

Regression is less common in ASD and more subjectto large differences in estimates of its prevalence basedon small differences in the definition of regression.Regression occurred in 15% of 333 children 2–5 yearsof age with ASD reported by Hansen et al. (2008). Thecriteria for regression were loss of both language andsocial skills. The loss of social skills was found to bea more sensitive indicator for regression and 26% of chil-dren had either language loss or loss of social skills. 59%percent of the 333 children in this CHARGE study hadno history of regression. The severity of the neurologicalregressions in ASD was much less, and their characterwas different to those in mitochondrial disease. Strokesand permanent weakness are rare in ASD, and no deathswere reported.

The role of mitochondrial dysfunction as a risk factorfor regression in a subgroup of children with ASD wasrecently highlighted in a paper by Shoffner et al. (2010).A group of 28 children with both mitochondrial respira-tory chain disease and ASD were selected for retrospec-tive analysis. The authors found that 61% had a history ofa neurodegenerative episode that eventually grew intothe features of ASD. 39% of children developed ASDgradually, without a history of regression. When regres-sion occurred, 71%happenedwithin twoweeks of a feverof over 101�F. These proportions were similar to thoseoriginally reported by Edmonds et al. in childrenwithoutautism (Edmonds et al., 2002). In four children (14% ofthe 28), the fever occurred after routine vaccination. Inthe remaining eight children, fever came with a routineinfection or was a fever of unknown origin. This studyemphasizes the fragile nature of children with mitochon-drial disease. The observation that four childrenregressed after immunization is rare in mitochondrialdisease in general. Most children with classic forms ofmitochondrial disease tolerate immunization well.

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TABLE 2.5.3 Careful Attention to the Timing and Symptoms of an Adverse Reaction After Infection or ImmunizationProvides Insights into the Underlying Cause

Character of the adverse reaction

STORM FLARE FADE

Timing 2e12 hrs, or 2e6 days after exposure Peaks at 48e72 hrs e coincides withpeak symptoms of infection

Peaks at 2e10 days after peaksymptoms of infection

Symptoms Fever, HA, abd/low back pain, T-cellactivation, widespread apoptosis,TNFa/IFNg synergy, þ/� ADCC,complement C5a, shock, histamine,DIC, hemorrhage

Stereotyped ‘sickness behavior’; orhigh fever � 10�2�F, hyper-irritability,inconsolability, intermittent high-pitched screaming, delirium,opisthotonous, GI hypermotility withdiarrhea

No fever or low-grade fever, ataxia,gastroparesis, aphasia or hypophasia,stroke-like episodes, change inmuscle tone (hypo- or transienthypertonia 2�to CNS hypofunction)

Sequelae Death in 4e14 days; or slow recoveryover 2e6 months, sometimes withpermanent disability

Self-limited course, normalvaccination conversion rate; or loss ofmilestones, with appearance ofautism spectrum behaviors over 3e6months. May improve transientlywith fever later.

Self-limited neurodegeneration, poorvaccination conversion rate, slowrecovery; or progressivecomplications and multi-organsystem dysfunction, leading to deathin 1e4 months

Mechanism Anamnestic response Exaggerated innate immuneresponse, possible mitochondrialhyperfunction

Mitochondrial failure

Examples Jesse Gelsinger (Wilson, 2009);Dengue shock(Pang et al., 2007)

Hannah Poling (Poling et al., 2006) Reye syndrome (Partin, 1994)Definite mitochondrial disease afterinfection (Edmonds et al., 2002)

Abd ¼ abdominal; CNS ¼ central nervous system; GI ¼ gastrointestinal; IFN ¼ interferon; TNF ¼ tumor necrosis factor.

2.5. MITOCHONDRIA AND AUTISM SPECTRUM DISORDERS188

STORM, FLARE, AND FADE RESPONSES

Careful attention to the timing and character of anadverse reaction to infection or immunization canprovide crucial insight into the cellular mechanismsinvolved. Table 2.5.3 illustrates the three classes ofadverse response. The cytokine ‘storm’ responserequires prior immunization with the triggering antigen.Perhaps the most famous example is the tragic case ofJesse Gelsinger who developed a cytokine storm withinhours of receiving gene therapy with an adenovirusvector and died two days later (Wilson, 2009). Anotherwidely recognized example of a perfect storm of cyto-kines occurs with Dengue shock syndrome (Panget al., 2007), in which a second exposure to Dengue virusproduces a severe memory, or anamnestic, response thatcan lead to shock and death.

When children with the common forms of mitochon-drial disease suffer a regression, it is most often a ‘fade’response (Table 2.5.3). The fade response is typicallydelayed for 2–10 days after a fever resolves (Edmondset al., 2002), similar to the time course found in Reyesyndrome in the 1980s (Partin, 1994). In the case ofReye syndrome, the early metabolic profile of highlyelevated short chain fatty acids that are normally fullymetabolized in mitochondria is evidence that mitochon-dria are catastrophically downregulated early in the

2. ETIOLOGY OF AUTISM

disease process. Recovery from Reye syndrome wasassociated with the removal of short chain fatty acidslike propionate, isobutyrate, and isovalerate (Trauneret al., 1977) indicating that mitochondrial function wasrestored. Parents of children with mitochondrial diseasewill typically report that their child was getting betterfrom their cold or flu, when, suddenly, their conscious-ness fades. The child can become difficult to fullyawaken, or will stop walking, stop talking, stiffen orlose muscle tone, or have a seizure, or a stroke-likeepisode. The fade response involves an energy failure,and can lead to a series of neurodegenerative eventsand even death over the next two to three months, orto a self-limited event like a stroke-like episode thatgradually gets better.

In contrast, autistic regression that is associated withunrecognized mitochondrial dysfunction appears to bemore of a ‘flare’ response, similar to that suffered byHannah Poling and described in the scientific literature(Poling et al., 2006). A flare response typically occursearly, at the peak of the fever and inflammatoryresponse, within two to three days of infection (Table2.5.3). During a flare response, there is a high fever, oftenover 102�F, with hyper-irritablilty, crying, inconsolabil-ity, a disrupted sleep-wake cycle, and a refusal to walkin children who might otherwise appear to be physicallyable to walk, choosing rather to crawl (Poling et al.,

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THE POSSIBLE ROLE OF PURINERGIC SIGNALING IN AUTISM SPECTRUM DISORDERS 189

2006). Following a flare response, there can be a gradualevolution of other problems from persistent gastrointes-tinal problems and diarrhea, a gradual loss of languageover two to three months, with the onset of repetitivemovements, to gaze and social avoidance (Poling et al.,2006). It must be emphasized that a flare response isnot simply a high fever, or even a dramatic reaction toa high fever, like a febrile seizure. It is a multisysteminflammatory response that carries a risk of autisticregression in genetically susceptible children. Is itpossible that an unusually high fever is because ofa primed state of innate immunity associated with anelement of mitochondrial hyperfunction? Mutations inthe ryanodine receptor known to cause calcium releaseand mitochondrial heat production by uncoupling inmalignant hyperthermia result from induction ofprimed mitochondria (Yuen et al., 2012). Systemicinflammation not only triggers calcium release, but isa known trigger of excitotoxic amounts of ATP in thebrain (Gourine et al., 2007).

THE POSSIBLE ROLE OF PURINERGICSIGNALING IN AUTISM SPECTRUM

DISORDERS

How might all of the facts about the complex connec-tion between mitochondria and ASD be integrated intoa unified theory of pathogenesis? One possibility mightbe called a purinergic theory of autism. The metabolismof a child adjusts dynamically during development to

Microgli

ATP UTP

ATP

UTP

IL6

NO

IL10 ATP

P2X Receptors

P2Y Receptors

Presynaptic Terminal

Postsynaptic Terminal

Pannexin

Glutamate

Mitochondrion

Action of purinantagonist

Astrocyte

Ca2+

ER

ATP

Chemical gradient of extracellular nucleotides

Mitochondrion

2. ETIOLOGY OF AUTISM

match the changing environment by the process of meta-bolic matching. Changes in nutrition, infectious agents,environmental toxicants, and activity each cause meta-bolic mismatch that permits the cells and tissues toadapt to the current environment, and to strengthenthe response to future encounters. Rebound growth aftertransient metabolic inhibition can result in changes inthe time-dependent choreography of brain develop-ment. Mitocellular hormesis to severe stress can producea chronic and pathological increase inmany componentsof mitochondrial metabolism, and to an increase inextracellular ATP (eATP). eATP is a damage-associatedmolecular pattern (DAMP) that binds to purinergicreceptors (P2X and P2Y) on all cells, triggering innateimmunity and inflammation, alters brain synapseformation, and contributes to neurochemically mediatedexcitotoxicity. When this happens during vulnerableperiods of brain development, between the late firsttrimester and the first two years of life, the risk of ASDmight be increased.

Several excellent reviews on extracellular nucleotidesignaling via purinergic receptors have recentlyappeared (Abbracchio et al., 2009; Burnstock andVerkhratsky, 2009; Surprenant and North, 2009). P2Xreceptors are ATP-gated cation channels that regulatecalcium conductance. These are known as the iono-tropic purinergic receptors. P2Y receptors are G-proteincoupled receptors (GPCRs), collectively called themetabotropic purinergic receptors. In humans, thereare seven subclasses of P2X receptor, designatedP2X1–7. There are eight subclasses of P2Y receptor,

al Cell

ergic s

FIGURE 2.5.4 Purinergic regulation of synapto-genesis. ATP is a co-neurotransmitter at every synapsestudied to date. Mitochondria are the ultimate source ofextracellular ATP (eATP). The activity and usage of eachsynapse regulates that concentration of eATPsurrounding the synaptic junction. Microglial cellsmonitor synaptic activity and respond to eATP to eitherstabilize or inhibit synapse formation. Excitotoxicityresults in excessive eATP that binds to microglial puri-nergic receptors and stimulates neuroinflammation.ER ¼ endoplasmic reticulum; IL ¼ interleukin;NO ¼ nitric oxide.

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2.5. MITOCHONDRIA AND AUTISM SPECTRUM DISORDERS190

designated P2Y1, 2, 4, 6, 11, 12, 13, and 14 (P2Y 3, 5, 7, 8,9, and 10 were subsequently removed from the list)(Jacobson and Boeynaems, 2010). P2X receptors are allATP-gated. P2Y agonists differ according to subtype.ATP, UTP, ADP, UDP, and UDP-glucose are used selec-tively by different subtypes. EC50s are typically in themicromolar range. Nucleotide signaling via P2X andP2Y receptors mediates a large number of biologicalphenomena of relevance to autism. These includenormal synaptogenesis and brain development(Abbracchio et al., 2009), regulation of the PI3K/AKTpathway (Franke et al., 2009), control of immuneresponses and chronic inflammation (Pelegrin, 2008),gut motility (Gallego et al., 2008), gut permeability(Matos et al., 2007), taste chemosensory transduction(Surprenant and North, 2009), sensitivity to food aller-gies (Leng et al., 2008), hearing (Housley et al., 2002),innate immune signaling, neuroinflammation, antiviralsignaling, microglial activation, neutrophil chemotaxis,autophagy, and chronic pain syndromes (Abbracchioet al., 2009). Figure 2.5.4 illustrates the role of puriner-gic receptors in the types of cell which play a role innormal synapse formation. The role of purinergicsignaling in ASD has not yet been reported but is underactive investigation in the author’s laboratory. From theperspective of brain development and function, puri-nergic signaling represents an important new area forstudy in ASD as it has direct effects on pathways impli-cated in ASD (see Section 4).

SUMMARY

Recently, the connections between mitochondria andASD have become increasingly clear. The nature of thisconnection is more complex than previously thought.Simple reduction in mitochondrial function does notcause ASD. A small, but informative, fraction of autismis caused by single-gene defects or DNA copy numbervariations. The large majority of ASD is the result ofvariation in hundreds of genes and loci interactingwith environmental and other factors. The crossroadsof genes and environment is metabolism. Mitocellularhormesis is the adaptation of cellular and mitochondrialmetabolism to environmental change. Changes in nutri-tion, infectious agents, environmental toxicants, intellec-tual attention, and physical activity each play a role inmitocellular hormesis during children’s development.Definite mitochondrial disease is responsible for asmuch as 5% of ASD. However, pathological distur-bances in mitochondrial metabolism leading to excito-toxicity may lie at the heart of a larger proportion ofASD and this is an important area for future studies.

2. ETIOLOGY OF AUTISM

ACKNOWLEDGMENTS

RKN thanks the UCSD Christini Fund, the WrightFoundation, the Lennox Foundation, the Jane BotsfordJohnson Foundation, and the Hailey’s Wish Foundationfor their support. RKN thanks Roman Sasik, Gary Har-diman, and Narimene Lakmine for assistance in creatingthe chromosomal map of mitochondrial proteins.

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