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TrendsBecause many of the roles assumedby protein glycosylation in eukaryotesare not applicable to Bacteria orArchaea, this postmodification likelyserves distinct roles in prokaryotes.
In Bacteria, protein glycosylation sys-tems are found in nonpathogenic spe-cies, pointing to roles beyondvirulence.
In Bacteria and Archaea, protein gly-
ReviewSweet New Roles for ProteinGlycosylation in ProkaryotesJerry Eichler1,* and Michael Koomey2
Long-held to be a post-translational modification unique to Eukarya, it is nowclear that both Bacteria and Archaea also perform protein glycosylation,namely the covalent attachment of mono- to polysaccharides to specific pro-tein targets. At the same time, many of the roles assigned to this protein-processing event in eukaryotes, such as guiding protein folding/quality control,intracellular trafficking, dictating cellular recognition events and others, do notapply or are even irrelevant to prokaryotes. As such, protein glycosylation mustserve novel functions in Bacteria and Archaea. Recent efforts have begun toelucidate some of these prokaryote-specific roles, which are addressed in thisreview.
cosylation contributes to the integrityand proper architecture of glycopro-tein-containing assemblies.
Changes in protein glycosylation offersprokaryotes a rapid and reversiblemanner in which to respond to envir-onmental changes.
1Department of Life Sciences, BenGurion University of the Negev,Beersheva 84105, Israel2Department of Biosciences,University of Oslo, 0316 Oslo, Norway
*Correspondence:[email protected] (J. Eichler).
Prokaryotic Protein Glycosylation – Understanding the How but Not the WhyAs the list of completed genome sequences keeps growing, it is becoming increasingly clearthat the number of protein-coding genes cannot alone account for the size of an organism’sproteome. Sources of proteomic expansion include the various post-translational modifi-cations (see Glossary) a given protein can undergo. Of the various protein-processing eventsthat have been described, glycosylation, namely the covalent linkage of mono- to polysac-charides, is one of the most prevalent and probably the most complex (Box 1) [1,2]. Longthought to be restricted to Eukarya, it is now accepted that both Bacteria and Archaea also arecapable of N-glycosylation, where glycans are amide-bonded to select Asn residues of atarget protein, as well as O-glycosylation, where glycans are added to hydroxyl-presentingamino acids, particularly Ser and Thr [3–6] (Table 1). Despite the fact that numerous glyco-proteins have been identified in Bacteria and Archaea [7,8], that the structures of many of theglycans decorating prokaryal glycoproteins have been solved [9–13], and that considerableprogress has been made in delineating pathways of protein glycosylation in several bacterialand archaeal species [6,14,15], the roles served by the bacterial and archaeal versions of thisuniversal post-translational modification remain poorly defined.
In Eukarya, numerous functions have been assigned to protein glycosylation. The glycosylationprocess begins in the endoplasmic reticulum, the first stop on the secretory pathway, where alipid-bound polysaccharide core is transferred to target protein Asn residues. The N-linkedglycan is then augmented by individual sugars, also transferred from lipid carriers, to yield acomplex branched oligosaccharide [16–18]. The composition of the N-linked glycan dictatesinteractions of the modified protein with molecular chaperones, such as calnexin and calre-ticulin, and other enzymes that accommodate proper protein folding [19,20]. Indeed, thermo-dynamics-based studies have demonstrated the importance of protein glycosylation for proteinfolding [21,22]. At the same time, the same N-linked glycan structure is monitored by thequality-control system responsible for identifying aberrantly folded proteins and targeting themfor degradation, if necessary [23–25]. Once an N-glycosylated protein has successfully navi-gated the coordinated protein folding and quality control steps, it may be delivered to the Golgi,the next station along the secretory pathway, via a sorting process that can also rely on N-linked
662 Trends in Microbiology, August 2017, Vol. 25, No. 8 http://dx.doi.org/10.1016/j.tim.2017.03.001
© 2017 Elsevier Ltd. All rights reserved.
GlossaryArchaellum: the motility structure ofArchaea, functionally equivalent tothe bacterial flagellum.Autotransporters: found in a broadrange of Gram-negative bacteria,autotransporters comprise a family ofouter membrane or secreted proteinsthat facilitate their own transport tothe cell surface. In such proteins, theautotransporter domain, comprisingthe C-terminal portion of the protein,forms a beta-barrel structure in theouter membrane through which theN-terminal domain is presented onthe cell surface. Autotransporters areassociated with virulence,contributing to adhesion,aggregation, invasion, biofilmformation, and toxicity.N-glycosylation: the covalentlinkage of glycans to select Asnresidues in a target protein throughan amide bond.O-glycosylation: the covalentlinkage of glycans to hydroxyl-presenting amino acids, particularlySer and Thr.Oligosaccharyltransferase:oligosaccharyltransferases catalyzethe transfer of glycans from the lipidcarriers upon which they areassembled onto selected residues inglycoproteins. In Bacteria, Archaea,and lower eukaryotes, theoligosaccharyltransferase acts alone,whereas in higher Eukarya, theenzyme exists as a multimericcomplex.Post-translation modification: anevent that follows translation,designed to create variants of agiven protein through the covalentattachment of one or more of severalclasses of molecules (e.g., sugars,lipids, or small chemical groups, likeacetyl or methyl groups), theformation of intra- or intermolecularlinkages (e.g., disulfide bonds),proteolytic cleavage (e.g., signalpeptide removal), and/or anycombination thereof.Sequon: sequence motifs in apolypeptide denoting sites whereglycans are attached. In N-glycosylation, the Asn of a sequon,namely an Asn-Xaa-Ser/Thrsequence, where Xaa is any residuebut Pro, is modified. Variations to thecanonical sequon have beenobserved in prokaryotes. Thesequons processed in O-glycosylation are less well defined.
Box 1. Glycosylation As a Source of Protein Diversity
Of the different post-translation modifications to which a given protein can be subjected, glycosylation introduces themost diversity. Several factors are responsible for the enormous variability associated with protein glycosylation. Inaddition to the variability derived from how a glycan is linked to a protein (e.g., N-linked or O-linked), considerablediversity is generated at the level of individual sugars comprising protein-linked glycans. For instance, the incorporationof sugars that differ in the number of backbone carbons (e.g., pentoses and hexoses), that can exist in different epimericforms (e.g., glucose, mannose and galactose), and that can be distinguished via the addition of different chemicalgroups (e.g., amino or methyl groups) all contribute to glycan diversity. Further variablity arises when sugars start tooligomerize into a glycan due to the many possible linkages between any two sugars (in terms of both the position andstereochemistry of the connection), the possibility for branching, and the heterogeneity possible in a given oligosac-charide. Indeed, the variability of protein-linked glycans may be infinite because of the fact that no template limiting thesize of an oligosaccharide seems to exist. Together, these considerations result in a plethora of protein-linked glycansunique in composition and/or architecture.
glycan composition [26,27]. Once in the Golgi, the N-linked glycan is subjected to furtherprocessing through the addition and/or removal of constituent sugars to yield a range of N-linked oligosaccharides [28–30]. The Golgi is also the site of O-glycosylation, a second majorprotein glycosylation event that can also introduce considerable diversity into the glycosylationprofile of a glycoprotein [31,32]. In functional terms, the heterogeneity in glycan contentgenerated in the Golgi can be exploited for targeting different glycoproteins to distinct subcel-lular compartments [33,34] or, in the case of cell-surface-exposed glycoproteins, can contrib-ute to various cell–cell or other recognition events important for the development,differentiation, or physiology of a particular cell, tissue, or organism [35–38]. Such hetereo-geneity can, moreover, reflect different diseased states [39–42].
At the same time, it would appear that many of the roles assumed by protein glycosylation ineukaryotes are not relevant for prokaryotes. For instance, whereas protein folding and N-glycosylation are linked in the eukaryal secretory pathway, these processes occur on either sideof the plasma membrane in the case of bacterial and archaeal proteins secreted by the twinarginine translocation pathway. Here, such proteins fold in the cytoplasm [43,44], whileoligosaccharyltransferase-based N-glycosylation transpires on the outer surface of thebacterial and archaeal cell [45,46] (as do some versions of bacterial O-glycosylation [47]).Likewise, the need to sort proteins to distinct subcellular compartments is extremely limitedin prokaryotes. Finally, the number of recognition events required by a prokaryotic cell is likely tobe far less than its eukaryal counterpart. Therefore, Bacteria and Archaea must rely on proteinglycosylation for other purposes than how this post-translational modification is used in Eukarya(Figure 1, Key Figure). In this review, recent works addressing these roles are discussed.
Bacterial Protein Glycosylation – Not for Virulence AloneThe number of bacterial protein glycosylation systems recognized continues to grow. Thisprocess has been fueled in part by a few serendipitous discoveries followed by comparativegenomics that allows one to immediately see how broadly distributed protein glycosylationsystems (and genes) truly are. The take-home messages here are that (i) bacterial proteinglycosylation is much more prevalent than one could have imagined, and (ii) it is not strictlyassociated with pathogenic species. There are thus a number of outstanding questions relatingto the biological significance of bacterial protein glycosylation that are emphasized here.
In studying protein glycosylation in Bacteria, the predominant emphasis has been placed onpathogens. However, systems related to those found in pathogens abound in commensal andenvironmental isolates. Thus, bacterial protein glycosylation is not a canonical virulence factoras defined by the criteria established by Falkow [48]. Nonetheless, clear defects in colonizationand virulence in mammalian, insect, and plant model systems are seen for glycosylation nullmutants. This is particularly true of so-called dedicated systems in which the glycosylation
Trends in Microbiology, August 2017, Vol. 25, No. 8 663
S-layer: part of the cell envelope,the surface layer is a self-assemblingtwo-dimensional pseudocrystallinearray that covers the entire outersurface of the cell. Comprising asingle or a very small number ofproteins or glycoproteins, the S-layeris ubiquitous in Archaea and iscommon in Bacteria.
Table 1. N- and O-glycosylation in Eukarya, Bacteria, and Archaea
Eukarya Bacteria Archaea
N-glycosylation
Essential Yes No Some species
Distribution Universal Limited Almost universal
Glycan diversity Common core Limited Extensive
Glycan lipid carrier Dolichol phosphate,dolichol pyrophosphate
Undecaprenolpyrophosphate
Dolichol phosphate, dolicholpyrophosphate
Oligosaccharyltranferase
Number of subunits Single ormultiple
Single Single
Catalytic subunit STT3 PglB AglB
Processing of protein-bound glycan
Yes No Yes
Different glycans onsame protein
No No Yes
O-glycosylation
Distribution Universal Some species Unknown
Glycan diversity Extensive Extensive Limited
Transfer of assembledglycan from lipid carrier
No Possible Unknown
Processing of protein-bound glycan
Yes No Unknown
machineries target a specific protein. These most often involve major surface-localized entities,such as flagella, autotransporters, and type IV pili.
Bacterial flagella come in both O-glycosylated and non-glycosylated forms [49]. In those caseswhere flagellin subunits undergo modification, null glycosylation mutants show a remarkablearray of disparate phenotypes. In Helicobacter, Campylobacter, and Aeromonas, as well asGram-positive Clostridia and Listeria, glycosylation-null mutants are nonflagellated and displayfla� phenotypes [50–54]. In contrast, such mutants in Pseudomonas and Burkholderia retainflagella and motility [55,56]. A breakthrough in understanding how flagellin glycosylation mightexert its influence on filament assembly came from studies in Aeromonas caviae. Using amutant lacking the Maf1 glycosyltransferase required for the transfer of pseudaminic acid toflagellin, Parker and colleagues established that glycosylation is dispensable for subunit exportbut is essential for filament assembly, since nonglycosylated flagellin is still secreted [57].Flagellin glycosylation in a chaperone mutant (flaJ) showed that glycosylation takes place in thecytoplasm (as long surmised but never previously documented) and before chaperone bindingand protein secretion. It was further shown that FlaJ preferentially bound glycosylated flagellin.It will be interesting and important to see if such findings can be extended to encompass theother flagellar glycosylation systems.
Bacterial autotransporters, adhesins of Gram-negative bacteria defined by shared structuralelements and surface localization mechanisms, also come in both glycosylated and non-glycosylated flavors. O-glycosylated autotransporters are modified with heptoses at multiplesites within the passenger domain via the action of cytoplasmic heptosyltransferases usingADP-heptose [58]. Three such adhesins have been characterized in Escherichia coli, namelyAIDA-1, Ag43, and TibA. Surprisingly, glycosylation null mutants have different effects onotherwise shared phenotypes but no major quantitative effects on secretion or surface
664 Trends in Microbiology, August 2017, Vol. 25, No. 8
Key Figure
Protein Glycosylation Serves Distinct Roles in Eukarya and in Bacteriaand Archaea
BacteriaArchaea
Eukarya
Protein foldingandquality control
Differen�alsubcellulartarge�ng
Cell–celland other
recogni�onevents
Assembly and strength of glycoprotein-based structures
Remodeling in response toenvironmental
changes
Virulence,host–microbe
interac�ons
Protein glycosyla�onProtein glycosyla�on
Figure 1. Given differences in the temporal relationship and location of protein glycosylation, in the structure of the cell, ininteractions with biological molecules or other cells, and in lifestyle, eukaryotes and prokaryotes (Bacteria and Archaea) relyon protein glycosylation for distinct purposes.
localization. Such mutants in the Ag43 system were found to be defective in associatedfunctions, such as adherence and autoagglutination, yet showed enhanced binding to ele-ments of the extracellular matrix [59]. In contrast, heptosyltransferase null mutants in the TibAsystem were altered solely in adherence phenotype [60]. These findings are consistant withothers, revealing how poorly understood the structure–function relationships of autotransport-ers are with regard to their different phenotypes. The recent, highly resolved structure of aglycosylated 300 residue-long TibA peptide represents a major advance in this arena [61]. Thatsame study also defined a unique family of structural autotransporter heptosyltransferases anddetermined their structure. Another breakthrough in this field was the identification of an entirelydifferent class of heptosyltransferases mediating N-linked glycosylation of a subset of auto-transporters in species including Actinobacillus, Kingella, and Aggregatibacter [62,63]. Here, thecytosolic N-glycosyltransferase utilizes nucleotide-activated monosaccharides to modify aspar-agine residues with a relaxed consensus sequon. These enzymes are related to HMW1C that N-glycosylates adhesins in Haemophilus influenzae [64,65]. Null mutants for the glycosyltransferaseare functionally defective for autotransporter function, as are the equivalent mutants in the O-linked systems. However, it remains unclear whether these phenotypes result from reducedfunction per se, as opposed to a reduction in surface localization. It is remarkable that despite thefact that the Aggregatibacter aphrophilus autotransporter is almost identical to that in Aggre-gatibacter actinomycetemcomitans, the former is N-glycosylated while the latter is O-glycosy-lated in a process involving enzymes used in the biosynthesis of the O-polysaccharide oflipopolysaccharide, including the WaaL-type O-antigen ligase [66]. Moreover, an HMW1C-likeN-glycosyltransferase is not readily identifiable in the A. actinomycetemcomitans genome.
N- and O-linked broad-spectrum (aka general) protein glycosylation systems encompass thosethat modify a large number of extracytoplasmically targeted substrates and are exemplified bythe N-linked system of Campylobacter jejuni and the O-linked systems of pathogenic Neisseriasp. and Mycobacterium tuberculosis, respectively. In C. jejuni, substrates are modified with en
Trends in Microbiology, August 2017, Vol. 25, No. 8 665
bloc transferred oligosaccharides by an oligosaccharyltransferase structurally related to theSTT3 subunit of the eukaryotic oligosaccharyltransferase complex [67,68]. The Neisseria sp.system involves the en bloc transfer of oligosaccharides by an oligosaccharyltransferasestructurally related to the WaaL family of O-antigen ligases [15,69], while the mycobacterialsystems rely on the transfer of mannose from polyprenol carriers by protein mannosyltransfer-ases related to their eukaryotic counterparts [70,71]. Despite their differences, a number ofshared themes connect these systems. First, membrane-linked protein substrates (lipoproteinsor proteins bearing membrane-spanning domains) are over-represented in all three. Likewise,the vast majority of glycoproteins in each are not predicted to be surface-exposed. In the C. jejuniand Neisseria systems, each utilizes a di-N-acetyl-bacillosamine sugar at the reducing end of theglycan that is synthesized and transferred to undecaprenylphosphate by a conserved andevolutionarily related set of components [72,73]. Although the Neisseria and mycobacterialsystems do not utilize classical targeting sequons, the sites of modified Ser and Thr residuesin each lie within interdomain regions of reduced complexity enriched in proline, as well asthreonine and serine residues. Taken together, these systems exemplify how amalgamationsof related components connect, which otherwise are perceived as being highly unrelated.
Broad-spectrum systems have also been identified in Acinetobacter and Burkholderia viabioinformatics, and each of these also encompass glycosylation of the pilin subunit proteinof the type IV pilus colonization factor [74,75]. Again, mutants defective in glycosylation areattenuated in infection models for both. It should be noted as a matter of curiosity that an activeprotein-targeting oligosaccharyltransferase (VC0393) has been identified in Vibrio cholerae thatO-glycosylates target proteins from Neisseria when coexpressed in Escherichia coli [76].However, protein glycosylation has yet to be observed in V. cholerae. In addition, a forwardgenetic screen using Tn-seq showed no fitness alterations during infection, dissemination, orsurvival in the aquatic environment for the VC0393 null mutant [77]. Future work needs toresolve the status of a potential V. cholerae protein O-glycosylation system.
Nearly all of these systems are associated with pathogens, and glycosylation null mutants havebeen seen to be colonization-defective or of reduced virulence in host model systems (oftenwhile showing few, if any, in vitro phenotypes) [74,78–81]. Understanding the mechanismsbehind these attenuated phenotypes is complicated by the large number of proteins lackingglycosylation. Thus, it remains unclear whether these phenotypes are the result of the non-glycosylation of a single protein or the cumulative effects of multiple protein perturbations.
As noted earlier, similar glycosylation systems are found in related commensal and environ-mental species in each of the above cases. The unique general O-linked system documented inBacteroides fragilis is particularly interesting as this species is considered to be an importantmember of the healthy gut microbiota [82]. Mutants with altered glycan structures were unableto compete with wild-type organisms in gut colonization. In addition, this seems to be uniqueamong broad-spectrum O-glycosylation systems in its use of a sequon-like element. Althoughthe oligosaccharyltransferase has yet to be defined in this system, the basic structure of theglycoforms (and some of the biosynthetic machinery), as well as a defined glycoproteome, hasbeen established.
Little attention is placed here on the detailed synthetic pathways and precise structures of theglycans/oligosaccharides themselves. Needless to say, there is an enormous amount ofdiversity to be found. That said, one can ask why specific glycoforms are associated withspecific systems. Might they be driven by forces of the innate and/or adaptive immunesystems? Or are they shaped by mere metabolic considerations relating to the costs ofsynthesizing certain oligosaccharides or conflicts with coexpressed glycoconjugate synthesispathways? In some cases, the systems merely tap into or co-opt a pre-existing pathway for
666 Trends in Microbiology, August 2017, Vol. 25, No. 8
lipopolysaccharide or capsular polysaccharide biosynthesis. It is conceivable that such glycansmight mimic host glycan structure and thus perturb or ameliorate immune recognition or, moregenerally, merely mask elements that might otherwise elicit immune responses [83]. In somebacteria, glycoform structure is very stable, while in others there are significant degrees of intra-and interstrain diversity. This situation is perhaps exemplified by the related C. jejuni andpathogenic Neisseria broad-spectrum systems. The former utilizes an incredibly conservedheptasaccharide, while the latter employs an array of glycoforms that can be expressed by asingle strain. Why is the system so constrained in the case of the former and so deconstrainedin the latter? Likewise, some flagellin systems are very static while in others, such as those ofHelicobacter, Campylobacter, and Clostridium species, large genomic islands associated withdramatic glycoform variability are found. With regard to the adaptive immune response, it isnotable that only few studies have examined antibody responses to protein-associated glycansor the effects of glycan-specific antibodies. This is surprising, first as it is well established thatconjugating oligosaccharides to a protein results in transforming such oligosaccharides into T-cell-dependent antigens, underlying a robust antibody response. Second, many glycoengin-eering endeavors are predicated on exploiting bacterial protein glycosylation systems toproduce vaccines targeting bacterial glycoconjugates (Box 2). Two recent works suggest thatglycan-specific antibodies may have significant biological activities. Of note, Pluschke andcolleagues identified a Bacillus anthracis lineage lacking expression of the spore surface-linkedoligosaccharide and suggested that this could be the result of prior immunization of cattle with avaccine based on oligosaccharide-positive spores [84]. More directly, Szymanski et al. reportedthat immunization with glycoconjugates bearing the C. jejuni N-linked heptasaccharide led to a10-log reduction in colonization of chickens, in association with the elicitation of glycan-directed antibodies [85]. Thus, while considerable progress has been made, there is still muchrelated to the roles played by protein glycosylation in Bacteria that remains to be elucidated.
Archaeal N-Glycosylation – Reasons to Sweeten at ExtremesLike Bacteria, Archaea are also capable of both N- and O-glycosylation [6,86]. Yet, whereas N-glycosylation is currently restricted to delta/epsilon proteobacteria [5], it seems to be an almostuniversal process in Archaea [87]. Because of this, and since only three examples of archaealO-glycosylation have been reported [88–90], the bulk of research into protein glycosylation inArchaea has focused on N-glycosylation. Such efforts have not only revealed novel aspects ofthis universal post-translational modification but have also provided insight into what purpose itserves in Archaea.
Having provided the first example of a non-eukaryal glycoprotein [88], halophilic (salt-loving)archaea have long served as models of choice for understanding N-glycosylation in Archaea.As such, not only are halophiles central to research aimed at defining archaeal N-glycosylation
Box 2. Glycoengineering with Bacteria: Escherichia coli As a Glycofactory
With the description of a pathway for N-glycosylation in Campylobacter jejuni [14], efforts subsequently focused onintroducing the ability to glycosylate proteins into E. coli, a bacterial workhorse of biotechnology. Accordingly, E. colitransformed with the gene cluster encoding components of the C. jejuni N-glycosylation pathway was able toglycosylate recombinant C. jejuni glycoproteins, as well as proteins into which a sequence recognized by the N-glycosylation machinery was inserted [68,117]. It was also reported that similar N-glycosylation was performed by E. coliexpressing the C. jejuni oligosaccharyltransferase PglB and enzymes involved in the assembly of different O-poly-saccharides, components of the lipopolysaccharide surrounding Gram-negative bacteria, demonstrating that variabilityof the glycan added to target proteins in engineered E. coli was possible [118]. More recently, efforts have focused ongenerating E. coli strains capable of producing glycoproteins bearing human N-linked glycans. In such efforts, genesencoding yeast enzymes common to the yeast and human N-glycosylation pathways have been introduced into E. colicells expressing C. jejuni PglB, yielding proteins bearing the core N-linked glycan of eukaryotic glycoproteins [119].Although much remains to be done before E. coli can serve as host cell for economically viable glycoprotein production,considerable efforts are being directed at optimizing glycosylation efficiency and glycoprotein yield, as well ashumanizing the added glycans.
Trends in Microbiology, August 2017, Vol. 25, No. 8 667
pathways [6], they have also helped elucidate the reasons for this post-translational modifica-tion. At present, these efforts have largely focused on three haloarchaeal glycoproteins, namelysurface (S)-layer glycoproteins that comprises the S-layer surrounding such cells, archaellins,the building blocks of the archaellum (corresponding to the archaeal counterparts of bacteriaflagellins and flagella, respectively), and pilins, the basic subunit of pili, another surfaceappendage found in haloarchaea [91–95]. Such studies have revealed that N-glycosylationis important for the integrity and strength of the structures assembled from these glycoproteins.In some of the earliest studies on archaeal N-glycosylation, it was shown that treatingHalobacterium salinarum with bacitracin, a compound known to interfere with other glycosyla-tion systems, not only affected S-layer glycoprotein mass but also converted these normallyrod-like cells into spheres [96]. More recently, it was shown that interfering with properHaloferax volcanii N-glycosylation through the deletion of genes encoding proteins involvedin this post-translational event rendered the S-layer more susceptible to proteolytic degradationor more readily released to the surrounding medium, apparently due to under-glycosylation ofthe S-layer glycoprotein [97–102]. The importance of N-glycosylation for Hfx. volcanii S-layerintegrity was further shown with membrane vesicles prepared from cells deleted of N-glyco-sylation pathway genes; such vesicles presented only partially intact S-layers [102]. Moreover, itwas reported that truncation of the pentasaccharide N-linked to the Hfx. volcanii S-layerglycoprotein resulted in reduced secretion of a reporter protein to the growth medium,presumably due to effects on the assembly or architecture of the S-layer [102] (Figure 2).
N-g
lyco
syla
�on
mut
ants
Plasma membranePlasma membrane
S-layerS-layer
Enhancedsensi�vity toadded protease
Increasedrelease intothe growthmedium
Loss of integrityupon vesicleforma�on
Decreased protein exportto the medium
Pare
nt
Figure 2. Compromised N-Glycosylation Has a Detrimental Effect on the Hfx. volcanii S-Layer. The Hfx.volcanii S-layer surrounding the cell comprises a single protein, the S-layer glycoprotein (schematically depicted in the toppanel, Parent strain). In mutants where N-glycosylation is perturbed by deletion of genes involved in the process, the S-layer shows increased sensitivity to added protease (second panel; [98–102]), is more readily released into the growthmedium (third panel; [97]), loses its integrity when right-side-out membrane vesicles are prepared (fourth panel; [102]), andinterferes with the export of protein to the growth medium (bottom panel; [102]).
668 Trends in Microbiology, August 2017, Vol. 25, No. 8
Outstanding QuestionsWhat additional roles does protein gly-cosylation serve in prokaryotes? Doeukaryotes also rely on protein glyco-sylation for purposes now seeminglyunique to prokaryotes?
Why are there so many different bac-terial protein glycosylation systems?Do the innate and/or adaptive immunesystems provide the driving force orare metabolic considerations relatingto the costs of synthesizing certainoligosaccharides responsible?
How widespread is the use of modifiedN-glycosylation as a response to envi-ronmental change in Archaea? Howdoes modified N-glycosylation contrib-ute to the ability of Archaea to adapt toenvironmental changes? Do Bacteriaalso modify protein glycosylation inresponse to changing surroundings?Does O-glycosylation change in theface of shifting environments?
How can prokaryotic protein glycosyl-ation be exploited for appliedpurposes?
Compromised N-glycosylation also led to defects in the assembly of archaella and pili in Hfx.volcanii, as well as losses of motility and adhesion, demonstrating the functional importance ofproper archaellin and pillin N-glycosylation, respectively [95,103].
The importance of archaellin N-glycosylation for archaellum assembly and motility was likewisedemonstrated in the methanogenic archaea Methanococcus voltae [104] and Methanococcusmaripaludis [105]. In the thermoacidophile Sulfolobus acidocaldarius, compromised N-glyco-sylation did not affect archaellum assembly, structure or stability, yet did compromise motility[106,107]. Disrupted N-glycosylation also interfered with proper S. acidocaldarius S-layerstructure [107]. Moreover, perturbed N-glycosylation substantially decreased S. acidocaldariusgrowth rates as the salinity of the surrounding medium increased [106,108]. It is noteworthythat in S. acidocaldarius, a species belonging to the major archaeal phylum Crenarchaeota, N-glycosylation is essential for survival [109], whereas this is not the case in Euryarchaeota, asecond major archaeal phylum that includes the halophiles and methanogens discussed above[104,110].
More striking than the contribution of N-glycosylation to the architecture, integrity, and functionof glycoprotein-based structures is the apparent involvement of this protein-processing event inarchaeal responses to changing environments. Although many Archaea are denizens of‘extreme’ surroundings, they too can experience environment-related stress, as conditionsin such habitats may not remain static. Post-translational modifications, including proteinglycosylation, provide a rapid and reversible response to such environmental changes. InHfx. volcanii, the S-layer glycoprotein is modified by an N-linked pentasaccharide [13]. How-ever, when the salinity of the growth medium dropped below a certain threshold, both dolicholphosphate, the lipid upon which N-linked glycans are assembled in Hfx. volcanii, and S-layerglycoprotein Asn-498, a position not modified when the cells are grown at higher salinity, weremodified by a tetrasaccharide of novel composition [111–113]. Moreover, if assembly of thepentasaccharide was compromised, the so-called ‘low salt’ tetrasaccharide was added toAsn-498 even under high-salt conditions, indicative of the coordinated behavior of the two N-glycosylation pathways in this organism. In other studies, it was reported that the N-glycosyla-tion profile of M. maripaludis archaellins was modified when the growth temperature exceededa certain threshold [114]. Whereas the archaellin FlaB is normally modified by a tetrasaccharideat its four N-glycosylation sites, in cells grown at temperatures �38�C, this protein was insteadmodified by only the first three sugars, with sugar three lacking the attached Thr residue andacetamidino group seen at this position at lower temperatures. It was further confirmed that theappearance of the truncated N-linked glycan was not the result of tetrasaccharide degradationat the elevated growth temperature. These results suggest that modulating the N-glycosylationpattern of proteins that undergo such post-translational modification somehow helps Archaeaadapt to changes in the environment. It remains, however, to be determined just how modifiedN-glycosylation contributes to such adaptability. With this in mind, it is worth noting that in Hbt.salinarum, the transcription factor TrmB regulates the expression of metabolic enzymes,including those involved in the production of sugars used in protein glycosylation, in responseto glucose levels [115]. In summary, novel uses for protein glycosylation by Archaea may reflectyet another creative solution these organisms employ to cope with the extreme environments inwhich they are often found.
Concluding RemarksProtein glycosylation is of undoubtable biological significance in a variety of prokaryotes.However, current studies into protein glycosylation clearly represent only the tip of an icebergand can be considered as having addressed the ‘low hanging fruit'. As seen by mutant analysesin Bacteria, the phenotypes are all over the map and in a number of cases, lack coherence. InArchaea, the limited number of species amenable to experimental manipulation represents an
Trends in Microbiology, August 2017, Vol. 25, No. 8 669
obstacle to the drawing of general conclusions. As such, although evidence for new andseemingly prokaryote-specific roles for protein glycosylation is starting to accumulate, itremains a challenge to define precise functions for this post-translational modification in suchorganisms (see Outstanding Questions). This is not new. In 1993, Varki summarized thepotential biological significance of oligosaccharides with the conclusion that “all of the theoriesare correct” [116]. When one includes prokaryotic protein glycosylation into the equation, thisconclusion may be more true now than ever.
AcknowledgmentsJ.E. was supported by grants from the Israel Science Foundation (ISF) (grant 109/16), the ISF within the ISF-UGC joint
research program framework (grant 2253/15), the ISF-NSFC joint research program (grant 2193/16) and the German-
Israeli Foundation for Scientific Research and Development (grant I-1290-416.13/2015). M.K. was supported in part by
Research Council of Norway (RCN) project 214442, as well as the Centre for Integrative Microbial Evolution at the
Department of Biosciences, University of Oslo.
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