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Targeted Therapies for Advanced NSCLC Current Clinical Developments Friday, June 3, 2016 Supported by an independent educational grant from AstraZeneca Not an official event of the 2016 ASCO Annual Meeting Not sponsored or endorsed by ASCO or the Conquer Cancer Foundation

Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

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Page 1: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Targeted Therapies for Advanced NSCLC

Current Clinical Developments Friday, June 3, 2016

Supported by an independent educational grant from AstraZeneca

Not an official event of the 2016 ASCO Annual Meeting

Not sponsored or endorsed by ASCO or the Conquer Cancer Foundation

Page 2: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Disclaimer

• This slide deck in its original and unaltered format is for educational purposes and is current as of Friday, June 3, 2016. The content and views presented in this educational activity are those of the authors/presenters and do not necessarily reflect those of Creative Educational Concepts, Inc. or the supporter.

• These materials may discuss therapeutic products that have not been approved by the US Food and Drug Administration and off-label uses of approved products. A qualified healthcare professional should be consulted before using any therapeutic product discussed. Readers should verify all information and data before treating patients or employing any therapies or strategies described in this educational activity.

Page 3: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Usage Rights

• This slide deck is provided for educational purposes and individual slides may be used for personal, non-commercial presentations only if the content and references remain unchanged.

• No part of this slide deck may be published or distributed in print or electronic format without prior written permission from Creative Educational Concepts, Inc. Additional terms and conditions may apply.

Page 4: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

1. Review the molecular pathology of lung cancer and examine its relevance for clinical practice.

2. Outline the safety and efficacy of first-line therapies for advanced NSCLC, including first generation EGFR and ALK inhibitors.

3. Evaluate treatment approaches used to overcome EGFR and ALK resistance in advanced NSCLC, including the safety and efficacy of second- and third-line therapies and recommended molecular testing.

4. Appraise emerging concepts with EGFR TKIs and ALK inhibitors, including their role in adjuvant therapy, combination therapies, and other evolving data.

Learning Objectives

Page 5: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Molecular Pathology of Lung CancerOverview and Relevance for Clinical Practice

Page 6: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Pasi A. Jänne, MD, PhD Program DirectorLowe Center for Thoracic OncologyDana-Farber Cancer InstituteProfessor of MedicineHarvard Medical SchoolBoston, Massachusetts

Page 7: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

• Consultant for: AstraZeneca, Boehringer Ingelheim, Pfizer, Genentech, Roche, ARIAD, Chugai Pharmaceuticals, ACEA Biosciences, Merrimack Pharmaceuticals

• Research Funding: AstraZeneca, Astellas• Stockholder in: Gatekeeper Pharmaceuticals• Other: LabCorp – post-marketing royalties

from DFCI owned intellectual property on EGFR mutations

Disclosures

Page 8: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

EGFR

KRAS

BRAFHER2

PIK3CA

ALK

No known

genotype

ROS1NTRK1

RET

MET

EGFR

KRASKRAS

Lung AdenocarcinomaProgress in Identifying Genomic Alterations

2009

EGFR

KRAS

BRAF HER2PIK3CAALK

No known genotype

2004

2016

1984 - 2003

No known

genotype

No known

genotype

Page 9: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Gandara DR, et al. Clin Cancer Res. 2015; Liao RG, et al. Lung Cancer Manag. 2012.

Lung Squamous CarcinomaGenomic Alterations

FGFR1 amplification

FGFR mutation

FGFR fusion

PIK3CAmutation/amplificationDDR2 mutation

PDGFRA amplification

BRAF mutation

EGFR amplification

ERBB2 amplification

None

Page 10: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Metastatic NSCLC NCCN Guidelines Version 4.2016 SYSTEMIC THERAPY

FOR METASTATIC DISEASE

HISTOLOGIC SUBTYPE

TESTING TESTING RESULTS

Metastatic Disease

• Adenocarcinoma• Large Cell• NSCLC not

otherwise specified (NOS)

• EGFR mutation testing (category 1)

• ALK testing (category 1)

• EGFR and ALKtesting should be conducted as part of broad molecular profiling

• Consider EGFRmutation and ALKtesting especially in never smokers or small biopsy specimens, or mixed histology

• EGFR and ALK testing should be conducted as part of broad molecular profiling

See First-Line Therapy (NSCL-17)

See First-Line Therapy (NSCL-18)

See First-Line Therapy (NSCL-19)

See First-Line Therapy (NSCL-17)

See First-Line Therapy (NSCL-18)

See First-Line Therapy (NSCL-20)

• Establish histologic subtype with adequate tissue for molecular testing (consider rebiopsy if appropriate)

• Smoking cessation counseling

• Integrate palliative care(See NCCN Guidelines for Palliative Care)

Squamous cell carcinoma

Sensitizing EGFR mutation positive

ALK positive

Both sensitizing EGFR mutation and ALK are negative or unknown

Sensitizing EGFR mutation positive

ALK positive

Both sensitizing EGFR mutation and ALK are negative or unknown

Page 11: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Lindeman NI, et al. J Mol Diagn. 2013.

“The major recommendations are to use testing for EGFR mutations and ALK fusions to guide patient selection for therapy with an

epidermal growth factor receptor (EGFR) or anaplastic lymphoma kinase (ALK) inhibitor, respectively, in all patients with advanced-stage adenocarcinoma, regardless of sex, race, smoking history, or

other clinical risk factors, and to prioritize EGFR and ALK testing over other molecular predictive tests.”

Lung Cancer CAP/IASLC/AMP Guideline

Page 12: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

• Availability of test?

• How quickly can you get a result?

• Do you need to test for more than one genomic alteration?

• Cost?

• Will the result help in choosing a therapy and/or enrolling a patient into a clinical trial?

Genomic Tests Factors Affecting Choice

Page 13: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Gene Alteration Method LabEGFR Mutation Sequencing Molecular PathologyKRAS Mutation Sequencing Molecular PathologyALK Rearrangement FISH CytogeneticsFGFR1 Amplification FISH Cytogenetics

Genotyping can be multiplexed

FISH is difficult to multiplex

Need separate assays forALK, ROS, RET, MET, ERBB2, FGFR1

6 X $800 = $4800

Most NSCLC biopsies not amenable to 6 FISH tests & sequencing

Genomic Alterations Testing Methods

Page 14: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Meyerson M, et al. Nat Rev Genet. 2010.

Next-Generation SequencingTypes of Alterations Detected

Page 15: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Oncopanel DFCI/BWH Targeted NGS

Zutter MM, et al. Arch Pathol Lab Med. 2015.Neal Lindeman – Center for Advanced Molecular Diagnostics at Brigham and Woman’s Department of Pathology.

ABL1AKT1AKT2AKT3ALKALOX12BAPCAR ARAFARID1A ASXL1ATMATRXAURKAAURKBAXL B2MBAP1BCL2L12BCL6BCORBCORL1BLMBMPR1ABRAFBRCA1BRCA2

BRD4BRIP1BUB1BCARD11CBLCBLBCCND1CCND2CCND3CCNE1CD274CD58CD79BCDC73CDH1CDK1CDK2CDK4CDK5CDK6CDK9CDKN2ACDKN2BCDKN2CCEBPACHEK2CIITA

CREBBPCRKLCRLF2CRTC1CRTC2CTNNB1CUX1CYLDDDB2DDR2DICER1DIS3DMDDNMT 3AEED EGFREP 300EPHA3EPHA5EPHA7ERBB2ERBB3ERBB4ERCC2ERCC3ERCC4ERCC5

ESR1ETV1ETV4ETV5ETV6EWSR1EXT1EXT2EZH2FAM46CFAMCAFANCCFANCD2FANCEFANCFFANCGFAS FBXW7FGFR1FGFR2FGFR3FGFR4FHFKBP9FLCNFLT1FLT3

FLT4FUSGATA3GATA4GATA6GLI1GLI2GLI3GNA11GNAQGNASGPC3GSTM5H3F3AHNF1AHRASID3IDH2IGF1RIGH@IgK@IgL@IKZF1IKZF3JAK2JAK3KDM6B

KDRKITKRASLMO1MAP2K1MCL1MDM2MDM4MECOMMEF2BMEN1METMITFMLH1MLLMLL2MPLMSH2MSH6MTORMUTYHMYBMYBL1MYCMYCL1MYCNMYD88

NBNNF1NF2NFE2L2NFKBIANFKBIZFKX2-1NOTCH1NOTCH2NPM1NRASNTRK3PALB2PARK2PAX5PDCD1LG2PDGFRAPDGFRBPHF6PHOX2BPIK3C2BPIK3CAPIK3R1PIM1PMS1PMS2PNRC1

PRAMEPRDM1PRF1PRKAR1APRKCIPRKDCDPRPF40BPRPF8PSMD13PTCH1PTENPTK2PTPN11RAD21RAF1RARARB1RBL1RECQL4RELRETRFWD2RHPH2ROS1RPL26RUNX1SBDS

SDHAF2SDHBSDHCSDHDSETBP1SF1SF3B1SH2B3SMAD2SMAD4SMARCA4SMARCAB1SMC1ASMC3SMOSOCS1SOX2SRCSRSF2STAG1STAG2STAG3STK11SUFUSUZ12SUKTCF3

TERCTERTTET2TNFAIP3TP53TRA@TRB@TRG@TSC1TSC2U2AF1VHLWRNWT1XPAXPCXPO1ZNF708ZRSR2

Page 16: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Molecular Testing of NSCLC DFCI Algorithm

Clinical Targeted NGS300 genes

Rearrangements in 30 genes

Advanced NSCLC Receiving therapy

Advanced NSCLC Treatment naive

Clinical Targeted NGS300 genes

Rearrangements in 30 genes

Rapid EGFRALK & ROS1 IHC

Neal Lindeman & Lynette Sholl – Center for Advanced Molecular Diagnostics at Brigham and Woman’s Department of Pathology.

Turn Around Time: 2-3 weeks

Turn Around Time: 2-3 weeks

Turn Around Time: 48-72 hours

Page 17: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Molecular Testing of NSCLC NGS in The Clinic

• Targeted NGS has been adopted as our standard genotyping assay.−Results appear in medical record

• Initial experience (ASCO 2014)−Ordered on 188 pts from 7/13 – 12/13−51 (27%) insufficient−Median turnaround time was 24 days

Oxnard GR, et al. ASCO. 2014.

Page 18: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Oxnard GR, et al. ASCO. 2014.

Alteration type Non-squamous (N=117) Squamous (N=17)N % N %

Point mutations EGFR 13 11% - -BRAF 6 5% 1 6%PIK3CA 6 5% 4 24%KRAS 41 35% 1 6%

Insertions/deletionsEGFR 7 6% - -HER2 2 2% - -

RearrangementsALK 4 3% - -ROS1 - - - -RET 1 1% - -

High amplificationEGFR 3 3% - -HER2 - - - -MET 4 3% - -PIK3CA 1 1% 2 12%FGFR1 1 1% - -

NSCLC Spectrum of Genomic Alterations

Page 19: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Oxnard GR, et al. ASCO. 2014.

NGS in The Clinic It Can Help Guide Clinical Management

61 yo never smoker; s/p 1st line chemotherapy; tumor pan “wild type” by conventional genomic assays

Page 20: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Oxnard GR, et al. ASCO. 2014.

NGS in The Clinic It Can Help Guide Clinical Management

61 yo never smoker; s/p 1st line chemotherapy; tumor pan “wild type” by conventional genomic assays

Baseline After 3 months

• Patient initiated second-line erlotinib at 150 mg daily and had a response in lung mass

• Developed progression in brain after 5 months, but systemic response has been sustained now 9 months on erlotinib

Page 21: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

EGFR

KRAS

BRAFHER2

PIK3CA

ALK

No known

genotype

ROS1NTRK1

RET

MET

EGFR

KRASKRAS

Lung AdenocarcinomaProgress in Identifying Genomic Alterations

2009

EGFR

KRAS

BRAF HER2PIK3CAALK

No known genotype

2004

2016

1984 - 2003

No known

genotype

No known

genotype

Page 22: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Shaw AT, et al. N Engl J Med. 2014; Mazières J, et al. J Clin Oncol. 2015.

Crizotinib in ROS1-rearranged NSCLC Efficacy

Disease progressionStable diseasePartial responseComplete response

100

80

60

40

20

0

-20

-40

-60

-80

-100

Chan

ge fr

om b

asel

ine

(%)

* M A

RR: 72%; PFS: 19.2 months

120

10080

60

40

200

-20

-40

-60

-80

-100

-120

Chan

ge (%

)

93100

28

0 0

-30 -30-40 -40-40-40-44-45-50

-52-55-59

-65-66-69-70-75-80

-90-100-100 -100-100

-100

No. of previous lines of

chemotherapy before

crizotinib

5 3 4 4 5 1 1 1 1 4 6 3 4 1 1 5 4 3 9 2 1 4 2 5 0 1 1 2 2

RR: 80%; PFS: 9.1 months

Page 23: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Paik, et al. J Clin Oncol. 2011; Marchetti, et al. J Clin Oncol. 2011; Cardarella, et al. Clin Cancer Res. 2013.

NSCLC Summary of BRAF Mutations

Author N Histology Stage TestingPaik 697 ADC I-IV V600, D594, G469

Marchetti 1046 ADC & SCC I-IV Exons 11 & 15

Cardarella 883 ADC I-IV Exons 11 & 15

Exon 11 Ex 12 Ex 13 Ex 14 Exon 15

V600E

V600L, K601 E/N, T599_V600InsT, V600E_K601delInsE

W604R, G606 A/VL597 R/V/Q

D594 G/N

G469AG464 E/V

G469delG466 V/R

Page 24: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Frequency of BRAF MutationsMelanoma vs Lung Adenocarcinoma

V600E

Non-V600E

V600ENon-

V600E

Melanoma Lung Adenocarcinoma

Page 25: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Davies H, et al. Nature. 2002; Platz A, et al. Mol Oncol. 2008; Karasarides M, et al. Oncogene. 2004; Long, et al. N Engl J Med. 2014; Gilmartin, et al. Clin Cancer Res. 2011.

Inhibiting MAPK/ERK PathwayDabrafenib and Trametinib

Dabrafenib mode of action• Reversible, small molecule • BRAF inhibitor • ATP competitive• BRAF V600E: IC50 0.65 nM

Trametinib mode of action• Reversible, small molecule • MEK1 and MEK2 allosteric

inhibitor • MEK1 and MEK2: IC50 0.7

and 0.9 nM

PI3K/AKT/mTORpathway

Proliferation, Growth, Survival

MEK

p90RSK MSK1

BRAF CRAF

BRAFV600

ERK1/2

RAS

DabrafenibTrametinib

RTKs SOSGrb2SHCPPPP

PP

Page 26: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Planchard D, et al. Lancet Oncol. 2016.

BRAF V600E NSCLCDabrafenib Monotherapy

Max

imum

Per

cent

Red

uctio

n fr

om B

asel

ine

Mea

sure

men

t

SDPDNE

PRBest Confirmed Response

380

360

340

100

80

60

40

20

0

-20

-40

-60

-80

-100

RR: 33%PFS: 5.5 months

Page 27: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Planchard D, et al. ASCO. 2015.

BRAF V600E Metastatic NSCLCDabrafenib + Trametinib

Max

imum

Per

cent

Red

uctio

n at

Tim

e of

Bes

t D

isea

se A

sses

smen

t

20

10

0

-10

-20

-30

-40

-50

-60

-70

-80

-90

-100

Best Confirmed ResponsePRSDPD

One patient discontinued at day 23 and did not have any post-baseline scans for efficacy.

RR: 63%PFS: Not Reached

Page 28: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Break

32,316,377 bp

KIF5BATG ATG

RET Break

43,611,118 bp

ATGATG

KIF5B-RETRET-KIF5B

RET-KIF5B Translation

Cadherin

Not expressedKIF5B (exons 16-25) RET (exons 1-11)

TranslationKIF5B-RET

Kinesin Coiled coil Tyrosine kinaseKIF5B (exons 1-15) RET (exons 12-20)

Expressed

Lung AdenocarcinomaALK and RET Gene Fusions

Several drugs (sunitinib, sorafenib, vandetanib, cabozantinib) inhibit RET but none are specific RET inhibitors

Lipson D, et al. Nat Med. 2012.

Page 29: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Best Response % (N)

PR 44% (7/16)

Confirmed 38% (6/16)

Unconfirmed 6% (1/16)

SD 56% (9/16)

ORR 38% (95% Cl 15%-65%)

ORR12wks 36% (95% Cl 13%-65%)(5 PRs of 14 evaluable at 12 wks)

30%

0%

-30%

-60%

-90%

Confirmed PRSD

RET-Rearranged Lung AdenocarcinomaResponse to Cabozantinib

Drilon AE, et al. ASCO. 2015.

Page 30: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Awad MM, et al. J Clin Oncol. 2016.

NSCLCMET Exon 14 Skip Mutations

MET exon 14 cancers can have METamplification and/or high level of MET

expression

KRAS (34%)

No oncogenic mutation

identified (30%)

EGFR (19%)

ALK (3.9%)

BRAF (3.8%)

MET ex14 (3%)

PIK3CA (2.9%)

ERBB2 (2.5%)

NRAS (1%)

RET (1%)

ROS1 (1%)AKT (<1%)

HRAS (<1%)

MAP2K1 (<1%)

Prevalence of MET exon 14 skip mutations

Page 31: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Awad MM, et al. J Clin Oncol. 2016.

MET Exon 14 Skip TumorsSensitive to MET Inhibitors

Pre-Treatment On Crizotinib (at 2 months)

Page 32: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

NSCLC With Genetic Alterations Emerging Targeted Agents

Clinical Practice Guidelines. NCCN. 2016.V4.

Genetic Alteration (eg, driver event)Available Targeted Agents with Activity Against Driver Event in

Lung CancerBRAF V600E mutation* vemurafenib

dabrafenibdabrafenib + trametinib

High level MET amplification or MET exon 14 skipping mutation

crizotinib

RET rearrangements cabozantinibROS1 rearrangements crizotinibHER2 mutations trastuzumab (category 2B)

afatinib (category 2B)*Non-V600E mutations have variable kinase activity and response to these agents

Page 33: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Do Genomic Changes Predict for Sensitivity to Immunotherapy?

Page 34: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Mutation Load Across Cancer TypesHigh Mutational Burden in Lung Cancer

Alexandrov LB. Nature. 2013.

1000/Mb

100/Mb

10/Mb

1/Mb

0.1/Mb

0.01/Mb

n= 2 20 133

26 23 53 114

227

14579180 63 11 216

384

213

51 20 231

186

178

6944 274

7349 96

Som

atic

mut

atio

n ra

te

Rhab

doid

LAM

Ewin

g

AML

Med

ullo

Carc

inoi

d

Thyr

oid

NB

CLL

LGG

Brea

st

Pros

tate

Panc

reas

MM

Kidn

eyRP

Kidn

eyRC OV

GBM

Ute

rine

Cerv

ical

CRC

Head

Nec

k

DLBC

L

Stom

ach

Esop

h

Blad

der

LUAD

LUSC

Mel

anom

a

C > TC > AC > GT > CT > AT > G

20

Page 35: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Anti-PD-1/PD-L1 mAbs in NSCLCImpact of Smoking Status

AgentORR, % (n/N)

Current/former smoker Never smoker

Pembrolizumab1,2 26%(NR/129)

8%(NR/60)

Atezolizumab3,4 26%(11/43)

10%(1/10)

AgentORR, % (n/N)

>5 pack-years ≤5 pack-years

Nivolumab5 37%(19/52)

0%(0/10)

1Garon E, et al. WCLC. 2013. (Abstract MO18.02); 2Garon E, et al. ASCO. 2014. (Abstract 8020); 3Horn L, et al. WCLC. 2013. (Abstract 2347); 4Soria J, et al. ECC. 2013. (Abstract 3408); 5Hellmann MD, et al. ESMO. 2014. (Abstract 1229PD)

NR=not reported

Page 36: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

DCB NDB

All Tumors

# N

onsy

nony

mou

s m

utat

ions

/tum

or

1200

800

400

200

0

# N

onsy

nony

mou

s m

utat

ions

/tum

or

1200

800

400

200

0

Validation Cohort

DCB NDB

800

600

400

200

0

# N

onsy

nony

mou

s m

utat

ions

/tum

or

DCB NDB

Discovery Cohort100

50

0

% S

ensi

tivity

1 - % Specificity50 100

High nonsynonymous burdenLow nonsynonymous burden

High nonsynonymous burdenLow nonsynonymous burden

Perc

ent p

rogr

essi

on-fr

ee

Perc

ent p

rogr

essi

on-fr

eeMonths Months

Validation Cohort All Tumors

100

50

0

100

50

0

4 8 12 16 20 244 8 12 16 20 24 4 8 12 16 20 24

High nonsynonymous burdenLow nonsynonymous burden

Perc

ent p

rogr

essi

on-fr

ee

Months

Discovery Cohort

100

50

0

Clinical Benefit of Anti-PD-1 TherapyEffect of Nonsynonymous Mutation Burden

Rizvi NA, et al. Science. 2015.

Page 37: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Clinical Benefit of Anti-PD-1 TherapyEffect of Molecular Smoking Signature

Rizvi NA, et al. Science. 2015.

(n=18) (HR 0.15, 95% 0.06-0.39, log-rank P=.0001)

100

Months

Perc

ent p

rogr

essi

on-fr

ee

50

04 8 12 16 20 24

Transversion highTransversion low

Page 38: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Anti-PD-1/PD-L1 mAbs in NSCLCImpact of EGFR, KRAS Status

AgentORR, % (n/N)

Mutant Wild-type Unknown

Nivolumab1 17% (2/12) 20% (11/56) 15% (9/61)Atezolizumab2,3 17% (1/6) 23% (9/40) NR

1Gettinger SN, et al. J Clin Oncol. 2015; 2Horn L, et al. WCLC. 2013. (Abstract 2347); 3Soria J, et al. ECC. 2013. (Abstract 3408)

EGFR Status

KRAS Status

AgentORR, % (n/N)

Mutant Wild-type Unknown

Nivolumab1 14% (3/21) 25% (9/36) 14% (10/72)Atezolizumab2 10% (1/10) 30% (8/27) NR

NR=not reported

Page 39: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Clinical Benefit of Anti-PD-1 TherapyOS in Predefined Subgroups

Borghaei H, et al. N Engl J Med. 2015.

Nivolumab Better

Docetaxel Better

0.25 0.5 1 2 4

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Noninvasive Detection of Response and Resistance

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Liquid BiopsyCirculating Tumor-Derived Cells or DNA

Crowley E, et al. Nat Rev Clin Oncol. 2013.

Page 42: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Plasma ddPCRDetection of Mutations in ctDNA

Oxnard GR, et al. Clin Cancer Res. 2014.

EGFR L858R KRAS G12C100

80

60

40

20

0

0 20 40 60 80 100

AUC=0.86 (0.71-1.01)

False positive rate (%)

Sens

itivi

ty (%

)

100

80

60

40

20

0

0 20 40 60 80 100

AUC=0.9 (0.76-1.04)

False positive rate (%)

Sens

itivi

ty (%

)

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Plasma ddPCRNon-Invasive Disease Monitoring

Oxnard GR, et al. Clin Cancer Res. 2014.

Serial monitoring for EGFR activating and EGFR T790M resistance mutation in erlotinib treated EGFR mutant patients

Stage IV NSCLCEGFR mutant

Treatment naive

Erlotinib

150 mg

Biopsy at resistanceCirculating tumor cells

Plasma for ctDNA

5000

1000

100

10

0 8 16 24 32 40 48 56 64N/D

PD

Weeks on treatmentEG

FR m

utat

ion

Conc

entr

atio

n/

100µ

L of

DN

A

5000

1000

100

10

0 8 16 24 32 40 48 56 64N/D

PD

Weeks on treatment

EGFR

mut

atio

n Co

ncen

trat

ion

/ µL

of D

NA

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Prospective ValidationDFCI# 14-147 Schema

Cohort 3: Genotyped patients starting new treatment

*(Only patients with a detectable plasma

genotype who are starting a new systemic therapy)

Follow until progression (advanced

pts)

Diagnostic analysis Follow-up analysis*Enrollment

Compare plasma &

tumor genotype

2 bloodspecimens on therapy

Collect 2 pairedblood

specimens

Cohort 1: First-line patients

Cohort 2: Acquired resistance patients

Same day registration and initial blood draw

Adrian Sacher, Geoff Oxnard, Cloud Paweletz

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Detection of EGFR and KRAS MutationsValidation of Plasma Genotyping

Sacher AG, et al. JAMA Oncol. 2016.

100%

80%

60%

40%

20%

Assa

y se

nsiti

vity

Number of metastatic sites

01 2 3 >4

100000

10000

1000

100

10

N/D

Mut

atio

n co

ncen

trat

ion/

mL

of

plas

ma

Tissue Genotype

EGFR exon19 del assay

EGFRL858Rassay

EGFRT790Massay

KRASG12Xassay

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Plasma ddPCR Advantages

Sacher AG, et al. JAMA Oncol. 2016.

Day 0: Plasma ddPCR

ordered

Day 0: Repeat biopsy

ordered

Day 1: EGFR

T790M plasma positive

Day 25: EGFR

T790M tissue

positive

Day 31: osimertinib

initiated

24 day delay in initiating therapy while awaiting

tissue genotyping

Symptomatic disease progression

on erlotinib

Clinical and radiographic

response to AZD9291

• Plasma ddPCR detected EGFR and KRAS mutations rapidly with the high specificity needed to select therapy and avoid repeat biopsies.

• Plasma ddPCR may also detect EGFR T790M missed by tissue genotyping due to tumor heterogeneity in resistant disease.

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Plasma NGS Detects Actionable Genomic Alterations

MET

copy

num

ber

EGFR T790M

RET

EGFR C797S

KIF5

EGFR KELREATSPK>KENSPK

Paweletz CP, et al. Clin Cancer Res. 2016.

RET Rearrangement MET amplification

EGFR TKI resistance Novel EGFR mutation

522511Sample

18 105

3.5

3.0

2.5

1.5

2.0

KIF5

Page 48: Targeted Therapies for Advanced NSCLC - … Pathology of Lung Cancer...Targeted Therapies for Advanced NSCLC. Current Clinical Developments . ... RET MET EGFR KRAS KRAS ... MECOM

Molecular Pathology of Lung Cancer Summary

• Genomic testing can identify targetable drug sensitive alteration.

• Multiplex genomic testing should be standard of care.− Identify both common and rare but targetable

alterations−May help select patients more likely to benefit

from immunotherapy• Blood testing is rapidly evolving and will

complement and/or augment tissue based testing.

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