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RESEARCH ARTICLE
The hemolymph proteome of the honeybee: Gel-based
or gel-free?
Annelies Bogaerts, Geert Baggerman, Evy Vierstraete, Liliane Schoofs and Peter Verleyen
Research Group of Functional Genomics and Proteomics, K. U. Leuven, Leuven, Belgium
Received: July 17, 2008
Revised: February 12, 2009
Accepted: February 23, 2009
The honeybee has an invaluable economic impact and is a model for studying immunity,
development and social behavior. The recent sequencing and annotation of the honeybee
genome facilitates the study of its hemolymph, which reflects the physiological condition and
mediates immune responses. We aimed at making a proteomic reference map of honeybee
hemolymph and compared gel-free and gel-based techniques. One hundered and four 2-DE
spots corresponding to 62 different proteins were identified. Eight identical 2-DLC experi-
ments resulted in the identification of 32 unique proteins. One repeat was clearly not
representative for the potential of the given 2-DLC setup. Only 27% of the identified
hemolymph proteins were found by both techniques. In addition, we found proteins of three
different viruses which creates possibilities for biomarker design. Future hemolymph studies
will benefit from this work.
Keywords:
2-DE / 2-DLC / Hemolymph / Honeybee
1 Introduction
The honeybee, Apis mellifera, is so important for humans
that it is among the first insects with a sequenced and
annotated genome [1]. Besides its role as model organism
for studying social instincts and behavioral traits, the
honeybee is crucial for agriculture as a facilitator of polli-
nation. Honeybees are the primary pollinating insects in the
United States and their impact on the crop yield and quality
was estimated at 14.6 billion dollars in 2000 [2]. Honeybees
also have a medicinal value. Their honey possesses anti-
bacterial activities [3] and propolis even antioxidative, anti-
ulcer and anti-tumor activities as well [4]. Furthermore bee
venom contains a series of pharmacologically fascinating
components. Melittin, apamin and mast cell degranulated
peptide have been identified and are now successfully used
in therapeutic treatments of arthritis [5], HIV [6–8] and
other disorders. Unfortunately, bee venom can elicit sting-
induced anaphylaxis and other serious allergic diseases as
well. The response to a bee sting has historically unfolded as
a prominent model to study allergic diseases. Furthermore,
the honeybee is an interesting model for the study of innate
defense mechanisms. As the conditions within the beehive
(constant temperature, high relative humidity, high popu-
lation densities and the food sharing) are ideal for the
growth of pathogens, honeybees must have evolved a
powerful immune system to cope with these circumstances.
Moreover, the honeybee’s reaction to pathogens resembles
that of humans. For example, Apis species generate a fever
in response to a colonial infection with the fungus Asco-sphaera apis [9] and middle-aged worker bees display hygie-
nic behavior to prevent specific pathologies [10]. The
honeybee might even be useful for the study of human
diseases. Although 77% of the 929 studied human disease
genes have orthologs in Drosophila, it is expected that the
Apis genome will elicit additional orthologs [11, 12]. The
above enumeration illustrates how valuable the study of
honeybees can be. The actual list of motives for the honey-
bee genome project was much longer www.genome.gov/
pages/research/sequencing/seqproposals/honeybee_genome.
pdf.
Plasma is always among the first samples to be examined
when new separation techniques are developed. Soon afterAbbreviations: OBP, odorant binding protein; RJ, royal jelly
Correspondence: Dr. Annelies Bogaerts, Research Group of
Functional Genomics and Proteomics, K. U. Leuven, Zoological
Institute, Naamsestraat 59, 3000 Leuven, Belgium
E-mail: [email protected]
Fax: 132-16-323902
& 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.com
Proteomics 2009, 9, 3201–3208 3201DOI 10.1002/pmic.200800604
the introduction of high-resolution 2-DE [13, 14] the tech-
nique was applied to study the human plasma proteins [15].
Many disease states and developmental processes have been
studied using human plasma. Like the human plasma
proteome reflects the state of the body, so does the hemo-
lymph of insects. Hemolymph is important for the recog-
nition and defense against micro-organisms; it is the major
place of resistance during infection. In order to study the
hemolymph proteome of Drosophila after infection [16, 17],
our group reported the first 2-DE database of Drosophilalarval hemolymph [18]. Meanwhile the hemolymph
proteome of the mosquito Anopheles gambiae [19] and the
silkworm Bombyx mori [20] became available. The recent
completion of the honeybee genome project allows now the
first studies on the honeybee using proteomics technologies.
So far, bee venom [21], royal jelly (RJ), pollen-bread [22] and
the hypopharyngeal gland secretome [23] have been
analyzed. Recently, Chan et al. used 1-DE in combination
with MS to study the caste differences in honeybee hemo-
lymph [24]. We, on the other hand, used both 2-DE MS and
2-DLC MS to analyze the hemolymph proteome of honeybee
workers. In this way, a first 2-DE database was established in
order to serve as a reliable reference for future physiological
studies of honeybee hemolymph.
2 Materials and methods
2.1 Animals
A. mellifera carnica were collected from a recognized
beekeeper and kept in an artificial beehive with sugars adlibitum for a maximum of 2 days before sample collection.
2.2 Sample collection and preparation
Bees were anesthetized with CO2 and kept on ice. Wings
were carefully removed on one side. Gentle squeezing
allowed collecting a droplet of hemolymph with a micro-
capillary. For every 2-DE gel or 2-DLC analysis, hemolymph
of 70 or 80 bees, respectively, was suspended in 80 or 100mL
of lysis solution containing 7 M urea, 2 M thiourea, 4%
CHAPS, 40 mM Tris, 1% DTT and Complete protease
inhibitor (Roche). The suspensions were sonicated five
times for 10 s and placed on ice during the intervals. Then
the samples were centrifuged for 12 min at 13 000 rpm
and 41C.
2.3 Gel-based technique
Supernatants were desalted using the PlusOne Mini Dialysis
Kit (GE Healthcare). Protein concentration was determined
by the method of Bradford [25]. Immobiline pH 3–10 NL
Drystrips (24 cm, GE Healthcare) were rehydrated overnight
in Destreak solution and 0.5% IPG buffer (GE Healthcare).
Samples containing 300mg of proteins were loaded in cups.
IEF was performed with the Ettan IPGphor Manifold (GE
Healthcare) at 201C and 50mA per IPGstrip; 3 h at 150 V, 3 h
at 300 V, 6 h at 1000 V and 8000 V until 50 000 Vh. Strips were
stored at �801C. Prior to SDS-PAGE, IPG strips were
immersed twice for 15 min in equilibration buffer (6 M urea,
50 mM Tris-Cl (pH 8.8), 30% glycerol and 2% SDS).
Respectively, DTT (1% w/v) and iodoacetamide 4% w/v were
added. Equilibrated strips were placed on top of a 1.5 mm
SDS-polyacrylamide gel (11.5% T; 2.6% C) and run in the
Ettan Daltsix (GE Healthcare) at 201C; 1 h at 600 V, 10 mA/gel
and 10 W; overnight at 600 V, 14 mA/gel and 15 W. After
separation, gels were stored in water containing 5% acetic
acid and 50% methanol. The 2-D gels were stained according
to Shevchenko et al. [26]. Spots were excised with a sterile
scalpel and in-gel digested with trypsin. Silver ions were
removed prior to digestion. To each spot, 25mL of 30 mM
potassium ferricyanide and 25mL of 100 mM sodium thio-
sulfate were added. The gel pieces were vortexed until the
brown color disappeared and rinsed with Milli-Q water.
Thereafter, we dehydrated the gel pieces three times with
50mL of ACN. Next, gel pieces were reswollen during 10 min
with 50mL of 100 mM ammonium bicarbonate and dehy-
drated again with ACN for 10 min. The last two steps were
repeated and spots were dried. For enzymatic digestion, gel
pieces were covered with 25mL of a digestion buffer (50 mM
ammonium bicarbonate and 5 mM CaCl2) containing 6 ng/
mL of trypsin (Promega) and incubated on ice for 45 min.
Following enzymatic digestion overnight at 371C, the resul-
tant peptides were extracted in three steps of each 30 min:
once with 80mL of 50 mM ammonium bicarbonate and twice
with 80mL of 50% ACN and 5% formic acid. The samples
were dried and prepared and analyzed by MALDI-TOF MS
(Bruker Reflex) as described by Vierstraete et al. [18]. Proteins
were identified through PMF using Mascot (Matrix Science).
One missed cleavage per peptide was allowed and an initial
mass tolerance between 0.3 and 0.1 Da was used in all sear-
ches. Carbamidomethylation was set as fixed modification,
oxidation (M) as variable. We searched three databases, the
general NCBI database and two on a local server: the Prere-
lease2 set from Beebase and all protein hits from NCBI with
[Apis] in the description. When PMF failed to identify the
protein, nanoLC-MS/MS was performed as described by
Baggerman et al. [27]. The LC system was connected in series
with the electrospray interface of the Q-TOF device. The
column eluent was directed through a stainless steel emitter
(Proteon). Needle voltage was set at 1650 V, and cone voltage
at 35 V. Nitrogen was used as nebulizing gas. Parent ions
with 2, 3 or 4 charges of sufficient abundance (threshold set
at 15 counts s�1) were automatically recognized by the soft-
ware (MassLynx 3.5, Micromass) and selected for fragmen-
tation. Argon was used as collision gas, and collision energy
was set at 25–40 eV. Fragmentation spectra were acquired
from m/z 50 to 2000. Spectra were then subjected to a Mascot
search using the two local databases mentioned.
3202 A. Bogaerts et al. Proteomics 2009, 9, 3201–3208
& 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.com
2.4 Gel-free technique
An aliquot of 100 mL of a 20% trichloroacetic acid solution
(41C) was added to the supernatants; incubation on ice was
for a maximum of 3 h. Next, the suspension was centrifuged
(15 min, 41C, 13 000 rpm); supernatant was removed.
Subsequently, we added 100 mL of acetone (�201C), carefully
vortexed the sample and placed it on ice for 5 min. After
centrifugation (10 min, 41C, 13 000 rpm) supernatant was
removed and pellet was left to dry at room temperature for
20 min. The pellet was resuspended in 40 mL of 200 mM
ammonium bicarbonate after which 2mg of trypsine was
added. Next, the sample was sonicated during 10 min and
incubated overnight at 371C. We filtered the sample through
a spin-down filter (Millipore) before analysis. 2-DLC MS/MS
experiments were conducted as described by Baggerman etal. [28]. PKL-files of the ten cycles were combined and
searched by Mascot using the two local databases. Para-
meters: peptide mass tolerance 0.6 Da, fragment mass
tolerance 0.3 Da, one missed cleavage, oxidation (HW) and
(M) as variable modifications. Criteria to evaluate the quality
of identifications from MS/MS data were: a protein score
greater than the significance threshold and at least two
unique peptides per protein. Significant identifications
based on one peptide were manually checked (see
Supporting Information).
3 Results and discussion
In this study, we created the first 2-DE map of hemolymph
proteins of honeybee workers (Fig. 1). The map is restricted
to proteins with a molecular mass ranging from 10 to
200 kDa and a pI from 3 to 10. The resolution of higher
molecular mass protein spots is not ideal. Note that the
hemolymph of an insect can be compared with the plasma
of vertebrates. Plasma gels typically display a bad resolution
due to the abundance of IgGs, albumins and other globu-
lins. Insect hemolymph lacks IgGs but does possess a large
amount of globulins (e.g. imaginal disc growth factor,
transferrin, arylphorins and hemolin), hampering an ideal
separation of higher MW proteins (Fig. 1 [20, 29]). The
application of clean up kits based on precipitation slightly
improved the resolution of test gels. However, as the
Figure 1. A representative 2-DE
gel image of the proteome of
worker bee hemolymph.
Proteomics 2009, 9, 3201–3208 3203
& 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.com
reproducibility and the number of detectable spots did not
benefit from the clean up, we opted to present an intensively
stained representative gel with a maximum number of
visible spots as a reference. A total of 104 spots, corre-
sponding to 62 different proteins, were identified with either
MALDI-MS or nanoLC-MS (Supporting Information).
In addition, we tested the potential of 2-DLC MS/MS by
running eight biologically independent experiments with
identical settings. This resulted in a total of 32 identified
proteins. Interestingly, a single 2-DLC experiment is not at
all representative. No less than 31% of these proteins were
identified in only one experiment (Fig. 2A). Figure 2B
clearly illustrates that even after eight experiments, new
proteins can still be identified. This might be due to the
limited capacity of the MS/MS device. While the mass
spectrometer selects one peak for fragmentation, co-eluting
peaks will not be fragmented. In a following experiment, the
device may randomly select other peaks, which will lead to
new identifications. In addition, peptide fragments from
abundant proteins are over-represented in the MS/MS
spectra. An important conclusion is that it is essential to
repeat a 2-DLC MS/MS experiment several times in order to
fully cover that part of the proteome that lays within the
potential of a given setup.
Comparing the data sets from the 2-DE and 2-DLC
experiments shows an overlap of only 27%. Other data
comparing gel-free and gel-based techniques are rare,
displaying a rather wide variation in overlap: 21 [30], 38 [31],
48 [32] and 54% [33] reflecting a similar variation in applied
equipment, protocols, software and samples. Interestingly,
the relative number of unique identifications differs even
more. Dumont et al. identified 45 proteins only by 2-DLC
and 114 only by 2-DE from a sample of mature rat oligo-
dendrocytes [30], whereas Wolff et al. found more unique
Bacillus subtilis proteins with 2-DLC (269) than with 2-DE
(200) [33]. These figures make clear that both techniques
potentially identify a different subset of proteins. 2-DE is
limited for the detection of extremely small, big or hydro-
phobic proteins. The main advantages of 2-DE, on the other
hand, are the simplified mass spectra and the possibility of
identifying proteins by PMF. Another positive aspect is that
the position of a 2-DE spot confines information on pI and
MW and thus a hint towards possible PTMs [34]. 2-DLC
allows identifying proteins from a much larger pI in a
completely automated way. A negative point is that some
identifications are based on just one peptide. These identi-
fications have to be manually checked to exclude all possible
false positives. We can conclude that although gel-free
techniques were developed to compensate for the drawbacks
of 2-DE, 2-DLC cannot be seen as a substitute technique for
proteomic research. Hence both techniques should be
regarded as complementary [35] and used to replenish each
other’s limitations.
The proteins in this study can be subdivided into differ-
ent categories according to their functional properties
(Fig. 3). The main protein categories are briefly discussed.
3.1 Enzymes
Enzymes are the most abundant group of hemolymph
proteins. We mainly identified proteins involved in the
carbohydrate metabolism such as alpha-glucosidase, triose-
phosphate isomerase and pyruvate kinase. The carbohy-
drate-metabolising enzymes may have particularly
interesting roles in the honeybee, as this insect primarily
feeds on nectar and pollen, which are extremely rich in
carbohydrates. Nutrition also seems to be the main factor in
Figure 2. Number of identified worker bee hemolymph proteins
throughout eight identical 2-DLC experiments. (A) The total
number of identified proteins increases with every repeat. (B)
Eight proteins were identified in every analysis, whereas ten
proteins were found in only one experiment.
enzymes
transport & storage
defense
MRJP
others
unknown
virus proteins
enzymes
transport & storage
structural proteins
defense
cell div., chrom. struct.
MRJP
others
unknown
virus proteins
34%
22%6%6%
13%
13%6%
37%
16%5%5%3%2%
11%
16%5%
2-DLC
2-DE
Figure 3. Pie charts representing the functional categories of the
hemolymph proteins identified with gel-free and gel-based
techniques. (cell div., chrom. struct. 5 cell division and chroma-
tin structure).
3204 A. Bogaerts et al. Proteomics 2009, 9, 3201–3208
& 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.com
caste determination as larvae fed with nutrient-rich RJ
become queens, whereas others become workers. In addi-
tion, it has been shown that the expression of genes
encoding carbohydrate-metabolising enzymes is associated
with the age-dependent behavioral changes of this insect
species [36, 37]. Proteinases and peptidases are not only
involved in food digestion but also play an important role in,
for example, development and immune responses. Serine
proteases, for instance, are known to regulate several innate
defense responses such as coagulation, antimicrobial
peptide synthesis and melanisation of pathogen surfaces.
The possible involvement of serine-protease-related genes in
immunity and embryonic development in the honeybee was
described by Zou [38]. Serine protease inhibitors from the
serpin superfamily regulate protease cascades in mammals
and arthropods [39]. In insect hemolymph, serpins inhibit
activated proteases to maintain homeostasis and prevent
unregulated activation of immune responses such as mela-
nisation or Toll-mediated antimicrobial protein synthesis
[40].
3.2 Structural proteins
Structural proteins are represented only by an actin, a
tubulin and a protein similar to forked CG5424-PA, isoform
A, which is involved in actin filament bundle formation.
3.3 Transport and storage proteins
The first insect iron-binding protein was described in
Manduca sexta [41]. Later on, insect transferrin genes were
cloned from Aedes aegypti [42], B. mori [43], Drosophilamelanogaster, D. sylvestris [44], Sarcophaga peregrina [45],
Riptortus clavatus [46] and A. mellifera [47]. Besides its role as
an iron transporter, transferrin displays multiple functions
in the honeybee. The upregulation of the gene after infec-
tion with Escherichia coli suggests a role in immunity [47].
The expression of transferrin is repressed by juvenile
hormone [47, 48] and transferrin also has an additional role
in vitellogenesis [49]. Hexamerins are large storage proteins
of insects that have evolved from the copper-binding
hemocyanins. They usually consist of six identical or similar
subunits. Their presence peaks in hemolymph of late larval
and early pupal stages after which it gradually declines
during metamorphosis and adult development [50]. We
found subunit 70a, which is the sole subunit that is also
present in a large amount in adult stages [51]. Olfaction
plays a central role in the life of an insect. Food odors and
sex pheromones are transported to the sensory receptors by
odorant binding proteins (OBPs). The genome of the
honeybee carries 21 genes encoding putative OBPs [51]. This
number is less than half the repertoire of OBP genes found
in D. melanogaster, A. gambiae or Triboleum castaneum. We
identified Obp13, 14 and 15, which in honeybees belong to a
monophyletic group of OBPs called the C-minus OBPs [51].
Obp 13 and 14 are expressed during relatively narrow
developmental stages. Unlike described by Foret in 2006, we
show here that Obp15 is exclusively expressed not only in
the antennae of adult bees but also in the hemolymph and
that Obp13 is expressed not only in pupae and larvae but
also in adult worker bees. Antennal-specific protein asp3c
efficiently binds fatty acid ester components of the brood
pheromone [52]. This pheromone is involved in the regu-
lation of behavior-like feeding of the larvae, capping of the
cells and thermoregulation of the brood area in the colony.
Take-out-like protein JHBP-1 and a protein similar to
CG5867-PA, isoform 1, have juvenile hormone-binding
properties. Retinoid- and fatty-acid binding protein is
involved in lipid transport.
3.4 Immune-related proteins
Specific pattern recognition molecules identified in this
study were two forms of a protein similar to Gram-negative
binding protein 1 CG6895-PA and a protein similar to
Peptidoglycan recognition protein SA CG11709-PA. This
latter protein could be the trigger for the activation of the
prophenoloxidase cascade. This cascade results in the
production of melanine and melanisation of pathogen
surfaces. The key enzyme in this process is phenoloxidase,
which is present as an inactive precursor (prophenoloxidase)
in the plasma or hemocytes. This prophenoloxidase is
converted to phenoloxidase by endogenous trypsin-like
serine proteases.
3.5 Other identified proteins
The cephalic glands of nurse bees secrete RJ, which consists
of 90% of MRJPs [22, 53–55]; eight loci encoding MRJPs
(mrjp1– mrjp8) have been identified [55–57]. Together with
the Yellow-related proteins, they form the MRJP/Yellow
protein family. Members of this family have not only a
nutritional function. The mrjp-1 gene, for example, is
expressed in the mushroom bodies of the honeybee, impli-
cating its involvement in behavior [58]. Furthermore, it
appears that the MRJP protein subfamily evolution from the
Yellow protein family may have coincided with the evolution
of honeybee eusociality [59]. Other proteins we found in the
hemolymph were heat shock proteins, pigments, a protein
similar to imaginal disc growth factor 4 and vitellogenins.
3.6 Virus proteins
Constructing a database with all NCBI proteins having [Apis]in their description allowed to identify proteins from known
honeybee pathogens. An interesting finding was the iden-
tification of a polyprotein derived from the Kakugo virus.
Proteomics 2009, 9, 3201–3208 3205
& 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim www.proteomics-journal.com
This Picorna-like virus was previously found only in the
honeybee brain and is believed to cause aggressive behavior
in honeybee workers [60]. Similar to other Picorna viruses,
the Kakugo virus is mainly transmitted by oral infection
between colony members. We also found a polyprotein
derived from the deformed wing virus and one from the
Varroa destructor virus. These two viruses are both trans-
mitted by Varroa destructor, a parasitic mite. Varroa can
replicate only within a honeybee colony. It feeds on hemo-
lymph, spreading RNA viral agents to the bee and leaving
their victims very weakened. This can cause serious losses in
case of a significant infestation of the colony. The fact that
these viral proteins were relatively easy to identify and
clearly visible on the gel makes them potential biomarkers.
4 Concluding remarks
The hemolymph of insects plays a very important role in the
transport and storage of nutrients and is crucial for the
recognition of and defense against micro-organisms. Our
aim was to create a 2-D reference map of the honeybee
hemolymph proteome. Comparing gel-based and gel-free
techniques, we identified a total of 74 proteins belonging to
different functional categories. Both techniques are
complementary, but 2-DLC MS/MS experiments require a
sufficient number of replicates. Moreover, we have shown
the presence of several viral proteins, which makes the
hemolymph an excellent candidate subject in biomarker
research. This study provides an initial picture of the
composition of the hemolymph proteome of A. mellifera,
which undoubtedly will pave the way for future physiologi-
cal studies of the honeybee.
The data from this publication are accessible from the World-2DPAGE database http://world-2dpage.expasy.org/0006/cgi-bin/2d.cgi.
A.B. and P.V. are a PhD fellow and a postdoctoral fellow,respectively, of the Research Foundation – Flanders (FWO-Vlaanderen). We would like to acknowledge Dr. Bart Landuytand Lieve Geenen. This work has been supported by Prometa –K.U.Leuven and by the FWO grant number G041708N.
The authors have declared no conflict of interest.
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