1
Computational Biology Leeds is a in Virtual Tissue Engineering Synchronization and bursting in a simple virtual gravid uterus S Kharche 1 , A V Holden 1 , S W Smye 2 , S Snowden 2 , N A B Simpson 3 , R H Clayton 4 , and J J Walker 5 1. Computational Biology Laboratory, School of Biomedical Sciences, University of Leeds; 2. Medical Physics, St. James’ University Hospital, Leeds; 3. Paediatrics and Obstetrics and Gynaecology Unit, Leeds General Infirmary; 4. Department of Computing, University of Sheffield; 5. University Dept of Obstetrics and Gynaecology, St James's University Hospital, Leeds. 1. Introduction The uterus increases in activity and synchrony during the final stages of pregnancy. We caricature electrical activity of the gravid uterus by a 2D excitable medium with FitzHugh Nagumo kinetics, and estimate a pseudo electro-hysterogram (EHG). The model given as following: where u and v are the voltage and current variables respectively, ' is differentiation with respect to time, and is differentiation with respect to space. The input current I, and diffusion coefficient D at each point in the medium are scalar parameters assigned a value around a given mean using a normal distribution with standard deviation of 0.15. 2. Methods 2D models of uterine tissue consisting of a 300 x 400 node Cartesian grid were constructed with a space step of 0.4 space units and a time step of 0.01 time units. The nonlinear partial differential equation (equation (1)) was solved using a simple forward step Euler method. The values of parameters in equation (1) were taken as k = 8, u a = 0.1, = 0.02, and G = 5. The parameter I controls excitation in the system and the parameter D controls the diffusive interaction of voltage produced by intercellular coupling. We investigate the change in behaviour of our 2D models as these 2 parameters change. We note activation and synchronization behaviour in each of these cases for values of I between 0 and 0.5 and for values of D between 0 and 0.5. We computed pseudo EHGs of the model with leads situated at a parallel plane and 30 space units above the model by methods given in [1], Acknowledgments: This work was supported by EPSRC grant number GR1R92592/01 3. Conclusions Simulation of simple spatial excitation models allows us to investigate the behaviour of media under conditions of increased excitation and intercellular coupling. Spatial heterogeneity is seen to assist transitions between quiescence, bursting, synchrony and quenched systems. A spatial heterogeneity in intercellular coupling on its own does not permit large scale synchronous behaviour within the parameter range investigated. Simultaneous heterogeneity in excitation and intercellular coupling however, increases the possibility of bursting. Increase in synchrony can be denoted by phase diagrams of EHGs obtained from spatially separate locations. Power spectral density methods are capable of quantifying the progress in pregnancy. The same methods also allow us to quantify changes in our simulations. Figure 2. A: Power spectral density in late pregnancy (red line) has a low frequency component (0.2-0.45 Hz band). In advanced late pregnancy (green line), in addition to this low frequency component a high frequency component (0.8-3 Hz band) is also observed [2]. The ratio of total power in low frequency band to high frequency band increased from 0.1 to 0.8. Data used are from a single representative case. B: Pseudo EHGs were analysed using the same methods applied to data in A. EHGs from simulations where I was irregular over space were obtained. EHG for low excitability and low intercellular coupling (I = 0.2, D = 0.2) show a peak at approximately 0.01 (red line). For high values (I = 0.5, D = 0.5), the peak shifted to a higher frequency of approximately 0.02 (green line). Total power is doubled as we go from I = 0.2, D = 0.2 to I = 0.5, D = 0.5. A Figure 1. Colour code in panels A: blue: small amplitude activity; green: bursting; red: moderate I but quenching due to high values of D; brown: high activity and high synchrony. Colour code in panels B: A RGB colour scheme where steady state (quiescence) is denoted by dark red and high amplitude activity is denoted by pale yellow. A B C intercellular coupling / D excitation / I 0 0 0 0.5 0.5 0.5 0.5 0.5 0.5 EHG 1 EHG 1 EHG 6 EHG 6 Frequency (Hz) Frequency ( cycles / time units) normalised p.s.d. normalised p.s.d. EHG 1 EHG 1 EHG 6 EHG 6 ) - ( ' ) , ( 1) - )( - ( ) , ( ' a v u G v y x I u u u u k u y x D u ε = + - = (1) 3. Results Regions in parameter space with different qualitative patterns of activity and synchrony were identified as shown in panels A of Figure 1. For low values of parameters I and D, activity was localised. The activity was asynchronous. As the values of I was increased, the amplitude of activity increased. With an increase in value of D, synchronous activity was observed. Synchrony was not observed in the case where only D was randomly distributed and I had a uniform value for all nodes. In the cases where I was irregularly distributed, high values of D suppressed bursting (quenching) for moderate values of I. Progress of the simulation was visualised by recording the distribution of u across the model at regular time intervals. Examples are shown in panels B of Figure 1. At low excitability and low intercellular coupling (I = 0.2, D = 0.2), no apparent synchrony is observed. Activity is also low and we either observe bursting, or quiescence. At high excitability and intercellular coupling (I = 0.5, D = 0.5), an appreciable degree of synchrony and activity are observed in the cases where I is irregularly distributed. Pseudo EHGs were used to investigate synchrony and activity in the system. Phase relations between 2 normalised pseudo EHGs from distinct spatial locations are displayed in panels C of Figure 1. Phase synchronization was expected as both I and D were increased, and correlation between phases of EHGs obtained from spatially distinct positions increases. In case where only D was irregularly distributed, the pseudo EHG had a very small amplitude. Simulated EHGs we compared to clinical data from [2] using power spectral density (p.s.d.) (Figure 2). In the clinical data there is a low frequency component which is present throughout late pregnancy. As pregnancy progresses, power of high frequency component increases. In our simulations, as I and D are increased a distinct shift in peak in the p.s.d. and an increase in total power is observed. 3 r u EHG r Σ - = (2) A: Parameter space plot of I vs D with parameter I irregularly distributed over the 2D model. B: Frames from simulation with values of I = 0.5, D = 0.5 (top) and I = 0.2, D = 0.2 (bottom) at time t = 5000 time units. C: Phase plots of normalised EHG from spatially distinct locations for parameter values corresponding to B. A excitation / I intercellular coupling / D B A: Parameter space plot of I vs D with parameter D irregularly distributed over the 2D model. B: Frames from simulation with values of I = 0.5, D = 0.5 (top) and I = 0.2, D = 0.2 (bottom) at time t = 5000 time units. Although a transition from quiescence to activity is observed, the oscillations are not strong. A B A: Parameter space plot of I vs D with both parameters I and D irregularly distributed over the 2D model. B: Frames from simulation with values of I = 0.5, D = 0.5 (top) and I = 0.2, D = 0.2 (bottom) at time t = 5000 time units. C: Phase plots of normalised EHG from spatially distinct locations for parameter values corresponding to B. excitation / I intercellular coupling / D B 4. References [1] Bioelectricity: A quantitative approach. Second edition by R Plonsey and R C Barr. Kluwer Academic/Plenum Publishers (2000). New York. [2] Snowden S et. al (2001) Physiol. Meas., 22(4), 673-679 C

Synchronization and bursting in a simple virtual gravid uterusstaff€¦ · [1] Bioelectricity: A quantitative approach. Second edition by R Plonsey and R C Barr. Kluwer Academic/Plenum

  • Upload
    others

  • View
    3

  • Download
    0

Embed Size (px)

Citation preview

Page 1: Synchronization and bursting in a simple virtual gravid uterusstaff€¦ · [1] Bioelectricity: A quantitative approach. Second edition by R Plonsey and R C Barr. Kluwer Academic/Plenum

Computational Biology Leeds is a

in Virtual Tissue Engineering

Synchronization and bursting in a simple virtual gravid uterusS Kharche1, A V Holden1, S W Smye2, S Snowden2, N A B Simpson3, R H Clayton4, and J J Walker5

1. Computational Biology Laboratory, School of Biomedical Sciences, University of Leeds; 2. Medical Physics, St. James’ University Hospital, Leeds; 3. Paediatrics and Obstetrics and Gynaecology Unit, Leeds General Infirmary; 4. Department of Computing, University of Sheffield; 5. University Dept of Obstetrics and Gynaecology, St James's University Hospital, Leeds.

1. Introduction

The uterus increases in activity and synchrony during the final stages of pregnancy. We caricature electrical activity of the gravid uterus by a 2D excitable medium with FitzHugh Nagumo kinetics, and estimate a pseudo electro-hysterogram (EHG). The model given as following:

where u and v are the voltage and current variables respectively, ' is differentiation with respect to time, and is differentiation with respect to space. The input current I, and diffusion coefficient D at each point in the medium are scalar parameters assigned a value around a given mean using a normal distribution with standard deviation of 0.15.

2. Methods

2D models of uterine tissue consisting of a 300 x 400 node Cartesian grid were constructed with a space step of 0.4 space units and a time step of 0.01 time units. The nonlinear partial differential equation (equation (1)) was solved using a simple forward step Euler method. The values of parameters in equation (1) were taken as k = 8, ua = 0.1, � = 0.02, and G = 5. The parameter I controls excitation in the system and the parameter D controls the diffusive interaction of voltage produced by intercellular coupling. We investigate the change in behaviour of our 2D models as these 2 parameters change. We note activation and synchronization behaviour in each of these cases for values of I between 0 and 0.5 and for values of D between 0 and 0.5. We computed pseudo EHGs of the model with leads situated at a parallel plane and 30 space units above the model by methods given in [1],

Acknowledgments: This work was supported by EPSRC grant number GR1R92592/01

3. Conclusions

Simulation of simple spatial excitation models allows us to investigate the behaviour of media under conditions of increased excitation and intercellular coupling. Spatial heterogeneity is seen to assist transitions between quiescence, bursting, synchrony and quenched systems. A spatial heterogeneity in intercellular coupling on its own does not permit large scale synchronous behaviour within the parameter range investigated. Simultaneous heterogeneity in excitation and intercellular coupling however, increases the possibility of bursting. Increase in synchrony can be denoted by phase diagrams of EHGs obtained from spatially separate locations. Power spectral density methods are capable of quantifying the progress in pregnancy. The same methods also allow us to quantify changes in our simulations.

Figure 2. A: Power spectral density in late pregnancy (red line) has a low frequency component (0.2-0.45 Hz band). In advanced late pregnancy (green line), in addition to this low frequency component a high frequency component (0.8-3 Hz band) is also observed [2]. The ratio of total power in low frequency band to high frequency band increased from 0.1 to 0.8. Data used are from a single representative case. B: Pseudo EHGs were analysed using the same methods applied to data in A. EHGs from simulations where I was irregular over space were obtained. EHG for low excitability and low intercellular coupling (I = 0.2, D = 0.2) show a peak at approximately 0.01 (red line). For high values (I = 0.5, D = 0.5), the peak shifted to a higher frequency of approximately0.02 (green line). Total power is doubled as we go from I = 0.2, D = 0.2 to I = 0.5, D = 0.5.

A

Figure 1. Colour code in panels A: blue: small amplitude activity; green: bursting; red: moderate I but quenching due to high values of D; brown: high activity and high synchrony. Colour code in panels B: A RGB colour scheme where steady state (quiescence) is denoted by dark red and high amplitude activity is denoted by pale yellow.

A B C

intercellular coupling / D

exci

tatio

n /I

0

0

0

0.5

0.5

0.5

0.5

0.5

0.5

EH

G 1

EH

G 1

EHG 6

EHG 6

Frequency (Hz)

Frequency ( cycles / time units)

norm

alis

ed p

.s.d

.no

rmal

ised

p.s

.d.

EH

G 1

EH

G 1

EHG 6

EHG 6

) - ( '),( 1) - )( - ( ),(' a

vuGv

yxIuuuukuyxDu

ε=+−∇∇=

(1)

3. Results

Regions in parameter space with different qualitative patterns of activity and synchrony were identified as shown in panels A of Figure 1. For low values of parameters I and D, activity was localised. The activity was asynchronous. As the values of I was increased, the amplitude of activity increased. With an increase in value of D, synchronous activity was observed. Synchrony was not observed in the case where only D was randomly distributed and I had a uniform value for all nodes. In the cases where I was irregularly distributed, high values of D suppressed bursting (quenching) for moderate values of I.

Progress of the simulation was visualised by recording the distribution of u across the model at regular time intervals. Examples are shown in panels B of Figure 1. At low excitability and low intercellular coupling (I = 0.2, D = 0.2), no apparent synchrony is observed. Activity is also low and we either observe bursting, or quiescence. At high excitability and intercellular coupling (I = 0.5, D = 0.5), an appreciable degree of synchrony and activity are observed in the cases where I is irregularly distributed.

Pseudo EHGs were used to investigate synchrony and activity in the system. Phase relations between 2 normalised pseudo EHGs from distinct spatial locations are displayed in panels C of Figure 1. Phase synchronization was expected as both I and Dwere increased, and correlation between phases of EHGs obtained from spatially distinct positions increases. In case where only D was irregularly distributed, the pseudo EHG had a very small amplitude.

Simulated EHGs we compared to clinical data from [2] using power spectral density (p.s.d.) (Figure 2). In the clinical data there is a low frequency component which is present throughout late pregnancy. As pregnancy progresses, power of high frequency component increases. In our simulations, as I and D are increased a distinct shift in peak in the p.s.d. and an increase in total power is observed.

3ru

EHGr⋅∇Σ−= (2)

A: Parameter space plot of I vs D with parameter I irregularly distributed over the 2D model. B: Frames from simulation with values of I = 0.5, D = 0.5 (top) and I = 0.2, D = 0.2 (bottom) at time t = 5000 time units. C:Phase plots of normalised EHG from spatially distinct locations for parameter values corresponding to B.

Aex

cita

tion

/I

intercellular coupling / D

B

A: Parameter space plot of I vs D with parameter D irregularly distributed over the 2D model. B: Frames from simulation with values of I = 0.5, D = 0.5 (top) and I = 0.2, D = 0.2 (bottom) at time t = 5000 time units. Although a transition from quiescence to activity is observed, the oscillations are not strong.

A B

A: Parameter space plot of I vs D with both parameters I and D irregularly distributed over the 2D model. B:Frames from simulation with values of I = 0.5, D = 0.5 (top) and I = 0.2, D = 0.2 (bottom) at time t = 5000 time units. C: Phase plots of normalised EHG from spatially distinct locations for parameter values corresponding to B.

exci

tatio

n /I

intercellular coupling / D

B

4. References

[1] Bioelectricity: A quantitative approach. Second edition by R Plonsey and R C Barr. Kluwer Academic/Plenum Publishers (2000). New York.

[2] Snowden S et. al (2001) Physiol. Meas., 22(4), 673-679

C