TABLES I. Reports on Isolation of Bacteria ... - JST

TABLES

I. Reports on Isolation of Bacteria

(including Chlamydiae, Fungi, Spirochetes and Protozoa)

TABLES

Table I. The number of bacteria isolated from human sources, Japan, 1996..60

I-1. Prefectural and municipal public health institutes and

health centers, infectious diseases hospitals and quarantine

stations •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c60

I-2. General clinical institutions •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c62

Table II. Isolation of bacteria from human sources, by month, Japan, 1996•c 63

II-1. Prefectural and municipal public health institutes and

health centers •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c63

II-2. Quarantine stations •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 65

II-3. Infectious diseases hospitals •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 66

II-4. General clinical institutions •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c68

Table III. Salmonella serovars isolated in Japan, 1996•c•c•c•c•c•c•c•c•c•c•c•c 73

III-1. Salmonella serovars, by source, 1996

- Prefectural and municipal public health institutes and


III-2. Salmonella serovars from human sources, by specimen, 1996- General clinical institutions •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c76

III-3. Fifteen most common Salmonella serovars from human

sources, by participating laboratory, 1996

- Prefectural and municipal public health institutes and


Table IV. Phage types of S. Typhi and S. Paratyphi A isolated from

human sources, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 79

IV-1. S. Typhi phage types from human sources, by month, 1996•c•c•c•c•c79

IV-2. S. Paratyphi A phage types from human sources,

by month,1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c79

IV-3. S. Typhi phage types from human sources, by place of residence

of the source case, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c80

IV-4. S. Paratyphi A phage types from human sources,

by place of residence of the source case, 1996•c•c•c•c•c•c•c•c•c•c•c•c81

Table V. Group A Streptococcus, serotypes isolated from human sources,

Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c82

V-1. Group A Streptococcus serotypes from human sources, by month,

1996

- Prefectural and municipal public health institutes and health

centers •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c82


1996

- General clinical institutions •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c83

Table VI.Isolation of bacteria from human sources, by year, Japan,

1991-1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c84

VI-1. Prefectural and municipal public health institutes and


VI-2. Quarantine stations •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c86

VI-3. Infectious diseases hospitals •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c88

VI-4. General clinical institutions •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c90

59

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Table I. The number of bacteria isolated from human sources, Japan, 1996

I-1. Prefectural and municipal public health institutes and health

centers, infectious diseases hospitals and quarantine stations

( ) : Imported cases included in the total

* Including health centers

** Others

Prefectural and municipal public health institutesAeromonas caviae, Klebsiella oxytoca, Mycobacterium avium, Pseudomonas aeruginosa

Infectious diseases hospitalsAeromonas spp., Vibrio furnissii, Campylobacter spp., Klebsiella oxytoca,Morganella morganii, Clonorchis sinensis, Cryptosporidium parvum, Diphyllobothrium

latum, Diphyllobothrium nihonkaiense, Diphyllobothrium sp., Giardia lamblia, Heterophyes heterophyes, Taenia saginata

Quarantine stationsVibrio furnissii

60

Jpn. J. Med. Sci. Biol., 1997

I-1. (Continued)

F. colr categorized by pathogenicity ( ) :Imported cases included in the total

Shigella serovars

* Including health centers

Vol. 50, Suppl.

I-2. General clinical institutions

( ):Imported cases included in the total

*1)FLUID:Needle biopsy (thoracic fluid, ascites, synovial fluid, etc.)2)CSF :Cerebrospinal fluid3)NASOPH. : Nasopharyngeal source4)L.RESP.:Respiratory secretions (sputum, tracheal aspirates, specimen of the lower

respiratory tract)5)GENIT. :Genitourinary source

62


Table II. Isolation of bacteria from human sources, by month, Japan, 1996

II-1. Prefectural and municipal public health institutes and health centers( ):Imported cases included in the total

63

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II-1. (Continued)( ) :Imported cases included in the total

64


II-2. Quarantine stationsImported cases

65

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II-3. Infectious diseases hospitals

( ):Imported cases included in the total

In addition, rotaviruses, adenoviruses and SRSV were detected in 82(1), 5 and 1 cases, respectively

66


II-3. (Continued)

( ) :Imported cases included in the total

67

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II-4. General clinical institutions

II-4-1. Specimen: Stool


68


II-4-1. (Continued)


69

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II-4-2. Specimen: Needle biopsy (thoracic fluid, ascites, synovial fluid, etc.)

II-4-3. Specimen: Cerebrospinal fluid

II-4-4. Specimen: Blood( ) :Imported cases included in the total

70


II-4-5. Specimen: Nasopharyngeal source

II-4-6. Specimen: Respiratory secretions (sputum, tracheal aspirates,

specimen of the lower respiratory tract)

II-4-7. Specimen: Urine

II-4-8. Specimen: Genitourinary source

71

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II-4-9. Staphylococcus aureus isolates categorized by sensitivity to

methicillin

FLUID : Needle biopsy (thoracic fluid, ascites, synovial fluid, etc.)CSF : Cerebrospinal fluidL.RESP.: Respiratory secretions (sputua, tracheal aspirates, specimen of the lower respiratory tract)

MRSA : aethicillin resistant Staphylococcus aureusMSSA : aethicillin sensitive Staphylococcus aureus

72


Table III. Salmonella serovars isolated in Japan, 1996

III-1. Salmonella serovars, by source, 1996- Prefectural and municipal public health institutes and health

centers


73

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III-1. (Continued)( ):Imported cases included in the total

74


III-1. (Continued)


75

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III-2. Salmonella serovars from human sources, by specimen, 1996- General clinical institutions


76


III-2. (Continued)

( ): Imported cases included in the total

77

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III-3. Fifteen most common Salmonella serovars from human sources,

by participating laboratory, 1996- Prefectural and municipal public health institutes and health

centers( ) :Imported cases included in the total

P.:prefecture C.:city M.:metropolitan

78


Table IV. Phage types of S. Typhi and S. Paratyphi A isolated from

human sources, Japan, 1996

IV-1. S. Typhi phage types from human sources, by month, 1996Phage typing: Laboratory of Enteric Infection II

Department of Bacteriology, NIID

* DVS : Degraded Vi-positive strain

** UVS : Untypable Vi-positive strain

* * * NT : Not tested

IV-2. S. Paratyphi A phage types from human sources, by month, 1996

* UT: Untypable

* * NT : Not tested

79

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IV-3. S. Typhi phage types from human sources, by place of residence of the

source case. 1996

* DVS : Degraded VI-positive strain

** WS : Untypabie Vi-positive strain

*** NT : Not tested

( ) imported cases included in the total

80


IV-4. S. Paratyphi A phage types from human sources, by place of

residence of the source case, 1996

* UT: untypable

** NT : Not tested

( ) : Imported cases included In the total

81

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Table V. Group A Streptococcus serotypes isolated from human sources, Japan,

1996


1996- Prefectural and municipal public health institutes and health

centers

82



1996- General clinical institutions

V-2-1. Specimen: Nasopharyngeal source

V-2-2. Specimen: Respiratory secretions (sputum , tracheal aspirates, specimen of the lower respiratory tract)

83

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Table VI. Isolation of bacteria from human sources, by year, Japan, 1991-1996

VI-1. Prefectural and municipal public health institutes and health centers


84


VI-1. (Continued)

F. coli categorized by pathogenicity ( ) :Imported cases included in the total

85

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VI-2. Quarantine stations

Imported cases

86


VI-2. (Continued)

E colt categorized by pathogenicity Imported cases

Shrgella serovars

87

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VI-3. Infectious diseases hospitals


88


VI-3. (Continued)

E. coll categorized by pathogenicity ( ) :Imported cases included in the total

Sfigella serovars

89

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VI-4. General clinical institutions

VI-4-1. Specimen: Stool( ) :Imported cases included in the total

E. coli categorized by pathogenicity

Shigella serovars

90


VI-4-2. Specimen: Needle biopsy (thoracic fluid, ascites, synovial fluid, etc.)

VI-4-3. Specimen: Cerebrospinal fluid

VI-4-4. Specimen: Blood


91

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VI-4-5. Specimen: Nasopharyngeal source


VI-4-6. Specimen: Respiratory secretions (sputum, tracheal aspirates, specimen of the lower respiratory tract)

VI-4-7. Specimen: Urine

VI-4-8. Specimen: Genitourinary source

92

TABLES

II. Reports on Isolation of Viruses

(including Rickettsiae, Chlamydiae and Mycoplasmas)

TABLES

Table I. Isolation/detection of viruses from human sources, by month,

Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 96

Table II. Isolation/detection of viruses from human sources, by age of the

source case, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 97

II-1. Age in years •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 97

II-2. Age groups •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 98

II-3. Infants •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 99

Table III. Isolation/detection of viruses from human sources, by sex of the

source case, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 100

Table IV. Isolation/detection of viruses from human sources, by source of

specimens, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 101

Table V. Isolation/detection of viruses from human sources, by clinical

diagnosis of the source case, Japan, 1996•c•c•c•c•c•c•c•c•c•c•c•c102

Table VI. Isolation/detection of viruses from human sources, by clinical

condition of the source case, Japan, 1996•c•c•c•c•c•c•c•c•c•c•c•c103

Table VII. Isolation/detection of viruses from human sources, by method of

isolation, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c104

Table VIII. Isolation/detection of viruses from human sources, by reason for

specimen collection, Japan, 1996•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 105

Table IX. Isolation/detection of viruses from human sources, by institution,

Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c105

Table X. Isolation/detection of viruses from human sources, by place of

residence of the source case, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c106

Table XI. Isolation/detection of viruses from human sources, by

participating laboratory, Japan, 1996•c•c•c•c•c•c•c•c•c•c•c•c•c108

Table XII. Isolation of viruses from nonhuman sources, by month,

Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 110

Table XIII. Isolation of viruses from nonhuman sources, by source

and specimen, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c110

Table XIV. Isolation of viruses from nonhuman sources, by method of

isolation, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 110

Table XV. Isolation of viruses from nonhuman sources, by reason for

specimen collection, Japan, 1996•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 110

Table XVI. Isolation of viruses from nonhuman sources, by participating

laboratory, Japan, 1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 110

Table XVII. Isolation/detection of viruses from human sources, by year, Japan,

1991-1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 111

Table XVIII. Isolation of viruses from nonhuman sources, by year, Japan,

1991-1996 •c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c•c 113

95

Vol. 50, Suppl.

Table I. Isolation/detection of viruses from human sources, by month, Japan,

1996Based on the data received before September 30, 1997

NT:Not typed

96


Table II. Isolation/detection of viruses from human sources, by age of the source

case, Japan, 1996II-1. Age in years

Based on the data received before September 30, 1997

NT : Not typed

97

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II-2. Age groupsBased on the data received before September 30, 1997

NT:Not typed

98


II-3. InfantsBased on the data received before September 30, 1997

NT:Not typed

99

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Table III. Isolation/detection of viruses from human sources, by sex of the source

case, Japan, 1996Based on the data received before September 30, 1997

NT:Not typed

100


Table IV. Isolation/detection of viruses from human sources, by source of

specimens, Japan, 1996Based on the data received before September 30, 1997

NT:Not typed

Including cases from which the same virus was isolated/detected from multiple specimens

101

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Table V. Isolation/detection of viruses from human sources, by clinical diagnosis

of the source case, Japan, 1996Based on the data received before September 30, 1997

NT:Not typed

*Reportable diseases under the National Epidemiological Surveillance of Infectious Diseases are listed

102


Table VI. Isolation/detection of viruses from human sources, by clinical condition

of the source case, Japan, 1996Based on the data received before September 30, 1997

NT:Not typed

Including cases for which multiple symptoms were reported

103

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Table VII. Isolationldetection of viruses from human sources, by method of

isolation, Japan, 1996Based on the data received before September 30, 1997

NT:Not typed

Including cases from which the same virus was isolated/detected by multiple methods

104


Table VIII. Isolation/detection of viruses

from human sources, by reason for

specimen collection, Japan, 1996Based on the data received before September 30, 1997

NT:Not typed

Including cases for which multiple answers were furnished

Table IX. Isolation/detection of viruses

from human sources, by institution,

Japan, 1996 Based on the data received before September 30, 1997

NT:Not typed

105

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Table X. Isolation/detection of viruses from human sources, by place of residence

of the source case, Japan, 1996


NT:Not typed

P. :prefecture C.:city M. metropolitan

106

Jpn. J. Med. Sci. Biol.1997

Table X. (Continued)


NT:Not typed

P. :prefecture C.:city M. metropolitan

107

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Table XI. Isolation/detection of viruses from human sources, by participating

laboratory, Japan, 1996

(The official name and code number of participating laboratories arc listed on pages 6-9)


NT:Not typed PPHI:prefectural public health institute

CPHI:municipal public health institute

MPHI:metropolitan public health institute

NHVRC:national hospital virus research center

CDL:commercial diagnostic laboratory

108


Table XI. (Continued)


NT:Not typed PPHI:prefectural public health institute

CPHI:municipal public health institute

MPHI:metropolitan public health institute

NHVRC:national hospital virus research center

CDL:conimercial diagnostic laboratory

109

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Table XII. Isolation of viruses from

nonhuman sources, by month,

Japan, 1996


Table XIV. Isolation of viruses from nonhuman sources, by method

of isolation, Japan, 1996


Table XVI. Isolation of viruses from

nonhuman sources, by participating

laboratory, Japan, 1996Based on the data received before

September 30, 1997

PPHI:prefecctur'al public health institute

(The official name and mde number of participating laboratories are listed on pages 6-9)

Table XIII. Isolation of viruses from

nonhuman sources, by source and

specimen, Japan, 1996


Table XV. Isolation of viruses from

nonhuman sources, by reason for

specimen collection, Japan, 1996


110


Table XVII. Isolation/detection of viruses from human sources, by year , Japan, 1991-1996


NT:Not typed

111

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Table XVII. (Continued)


NT:Not typed

112


Table XVIII. Isolation of viruses from nonhuman sources,

by year, Japan, 1991-1996


113

Documents

TABLES I. Reports on Isolation of Bacteria ... - JST