SUPPLEMENTARY METHODSclincancerres.aacrjournals.org/content/suppl/2009/03/13/1078-0432.… · SUPPLEMENTARY METHODS 1) Characterisation of OCCC cell line gene expression profiles

SUPPLEMENTARY METHODS

1) Characterisation of OCCC cell line gene expression profiles using Prediction Analysis for

Microarrays (PAM)

The ovarian cancer dataset from Hendrix et al (25) was used to predict the phenotypes of the cell lines

used in this study. Hendrix et al (25) analysed a series of 103 ovarian samples using the Affymetrix

U133A array platform (GEO: GSE6008). This dataset comprises clear cell (n=8), endometrioid (n=37),

mucinous (n=13) and serous epithelial (n=41) primary ovarian carcinomas and samples from 4 normal

ovaries.

To build the predictor, the Prediction Analysis of Microarrays (PAM) package in R environment was

employed (http://rss.acs.unt.edu/Rdoc/library/pamr/html/00Index.html). When more than one probe

described the expression of a given gene, we used the probe with the highest median absolute

deviation across the samples. The dataset from Hendrix et al. (25) and the dataset of OCCC cell lines

described in this manuscript were then overlaid on the basis of 11536 common unique HGNC gene

symbols. Only the 99 primary ovarian cancers samples and the four normal ovary samples were used

to build the predictor. Following leave one out cross-validation, a predictor based upon 126 genes was

able to identify correctly the four distinct phenotypes of primary ovarian tumour samples with a

misclassification rate of 18.3%. This predictor was subsequently applied to the expression data from

the 12 OCCC cell lines to determine the likeliest phenotype of the OCCC cell lines compared to primary

ovarian cancers. Posterior probabilities were estimated for each cell line in comparison to the following

phenotypes: clear cell, endometrioid, mucinous and serous epithelial.

2) TP53 mutation analysis in OCCC cell lines

The primers used for TP53 sequencing have previously been described by Cooper et al (34). Tumour

DNA was amplified using forward and reverse primer pairs in a 50μl reaction volume containing 20ng of

2

template DNA, 0.8 μM of each primer, 0.2 μM dNTP, 1.5 mM MgCl2, 0.3 units of AmpliTaq Gold Taq

polymerase (Applied Biosystems, Warrington, UK), and 1 x PCR buffer, and amplified using the

following cycle parameters: 95 °C for 10 min, followed by 35 cycles of 95 °C for 30 sec, 56 °C for 30

sec, 72 °C for 30 sec, and a subsequent final extension of 72 °C for 10 min and incubation of

incubation of 4 °C. 5μl of PCR product was visualised after being run on a 2% w/v agarose gel. PCR

products (45μl) were subsequently cleaned using Min-elute columns (Qiagen) according to the

manufactures instructions and eluted in 50μl.

Sequencing reactions were carried out with DNA Sequencing Kit BigDye Terminator v 1.1 Cycle

Sequencing Ready Reaction Mix (Applied Biosystems, Warrington, UK), in a 10 μl reaction using

1.0mM of the forward or reverse primers, 4μl BigDye, 2 μl cleaned PCR product and 3.5μl nuclease

free water, (with cycle parameters 96 °C 1 minute, followed by 25 cycles of 96 °C for 20 sec, 50 °C for

20 sec, 60 °C for 4 minutes and final incubation at 4 °C). 10 μl of the sequencing product was cleaned

with the Dye-ex columns (Qiagen) according to manufacturers instructions. Products were dried at 70

°C for 30 minutes and resuspended in Hi-Di Formamide (Applied Biosystems, Warrington, UK) and run

on an Applied Biosystems 3100 Genetic Analyser. Sequences were analysed with Mutation Surveyor

software (Softgenetics, PA, USA). Mutations were confirmed by repeat PCR and sequencing reactions

and by sequencing forward and reverse strands.

3) Quantitative Real-Time Reverse Transcriptase PCR (qRT-PCR)

Briefly, RNA was extracted using the RNeasy FFPE RNA Isolation Kit (Qiagen) followed by an

additional DNase treatment as previously described (14). RNA quantification, quality control and

reverse transcription were performed as previously described (14). RNA samples were quantified using

the Agilent 2100 Bioanalyzer with RNA Nano LabChip Kits (Agilent Biosystems). Criteria for use in

reverse transcription was a concentration of >75ng/μl. In total, 30 with interpretable PPM1D gene copy

3

number status rendered optimal results. Reverse transcription was performed with Superscript III

(Invitrogen) using 400ng of RNA per reaction. Triplicate reactions were performed for each sample (RT-

positive), in addition to an RT-negative reaction to check for the absence of detectable DNA

contamination.

Quantitative real time PCR was performed using TaqMan® chemistry on the ABI Prism

7900HT(Applied Biosystems), using the standard curve method (14, 37). Assays were purchased from

Applied Biosystems. All selected amplicons were less than 85bp to accommodate the degraded nature

of the RNA. In addition, three reference genes (TBP, TFRC and MRPL19) were used, having been

previously selected as effectively normalising for degradation of RNA (14). PPM1D expression levels

were normalised to the geometric mean of the three reference genes. (Assay on demand ID:

Hs00174609_m1-TFRC, Hs00608522_g1-MRPL19 and Hs00186230_m1-PPM1D).

SUPPLEMENTARY FIGURE LEGENDS

Supplementary Figure 1: Prediction Analysis of Microarrays (PAM) predictor of histological subtypes

of primary ovarian cancers. A) One hundred and twenty-six genes were identified to classify correctly

primary ovarian samples into clear cell, endometrioid, mucinous and serous cancers or normal ovary.

B) Results of the predicted histological types subtypes based on the PAM predictor. Note that the

misclassification rate is 18.3%. C) Posterior probabilities for ovarian clear cell carcinoma cell lines

based on the PAM predictor. Note that all cell lines displayed a high correlation with the transcriptomic

profile of primary ovarian clear cell carcinomas.

Supplementary Figure 2: PPM1D shRNA induces knockdown of PPM1D mRNA and protein. A)

Quantitative real time RT-PCR assessment of PPM1D mRNA levels in HeLa, KOC7C and TOV21G 24

hours after transfection with scrambled control (SC) or PPM1D shRNA (shRNA). B) Western blot

illustrating the protein expression levels of PPM1D in HeLa, KOC7C and TOV21G at baseline and 24

hours after transfection with scramble control or PPM1D shRNA.

SUPPLEMENTARY TABLE CAPTIONS

Supplementary Table 1 – Gains Losses and amplifications for 12 OCCC cell lines

Chrom = Chromosome, Start = Start of region, End = End of region, Start.bac = bacterial artificial

chromosome at start of region, End.bac = bacterial artificial chromosome at end of region, BACs = No.

of bacterial artificial chromosomes within region of copy number alteration, Length MB = size of copy

number alteration in MB, maxM = maximum M-value (aws ratio) within region, Mirna = micro RNAs,

aCGH.CNVs = previously reported microarray comparative genomic hybridisation copy number

variations/ polymorphisms.

Supplementary Table 2 – Recurrent gains and losses in ≥4 OCCC cell lines

2


chromosome at start of region, End.bac = bacterial artificial chromosome at end of region, BACs = No.

of bacterial artificial chromosomes within region of copy number alteration, Length MB = size of copy

number alteration in MB, maxM = maximum M-value (aws ratio) within region, Mirna = micro RNAs,

aCGH CNVs = previously reported microarray comparative genomic hybridisation copy number

variations/ polymorphisms.

Supplementary Table 3 – Regions of high level amplification (Log2ratio>0.8) in OCCC cell lines


chromosome at start of region, End.bac = bacterial artificial chromosome at end of region, Mirna =

micro RNAs, aCGH.CNVs = previously reported microarray comparative genomic hybridisation copy

number variations/ polymorphisms.

Supplementary Table 4 – smallest region of overlap for amplified regions (Log2ratio>0.4) in 2 or

more OCCC cell lines


chromosome at start of region, End.bac = bacterial artificial chromosome at end of region, Mirna =

micro RNAs, aCGH.CNVs = previously reported microarray comparative genomic hybridisation copy

number variations/ polymorphisms.

Supplementary Table 5 – List of genes whose expression correlate with copy number gains and/

or amplification.

Symbol = HUGO gene symbol, refseq: NCBI Reference Sequence, unigene: NCBI UniGene reference,

Start (kb) = Start of region in kilobases, End (kb) = End of region in kilobases, t.test.p.gain: two-tailed p

value for correlations between gains and/ or amplification and mRNA expression levels.

3

Supplementary Table 6 – Gene networks identified as significantly enriched using the Ingenuity

Pathways Analysis software based on the list of genes whose expression correlated with copy

number gains and/ or gene amplification.

In bold, genes whose expression significantly correlated with copy number gains and/ or gene

amplification. Ingenuity Pathway Analysis scores >30 are considered highly significant.

Supplementary Table 7 – List of genes whose expression correlate with deletion.

Symbol = HUGO gene symbol, refseq: NCBI Reference Sequence, unigene: NCBI UniGene reference,

Start (kb) = Start of region in kilobases, End (kb) = End of region in kilobases, t.test.p.loss: two-tailed p

value for correlations between losses (deletions) and mRNA expression levels.

Supplementary Table 8 – Gene networks identified as significantly enriched using the Ingenuity

Pathways Analysis software based on the list of genes whose expression correlated with copy

number losses.

In bold, genes whose expression significantly correlated with copy number loss. Ingenuity Pathway

Analysis scores >30 are considered highly significant.

Supplementary Table 9 – Correlation of copy number gains/amplification and mRNA level for

genes within regions of high level amplification

Mean-Gain = Arithmetic average of Illumina expression values in cell lines with copy number gain or

amplification (aws ratios > 0.12), Mean-No Gain = Arithmetic average of Illumina expression values in

cell lines with no copy number gain/ amplification (aws ratios ≤0.12).

Supplementary Table 10 – List of genes in highly amplified regions (log2ratio > 0.8) significantly

correlated with aws ratios (Pearson’s, p < 0.05) and associated with copy number gains

(unpaired t-test, p < 0.05).

4

Information on gene ontology for each gene was retrieved from the Gene Ontology database

(http://www.geneontology.org/).

*: Arithmetic average of Illumina expression values in cell lines with copy number gain or amplification

(aws ratios > 0.12); **: Arithmetic average of Illumina expression values in cell lines with no copy

number gain/ amplification (aws ratios ≤0.12).

NA: Not available.

NB: Supplementary tables have been saved in a high resolution PDF format, which can be zoomed in

with optimal resolution up to 800%.

Supplementary Table 1

12 OCCC cell lines:gains, losses and

amplifications

TOV21-G

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands

5 68889990 69500207 RP11-696L12RP11-

629O23 6 0.610217 0.507667572 SMA4 V_4448_LC7017_Wong et al. (2007), V_4451_LC7017_Wong et al. (2007) q13.2

5 69487717 70498369 RP11-138M1CTD-

2012J21 16 1.010652 0.427419068 SMA5, SERF1A, SERF1B, SMN1, SMN2, NAIP, GTF2H2, LOC653866V_0064_LC7017_Iafrate et al. (2004), V_0710_LC7017_Sharp et al. (2005), V_0711_LC7017_Sharp et al. (2005), V_2088_LC7017_Locke et al. (2006), V_2089_LC7017_Locke et al. (2006),

V_4449_LC7017_Wong et al. (2007), V_4450_LC7017_Wong et al. (2007), V_4452_LC7017_Wong et al. (2007) q13.2

9 38765151 39067744 RP11-73E13RP11-

475B17 3 0.302593 0.464774811 CNTNAP3 p13.1

9 41740871 44206623 RP11-680B13RP11-192J7 10 2.465752 0.443565102 ANKRD20A2

V_0752_LC11330_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_2140_LC11330_Locke et al. (2006), V_2142_LC11330_Locke et al. (2006), V_2143_LC11330_Locke et al. (2006), V_2149_LC11330_Locke et al. (2006), V_4621_LC11330_Wong et al. (2007), V_4622_LC11330_Wong et al. (2007), V_4624_LC11330_Wong et al. (2007),

V_4627_LC11330_Wong et al. (2007), V_4637_LC11330_Wong et al. (2007) p12-p11.2

9 44924895 70389343 RP11-157L3RP11-

151G22 27 25.464448 0.47115857 LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5, C9orf71

_ _ _ p ( ), _ _ _ p ( ), _ _ _ p ( ), _ _ _ p ( ), _ _ _ p ( ),V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2141_LC11344_Locke et al. (2006), V_2144_LC11344_Locke et al. (2006), V_2145_LC11344_Locke et al. (2006), V_2146_LC11344_Locke et al. (2006), V_2147_LC11344_Locke et al. (2006), V_2148_LC11344_Locke et al. (2006), V_2150_LC11344_Locke et al. (2006), V_2151_LC11344_Locke et al. (2006),

V_4625_LC11344_Wong et al. (2007), V_4629_LC11330_Wong et al. (2007), V_4630_LC11344_Wo p11.2-q13

10 63259 45590168 RP11-631M21RP11-171J6 413 45.526909 0.736704781

TUBB8, ZMYND11, DIP2C, LARP5, GTPBP4, IDI2, IDI1, WDR37, LOC399706, ADARB2, PFKP, PITRM1, KLF6, AKR1CL2, AKR1C1, AKR1C2, AKR1C3, AKR1CL1, AKR1C4, UCN3, TUBAL3, NET1, CALML5, CALML3, ASB13, GDI2, ANKRD16, FBXO18, IL15RA, IL2RA, RBM17, PFKFB3, PRKCQ, SFMBT2, ITIH5, ITIH2, KIN, ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2, USP6NL, ECHDC3, C10orf47, UPF2, DHTKD1, SEC61A2, NUDT5, C10orf7, CAMK1D, CCDC3, OPTN, MCM10, C10orf49, PHYH,

SEPHS1, C10orf30, PRPF18, FRMD4A, FAM107B, ARMETL1, HSPA14, SUV39H2, DCLRE1C, MEIG1, THEDC1, ACBD7, C10orf111, RPP38, NMT2, C10orf38, ITGA8, C10orf97, PTER, C1QL3, RSU1, CUBN, DNMT2, VIM, ST8SIA6, PTPLA, STAM, LOC340843, MRC1, MRC1L1, SLC39A12, CACNB2, NSUN6, ARL5B, PLXDC2, NEBL, C10orf113, C10orf114, FLJ45187, MLLT10, DNAJC1, COMMD3, PCGF4, SPAG6, PIP5K2A, ARMC3, MSRB2, PTF1A, C10orf67, KIAA1217, ARHGAP21, PRTFDC1,

C10orf63, THNSL1, GPR158, MYO3A, GAD2, APBB1IP, PDSS1, ABI1, ANKRD26, YME1L1, MASTL, ACBD5, LOC387646, PTCHD3, RAB18, IRXL1, ARMC4, MPP7, WAC, BAMBI, LYZL1, SVIL, PAPD1, MAP3K8, LYZL2, ZNF438, ZEB1, ARHGAP12, KIF5B, EPC1, CCDC7, C10orf68, ITGB1, NRP1, PARD3, CUL2, CREM, C10orf9, CX40.1, FZD8, ANKRD30A, ZNF248, ZNF25, ZNF33A, Z

V_0763_LC12261_Sharp et al. (2005), V_2152_LC12261_Locke et al. (2006), V_4664_LC11931_Wong et al. (2007), V_4665_LC12095_Wong et al. (2007), V_4666_LC12101_Wong et al. (2007), V_4667_LC12118_Wong et al. (2007), V_4668_LC12124_Wong et al. (2007), V_4670_LC12172_Wong et al. (2007), V_4671_LC12175_Wong et al. (2007), V_4672_LC12205_Wong et al. (2007), V_4673_LC12210_Wong et al. (2007), V_4674_LC12215_Wong et al. (2007), V_4675_LC12231_Wong et al. (2007), V_4676_LC12245_Wong et al. (2007), V_4677_LC12257_Wong et al. (2007),

V_4678_LC12257_Wong et al. (2007), V_4679_LC12257_Wong et al. (2007), V_4680_LC12257_Wong et al. (2007), V_4771_LC12261_Wong et al. (2007) p15.3-q11.21

10 47928933 48384027 RP11-673N13RP11-

123F14 5 0.455094 0.355842419 ZNF488, RBP3, GDF2, GDF10, PTPN20A, PTPN20B V_4690_LC12274_Wong et al. (2007), V_4691_LC12288_Wong et al. (2007) q11.22

10 49150180 50782475 RP11-772K6RP11-

550D11 17 1.632295 0.499159867 FRMPD2, MAPK8, ARHGAP22, LRRC18, C10orf72, C10orf71, LOC644168, ERCC6, PGBD3, SLC18A3, CHAT, C10orf53, OGDHL, PARG q11.22-q11.23

10 55595995 56571781 RP11-313B15RP11-

631B10 7 0.975786 0.619344441 PCDH15 q21.1

10 56919452 58301654 RP11-417C13RP11-

201B18 16 1.382202 0.542690805 ZWINT V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007) q21.1

10 64414560 76964519 RP11-144G16RP11-735L1 139 12.549959 0.546164069

NRBF2, JMJD1C, REEP3, CTNNA3, LRRTM3, DNAJC12, SIRT1, HERC4, FLJ14437, ATOH7, MAWBP, HNRPH3, RUFY2, DNA2L, SLC25A16, CXXC6, CCAR1, STOX1, DDX50, DDX21, KIAA1279, PRG1, VPS26A, SUPV3L1, HKDC1, HK1, TACR2, TSPAN15, NEUROG3, C10orf35, COL13A1, H2AFY2, AMID, TYSND1, SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, NODAL, KIAA1274, PRF1, ADAMTS14, C10orf27, SGPL1, PCBD1, UNC5B, SLC29A3, CDH23, C10orf54, PSAP, CHST3, SPOCK2, ASCC1, C10orf104, DDIT4, DNAJB12, CBARA1, C10orf42, OIT3, PLA2G12B, P4HA1, NUDT13, ECD, DNAJC9, MRPS16, TTC18, ANXA7, ZMYND17, PPP3CB, USP54, MYOZ1, SYNPO2L, SEC24C, FUT11, CHCHD1, KIAA0913, NDST2, CAMK2G, C10orf55, PLAU, VCL, AP3M1,

ADK, MYST4, DUPD1, DUSP13, SAMD8, VDAC2, COMTD1, LOC439985, ZNF503 V_4697_LC12385_Wong et al. (2007), V_4698_LC12387_Wong et al. (2007), V_4699_LC12389_Wong et al. (2007), V_4700_LC12395_Wong et al. (2007), V_4701_LC12398_Wong et al. (2007) q21.2-q22.2

10 78969959 88665871 RP11-122P13RP11-

420K10 84 9.695912 0.614226649KCNMA1, DLG5, POLR3A, RPS24, RAI17, PPIF, C10orf56, SFTPA2, SFTPA1, SFTPD, C10orf57, PLAC9, ANXA11, MAT1A, DYDC1, DYDC2, C10orf58, TSPAN14, SH2D4B, NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1, WAPAL,

OPN4, LDB3, BMPR1AV_0762_LC12488_Sharp et al. (2005), V_0765_LC12481_Sharp et al. (2005), V_2157_LC12477_Locke et al. (2006), V_2158_LC12478_Locke et al. (2006), V_2159_LC12481_Locke et al. (2006),

V_2160_LC12485_Locke et al. (2006), V_2161_LC12488_Locke et al. (2006), V_4704_LC12478_Wong et al. (2007), V_4705_LC12506_Wong et al. (2007) q22.3-q23.2

10 92463837 135354737 RP11-103A2RP11-

1065F16 393 42.8909 0.781913281

HTR7, RPP30, ANKRD1, PCGF5, HECTD2, PPP1R3C, TNKS2, FGFBP3, BTAF1, CPEB3, IDE, KIF11, HHEX, EXOC6, CYP26C1, CYP26A1, FER1L3, CEP55, GPR120, RBP4, PDE6C, C10orf4, LGI1, TMEM20, PLCE1, NOC3L, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, C10orf129, PDLIM1, SORBS1, ALDH18A1, C10orf61, ENTPD1, C10orf130, CCNJ, ZNF518, BLNK, DNTT, TMEM10, TLL2, SMBP, PIK3AP1, LCOR, C10orf12, SLIT1, ARHGAP19, FRAT1, FRAT2, KIAA0690, PGAM1, EXOSC1, ZDHHC16, MMS19L, UBTD1, ANKRD2, C10orf65, C10orf62, C10orf83, PI4KII, AVPI1, ZFYVE27, SFRP5, C10orf132, CRTAC1, C10orf28, LOXL4, C10orf33, HPS1, HPSE2, CNNM1, GOT1, NKX2-3, SLC25A28, ENTPD7, COX15, CUTC, ABCC2, DNMBP, CPN1, SPFH1,

CHUK, CWF19L1, BLOC1S2, PKD2L1, SCD, WNT8B, SEC31L2, NDUFB8, HIF1AN, PAX2, C10orf6, SEMA4G, MRPL43, PEO1, LZTS2, PDZD7, SFXN3, KAZALD1, TD1, TLX1, LBX1, BTRC, POLL, RP11-529I10., FBXW4, FGF8, NPM3, MGEA5, KCNIP2, C10orf76, HPS6, LDB1, PPRC1, NOLC1, ELOVL3, PITX3, GBF1, NFKB2, PSD, FBXL15, CUEDC2, C10orf95, C10orf77, ACTR1A, SUFU, TRIM8, ARL3, SFXN2, C10orf26, CYP17A1, C10orf32, AS3MT, CNNM2, NT5C2, INA, PCGF6, TAF5, USMG5, PDCD11,

FAM26B, FAM26C, NEURL, SH3PXD2A, OBFC1, SLK, COL17A1, C10orf78, C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SOR

V_0370_LC12807_Le Caignec et al. (2005), V_0766_LC12664_Sharp et al. (2005), V_2162_LC12807_Locke et al. (2006), V_4709_LC12564_Wong et al. (2007), V_4710_LC12569_Wong et al. (2007), V_4711_LC12583_Wong et al. (2007), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007), V_4714_LC12735_Wong et al. (2007), V_4715_LC12747_Wong et al. (2007), V_4716_LC12779_Wong et al. (2007), V_4717_LC12807_Wong et al. (2007), V_4718_LC12807_Wong et al. (2007), V_4719_LC12807_Wong et al. (2007), V_4720_LC12807_Wong et al.

(2007), V_4721_LC12807_Wong et al. (2007), V_4722_LC12807_Wong et al. (2007), V_4723_LC12807_Wong et al. (2007), V_4724_LC12807_Wong et al. (2007) q23.31-q26.3

24 9027703 10457098 RP11-1207L5RP11-155J5 4 1.429395 0.384531547 TSPY1, LOC728137 V_0829_LC21231_Sharp et al. (2005), V_2285_LC21231_Locke et al. (2006) p11.2

24 14779503 16075024 RP11-139C10RP11-

573M16 19 1.295521 0.407895823 NLGN4Y q11.221

24 24258894 57705178 CTD-2114E11CTD-

2341N11 25 33.446284 0.513870215 DAZ3, DAZ1, BPY2, BPY2B, BPY2C, CDY1, CDY1B, SPRY3, SYBL1 V_2288_LC21265_Locke et al. (2006), V_2291_LC21265_Locke et al. (2006), V_4843_LC21267_Wong et al. (2007) q11.223-q12

chrom start end start.bac end.bac BACs length MB minM genes mirnas acgh.cnvs cytobands


4 3414014 3708859 RP11-565K22RP11-70C24 3 0.294845 0.996957075 HGFAC, C4orf25, LRPAP1 V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) p16.2

9 44671177 45067152 RP11-683C9RP11-

353M14 3 0.395975 0.685599593 V_0744_LC11330_Sharp et al. (2005), V_2133_LC11330_Locke et al. (2006), V_4628_LC11330_Wong et al. (2007), V_4629_LC11330_Wong et al. (2007), V_5000_LC11330_Wong et al. (2007) p11.2

10 45408531 48099141 RP11-534N5RP11-

463P17 24 2.69061 0.727570014 ANUBL1, FAM21C, CTGLF1, LOC594834, PDZK5B, SYT15, KIAA0514, PPYR1, ANXA8, LOC653107, ZNF488, RBP3, GDF2, GDF10

V_0136_LC12274_Iafrate et al. (2004), V_0764_LC12274_Sharp et al. (2005), V_2153_LC12274_Locke et al. (2006), V_2154_LC12274_Locke et al. (2006), V_4681_LC12274_Wong et al. (2007), V_4682_LC12274_Wong et al. (2007), V_4683_LC12274_Wong et al. (2007), V_4684_LC12274_Wong et al. (2007), V_4685_LC12274_Wong et al. (2007), V_4687_LC12274_Wong et al. (2007),

V_4688_LC12274_Wong et al. (2007), V_4689_LC12274_Wong et al. (2007), V_4690_LC12274_Wong et al. (2007) q11.21-q11.22

10 48372951 49216977 RP11-657O22RP11-165J14 5 0.844026 0.758248397 PTPN20A, PTPN20B, FRMPD2 V_2155_LC12288_Locke et al. (2006), V_4691_LC12288_Wong et al. (2007), V_4692_LC12288_Wong et al. (2007), V_4693_LC12288_Wong et al. (2007) q11.22

10 50896102 55635005 RP11-802H4RP11-

365D20 45 4.738903 0.72879309 PARG, CTGLF5, CTGLF4, MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2, PCDH15 V_2156_LC12305_Locke et al. (2006), V_4686_LC12298_Wong et al. (2007) q11.23-q21.1

10 56500765 56992090 RP11-565B10RP11-

598C10 5 0.491325 0.442052683 q21.1

10 58158558 64556968 RP11-449G20RP11-

671O12 53 6.39841 0.711099768 IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2 V_4696_LC12350_Wong et al. (2007) q21.1-q21.2

10 76902035 79120327 RP11-7C23RP11-

450N18 22 2.218292 0.609735466 C10orf11, KCNMA1 V_0138_LC12468_Iafrate et al. (2004), V_4703_LC12451_Wong et al. (2007) q22.2-q22.3

10 88734014 92505756 RP11-38O2RP11-188C5 33 3.771742 0.683398508 GLUD1, FAM35A, MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7 V_4706_LC12521_Wong et al. (2007), V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007) q23.2-q23.31

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobandsAmplification threshold = 0.8

Amplification threshold = 0.4

Losses

Gains

ES2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 58632049 60245847 RP11-342F23 RP11-13N22 14 1.613798 0.440470142 OMA1, TACSTD2, JUN, FLJ10986, HOOK1, CYP2J2, C1orf87 V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007) p32.2-p32.1

1 63495981 108827898 RP11-673C4 RP11-155D24 451 45.331917 0.939315915

FOXD3, ALG6, ITGB3BP, KIAA1799, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, AK3L2, DNAJC6, LEPR, LEPROT, PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A, GNG12, DIRAS3, GPR177, RPE65, DEPDC1, LRRC7, LRRC40, SFRS11, ANKRD13C, HHLA3, CTH, PTGER3, ZNF265, NEGR1, FPGT, TNNI3K, C1orf173, CRYZ, C1orf171, LHX8, SLC44A5, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3, ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A, C1orf118,

NEXN, FUBP1, DNAJB4, GIPC2, PTGFR, IFI44L, IFI44, LPHN2, TTLL7, PRKACB, SAMD13, DNASE2B, BXDC5, GNG5, SPATA1, CTBS, SSX2IP, EDG7, MCOLN2, MCOLN3, WDR63, C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, CLCA3, SH3GLB1, HS2ST1, LMO4, PKN2, GTF2B, KAT3, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP5, GBP6, LRRC8B, LRRC8C, LRRC8D, ZNF326, BARHL2, ZNF644, HFM1, CDC7, TGFBR3, BRDT, ABHD7, BTBD8, C1orf146, GLMN, C1orf82, GFI1, EVI5, RPL5, FAM69A, MTF2, TMED5, CCDC18, DR1, FNBP1L, BCAR3, DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3, SLC44A3, CNN3, ALG14, TMEM56, RWDD3, PTBP2, DPYD, SNX7, PAP2D, LPPR4, PALMD, FRRS1, AGL, SLC35A3, HIAT1, SASS6, CCDC76, LRRC39, DBT,

RTCD1, CDC14A, GPR88, VCAM1, EXTL2, SLC30A7, DPH5, EDG1, OLFM3, COL11A1, RNPC3, AMY2B, AMY2A, AMY1A, AMY1C, AMY1B

V_0009_LC0463_Iafrate et al. (2004), V_0010_LC0552_Iafrate et al. (2004), V_0011_LC0611_Iafrate et al. (2004), V_0012_LC0649_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_2049_LC0673_Locke et al. (2006), V_4229_LC0493_Wong et al. (2007),

V_4230_LC0507_Wong et al. (2007), V_4231_LC0527_Wong et al. (2007), V_4232_LC0542_Wong et al. (2007), V_4233_LC0552_Wong et al. (2007), V_4234_LC0594_Wong et al. (2007), V_4235_LC0611_Wong et al. (2007), V_4236_LC0622_Wong et al. (2007), V_4237_LC0630_Wong et al. (2007), V_4238_LC0649_Wong et al. (2007),

V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007), V_0365_LC0642_Vissers et al. p31.3-p13.31 118122559 118579279 RP11-278K12 RP11-806J7 3 0.45672 1.000569273 GDAP2, WDR3, SPAG17 p12

1 119071227 144020182 RP11-50I4 RP11-641F2 36 24.948955 1.073585296 TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2, LOC440607, NBPF20, PDE4DIP, SEC22B, NOTCH2NL

V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007),

V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007), V_4251_LC0752_Wong et al. (2007), V_4252_LC0752_Wong et al. (2007) p12-q21.1

1 150078664 152077198 RP11-139D23 RP11-354A16 17 1.998534 1.026280369

THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN, LCE5A, C1orf42, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4, S100A3, S100A2, S100A16, S100A14, S100A13, S100A1, C1orf77, SNAPAP, ILF2,

NPR1, INTS3, SLC27A3, GATAD2B q21.3

1 155315174 172040735 RP11-96J3 RP11-339A6 171 16.725561 0.664277985

FCER1A, OR10J3, OR10J1, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, VSIG8, CCDC19, TAGLN2, IGSF9, SLAMF9, PIGM, KCNJ10, KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1, PEA15, WDR42A, PEX19, COPA, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, ITLN2, F11R, USF1, ARHGAP30, PVRL4, KARCA1, PFDN2, NIT1, DEDD, UFC1, USP21, PPOX, B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, NR1I3, MPZ, SDHC, C1orf192, FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2, DUSP12, ATF6, OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52, MGST3, ALDH9A1, TMCO1, UCK2, FAM78B, POGK, TADA1L, C1orf32, MAEL, GPA33, DUSP27, POU2F1, CD247, CREG1, RCSD1, MPZL1, SAC, BRP44, IQWD1, GPR161, TIPRL, SFT2D2, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BLZF1, C1orf114, SLC19A2, F5, SELP, SELL, SELE, C1orf156, C1orf112, SCYL3, KIFAP3, SCYL1BP1, PRRX1, C1orf129,

FMO3, FMO2, FMO1, FMO4, BAT2D1, MYOC, VAMP4, KIAA0859, DNM3, C1orf105, PIGC, C1orf9, FASLG, TNFSF18, TNFSF4, PRDX6, SLV_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al.

(2007) q23.1-q25.13 98649728 101584175 RP11-92L17 RP11-320C17 27 2.934447 0.428581919 EPHA6, ARL6, DKFZp667G211, MINA, OR5AC2, OR5H1, OR5H14, OR5H15, OR5H6, OR5H2, OR5K4, OR5K3, OR5K1, OR5K2, CLDND1, GPR15, CPOX, ST3GAL6, DCBLD2, COL8A1, FLJ44076, C3orf26, DOC1, TBC1D23, NIT2, TOMM70A q11.2-q12.23 106162252 109962649 RP11-606P18 RP11-732N15 55 3.800397 0.835793047 ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, KIAA1524, DZIP3, RETNLB V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007) q13.11-q13.133 110930566 112726135 RP11-204G14 RP11-587I11 23 1.795569 0.56678345 PVRL3 V_4350_LC3509_Wong et al. (2007) q13.13

3 150630823 162065792 RP11-619A5 RP11-736F8 115 11.434969 1.091184159TM4SF4, WWTR1, COMMD2, RNF13, PFN2, TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33,

SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ, SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L V_0037_LC3745_Iafrate et al. (2004), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007) q25.1-q26.13 188977637 195170190 RP11-30O15 RP11-730E2 59 6.192553 0.624209072 LPP, FAM79B, TP73L, LEPREL1, CLDN1, CLDN16, UNQ846, IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12, C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1 V_2062_LC4004_Locke et al. (2006) q27.3-q293 198132998 199446704 RP11-780L6 RP11-652A1 13 1.313706 0.49524759 SENP5, NCBP2, PIGZ, MFI2, DLG1, BDH1, FYTTD1, LRCH3, IQCG, RPL35A, LMLN V_0043_LC4057_Iafrate et al. (2004), V_0044_LC4057_Iafrate et al. (2004), V_4370_LC4057_Wong et al. (2007) q294 39007380 40676509 RP11-373D14 RP11-316H10 21 1.669129 0.387867977 RFC1, KLB, RPL9, LIAS, UGDH, LOC201895, HIP2, SCC-112, N4BP2, RHOH, CHRNA9, FLJ20273, FLJ14001, APBB2 p14

5 32931107 36944365 RP11-715A22 RP11-369L23 50 4.013258 0.922894188 TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBLV_0062_LC6809_Iafrate et al. (2004), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_4437_LC6794_Wong et al. (2007), V_4438_LC6794_Wong et al.

(2007) p13.3-p13.25 37524528 42101827 RP11-49C16 RP11-423L16 60 4.577299 1.042101271 WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4 V_0063_LC6852_Iafrate et al. (2004), V_4439_LC6842_Wong et al. (2007) p13.2-p13.15 82793638 89851214 RP11-275E14 RP11-343B10 106 7.057576 0.518859879 CSPG2, HAPLN1, EDIL3, COX7C, RASA1, CCNH, MGC33214, MEF2C, CETN3, LOC153364, POLR3G, LYSMD3 V_0066_LC7143_Iafrate et al. (2004), V_4458_LC7135_Wong et al. (2007), V_4459_LC7146_Wong et al. (2007), V_4460_LC7164_Wong et al. (2007) q14.2-q14.35 90979805 92675440 RP11-56D13 RP11-163E11 30 1.695635 0.515842183 V_4461_LC7181_Wong et al. (2007), V_4462_LC7186_Wong et al. (2007), V_4463_LC7186_Wong et al. (2007) q14.3-q155 92897553 99032923 RP11-241L8 RP11-606G5 82 6.13537 0.860055847 NR2F1, C5orf21, FLJ25680, MGC34713, ANKRD32, MCTP1, FAM81B, KIAA0372, ARSK, GPR150, LOC317671, SPATA9, RHOBTB3, GLRX, ELL2, PCSK1, CAST, ARTS-1, LRAP, LNPEP, LIX1, RIOK2, RGMB, CHD1 V_0712_LC7231_Sharp et al. (2005), V_4465_LC7201_Wong et al. (2007), V_4466_LC7203_Wong et al. (2007), V_4467_LC7210_Wong et al. (2007) q15-q21.16 8147452 9989733 RP11-438E10 RP11-784H11 28 1.842281 0.398589281 SLC35B3 p24.36 11402225 13244852 RP11-671B5 RP11-776M24 24 1.842627 0.478198944 C6orf105, HIVEP1, EDN1, PHACTR1 p24.1

6 44543402 62525980 RP11-61H5 RP11-809E7 149 17.982578 0.749649587

SUPT3H, RUNX2, CLIC5, ENPP4, ENPP5, DSCR1L1, CYP39A1, SLC25A27, TDRD6, PLA2G7, MEP1A, GPR116, GPR110, TNFRSF21, CD2AP, GPR111, GPR115, OPN5, LOC442213, FLJ41841, MUT, C6orf139, RHAG, CRISP2, CRISP3, PGK2, CRISP1, DEFB114, DEFB113, DEFB110, DEFB111, DEFB112, TFAP2D, TFAP2B, PKHD1, IL17, IL17F, MCM3, PAQR8, EFHC1, TRAM2, TMEM14A, GSTA2, GSTA1, GSTA5, GSTA3, GSTA4, ICK, FBXO9, GCM1, ELOVL5, GCLC, KLHL31, LRRC1, C6orf142, TINAG, C6orf143, HCRTR2, UNQ9356, HMGCLL1,

BMP5, COL21A1, DST, C6orf65, KIAA1586, ZNF451, BAG2, RAB23, PRIM2A, GUSBL2, KHDRBS2V_0078_LC8319_Iafrate et al. (2004), V_0080_LC8417_Iafrate et al. (2004), V_0718_LC8331_Sharp et al. (2005), V_4494_LC8335_Wong et al. (2007), V_4495_LC8337_Wong et al.

(2007), V_4496_LC8416_Wong et al. (2007) p21.1-q11.16 167489044 169888229 RP11-474D7 RP11-82B3 20 2.399185 0.630307335 GPR31, UNC93A, TTLL2, TCP10, LOC401286, LOC653483, MLLT4, KIF25, FRMD1, DACT2, SMOC2, THBS2, WDR27, C6orf120, PHF10, TCTE3 V_2098_LC9057_Locke et al. (2006) q277 7010427 9092206 RP11-174C14 RP11-304A10 16 2.081779 1.299892523 C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1 V_2099_LC9264_Locke et al. (2006), V_4525_LC9277_Wong et al. (2007) p22.1-p21.3

7 9429691 25906103 RP11-790O3 RP11-193J2 160 16.476412 0.959075396LOC392631, NDUFA4, PHF14, TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11,

CDCA7L, RAPGEF5, IL6, TOMM7, DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9

V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_4526_LC9320_Wong et al. (2007),

V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007) p21.3-p15.2

7 27362363 32598909 RP11-749D1 RP11-380B10 53 5.236546 2.536435835 HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16, PDE1C, LSM5, KIAA0241 V_4529_LC9384_Wong et al. (2007) p15.2-p14.37 33356417 35491256 RP11-66P15 RP11-527P3 23 2.134839 0.544360911 PTHB1, BMPER, AAA1, GPR154, TBX20 p14.37 38042283 43695677 RP11-596H10 RP11-10N14 52 5.653394 0.721780187 STARD3NL, TARP, AMPH, VPS41, POU6F2, C7orf36, RALA, CDC2L5, C7orf11, C7orf10, INHBA, GLI3, C7orf25, PSMA2, MRPL32, HECW1, STK17A, FLJ10803 V_4530_LC9436_Wong et al. (2007) p14.1-p137 44973357 48656988 CTD-2204C20 RP11-604B16 37 3.683631 0.59913265 MYO1G, CCM2, TBRG4, RAMP3, ADCY1, IGFBP1, IGFBP3, LOC641980, TNS3, PKD1L1, FLJ21075, HUS1, SUNC1, UPP1, ABCA13 V_4533_LC9471_Wong et al. (2007), V_4534_LC9482_Wong et al. (2007), V_4535_LC9486_Wong et al. (2007) p13-p12.37 54200664 55387311 RP11-383O8 RP11-708P5 11 1.186647 0.826759141 MGC33530, SEC61G, EGFR p11.27 57194816 57964582 RP11-237O15 RP11-548K12 11 0.769766 0.535493548 p11.2-p11.1

7 127398355 141623738 RP11-809F9 RP11-10L5 161 14.225383 0.609507185

SND1, NAG8, LRRC4, LEP, RBM28, IMPDH1, HIG2, METTL2B, FLJ45340, LOC346653, NYD-SP18, CALU, OPN1SW, NAG6, FLNC, ATP6V1F, IRF5, TNPO3, TSPAN33, SMO, KIAA0828, FAM40B, NRF1, UBE2H, ZC3HC1, KIAA0265, FLJ14803, LOC136263, CPA2, CPA4, CPA5, CPA1, TSGA14, MEST, COPG2, TSGA13, KLF14, FLJ43663, MKLN1, PODXL, PLXNA4B, FLJ40288, CHCHD3, EXOC4, FLJ32786, SLC35B4, AKR1B1, AKR1B10, LOC441282, BPGM, CALD1, TMEM140, MGC5242, HSPC049, LOC346673, CNOT4, NUP205, SLC13A4,

UNQ1940, MTPN, CHRM2, PTN, DGKI, CREB3L2, AKR1D1, TRIM24, LOC136306, ATP6V0A4, MGC14289, ZC3HAV1, TTC26, HSPC268, LUC7L2, FLJ44186, CLEC2L, HIPK2, TBXAS1, PARP12, KIAA1718, SLC37A3, RAB19B, MKRN1, DENND2A, ADCK2, NDUFB2, BRAF, MRPS33, LOC401410, MULK, KIAA1147, FLJ40852, SSBP1, TAS2R3, TAS2R4, TAS2R5, LOC136242, OR9A4, CLEC5A, TAS2R38, MGAM, TRY1

V_4558_LC9916_Wong et al. (2007), V_4559_LC9920_Wong et al. (2007), V_4560_LC9934_Wong et al. (2007), V_4561_LC9937_Wong et al. (2007), V_4562_LC9987_Wong et al. (2007) q32.1-q34

7 141943447 147217635 RP11-453N21 RP11-284J17 47 5.274188 0.492710353PRSS1, PRSS2, EPHB6, TRPV6, TRPV5, C7orf34, KEL, OR9A2, OR6V1, PIP, TAS2R39, TAS2R40, GSTK1, TMEM139, CASP2, CLCN1, KIAA0773, FAM131B, ZYX, EPHA1, TAS2R60, TAS2R41, LOC441294, FLJ40722, KIAA0738, OR2F2, OR2F1, OR6B1, OR2A5, OR2A25,

OR2A12, OR2A2, OR2A14, FLJ43692, OR2A7, OR2A1, OR2A42, ARHGEF5, NOBOX, TPK1, LOC402715, CNTNAP2

V_0110_LC10016_Iafrate et al. (2004), V_0725_LC10016_Sharp et al. (2005), V_0726_LC10016_Sharp et al. (2005), V_2107_LC10016_Locke et al. (2006), V_2108_LC10016_Locke et al. (2006), V_2109_LC10016_Locke et al. (2006), V_2110_LC10016_Locke et al. (2006), V_4563_LC10013_Wong et al. (2007), V_4564_LC10013_Wong et al. (2007),

V_4565_LC10013_Wong et al. (2007), V_4566_LC10013_Wong et al. (2007), V_4567_LC10013_Wong et al. (2007), V_4568_LC10016_Wong et al. (2007), V_4569_LC10016_Wong et al. (2007), V_4570_LC10016_Wong et al. (2007), V_4571_LC10016_Wong et al. (2007), V_4572_LC10016_Wong et al. (2007), V_4573_LC10016_Wong et al. (2007) q34-q35

7 148001891 151588375 RP11-801N1 RP11-137O21 32 3.586484 0.441254565CUL1, EZH2, PDIA4, ZNF786, ZNF425, ZNF398, ZNF282, ZNF212, ZNF783, ZNF777, FLJ31413, FLJ12700, KRBA1, ZNF467, SSPO, LOC401431, ATP6V0E2L, LRRC61, C7orf29, RARRES2, REPIN1, ZNF775, LOC728743, GIMAP8, GIMAP7, GIMAP4, GIMAP6, GIMAP2,

GIMAP1, GIMAP5, LR8, HCA112, ABP1, KCNH2, NOS3, ATG9B, ABCB8, ACCN3, CDK5, SLC4A2, FASTK, C7orf21, CENTG3, ASB10, ABCF2, CSGlcA-T, SMARCD3, NYREN18, LOC349136, CRYGN, RHEB, PRKAG2, GALNTL5, GALNT11, MLL3 V_0727_LC10049_Sharp et al. (2005), V_0728_LC10049_Sharp et al. (2005), V_4574_LC10061_Wong et al. (2007) q36.17 152520575 158818116 RP11-715L6 CTD-2319F20 74 6.297541 0.695701316 FLJ16734, DPP6, PAXIP1, HTR5A, INSIG1, EN2, PRR8, RBM33, SHH, LOC641940, RNF32, LMBR1, NOM1, HLXB9, UBE3C, DNAJB6, LOC641948, PTPRN2, NCAPG2, FAM62B, WDR60, VIPR2 V_0111_LC10099_Iafrate et al. (2004), V_0729_LC10082_Sharp et al. (2005), V_0730_LC10082_Sharp et al. (2005), V_2111_LC10082_Locke et al. (2006) q36.2-q36.38 58903401 63534034 RP11-26I20 RP11-1007E14 41 4.630633 0.763788927 C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX, CA8, RAB2, CHD7, MGC34646, ASPH, FAM77D V_4595_LC10619_Wong et al. (2007) q12.1-q12.3

8 71312586 143916668 RP11-746L20 RP11-15O18 610 72.604082 1.013687871

FABP5, PMP2, PERF15, FABP4, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16, LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1, WDR21C, MMP16, RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64, EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1, RBM12B, TMEM67, PPM2C, CDH17, GEM, RAD54B, KIAA1429, RBM35A, DPY19L4, INTS8, CCNE2, TP53INP1, C8orf38, PLEKHF2, C8orf37, GDF6, UQCRB, MTERFD1, PTDSS1, SDC2, PGCP, TSPYL5, MTDH, LAPTM4B, MATN2, RPL30, C8orf47, HRSP12, POP1, NPAL2, KCNS2, STK3, OSR2, VPS13B, COX6C, RGS22, FBXO43, POLR2K, SPAG1, RNF19, ANKRD46, MGC39715, PABPC1, YWHAZ, ZNF706, GRHL2, NCALD, RRM2B, EDD1, ODF1, KLF10, AZIN1, ATP6V1C1,

BAALC, FZD6, CTHRC1, SLC25A32, WDSOF1, RIMS2, TM7SF4, DPYS, LRP12, ZFPM2, OXR1, ABRA, ANGPT1, RSPO2, EIF3S6, TTC35, TMEM74, TRHR, NUDCD1, ENY2, PKHD1L1, EBAG9, FLJ20366, KCNV1, CSMD3, TRPS1, EIF3S3, C8orf53, RAD21, LOC441376, SLC30A8, THRAP6, EXT1, SAMD12, TNFRSF11B, COLEC10, MAL2, NOV, ENPP2, TAF2, DCC1, DEPDC6, COL14A1, MRPL13, MTBP, SN

V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong

et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007), V_4605_LC10727_Wong et al. (2007), V_4606_LC10731_Wong et al. (2007), V_4607_LC10749_Wong et al. (2007), V_4608_LC10811_Wong et al. (2007), V_4609_LC10877_Wong et al. (2007), V_4610_LC10912_Wong et al. (2007), V_4611_LC10941_Wong

et al. (2007), V_4791_LC10979_Wong et al. (2007) q13.3-q24.39 2136378 5760791 RP11-48M17 RP11-480I24 30 3.624413 0.885669008 SMARCA2, VLDLR, KCNV2, KIAA0020, RFX3, GLIS3, SLC1A1, C9orf68, PPAPDC2, CDC37L1, AK3, RCL1, JAK2, INSL6, INSL4, RLN2, RLN1, C9orf46, CD274, PDCD1LG2, KIAA1432 p24.3-p24.19 11692977 14943501 RP11-158N20 RP11-725C9 24 3.250524 0.476609175 TYRP1, C9orf150, MPDZ, NFIB, ZDHHC21, CER1, FREM1 V_4615_LC11143_Wong et al. (2007) p23-p22.39 15874139 19201913 RP11-58K1 RP11-151J10 38 3.327774 0.447415063 C9orf93, BNC2, LOC648570, C9orf39, SH3GL2, ADAMTSL1, C9orf94, C9orf138, RRAGA, FAM29A, ADFP V_0128_LC11164_Iafrate et al. (2004) p22.3-p22.1

10 63259 11386923 RP11-631M21 RP11-413A22 89 11.323664 0.736704781TUBB8, ZMYND11, DIP2C, LARP5, GTPBP4, IDI2, IDI1, WDR37, LOC399706, ADARB2, PFKP, PITRM1, KLF6, AKR1CL2, AKR1C1, AKR1C2, AKR1C3, AKR1CL1, AKR1C4, UCN3, TUBAL3, NET1, CALML5, CALML3, ASB13, GDI2, ANKRD16, FBXO18, IL15RA, IL2RA, RBM17,

PFKFB3, PRKCQ, SFMBT2, ITIH5, ITIH2, KIN, ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2 V_4664_LC11931_Wong et al. (2007) p15.3-p14

10 12847033 29140031 RP11-347J11 RP11-478H13 160 16.292998 0.604729985

CAMK1D, CCDC3, OPTN, MCM10, C10orf49, PHYH, SEPHS1, C10orf30, PRPF18, FRMD4A, FAM107B, ARMETL1, HSPA14, SUV39H2, DCLRE1C, MEIG1, THEDC1, ACBD7, C10orf111, RPP38, NMT2, C10orf38, ITGA8, C10orf97, PTER, C1QL3, RSU1, CUBN, DNMT2, VIM, ST8SIA6, PTPLA, STAM, LOC340843, MRC1, MRC1L1, SLC39A12, CACNB2, NSUN6, ARL5B, PLXDC2, NEBL, C10orf113, C10orf114, FLJ45187, MLLT10, DNAJC1, COMMD3, PCGF4, SPAG6, PIP5K2A, ARMC3, MSRB2, PTF1A, C10orf67, KIAA1217, ARHGAP21, PRTFDC1,

C10orf63, THNSL1, GPR158, MYO3A, GAD2, APBB1IP, PDSS1, ABI1, ANKRD26, YME1L1, MASTL, ACBD5, LOC387646, PTCHD3, RAB18, IRXL1, ARMC4, MPP7, WAC, BAMBIV_4665_LC12095_Wong et al. (2007), V_4666_LC12101_Wong et al. (2007), V_4667_LC12118_Wong et al. (2007), V_4668_LC12124_Wong et al. (2007), V_4670_LC12172_Wong

et al. (2007), V_4671_LC12175_Wong et al. (2007) p13-p11.2310 29526372 30633096 RP11-140B3 RP11-679M21 8 1.106724 0.514359659 LYZL1, SVIL V_4672_LC12205_Wong et al. (2007), V_4673_LC12210_Wong et al. (2007) p11.2310 31183318 36895748 RP11-39E10 RP11-400A19 60 5.71243 0.637582685 ZNF438, ZEB1, ARHGAP12, KIF5B, EPC1, CCDC7, C10orf68, ITGB1, NRP1, PARD3, CUL2, CREM, C10orf9, CX40.1, FZD8 V_4675_LC12231_Wong et al. (2007), V_4676_LC12245_Wong et al. (2007) p11.23-p11.21

10 50896102 64556968 RP11-802H4 RP11-671O12 126 13.660866 0.72879309PARG, CTGLF5, CTGLF4, MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2, PCDH15, ZWINT, IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1,

TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2V_2156_LC12305_Locke et al. (2006), V_4686_LC12298_Wong et al. (2007), V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007), V_4696_LC12350_Wong

et al. (2007) q11.23-q21.210 68022959 69605821 RP11-48G1 RP11-5L13 14 1.582862 0.544842032 CTNNA3, LRRTM3, DNAJC12, SIRT1, HERC4, FLJ14437 q21.310 78080901 78992927 RP11-732B2 RP11-619F23 9 0.912026 0.598164766 KCNMA1 V_0138_LC12468_Iafrate et al. (2004) q22.3

10 88508340 93875395 RP11-420K10 RP11-239G4 45 5.367055 0.683398508BMPR1A, MMRN2, SNCG, C10orf116, GLUD1, FAM35A, MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1, PCGF5,

HECTD2, PPP1R3C, TNKS2, FGFBP3, BTAF1, CPEB3 V_4706_LC12521_Wong et al. (2007), V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007) q23.2-q23.3210 105427275 114488515 RP11-367M7 RP11-297A11 81 9.06124 0.593947593 SH3PXD2A, OBFC1, SLK, COL17A1, C10orf78, C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SORCS3, SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1, DUSP5, CSPG6, PDCD4, SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A V_0766_LC12664_Sharp et al. (2005), V_4712_LC12658_Wong et al. (2007) q24.33-q25.210 127211640 128813658 RP11-47L4 RP11-223P11 13 1.602018 0.536079443 C10orf137, MMP21, UROS, BCCIP, DHX32, FANK1, ADAM12, C10orf90, LOC728158, DOCK1 q26.13-q26.2

11 62928781 63926635 RP11-742E6 RP11-64C3 12 0.997854 0.719559338SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, HRASLS3, DKFZP564J086, RTN3, LOC144097, MARK2, RCOR2, NAT11, COX8A, OTUB1, LRP16, FLRT1, STIP1, URP2, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, KCNK4, ESRRA,

HSPC152, PRDX5, CCDC88, RPS6KA4 V_4750_LC13267_Wong et al. (2007), V_4751_LC13267_Wong et al. (2007) q12.3-q13.1

11 64204202 66843545 CTD-2502E12 RP11-157K17 22 2.639343 0.354505724

NRXN2, RASGRP2, PYGM, SF1, MAP4K2, MEN1, CDC42BPG, EHD1, KIAA0404, PPP2R5B, GPHA2, LOC283129, BATF2, ARL2, SNX15, SAC3D1, NAALADL1, CDCA5, ZFPL1, C11orf2, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, LOC387778, CAPN1, FLJ16331, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FKSG44, SCYL1, LTBP3, SSSCA1, FAM89B, KCNK7, MAP3K11, SIPA1, RELA, HTATIP, RNASEH2C, DKFZp761E198, OVOL1, FLJ30934, CFL1, MUS81, EFEMP2, CTSW, FIBP, DIPA, FOSL1, C11orf68, DRAP1, TSGA10IP, SART1, MGC11102, BANF1, CST6, CATSPER1, GAL3ST3, SF3B2, PACS1, KLC2, RAB1B, CNIH2, YIF1A, MGC33486, CD248, RIN1, BRMS1, B3GNT1, SLC29A2, NPAS4, MRPL11, PELI3, DPP3, BBS1, ZDHHC24, ACTN3, CTSF, CCDC87, CCS, RBM14, RBM4, RBM4B, SPTBN2,

FLJ22531, RCE1, PC, LRFN4, SYT12, RHOD, FBXL11, ADRBK1, ANKRD13D, SSH3 V_4752_LC13273_Wong et al. (2007), V_4753_LC13273_Wong et al. (2007), V_4754_LC13285_Wong et al. (2007) q13.111 88463021 89565677 RP11-753A16 RP11-339N5 10 1.102656 0.591665801 TYR, NOX4, PSMAL, TRIM49, NAALAD2 V_4758_LC13426_Wong et al. (2007) q14.3

12 16595 5919344 RP13-492B24 RP11-570D10 56 5.902749 0.925754261IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2, DCP1B, CACNA1C, FKBP4, ITFG2, NRIP2, FOXM1, C12orf32, TULP3, TEAD4, TSPAN9, PRMT8, MGC4266, PARP11,

CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B V_0161_LC13778_Iafrate et al. (2004), V_4765_LC13757_Wong et al. (2007), V_4766_LC13773_Wong et al. (2007) p13.33-p13.31

12 8623654 31158927 RP11-306H23 RP11-294K14 218 22.535273 0.821202436

KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4, PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19, CDKN1B, APOLD1, DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP, FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4, MGP, C12orf46, ARHGDIB, PDE6H, RERG, PTPRO, EPS8, STRAP,

DERA, MGST1, LMO3, FLJ22655, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5, FLJ32894, BCAT1, LRMP, CASC1, LYRM5, KRAS, FLJ36004, RASSF8, BHLHB3, SSPN, ITPR2, C12orf11, FGFR1OP2, TM7SF3, SURB7, LOC728858, STK38L, ARNTL2, PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH, CCDC91, MLSTD1, ERGIC2, OVCH1, TMTC1, IPO8,

C1QDC1, TSPAN11, DDX11, OVOS2V_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007), V_4770_LC13869_Wong

et al. (2007), V_4772_LC13891_Wong et al. (2007), V_4773_LC13907_Wong et al. (2007) p13.31-p11.2112 36144431 38952005 RP11-159F8 RP11-720K15 24 2.807574 0.628672813 ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2 V_4775_LC13974_Wong et al. (2007) q11-q12

14 18544514 19595839 RP11-111I13 CTD-2024K23 9 1.051325 0.502509388 POTE14, LOC440157, OR4Q3, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1, OR4K15, OR4K14, OR4K13

V_0812_LC15340_Sharp et al. (2005), V_2174_LC15340_Locke et al. (2006), V_2175_LC15340_Locke et al. (2006), V_2256_LC15340_Locke et al. (2006), V_4822_LC15340_Wong et al. (2007), V_4823_LC15340_Wong et al. (2007), V_4824_LC15340_Wong et al. (2007), V_4825_LC15340_Wong et al. (2007), V_4826_LC15340_Wong et al. (2007),

V_4827_LC15340_Wong et al. (2007), V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.216 57840451 59509261 RP11-422H19 RP11-801J6 18 1.66881 0.324664562 V_4959_LC16914_Wong et al. (2007) q21

16 77242386 86224189 RP11-798L10 CTD-2505I5 155 8.981803 0.425674187WWOX, MAF, DYNLRB2, CDYL2, C16orf61, C16orf60, ASCIZ, C16orf46, GCSH, PKD1L2, BCMO1, GAN, CMIP, PLCG2, HSPC105, HSD17B2, MPHOSPH6, CDH13, HSBP1, MLYCD, OSGIN1, EFCBP2, LOC146167, MBTPS1, HSDL1, LRRC50, TAF1C, LOC161931, KCNG4,

WFDC1, ATP2C2, KIAA1609, COTL1, C16orf44, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, KIAA0182, Pfs2, MGC17624, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, MAP1LC3B, ZCCHC14, JPH3V_0199_LC17071_Iafrate et al. (2004), V_4968_LC17023_Wong et al. (2007), V_4969_LC17043_Wong et al. (2007), V_4970_LC17076_Wong et al. (2007), V_4971_LC17076_Wong

et al. (2007) q23.1-q24.217 5112395 6804218 RP11-683P7 RP11-816H10 10 1.691823 0.46219235 RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1, KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1 p13.2-p13.117 11132723 12399024 RP11-385G5 RP11-560N10 10 1.266301 0.298647469 FLJ45455, DNAH9, ZNF18, MAP2K4 p13.1-p1217 14282259 15480461 RP11-334P9 RP11-378O18 12 1.198202 0.351655465 FLJ45831, PMP22, TEKT3, CDRT4, FAM18B2, CDRT1, TRIM16 p1217 22387184 23147784 RP11-663N22 RP11-667H8 6 0.7606 0.663513808 WSB1, KSR1, LGALS9, NOS2A q11.1

17 41339059 42110026 RP11-782E1 CTD-2013G18 7 0.770967 1.01291071 MAPT, STH, KIAA1267, LRRC37A, LOC474170, ARL17, NSF

V_0207_LC17522_Iafrate et al. (2004), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006), V_5011_LC17522_Wong et al. (2007),

V_5012_LC17522_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007) q21.31-q21.32

17 45275746 51438604 RP11-699K15 RP11-763E3 61 6.162858 2.00166997TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2,

MBTD1, UTP18, CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP V_0209_LC17565_Iafrate et al. (2004), V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007), V_5019_LC17572_Wong et al. (2007) q21.33-q22

17 53446809 60848689 RP11-575P9 RP11-394K10 104 7.40188 1.285426145

DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1, CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2, MRC2, RNF190, CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2, GH2, CSH1,

CSHL1, GH1, CD79B, SCN4A, ICAM2, ERN1, TEX2, PECAM1, POLG2, DDX5, CCDC45, SMURF2, FLJ34306, GNA13, RGS9

V_0210_LC17626_Iafrate et al. (2004), V_0805_LC17601_Sharp et al. (2005), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_4410_LC17595_Wong et al. (2007), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007),

V_5024_LC17631_Wong et al. (2007) q22-q24.117 61195430 61644232 RP11-115N5 RP11-89L7 5 0.448802 0.468673227 CCDC46, APOH V_5026_LC17636_Wong et al. (2007) q24.1-q24.217 76165451 76474948 RP11-648F10 RP11-810O4 4 0.309497 0.515762884 KIAA1303 q25.318 17653 241246 RP11-683L23 RP11-271E15 3 0.223593 0.334810538 USP14, THOC1 p11.32

18 438451 10627593 RP11-238G18 RP11-319J20 110 10.189142 1.157348441COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3, TTMA, L3MBTL4, ARHGAP28, LAMA1, PTPRM, RAB12, KIAA0802, NDUFV2, ANKRD12,

TWSG1, RALBP1, PPP4R1, RAB31, TXNDC2, VAPA, APCDD1, NAPG V_2236_LC17918_Locke et al. (2006), V_5044_LC17825_Wong et al. (2007), V_5045_LC17914_Wong et al. (2007) p11.32-p11.22

19 8629145 8784792 RP11-743O10 RP11-14H8 8 0.155647 0.408699442 MGC33407, OR2Z1, ZNF558V_0220_LC18794_Iafrate et al. (2004), V_0808_LC18794_Sharp et al. (2005), V_2239_LC18794_Locke et al. (2006), V_2240_LC18794_Locke et al. (2006), V_5079_LC18794_Wong

et al. (2007), V_5080_LC18794_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007) p13.2

20 35434228 43811931 RP11-138A15 RP11-770N8 75 8.377703 1.062459422

SRC, BLCAP, NNAT, FLJ42133, CTNNBL1, C20orf102, KIAA0406, C20orf77, TGM2, KIAA1755, BPI, LBP, KIAA1219, SMAF1, SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, MAFB, TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT, SFRS6, L3MBTL, SGK2, IFT52, MYBL2, FAM112A, C20orf100, JPH2, C20orf111, GDAP1L1, C20orf142, R3HDML, HNF4A, C20orf121, SERINC3, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35,

C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13, SPINT4 V_5136_LC19617_Wong et al. (2007), V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007) q11.23-q13.1220 44086132 45485732 RP11-373A15 RP11-674K9 12 1.3996 0.549346838 SLC12A5, NCOA5, CD40, CDH22, SLC35C2, ELMO2, ZNF334, SLC13A3, TP53RK, SLC2A10, EYA2, PRKCBP1 q13.1220 49119320 49661575 RP11-166O21 RP11-62M15 5 0.542255 0.663556452 NFATC2, ATP9A q13.13-q13.2

20 51647271 59253239 RP11-299C12 RP11-381C11 74 7.605968 1.775561826BCAS1, CYP24A1, PFDN4, DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C, BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1,

GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D, C20orf177, CDH26, FLJ33860, LOC284757 V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2-q13.33

22 14440103 15633802 CTD-2177M20 RP11-802G16 9 1.193699 0.691860514 ACTBL1, OR11H1, CESK1V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007), V_5165_LC20342_Wong

et al. (2007), V_5166_LC20342_Wong et al. (2007) q11.123 61987824 62832586 RP11-772H16 RP11-611B11 8 0.844762 0.519011202 LOC139886, ARHGEF9 V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) q11.1


1 773522 6587990 CTD-2200D4 RP11-58A11 47 5.814468 -0.909173882

SAMD11, NOC2L, KLHL17, PLEKHN1, HES4, ISG15, AGRN, C1orf159, TTLL10, TNFRSF18, TNFRSF4, SDF4, B3GALT6, C1QDC2, UBE2J2, SCNN1D, CENTB5, PUSL1, CPSF3L, MGC10334, TAS1R3, DVL1, MXRA8, AURKAIP1, CCNL2, MRPL20, VWA1, ATAD3C, ATAD3B, ATAD3A, SSU72, MIB2, MMP23B, CDC2L1, CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, LOC339457, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, ACTRT2, PRDM16, ARHGEF16, MEGF6,

FAM79A, WDR8, TP73, KIAA0495, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21

V_0001_LC0020_Iafrate et al. (2004), V_0002_LC0028_Iafrate et al. (2004), V_2042_LC0028_Locke et al. (2006), V_4192_LC0040_Wong et al. (2007), V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007),

V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007) p36.33-p36.31

1 11484934 12052974 CTD-2330M11 RP11-613L5 6 0.56804 -0.482486085 FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2, IIP45 p36.221 13202753 15231711 RP11-707I5 RP11-664N16 14 2.028958 -0.631978266 PRAMEF3, PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2, KIAA1026 V_0004_LC0152_Iafrate et al. (2004), V_0677_LC0152_Sharp et al. (2005), V_4206_LC0165_Wong et al. (2007) p36.211 17486898 19292308 RP11-261J13 RP11-306H4 17 1.80541 -0.603632119 PADI4, PADI6, RCC2, ARHGEF10L, ACTL8, IGSF21, KLHDC7A, PAX7, TAS1R2, ALDH4A1, ZUBR1 V_4213_LC0201_Wong et al. (2007) p36.134 39105 1316793 RP11-335H3 RP11-815M22 21 1.277688 -0.76400383 ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA V_2066_LC4068_Locke et al. (2006) p16.34 2126692 2779975 RP11-478C1 RP11-201O13 8 0.653283 -0.508567781 POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2 p16.34 4265942 7364917 RP11-658B7 RP11-620M13 31 3.098975 -0.798431363 OTOP1, TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2 V_2067_LC4192_Locke et al. (2006) p16.2-p16.14 8453821 8780507 RP11-435B13 RP11-1338A24 4 0.326686 -0.662594421 ACOX3, FLJ35725, FLJ45966, GPR78, CPZ V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007) p16.14 12833261 21733962 RP11-514A4 RP11-265J4 73 8.900701 -1.067720579 RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL, SLIT2, MGC29898, KCNIP4 V_4379_LC4291_Wong et al. (2007), V_4380_LC4361_Wong et al. (2007) p15.33-p15.314 22043111 27272156 RP11-681B24 RP11-705P18 49 5.229045 -0.545110466 GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721 V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007), V_4384_LC4441_Wong et al. (2007) p15.31-p15.24 30307325 31286263 RP11-619J20 RP11-478O20 12 0.978938 -2.341710798 PCDH7 p15.14 41324046 41648494 RP11-265K21 RP11-80M13 4 0.324448 -0.520455496 DKFZP686A012, PHOX2B, TMEM33 V_4391_LC4626_Wong et al. (2007) p13

4 52837735 120625711 RP11-693G18 RP11-708G15 521 67.787976 -0.903582258

EPHA5, CENPC1, BRDG1, UBE1L2, GNRHR, TMPRSS11D, TMPRSS11A, TMPRSS11F, CHR415SYT, TMPRSS11B, YTHDC1, UGT2B17, TMPRSS11E, UGT2B15, UGT2B10, UGT2A3, UGT2B7, UGT2B11, UGT2B28, UGT2B4, UGT2A1, SULT1B1, SULT1E1, CSN1S1, CSN2, STATH, HTN3, HTN1, LOC401137, APIN, C4orf7, CSN3, NYD-SP26, SMR3A, SMR3B, PROL1, MUC7, AMTN, AMBN, ENAM, IGJ, SAS10, RUFY3, GRSF1, MOBKL1A, DCK, SLC4A4, GC, NPFFR2, ADAMTS3, FLJ38991, ANKRD17, ALB, AFP, AFM, RASSF6, IL8, CXCL6, PF4V1,

CXCL1, PF4, PPBP, CXCL5, CXCL3, CXCL2, MTHFD2L, EPGN, EREG, AREG, BTC, DKFZP564O082, RCHY1, THAP6, FLJ23657, CDKL2, G3BP2, VDP, PPEF2, ASAHL, SDAD1, CXCL9, CXCL10, CXCL11, ART3, NUP54, SCARB2, GENX-3414, FLJ25770, SHROOM3, LOC345079, CCNI, CCNG2, CXCL13, CNOT6L, MRPL1, FRAS1, ANXA3, BMP2K, PAQR3, ARD1B, GK2, ANTXR2, PRDM8, FGF5, MGC35043, BMP3, PRKG2, RASGEF1B, HNRPD, HNRPDL, ENOPH1, FLJ12993, SCD5, SEC31A, SEC31L1, THAP9, DKFZp686L181, COPS4,

PLAC8, COQ2, HPSE, HEL308, MRPS18C, CCDC98, HMFN0839, NKX6-1, CDS1, WDFY3, ARHGAP24, MAPK10, PTPN13, SLC10A6, C4or

V_0047_LC5166_Iafrate et al. (2004), V_0048_LC5301_Iafrate et al. (2004), V_0049_LC5396_Iafrate et al. (2004), V_0701_LC4909_Sharp et al. (2005), V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006), V_4397_LC4723_Wong et al. (2007), V_4398_LC4750_Wong et al. (2007), V_4399_LC4933_Wong et al. (2007),

V_4401_LC5023_Wong et al. (2007), V_4402_LC5044_Wong et al. (2007), V_4405_LC5085_Wong et al. (2007), V_4406_LC5192_Wong et al. (2007), V_4407_LC5203_Wong et al. (2007), V_4408_LC5273_Wong et al. (2007), V_4409_LC5332_Wong et al. (2007), V_4411_LC5470_Wong et al. (2007), V_4587_LC5465_Wong et al. (2007) q12-q27

4 120975691 134636219 RP11-700N1 RP11-29M9 97 13.660528 -0.586145029MAD2L1, PRDM5, FLJ23191, TNIP3, GPR103, ANXA5, TMEM155, EXOSC9, CCNA2, BBS7, TRPC3, Tenr, IL2, IL21, FLJ35630, FGF2, NUDT6, SPATA5, SPRY1, ANKRD50, FAT4, PDZD6, SLC25A31, HSPA4L, PLK4, MGC33302, FLJ21106, LARP2, PGRMC2, PHF17, FLJ30655,

LOC132321, PCDH10V_0050_LC5522_Iafrate et al. (2004), V_4412_LC5587_Wong et al. (2007), V_4413_LC5596_Wong et al. (2007), V_4414_LC5605_Wong et al. (2007), V_4415_LC5607_Wong et al.

(2007) q27-q28.3

4 134918197 191137774 RP11-619K10 CTD-2011O21 472 56.219577 -1.209497966

PCDH18, SLC7A11, CCRN4L, ELF2, OSAP, NDUFC1, NARG1, RAB33B, SETD7, MGST2, MAML3, SCOC, CLGN, ELMOD2, UCP1, TBC1D9, RNF150, ZNF330, IL15, INPP4B, USP38, GAB1, SMARCA5, LOC441046, GYPE, GYPB, GYPA, HHIP, ANAPC10, ABCE1, OTUD4, SMAD1, MMAA, LOC646603, LOC152485, LSM6, SLC10A7, C4orf13, POU4F2, NYD-SP14, EDNRA, TMEM34, LOC90826, ARHGAP10, NR3C2, DCAMKL2, LRBA, MAB21L2, RPS3A, SH3D19, ESSPL, PET112L, FBXW7, FLJ32028, TIGD4, ARFIP1, KIAA1727, TRIM2, MND1, KIAA0922, TLR2, RNF175, SFRP2, DCHS2, PLRG1, FGB, FGA, FGG, LRAT, MGC27016, NPY2R, ASAP, GUCY1A3, GUCY1B3, ACCN5, TDO2, CTSO, PDGFC, GLRB, GRIA2, C4orf18, TMEM144, RXFP1, LOC201725, ETFDH, PPID, FLJ25371, FSTL5, LOC92345, NPY1R,

NPY5R, TKTL2, FLJ11184, ANP32C, TRIM61, FLJ31659, TRIM60, FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1, HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4, ASB5, SPCS3, VEGFC, NEIL3, AGA, ODZ3, DCTD, FLJ30277, WWC2, CDKN2AIP, ING2, RWDD4A, FLJ12716, STOX2, ENPP6, IRF2, CASP3, FLJ33167, MLF1IP, ACSL1, HELT, SLC25A4, SNX25,

LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2, TLR3, DKFZP564J102, CYP4V2, KLKB1, F11, MTNR1A, FAT, ZFP42, FLJ25

V_0051_LC5838_Iafrate et al. (2004), V_0052_LC5911_Iafrate et al. (2004), V_0053_LC5929_Iafrate et al. (2004), V_0054_LC6039_Iafrate et al. (2004), V_0057_LC6244_Iafrate et al. (2004), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006),

V_2076_LC5743_Locke et al. (2006), V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007), V_4418_LC5696_Wong et al. (2007), V_4419_LC5731_Wong et al. (2007), V_4420_LC5892_Wong et al. (2007), V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007), V_4423_LC6218_Wong et al. (2007),


5 72870653 82108815 RP11-323P5 RP11-218A6 115 9.238162 -0.571759119ANKRA2, UTP15, RGNEF, ENC1, HEXB, GFM2, TINP1, GCNT4, HMGCR, COL4A3BP, POLK, FLJ35779, SV2C, IQGAP2, F2RL2, F2R, F2RL1, S100Z, CRHBP, AGGF1, ZBED3, PDE8B, WDR41, OTP, TBCA, AP3B1, SCAMP1, LHFPL2, ARSB, DMGDH, BHMT2, BHMT, JMY,

HOMER1, PAPD4, CMYA5, MTX3, THBS4, SERINC5, SPZ1, ZFYVE16, UNQ9217, DP58, DHFR, MSH3, RASGRF2, CKMT2, ZCCHC9, ACOT12, SSBP2, ATG10, RPS23, LOC92270 V_0065_LC7090_Iafrate et al. (2004), V_4455_LC7036_Wong et al. (2007), V_4456_LC7103_Wong et al. (2007), V_4457_LC7105_Wong et al. (2007) q13.2-q14.26 170226739 170694314 RP11-294L23 RP11-57E19 6 0.467575 -0.815788539 DLL1, KIAA1838, PSMB1 V_4518_LC9057_Wong et al. (2007) q27

8 4789353 9287954 RP11-96P9 RP11-776B5 35 4.498601 -0.810012657CSMD1, MCPH1, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, LOC653600, DEFA3, DEFA5, PJCG6, DEFB104A, DEFB104B, DEFB107A, DEFB107B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, SPAG11, SPAG11A, DEFB103B, DEFB103A, DEFB4,

DEFB109, CLDN23, MFHAS1, THEX1, PPP1R3B

V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp et al. (2005), V_0739_LC10380_Sharp et al. (2005), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006),

V_2116_LC10380_Locke et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_4577_LC10380_Wong et al. (2007), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007), V_4581_LC10380_Wong et al. (2007) p23.2-p23.1

8 11543896 20676633 RP11-433O12 RP11-108E14 73 9.132737 -0.594847879GATA4, C8orf49, NEIL2, FDFT1, CTSB, DEFB137, DEFB136, DEFB134, DUB3, FAM86B1, DEFB130, LOC440053, LONRF1, C8orf79, KIAA1456, DLC1, SGCZ, TUSC3, MSR1, FGF20, EFHA2, ZDHHC2, CNOT7, VPS37A, MTMR7, SLC7A2, PDGFRL, MTUS1, FGL1, PCM1,

ASAH1, NAT1, NAT2, PSD3, SH2D4A, ChGn, INTS10, LPL, SLC18A1, ATP6V1B2, LZTS1

V_0116_LC10436_Iafrate et al. (2004), V_0740_LC10408_Sharp et al. (2005), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_2122_LC10408_Locke et al. (2006), V_2123_LC10460_Locke et al. (2006), V_4582_LC10408_Wong et al. (2007), V_4583_LC10408_Wong et al. (2007), V_4584_LC10408_Wong et al. (2007),

V_4585_LC10449_Wong et al. (2007) p23.1-p21.3

8 21742828 36724532 RP11-297H2 RP11-784L14 119 14.981704 -0.667216083

DOK2, XPO7, NPM2, FGF17, EPB49, RAI16, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2, SLC39A14, PPP3CC, SORBS3, PDLIM2, C8orf58, KIAA1967, BIN3, EGR3, PEBP4, RHOBTB2, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF10A, CHMP7, LOXL2, ENTPD4, SLC25A37, NKX3-1, STC1, ADAM28, ADAMDEC1, ADAM7, NEF3, NEFL, DOCK5, GNRH1, KCTD9, CDCA2, EBF2, PPP2R2A, BNIP3L, PNMA2, DPYSL2, ADRA1A, STMN4, TRIM35, PTK2B, CHRNA2, EPHX2, CLU, SCARA3, CCDC25, ESCO2, PBK, SCARA5,

ELP3, PNOC, ZNF395, FBXO16, FZD3, EXTL3, RC74, HMBOX1, KIF13B, DUSP4, TMEM66, LEPROTL1, DCTN6, RBPMS, GTF2E2, GSR, UBXD6, PPP2CB, TEX15, PURG, WRN, NRG1, FUT10, RBM13, C8orf41, RNF122, DUSP26, UNC5D V_4586_LC10461_Wong et al. (2007), V_4588_LC10475_Wong et al. (2007) p21.3-p12

9 70224827 127427572 RP11-151G22 RP11-513D3 543 57.202745 -1.398055399

C9orf65, LOC442425, VPS13A, GNA14, GNAQ, PSAT1, TLE4, TLE1, FLJ46321, RASEF, FRMD3, C9orf103, UBQLN1, GKAP1, KIF27, C9orf64, HNRPK, C9orf76, SLC28A3, NTRK2, AGTPBP1, MAK10, GOLPH2, C9orf153, HBLD2, ZCCHC6, GAS1, FLJ45537, DAPK1, CTSL1, HCTSL-s, C9orf79, CCRK, SPIN, C9orf121, C9orf47, EDG3, SHC3, CKS2, SECISBP2, LOC349236, SEMA4D, GADD45G, DIRAS2, SYK, AUH, NFIL3, ROR2, SPTLC1, IARS, NOL8, RP11-19J3.3, OGN, OMD, ASPN, ECM2, IPPK, BICD2, ANKRD19, ZNF484, FGD3, SUSD3, C9orf89, NINJ1, WNK2, C9orf10OS, C9orf10, PHF2, BARX1, PTPDC1, ZNF169, HIATL1, FBP2, FBP1, C9orf3, FANCC, PTCH1, LOC375748, C9orf102, HSD17B3, SLC35D2, ZNF367, HABP4, CDC14B, C9orf21, ZNF510, FLJ16636, FAM22G, CTSL2, ZNF322B, KIAA1529, TDRD7, TMOD1, C9orf97, NCBP1, XPA, FOXE1, C9orf156, HEMGN, ANP32B, NANS, TRIM14, CORO2A, TBC1D2, GABBR2, ANKS6, GALNT12, COL15A1, TGFBR1, ALG2, SEC61B, NR4A3, STX17, TXNDC4, INVS, TEX10, C9orf30, TMEFF1, LOC347273, PRG-3, BAAT,

MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2,

V_0129_LC11470_Iafrate et al. (2004), V_0131_LC11661_Iafrate et al. (2004), V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005), V_4642_LC11344_Wong et al. (2007), V_4643_LC11388_Wong et al. (2007), V_4644_LC11438_Wong et al. (2007), V_4645_LC11529_Wong et al. (2007), V_4646_LC11551_Wong et al. (2007),

V_4647_LC11560_Wong et al. (2007), V_4648_LC11560_Wong et al. (2007), V_4649_LC11564_Wong et al. (2007), V_4650_LC11572_Wong et al. (2007), V_4651_LC11606_Wong et al. (2007), V_4652_LC11661_Wong et al. (2007), V_4653_LC11698_Wong et al. (2007) q13-q33.3

11 79733306 88311943 RP11-353D10 RP11-257H22 70 8.578637 -1.82999252 MGC33846, PRCP, FLJ25416, RAB30, PCF11, ANKRD42, MDS025, DLG2, TMEM126B, TMEM126A, ZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5 V_0152_LC13403_Iafrate et al. (2004), V_4757_LC13394_Wong et al. (2007) q14.1-q14.311 95451287 95827973 RP11-111I14 RP11-588K5 6 0.376686 -0.455741229 MAML2, CCDC82, JRKL V_0154_LC13475_Iafrate et al. (2004) q2111 96346455 97725172 RP11-410D1 RP11-336J22 21 1.378717 -0.718931244 V_4760_LC13485_Wong et al. (2007) q21-q22.111 103803548 108416214 RP11-179B7 CTD-2130J18 36 4.612666 -0.633925791 CASP4, CASP5, CASP1, COP1, INCA, ICEBERG, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, LOC643923, SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10 V_0156_LC13530_Iafrate et al. (2004), V_4761_LC13567_Wong et al. (2007) q22.312 125484753 127389163 RP11-705H5 RP11-155L6 19 1.90441 -0.510690379 V_4793_LC14538_Wong et al. (2007) q24.32

13 17918020 75090598 RP11-77P19 RP11-129P9 493 57.172578 -0.948007342

TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3, FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1, B3GTL, RXFP2, FRY, BRCA2, CG018, PFAAP5, APRIN, KL, STARD13, RFC3, NBEA, MAB21L1, DCAMKL1, SOHLH2, SPG20, CCNA1, LOC400120, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4,

UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6, FOXO1A, MRPS31, SLC25A15, ELF1, WBP4, KBTBD6, KBTBD7, MTRF1, NARG1L, RGC32, KIAA0564, DGKH, AKAP11, TNFSF11, FLJ40919, EPSTI1, DNAJC15, PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13, CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11,

RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7, FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70, ATP7B, LOC

V_0167_LC14662_Iafrate et al. (2004), V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4797_LC14674_Wong et al. (2007), V_4798_LC14797_Wong et al. (2007), V_4799_LC14805_Wong

et al. (2007), V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong

et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4899_LC14682_Wong et al. (2007) q11-q22.2

13 93607483 102412238 RP11-339C1 RP11-127L23 80 8.804755 -0.74263136GPC6, DCT, TGDS, GPR180, SOX21, ABCC4, CLDN10, DZIP1, DNAJC3, UGCGL2, HS6ST3, OXGR1, MBNL2, RAP2A, RANBP5, FARP1, RNF113B, STK24, SLC15A1, DOCK9, PHGDHL1, GPR18, EBI2, TM9SF2, CLYBL, ZIC5, ZIC2, PCCA, TMTC4, VGCNL1, ITGBL1, FGF14,

TPP2, LOC196541, LOC93081, KDELC1, BIVM, ERCC5 V_4816_LC15155_Wong et al. (2007) q31.3-q33.113 103477793 104602141 RP11-727G7 RP11-654I8 8 1.124348 -0.853067331 q33.1-q33.2

13 105217625 114117194 RP11-111G22 RP11-228M6 68 8.899569 -1.161370204EFNB2, FLJ10154, LOC728215, LIG4, ABHD13, TNFSF13B, MYR8, IRS2, COL4A1, COL4A2, RAB20, FLJ10769, FLJ12118, ING1, ANKRD10, ARHGEF7, MGC35169, SOX1, C13orf28, TUBGCP3, FLJ26443, ATP11A, MCF2L, F7, F10, PROZ, FLJ11305, CUL4A, LAMP1, GRTP1,

ADPRHL1, DCUN1D2, TMCO3, TFDP1, ATP4B, GRK1, GAS6, FLJ41484, FAM70B, RASA3, CDC16, UPF3A, C13orf8V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007), V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007), V_0361_LC15215_Shaw-

Smith et al. (2004) q33.2-q3416 23463610 27132642 RP11-495E13 RP11-673P17 33 3.669032 -0.407530746 EARS2, KIAA1970, UBPH, NDUFAB1, PALB2, DCTN5, PLK1, ERN2, LOC63928, PRKCB1, CACNG3, RBBP6, FLJ45256, TNRC6A, SLC5A11, ARHGAP17, LCMT1, AQP8, ZKSCAN2, HS3ST4, TNT, JMJD5 V_4935_LC16781_Wong et al. (2007), V_4936_LC16785_Wong et al. (2007) p12.118 14572572 23304070 RP11-443M5 RP11-612A1 68 8.731498 -0.923035939 ROCK1, KIAA1772, ESCO1, SNRPD1, ABHD3, MIB1, GATA6, CTAGE1, RBBP8, CABLES1, C18orf45, RIOK3, C18orf8, NPC1, ANKRD29, LAMA3, C18orf17, CABYR, OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, KCTD1, AQP4, CHST9 V_5046_LC17976_Wong et al. (2007) p11.21-q12.1

18 26676737 76098439 RP11-798F18 RP11-565D23 463 49.421702 -0.917070432

FHOD3, C18orf10, KIAA1328, BRUNOL4, PIK3C3, RIT2, SYT4, SETBP1, SLC14A2, SLC14A1, CD33L3, KIAA1632, PSTPIP2, ATP5A1, CCDC5, C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, TCEB3C, TCEB3B, HDHD2, IER3IP1, SMAD2, ZBTB7C, KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH,

NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1, FBXO15, C18orf55, CYB5A, C18orf51, CNDP2, CNDP1, LOC400657, ZNF407, ZADH2, TSHZ1, LOC284274, ZNF236,

MBP, GALR1, SALL3, ATP9B, NFATC1, CTDP1, KCNG2, PQLC1, TXNL4A, C18orf22, KIAA0863, PARD6G

V_0216_LC18106_Iafrate et al. (2004), V_0217_LC18181_Iafrate et al. (2004), V_0218_LC18301_Iafrate et al. (2004), V_5050_LC18106_Wong et al. (2007), V_5052_LC18144_Wong et al. (2007), V_5053_LC18156_Wong et al. (2007), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_5056_LC18250_Wong et al. (2007),

V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007), V_5062_LC18530_Wong et al. (2007), V_5064_LC18537_Wong et al. (2007) q12.1-q23

19 33308354 63770533 RP11-722H20 CTD-2575K21 380 30.462179 -0.9119419

UQCRFS1, POP4, PLEKHF1, C19orf12, CCNE1, C19orf2, ZNF536, TSHZ3, ZNF507, MGC35440, DPY19L3, PDCD5, ANKRD27, RGS9BP, ECAT8, SLC7A9, FLJ14640, C19orf40, RHPN2, GPATC1, LOC126248, LRP3, SLC7A10, CEBPA, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, MGC13096, UBA2, WTIP, LOC284402, ZNF302, ZNF181, ZNF599, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467, ZD52F10,

SBSN, GAPDHS, NIFIE14, ATP4A, MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6, LOC148137, SNX26, PRODH2, NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565, ZNF146, KIAA1559, ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345, DKFZp779O175, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, EIF3S12, ACTN4, CAPN12, LGALS7, LOC653499, LGALS4, ECH1,

HNRPL, FLJ45909, SIRT2, NFKBIB, SARS2, MRPS12, FBXO17, FBXO27, FLJ16165, PAK4, LOC342897, SYCN, IL28B, IL28A, IL29, GMFG

V_0221_LC19039_Iafrate et al. (2004), V_0809_LC19144_Sharp et al. (2005), V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. (2006), V_2245_LC19036_Locke et al. (2006), V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et al. (2006), V_2248_LC19144_Locke et al. (2006), V_5097_LC18975_Wong et al. (2007),



V_5116_LC19144_Wong et al. (2007), V_5117_LC19144_Wong et al. (2007), V_5118_LC19144_Wong et al. (2007), V_5119_LC19144_Wong et al. (2007) q12-q13.4322 20105069 20625230 CTD-2295P14 RP11-791O24 5 0.520161 -0.495461676 HIC2, LOC220686, LOC375133, UBE2L3, LOC150223, FLJ36046, SDF2L1, PPIL2, YPEL1, MAPK1, PPM1F V_0817_LC20342_Sharp et al. (2005), V_2263_LC20342_Locke et al. (2006), V_2264_LC20342_Locke et al. (2006), V_5173_LC20342_Wong et al. (2007) q11.21-q11.22

22 21733737 26747513 RP11-61N10 RP11-736H16 41 5.013776 -0.716153878RTDR1, GNAZ, RAB36, BCR, FLJ31568, LOC388882, IGLL1, LOC51233, Rgr, ZNF70, VPREB3, C22orf15, C22orf16, MMP11, SMARCB1, DERL3, SLC2A11, MIF, LOC653689, LOC100037417, DDT, GSTT2, GSTT1, CABIN1, SUSD2, GGTLA1, KIAA0376, ADORA2A, UPB1,

C22orf13, SNRPD3, C22orf36, GGT1, PIWIL3, RUTBC2, bA9F11.1, CRYBB3, CRYBB2, LOC91353, LRP5L, ADRBK2, MYO18B, SEZ6L, ASPHD2, HPS4, LOC402055, TFIP11, TPST2, CRYBB1, CRYBA4, MN1, PITPNB

V_0235_LC20386_Iafrate et al. (2004), V_0688_LC20386_Sharp et al. (2005), V_0819_LC20395_Sharp et al. (2005), V_2029_LC20395_Urban et al (2006), V_2032_LC20386_Urban et al (2006), V_2033_LC20386_Urban et al (2006), V_2035_LC20386_Urban et al (2006), V_2036_LC20386_Urban et al (2006), V_2269_LC20395_Locke et al. (2006),

V_2270_LC20395_Locke et al. (2006), V_2271_LC20395_Locke et al. (2006), V_2272_LC20395_Locke et al. (2006), V_2273_LC20404_Locke et al. (2006), V_5179_LC20381_Wong et al. (2007), V_5180_LC20386_Wong et al. (2007) q11.22-q12.1

22 27425446 29076915 RP11-493M6 RP11-11B17 13 1.651469 -0.560722889 CHEK2, HSC20, FLJ33814, XBP1, HS747E2A, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RRP22, AP1B1, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UCRC, ASCC2, MTMR3, LOC400924, HORMAD2, LIF, OSM, LOC652968, TBC1D10A, SF3A1 q12.1-q12.222 30746679 34113688 RP11-810O6 RP11-316P10 33 3.367009 -0.754552552 LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28, BPIL2, FBXO7, SYN3, TIMP3, LARGE, RAXLX, HMG2L1, TOM1, HMOX1 V_5181_LC20466_Wong et al. (2007), V_5182_LC20466_Wong et al. (2007) q12.3

22 34652186 39162934 RP11-651L13 RP11-240D17 44 4.510748 -0.696980633

RBM9, APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB, NCF4, CSF2RB, MGC35206, TST, MPST, KCTD17, TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2, PSCD4, KIAA1904, MFNG, CARD10, CDC42EP1, LGALS2, GGA1, SH3BP1, PDXP, LGALS1, MGC3731, TRIOBP, H1F0, GCAT, GALR3, LOC129138, EIF3S6IP, MICAL-L1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF, C22orf5, CSNK1E, KCNJ4, KDELR3, DDX17, DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7, PDGFB, RPL3, SYNGR1, MAP3K7IP1, MGAT3, FLJ20232, ATF4, RPS19BP1, CACNA1I, FLJ25421, GRAP2, FAM83F, TNRC6B, ADSL, RUTBC3, MKL1

V_0237_LC20476_Iafrate et al. (2004), V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5183_LC20479_Wong et al. (2007), V_5184_LC20492_Wong et al. (2007), V_5185_LC20500_Wong et al. (2007), V_5186_LC20500_Wong et al. (2007), V_5187_LC20514_Wong et al. (2007) q12.3-q13.1

22 39242751 49518700 RP11-672F21 RP11-423E19 87 10.275949 -0.537326921

MKL1, MCHR1, SLC25A17, ST13, LOC63929, DNAJB7, RBX1, EP300, L3MBTL2, RANGAP1, ZC3H7B, TEF, TOB2, PHF5A, ACO2, POLR3H, CSDC2, PMM1, D15Wsu75e, XRCC6, NHP2L1, FLJ23584, MGC40042, FLJ22349, SREBF2, TNFRSF13C, C22orf18, MGC26816, NAGA, FAM109B, LOC91689, NDUFA6, CYP2D6, TCF20, NFAM1, SERHL, CGI-96, SERHL2, POLDIP3, CYB5R3, A4GALT, ARFGAP3, PACSIN2, TTLL1, BIK, MCAT, BZRP, TTLL12, SCUBE1, MPPED1, FLJ23588, SULT4A1, PNPLA5, ADPN, SAMM50, PARVB, PARVG,

LDOC1L, LOC388910, PRR5, LOC553158, ARHGAP8, PHF21B, NUP50, C22orf9, UPK3A, C22orf8, SMC1L2, RIBC2, FBLN1, ATXN10, WNT7B, FLJ10945, PPARA, LOC150383, PKDREJ, FLJ20699, GTSE1, TRMU, CELSR1, DIP, CERK, TBC1D22A, FLJ46257, LOC388915, FAM19A5, LOC348645, BRD1, ZBED4, ALG12, CRELD2, PIM3, FLJ41993, LOC164714, MLC1, MOV10L1, PANX2, PP2447, SELO, TUBGCP6, HDAC10, MAPK12, MAPK11, FAM116B, SAPS2, SBF1, ADM2, MIOX, BC002942, hCAP-H2, SCO2, ECGF1, LOC440836, KLHDC7B,

CPT1B, CHKB, MAPK8IP2, ARSA, SHANK3V_0239_LC20651_Iafrate et al. (2004), V_5188_LC20524_Wong et al. (2007), V_5189_LC20524_Wong et al. (2007), V_5190_LC20580_Wong et al. (2007), V_5191_LC20603_Wong

et al. (2007), V_5192_LC20651_Wong et al. (2007), V_5193_LC20651_Wong et al. (2007) q13.1-q13.33

23 550000 7482858 RP13-76L22 RP11-228K17 51 6.932858 -0.899210725 XG, GYG2, ARSD, ARSE, ARSH, ARSF, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS V_0362_LC20686_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005), V_2274_LC20665_Locke et al. (2006) p22.33-p22.31

23 17231639 45083260 RP11-80N6 RP11-643B24 260 27.851621 -0.992408404

NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444,

PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36 V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004) p22.13-p11.3

23 87985486 101335059 RP11-356O4 RP11-331E20 123 13.349573 -0.888331229TGIF2LX, PABPC5, PCDH11X, NAP1L3, RP1-32F7.2, DIAPH2, RPA4, PCDH19, TNMD, TSPAN6, SRPX2, SYTL4, CSTF2, NOX1, XKRX, ARL13A, CXorf34, TMEM35, FSHPRH1, DRP2, TAF7L, TIMM8A, BTK, RPL36A, GLA, HNRPH2, ARMCX1, ARMCX6, ARMCX3, ARMCX2,

NXF5, ZMAT1, TCEAL2, TCEAL6, NGFRAP1L1 V_0249_LC20974_Iafrate et al. (2004) q21.31-q22.123 105776495 106655359 RP11-647M7 RP11-772B13 7 0.878864 -0.608353567 CXorf57, RNF128, FLJ20298, CLDN2, MORC4, FLJ11016, FLJ20130, CXorf41 V_0251_LC21010_Iafrate et al. (2004) q22.323 108193545 114274420 RP11-349P8 RP11-528G12 57 6.080875 -0.800501385 GUCY2F, NXT2, KCNE1L, ACSL4, RP13-360B22., AMMECR1, RGAG1, CHRDL1, PAK3, CAPN6, DCX, ALG13, CXorf45, TRPC5, ZCCHC16, LHFPL1, AMOT, HTR2C, IL13RA2, LRCH2 q22.3-q23

23 115067494 121670287 RP11-517D11 RP11-487H22 67 6.602793 -0.777151251AGTR2, SLC6A14, LOC203413, KLHL13, WDR44, DOCK11, IL13RA1, ZCCHC12, LONRF3, PGRMC1, LOC203427, SLC25A5, CXorf56, UBE2A, NKRF, RPL39, UPF3B, RNF113A, NDUFA1, AKAP14, NKAP, OTEX, PEPP-2, ZBTB33, FAM70A, ATP1B4, LAMP2, CUL4B, MCTS1,

C1GALT1C1, CT47.7, CT47.1, CT47.5, CT47.10, CT47.11, CT47.2, CT47.3, CT47.4, CT47.8, CT47.9, CT47.6, GLUD2 q23-q2523 122410988 123284246 RP11-475E17 RP11-799O20 6 0.873258 -0.538826405 THOC2, BIRC4, STAG2 q2523 124628749 126667528 RP11-638C13 RP11-666A2 20 2.038779 -0.640047831 LOC340578, WDR40B V_0253_LC21091_Iafrate et al. (2004) q25

23 134810188 147024752 RP11-421I2 RP11-490M11 127 12.214564 -0.973583639SAGE1, TMEM32, SLC9A6, FHL1, GPR112, BRS3, HTATSF1, VGLL1, CD40LG, ARHGEF6, RBMX, GPR101, ZIC3, FGF13, F9, MCF2, ATP11C, LOC347487, SOX3, CDR1, SPANXB1, SPANXB2, LDOC1, SPANXC, SPANXA2, SPANXA1, SPANXD, SPANXE, MAGEC3, MAGEC1,

MAGEC2, SPANX-N4, SPANX-N3, SLITRK4, SPANX-N2, UBE2NL, SPANXN1, SLITRK2, CXorf1, FMR1, FMR1NB V_0255_LC21142_Iafrate et al. (2004), V_0827_LC21138_Sharp et al. (2005), V_2282_LC21138_Locke et al. (2006) q26.3-q2823 148142913 151041389 CTD-2275B16 RP11-269E9 26 2.898476 -1.058059767 IDS, CXorf40A, LW-1, FAM11A, MAGEA11, LOC728269, MAGEA9, MAGEA8, FLJ16423, CXorf40B, CXorf6, MTM1, MTMR1, CD99L2, HMGB3, GPR50, LOC203547, PASD1, PRRG3, FATE1, CNGA2, MAGEA4, GABRE, MAGEA5 q28

23 151445168 154753961 RP13-586H7 RP11-265K3 37 3.308793 -0.79741532

GABRQ, MAGEA6, MAGEA12, CSAG1, MAGEA2, MAGEA2B, CSAG3A, CSAG2, MAGEA3, CETN2, NSDHL, PNMA5, PNMA3, PNMA6A, MAGEA1, ZNF275, TREX2, UIP1, BGN, ATP2B3, FAM58A, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ, ATP6AP1, GDI1, FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG,

CTAG1A, CTAG1B, CTAG2, GAB3, DKC1, MPP1, F8, FUNDC2, MTCP1, CXorf53, VBP1, RAB39B, CLIC2, F8A1, F8A2, F8A3, H2AFB1, H2AFB3, H2AFB2, TMLHE V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q2824 482246 7400138 CTD-2584M8 RP11-556E10 56 6.917892 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y, PRKY V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands4 1685731 2176748 RP11-241P10 RP11-318G6 7 0.491017 0.658768155 TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN p16.34 2933091 3822605 RP11-705L9 RP11-1349H1 7 0.889514 0.996957075 C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) p16.3-p16.24 7323716 8099960 RP11-344F9 CTD-2104N3 3 0.776244 0.574164159 SORCS2, PSAPL1, AFAP1, ABLIM2 V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007) p16.14 10887779 12910580 RP11-518L6 RP11-5H11 16 2.022801 0.717495405 HS3ST1 p16.1-p15.334 36458182 37125348 RP11-774L17 RP11-268F12 6 0.667166 0.561899608 V_4389_LC4569_Wong et al. (2007) p144 38475441 39010637 RP11-753O11 RP11-135F22 4 0.535196 0.49616408 TLR1, TLR6, LOC92689, FLJ23235, KLHL5, WDR19, RFC1 p144 40511845 41435839 RP11-25G5 RP11-676K10 8 0.923994 0.606261764 APBB2, UCHL1, DKFZP686A012 V_4390_LC4615_Wong et al. (2007), V_4391_LC4626_Wong et al. (2007) p14-p134 41510828 42542635 RP11-638H6 RP11-479H2 8 1.031807 0.508509795 TMEM33, WDR21B, SLC30A9, CCDC4, LOC152573, ATP8A1 p134 42851168 45145353 RP11-752N15 RP11-709A12 18 2.294185 0.614077767 KCTD8, YIPF7, GUF1, GNPDA2 p136 161415603 162048857 RP11-271F3 RP11-658H22 6 0.633254 1.329973128 MAP3K4, AGPAT4, PARK2 q266 164025299 167586540 RP11-322N4 RP11-563F11 36 3.561241 0.698418896 C6orf118, PDE10A, LOC441177, T, MGC35308, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31 V_2098_LC9057_Locke et al. (2006), V_4516_LC9028_Wong et al. (2007), V_4517_LC9032_Wong et al. (2007) q26-q277 141560609 142034033 RP11-786A19 RP11-325O4 5 0.473424 0.719829625 TRY1 V_4563_LC10013_Wong et al. (2007), V_4564_LC10013_Wong et al. (2007), V_4565_LC10013_Wong et al. (2007), V_4566_LC10013_Wong et al. (2007) q34

11 63833554 64241785 RP11-618L10 RP11-141J21 3 0.408231 0.605559084 ESRRA, HSPC152, PRDX5, CCDC88, RPS6KA4, SLC22A11, SLC22A12, NRXN2 V_4752_LC13273_Wong et al. (2007) q13.1

11 68463939 71557998 RP11-622F5 RP11-92H23 32 3.094059 2.275493583IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76, DHCR7, NADSYN1, KRTAP5-7, KRTAP5-8, KRTAP5-9, KRTAP5-10, KRTAP5-11, FAM86C, DEFB108B, RNF121,

IL18BP, NUMA1, LRRC51, C11orf59, C11orf51, FOLR3 V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) q13.2-q13.411 74858960 75504565 RP11-563L9 RP11-424G5 7 0.645605 1.435967617 GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG q13.4-q13.511 76080268 76414814 RP11-386K9 RP11-259H21 3 0.334546 0.609378076 LRRC54, PHCA q13.511 89525798 91985590 RP11-475L23 RP11-398P23 22 2.459792 2.17666893 NAALAD2, CHORDC1 V_4759_LC13448_Wong et al. (2007) q14.311 94501910 95484320 RP11-613M7 RP11-205M24 7 0.98241 0.946784612 SESN3, FAM76B, CEP57, MTMR2, MAML2 q2111 95755456 96371975 RP11-8N17 RP11-73M4 6 0.616519 0.809942511 CCDC82, JRKL q2111 97627084 103700431 RP11-640M21 RP11-118J6 64 6.073347 2.347252094 CNTN5, TMEM133, PGR, TRPC6, ANGPTL5, KIAA1377, MGC13040, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, PDGFD, DDI1 V_0155_LC13522_Iafrate et al. (2004) q22.1-q22.311 108315200 110658613 RP11-743J15 RP11-263J6 16 2.343413 0.59996927 DDX10, LOC399947, RDX, FDX1, ARHGAP20, C11orf53 q22.3-q23.1

15 19116968 20094181 CTD-2155N19 RP11-123G4 6 0.977213 0.594261263 POTE15, OR4M2, OR4N4, LOC650137

V_0775_LC16090_Sharp et al. (2005), V_2180_LC16090_Locke et al. (2006), V_2182_LC16090_Locke et al. (2006), V_4863_LC16090_Wong et al. (2007), V_4865_LC16090_Wong et al. (2007), V_4866_LC16090_Wong et al. (2007), V_4867_LC16090_Wong et al. (2007), V_4868_LC16090_Wong et al. (2007), V_4869_LC16090_Wong et al. (2007),

V_4870_LC16090_Wong et al. (2007), V_4871_LC16090_Wong et al. (2007), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. (2007) q11.2

Gains

Losses


ES2

18 182061 575879 RP11-683J11 RP11-743O23 3 0.393818 0.802060084 USP14, THOC1, COLEC12, CETN1 V_5044_LC17825_Wong et al. (2007) p11.32

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands4 3414014 3822605 RP11-565K22 RP11-1349H1 5 0.408591 0.996957075 HGFAC, C4orf25, LRPAP1, ADRA2C V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) p16.26 161415603 162048857 RP11-271F3 RP11-658H22 6 0.633254 1.329973128 MAP3K4, AGPAT4, PARK2 q26

11 68463939 71201465 RP11-622F5 RP11-31I14 29 2.737526 2.275493583 IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76, DHCR7, NADSYN1, KRTAP5-7, KRTAP5-8, KRTAP5-9, KRTAP5-10, KRTAP5-11, FAM86C V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) q13.2-q13.411 90067196 91985590 RP11-230A5 RP11-398P23 19 1.918394 2.17666893 V_4759_LC13448_Wong et al. (2007) q14.311 98418657 103160803 RP11-120I1 RP11-652L13 51 4.742146 2.347252094 CNTN5, TMEM133, PGR, TRPC6, ANGPTL5, KIAA1377, MGC13040, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1 V_0155_LC13522_Iafrate et al. (2004) q22.1-q22.3


OVSAYO


1 40860040 43350316 RP11-644L15 RP11-281F19 20 2.490276 0.626474332RIMS3, NFYC, KCNQ4, CITED4, CTPS, FLJ23878, SCMH1, EDN2, HIVEP3, GUCA2B, GUCA2A, FOXJ3, FAM80A, ZMYND12, PPCS, LOC728621, PPIH, YBX1, CLDN19, LEPRE1, C1orf50, CCDC23, ERMAP,

ZNF691, SLC2A1 p34.2

1 48227310 53007168 RP11-655A1 RP11-452I17 35 4.779858 0.439015753SLC5A9, SPATA6, AGBL4, C1orf165, ELAVL4, FAF1, CDKN2C, RNF11, C1orf34, EPS15, OSBPL9, NRD1, RAB3B, TXNDC12, KTI12, BTF3L4, ZFYVE9, CC2D1B, ORC1L, PRPF38A, ZCCHC11, GPX7, MGC52498,

C1orf163, ZYG11B V_4223_LC0373_Wong et al. (2007), V_4224_LC0373_Wong et al. (2007), V_4225_LC0378_Wong et al. (2007) p33-p32.3

1 55481887 147979384 RP11-387E3 CTD-2288N2 696 92.497497 1.073585296

FLJ45337, PPAP2B, PRKAA2, C1orf168, C8A, C8B, DAB1, OMA1, TACSTD2, JUN, FLJ10986, HOOK1, CYP2J2, C1orf87, NFIA, TM2D1, INADL, ECAT11, ANKRD38, USP1, DOCK7, ANGPTL3, ATG4C, FOXD3, ALG6, ITGB3BP, KIAA1799, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, AK3L2, DNAJC6, LEPR, LEPROT, PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A, GNG12, DIRAS3, GPR177, RPE65, DEPDC1, LRRC7, LRRC40, SFRS11, ANKRD13C, HHLA3, CTH, PTGER3, ZNF265, NEGR1, FPGT, TNNI3K, C1orf173, CRYZ, C1orf171, LHX8, SLC44A5,

ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3, ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A, C1orf118, NEXN, FUBP1, DNAJB4, GIPC2, PTGFR, IFI44L, IFI44, LPHN2, TTLL7, PRKACB, SAMD13, DNASE2B, BXDC5, GNG5, SPATA1, CTBS, SSX2IP, EDG7, MCOLN2, MCOLN3, WDR63, C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, CLCA3, SH3GLB1, HS2ST1, LMO4,

PKN2, GTF2B, KAT3, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP5, GBP6, LRRC8B, LRRC8C, LRRC8D, ZNF326, BARHL2, ZNF644, HFM1, CDC7, TGFBR3, BRDT, ABHD7, BTBD8, C1orf146, GLMN, C1orf82, GFI1, EVI5, RPL5, FAM69A, MTF2, TMED5, CCDC18, DR1, FNBP1L, BCAR3, DNTTIP2, GCLM, AB

V_0008_LC0405_Iafrate et al. (2004), V_0009_LC0463_Iafrate et al. (2004), V_0010_LC0552_Iafrate et al. (2004), V_0011_LC0611_Iafrate et al. (2004), V_0012_LC0649_Iafrate et al. (2004), V_0013_LC0711_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_2049_LC0673_Locke et al. (2006), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_2052_LC0752_Locke et al. (2006), V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007), V_4229_LC0493_Wong et al. (2007), V_4230_LC0507_Wong et al. (2007), V_4231_LC0527_Wong et al. (2007), V_4232_LC0542_Wong et al. (2007), V_4233_LC0552_Wong et al. (2007), V_4234_LC0594_Wong et al. (2007), V_4235_LC0611_Wong et al. (2007), V_4236_LC0622_Wong et al. (2007), V_4237_LC0630_Wong et al. (2007), V_4238_LC0649_Wong et al. (2007), V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007),

V_4241_LC0680_Wong et al. (2007), V_4242_LC0704_Wong et al. (2007), V_4243_LC0729_Wong p32.3-q21.1

1 149849645 151842767 RP11-505C18 RP11-68O15 19 1.993122 1.026280369

SNX27, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN, LCE5A, C1orf42, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR,

PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4, S100A3, S100A2 q21.3

1 155146025 181045400 RP11-384J22 RP11-328I9 254 25.899375 0.734617622

PEAR1, C1orf92, ARHGEF11, FLJ16478, ETV3, FCRL5, FCRL4, FCRL3, FCRL2, FCRL1, CD5L, KIRREL, CD1D, CD1A, CD1C, CD1B, CD1E, OR10T2, OR10K2, OR10K1, OR10R2, OR6Y1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, IFI16, AIM2, IGSF4B, DARC, FCER1A, OR10J3, OR10J1, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, VSIG8, CCDC19, TAGLN2, IGSF9,

SLAMF9, PIGM, KCNJ10, KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1, PEA15, WDR42A, PEX19, COPA, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, ITLN2, F11R, USF1, ARHGAP30, PVRL4, KARCA1, PFDN2, NIT1, DEDD, UFC1, USP21, PPOX, B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, NR1I3, MPZ, SDHC, C1orf192, FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2, DUSP12, ATF6, OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52,

MGST3, ALDH9A1, TMCO1, UCK2, FAM78B, POGK, TADA1L, C1orf32, MAEL, GPA33, DUSP27, POU2F1, CD247, CREG1, RCSD1, MPZL1, SAC, BRP44, IQWD1, GPR161, TIPRL, SFT2D2, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BLZF1, C1orf114, SLC19A2, F5, SELP, SELL, SELE, C1orf156, C1orf112, SCYL3, KIF

V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007), V_4264_LC0975_Wong et al. (2007) q23.1-q25.3

1 181397838 198455660 RP11-175L1 RP11-526N3 138 17.057822 0.896252695

LAMC2, NMNAT2, SMG7, NCF2, ARPC5, RGL1, APOBEC4, GLT25D2, C1orf19, C1orf21, C1orf22, C1orf24, RNF2, C1orf25, C1orf26, IVNS1ABP, HMCN1, PRG4, TPR, C1orf27, OCLM, PDC, PTGS2, PLA2G4A, C1orf99, FAM5C, RGS18, RGS21, RGS1, RGS13, RGS2, UCHL5, TROVE2, GLRX2, CDC73, B3GALT2, KCNT2, CFH, CFHR3, CFHR1, CFHR4, CFHR2, CFHR5, F13B, ASPM, ZBTB41, CRB1, FLJ20054, DENND1B,

C1orf53, LHX9, NEK7, ATP6V1G3, PTPRC, NR5A2V_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al. (2006),


1 204607427 246944046 RP11-421E17 RP11-378I20 421 42.336619 1.307334919

SRGAP2, IKBKE, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CD46, CD34, PLXNA2, CAMK1G, LAMB3, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14, SERTAD4, HHAT, KCNH1, RCOR3, TRAF5, C1orf97, C1orf36, SLC30A1, NEK2, LPGAT1, INTS7, DTL, PPP2R5A, C1orf75, NENF, ATF3, FAM71A, SNFT,

C1orf48, TATDN3, LOC149643, FLVCR, FLJ12505, ANGEL2, RPS6KC1, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, LOC128153, RRP15, TGFB2, LYPLAL1, SLC30A10, EPRS, BPNT1, IARS2, RAB3GAP2, MARK1, C1orf115, MOSC2, MOSC1, HLX1, C1orf140, DUSP10, KIAA1822L, TAF1A, MIA3, C1orf80, C1orf58, FLJ43505, DISP1, TLR5, SUSD4, C1orf65, CAPN2, TP53BP2, FBXO28, DEGS1, NVL, CNIH4, WDR26, CNIH3, LBR, ENAH, SRP9, EPHX1, TMEM63A, LEFTY1, PYCR2, LEFTY2, C1orf55, H3F3A, ACBD3, MIXL1, LIN9, PARP1, C1orf95, ITPKB, PSEN2, CABC1, CDC42BPA, ZNF678, JMJD4, C1orf142, MPN2, WNT9A, WNT3A, ARF1, C1orf35, MRPL55, GUK1, GJA12, C1orf69, OBSCN, TRIM11, TRIM17, HIST3H3, HIST3H2A, HIST3H2BB, RHOU, RAB4A, SPHAR, C1orf96, ACTA1, NUP133,

V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006), V_2091_LC1120_Locke et al. (2006), V_4269_LC1125_Wong et al. (2007), V_4270_LC1176_Wong et al. (2007), V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et al. (2007) q32.1-q44

2 41662 10159361 CTD-2379H9 CTD-2016I16 85 10.117699 0.703010708SH3YL1, ACP1, LOC285016, TMEM18, SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC, SOX11, FLJ41046, LOC129607, RSAD2, RNF144, ID2, KIDINS220, OACT2, DDEF2,

ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11, CYS1 V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007) p25.3-p25.12 12254444 13415347 RP11-375P12 CTD-2127D13 9 1.160903 0.681686873 TRIB2 p25.1-p24.3

2 13850199 85038515 RP11-302F7 RP11-600J5 690 71.188316 1.015463562

FAM84A, NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3, GDF7, C2orf43, APOB, UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4, FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI,

MGC16372, OTOF, CIB4, KCNK3, C2orf18, CENPA, DPYSL5, MAPRE3, FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE, FOSL2, PLB1, PPP1CB,

SPDY1, FLJ20628, LOC165186, FLJ34931, RSNL2, ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH, SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A, CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC34824, ARL6IP2, HNRPLL, GALM, SFRS7, GEMIN6,

DHX57, SOS1, CDKL4, MAP4K3, MGC33926, THUMPD2, SLC8A1, LOC91461, EML4, COX7A2L, KCNG3, M

V_0018_LC1749_Iafrate et al. (2004), V_0019_LC1897_Iafrate et al. (2004), V_0020_LC1992_Iafrate et al. (2004), V_0689_LC1609_Sharp et al. (2005), V_4275_LC1625_Wong et al. (2007), V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et al. (2007), V_4282_LC1766_Wong et al. (2007), V_4283_LC1814_Wong et al. (2007), V_4284_LC1832_Wong et al. (2007), V_4285_LC1867_Wong et al. (2007), V_4286_LC1888_Wong et al. (2007), V_4287_LC1900_Wong et al. (2007), V_4288_LC1904_Wong et al. (2007), V_4289_LC1968_Wong et al. (2007), V_4290_LC1992_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007) p24.3-p11.2

2 85253802 120612421 CTD-2006H20 RP11-102L23 319 35.358619 1.584707306

TCF7L1, TGOLN2, RetSat, RBED1, CAPG, LOC284948, MAT2A, GGCX, VAMP8, VAMP5, LOC51255, TMEM150, FLJ90024, LOC388969, USP39, SFTPB, GNLY, ATOH8, ST3GAL5, POLR1A, FLJ20758, IMMT, MRPL35, REEP1, JMJD1A, VPS24, RNF103, FLJ13910, CD8A, CD8B, LOC285074, MGC4677, PLGLB2, PLGLB1, RGPD2, LOC51315, SMYD1, FABP1, FLJ10916, FLJ25369, EIF2AK3, RPIA, TEKT4, MAL, MRPS5,

ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A, TRIM43, LOC150763, ADRA2B, ASTL, DUSP2, STARD7, LOC285033, TMEM127, WDR39, ASCC3L1, KIAA1754L, BRRN1, LINCR, ARID5A, FLJ10081, LOC90342, LMAN2L, CNNM4, CNNM3, ANKRD23, ANKRD39, SEMA4C, LOC51252, DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B, ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A, MGC42367, TSGA10, C2orf15, LIPT1, LOC129531, MRPL30, LYG2, LOC129530, TXNDC9, EIF5B, REV1L, AFF3, LONRF2, CHST10, NMS, PDCL3, NPAS2, RPL31, C2orf29, RNF149, CREG2, MAP4K4, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294, POU3F3, MRPS9, GPR45, TGFBRAP1, MGC5509, FHL2, NCK2, ECRG4, UXS1, ST6GAL2, SLC5A7, SULT1C3, SULT1C1, SULT1C2, GCC2,

LIMS1, RANBP2, FLJ32745, EDAR, LOC729164, C2orf26, MALL, NPHP1, LIMS3, RGPD5, RGPD7, BUB1, A

V_0021_LC2111_Iafrate et al. (2004), V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp et al. (2005), V_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke et al. (2006), V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et al. (2007), V_4293_LC2035_Wong et al. (2007), V_4294_LC2035_Wong et al. (2007), V_4295_LC2046_Wong et al. (2007), V_4296_LC2046_Wong et al. (2007), V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al. (2007), V_4299_LC2057_Wong et al. (2007), V_4300_LC2064_Wong et al. (2007), V_4301_LC2072_Wong et al. (2007), V_4302_LC2081_Wong et al. (2007),

V_4303_LC2134_Wong et al. (2007), V_4304_LC2184_Wong et al. (2007), V_0373_LC2046_Bejjani et al. (2005) p11.2-q14.22 121815126 126983540 RP11-2M3 RP11-2M10 41 5.168414 1.040407904 CLASP1, MKI67IP, TSN, CNTNAP5 q14.2-q14.3

2 129399475 202459101 RP11-159J24 RP11-396E9 691 73.059626 0.92546804

RAB6C, CCDC74B, NSMASE3, FLJ14346, LOC112714, MGC12981, IMP4, PTPN18, CFC1, LOC653275, GPR148, FLJ38377, ARHGEF4, LOC130074, PLEKHB2, POTE2, LOC150786, H2-ALPHA, FAM128A, CCDC74A, FKSG30, C2orf27, MGC50273, FLJ41821, GPR39, LYPD1, NAP5, MGAT5, TMEM163, ACMSD, CCNT2, YSK4, RAB3GAP1, ZRANB3, R3HDM1, UBXD2, LCT, MCM6, DARS, CXCR4, THSD7B, HNMT,

LOC339745, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZFHX1B, ACVR2A, ORC4L, MBD5, EPC2, KIF5C, LOC130576, MGC52057, C2orf25, RND3, FLJ45645, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, ARL6IP6, RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, KIAA1189, PSCDBP, ACVR1C, ACVR1, UPP2, LOC130940, PKP4, LOC92196, TANC1, WDSUB1, BAZ2B, CD302, LY75, PLA2R1,

ITGB6, RBMS1, TANK, PSMD14, TBR1, SLC4A10, DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN, GRB14, COBLL1, FLJ39822, SCN3A, SCN2A2, TAIP-2, GALNT3, TTC21B, SCN1A, SCN9A, SCN7A, CMYA3, B3GALT1, STK39, LASS6, NOSTRIN, SPBC25, G6PC2, ABCB11, DHRS9, LRP2, BBS5, KBTBD10, FLJ21901, PPIG, PHOSPHO2, KLHL23, SSB, METTL5, ZNF650, MYO3B, LOC440925, SP5, GAD1, GORASP2,

TLK1, METTL8, C2orf37, CYBRD1, DYNC1I2, SLC25A12, HAT1, MAP1D, DLX1, DLX2, ITGA6, PDK1, RAPG

V_0024_LC2234_Iafrate et al. (2004), V_0025_LC2234_Iafrate et al. (2004), V_0027_LC2428_Iafrate et al. (2004), V_0028_LC2438_Iafrate et al. (2004), V_0029_LC2519_Iafrate et al. (2004), V_0693_LC2234_Sharp et al. (2005), V_4306_LC2234_Wong et al. (2007), V_4307_LC2234_Wong et al. (2007), V_4308_LC2246_Wong et al. (2007), V_4309_LC2319_Wong et al. (2007), V_4310_LC2333_Wong et al. (2007), V_4311_LC2333_Wong et al. (2007), V_4312_LC2343_Wong et al. (2007), V_4313_LC2352_Wong et al. (2007), V_4314_LC2392_Wong et al. (2007), V_4315_LC2398_Wong et al. (2007), V_4316_LC2400_Wong et al. (2007), V_4317_LC2405_Wong et al. (2007), V_4318_LC2416_Wong et al. (2007), V_4319_LC2466_Wong et al. (2007),

V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007), V_4322_LC2517_Wong et al. (2007), V_4323_LC2558_Wong et al. (2007) q14.3-q33.1

5 72312 132238302 RP11-811I15 RP11-252D24 1656 132.16599 1.147680064

KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4, IRX2, CEI, IRX1, ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2, DNAH5, TRIO,

FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10, BASP1, CDH18, CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN, FLJ11193, PDZD2, GOLPH3, MTMR12, ZFR, SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBL,

FLJ13231, NUP155, WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1, LOC389289, ZNF131, MGC42105, HMGCS1, CCL28, FLJ21657, FLJ32363, PAIP1, NNT, FGF10, MRPS30, LOC441070, HCN1, EMB, PARP8, ISL1, PELO, ITGA1, ITGA2, MOCS2, FST, NDUFS4, ARL15, HSPB3,

SNAG1, ESM1, GZMK, GZMA, FLJ37927, LOC493869, UNG2, DHX29, SKIV2L2, PPAP2A, FLJ90709, DDX4

V_0061_LC6634_Iafrate et al. (2004), V_0062_LC6809_Iafrate et al. (2004), V_0063_LC6852_Iafrate et al. (2004), V_0064_LC7017_Iafrate et al. (2004), V_0065_LC7090_Iafrate et al. (2004), V_0066_LC7143_Iafrate et al. (2004), V_0067_LC7505_Iafrate et al. (2004), V_0704_LC6379_Sharp et al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_0710_LC7017_Sharp et al. (2005), V_0711_LC7017_Sharp et al. (2005), V_0712_LC7231_Sharp et al. (2005), V_0713_LC7239_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_2082_LC6572_Locke et al. (2006), V_2083_LC6669_Locke et al. (2006), V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_2088_LC7017_Locke et al. (2006), V_2089_LC7017_Locke et al. (2006),

V_2090_LC7239_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong p15.33-q31.15 134625051 136394868 RP11-23D9 RP11-260I9 31 1.769817 0.365014229 H2AFY, C5orf20, NEUROG1, CXCL14, LOC153328, IL9, FBXL21, LECT2, TGFBI, SMAD5, TRPC7, SPOCK1 q31.1-q31.2

5 142105269 170072649 RP11-666E10 RP11-418L7 288 27.96738 0.771539152

ARHGAP26, NR3C1, HB-1, YIPF5, KCTD16, MGC21644, LOC643226, SH3RF2, PLAC8L1, LARS, POU4F3, TCERG1, GPR151, PPP2R2B, STK32A, DPYSL3, JAKMIP2, SPINK1, SCGB3A2, MGC23985, SPINK5, SPINK5L2, SPINK6, SPINK5L3, SPINK7, SPINK9, FBXO38, HTR4, ADRB2, SH3TC2, ABLIM3, FLJ36748, GRPEL2, MGC3265, IL17B, CSNK1A1, FLJ41603, PPARGC1B, PDE6A, SLC26A2, TIGD6, CSF1R, PDGFRB, CDX1, SLC6A7, CAMK2A, ARSI, TCOF1, CD74, RPS14, NDST1, SYNPO, MYOZ3, RBM22, DCTN4, MST150, ZNF300, GPX3, TNIP1, ANXA6, CCDC69, GM2A, SLC36A3, SLC36A2, SLC36A1, FAT2, SPARC, ATOX1,

G3BP, GLRA1, NMUR2, GRIA1, C5orf3, MFAP3, GALNT10, SAP30L, HAND1, LARP1, C5orf4, CNOT8, GEMIN5, MRPL22, SGCD, TIMD4, HAVCR1, HAVCR2, CRSP9, FAM71B, ITK, CYFIP2, MGC27121, ADAM19, SOX30, ICF45, LSM11, ENTH, EBF, FLJ31951, UBLCP1, IL12B, ADRA1B, TTC1, FABP6, CCNJL, C1QTNF2, LOC63920, SLU7, PTTG1, GABRB2, GABRA6, GABRA1, GABRG2, CCNG1, NUDCD2, HMMR, MAT2B,

ODZ2, WWC1, RARS, PANK3, SLIT3, CCDC99, DOCK2, FOXI1, LCP2, KCNMB1, KCNIP1 q31.3-q35.15 170231354 170518753 RP11-442K2 CTD-2012P21 3 0.287399 0.305824921 RANBP17 q35.15 172630700 174661133 RP11-664N12 RP11-141E23 29 2.030433 0.533160631 STC2, FAM44B, CPEB4, HMP19, MSX2 q35.2

7 7229099 43911336 RP11-394P22 RP11-343J6 354 36.682237 2.536435835

C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631, NDUFA4, PHF14, TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7, DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3,

TRA2A, LOC90693, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9, NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2, INMT,

FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16, PDE1C, LSM5, KIAA0241, LOC441208, KBTBD2, LOC441212, FKBP9, NT5C3, RP9, PTHB1, BMPER, AAA1, GPR154, TBX20, FLJ22313, KIAA1706, KIAA0895, ANLN, AOAH, ELMO1, GPR141, TXNDC3, SFRP4, EPDR1, STARD3NL, TARP, AMPH, VPS41, POU6F2, C7orf36, RALA, CDC2L5, C7orf11, C7orf10, INHBA, GLI3, C7orf25, PSMA2, MRPL32,

HECW1, STK17A, FLJ10803, BLVRA, MRPS24, URG4

V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_0719_LC9421_Sharp et al. (2005), V_2099_LC9264_Locke et al. (2006), V_4525_LC9277_Wong et al. (2007), V_4526_LC9320_Wong et al. (2007), V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007), V_4529_LC9384_Wong et al. (2007),

V_4530_LC9436_Wong et al. (2007), V_4531_LC9464_Wong et al. (2007) p21.3-p137 45294734 48734502 RP11-804G9 RP11-707O5 36 3.439768 0.59913265 ADCY1, IGFBP1, IGFBP3, LOC641980, TNS3, PKD1L1, FLJ21075, HUS1, SUNC1, UPP1, ABCA13 V_4533_LC9471_Wong et al. (2007), V_4534_LC9482_Wong et al. (2007), V_4535_LC9486_Wong et al. (2007) p13-p12.37 51790084 55387311 CTD-2135B6 RP11-708P5 31 3.597227 0.826759141 DKFZp564N247, FLJ45974, MGC33530, SEC61G, EGFR V_4537_LC9518_Wong et al. (2007) p12.1-p11.27 64068271 64921480 RP11-225E12 RP11-479O9 24 0.853209 0.523114034 ZNF117, ZNF92 V_0722_LC9554_Sharp et al. (2005), V_2101_LC9554_Locke et al. (2006) q11.21

7 71495965 72875615 RP11-359E24 RP11-100D10 24 1.37965 0.525278686 CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3 V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007) q11.22-q11.237 75960861 78669934 RP11-122A5 RP13-486L4 29 2.709073 0.388067376 DTX2, UPK3B, POMZP3, KIAA1505, FGL2, LOC54103, PTPN12, RSBN1L, TMEM60, PHTF2, MAGI2, MGC34774 V_0723_LC9631_Sharp et al. (2005) q11.23-q21.117 79037897 80756527 RP11-757A2 RP11-633A20 13 1.71863 0.536121238 GNAI1, CD36, SEMA3C q21.117 81159020 82508742 RP11-448A3 RP11-240I3 9 1.349722 0.501124014 HGF, CACNA2D1 q21.11

7 82580607 97174738 RP11-796P2 RP11-312C19 145 14.594131 0.677478045

SEMA3E, SEMA3A, SEMA3D, GRM3, KIAA1324L, DMTF1, C7orf23, CROT, ABCB4, ABCB1, RPIB9, MCFP, DBF4, ADAM22, SRI, STEAP4, FLJ32110, MGC26647, STEAP1, STEAP2, FLJ21062, DKFZP686A101, CLDN12, PFTK1, FZD1, MTERF, AKAP9, CYP51A1, LOC401387, KRIT1, GATAD1, PEX1, DKFZP564O052, MGC40405, CDK6, SAMD9, SAMD9L, LOC253012, FLJ20097, CALCR, TFPI2, GNGT1, GNG11, BET1,

COL1A2, CASD1, SGCE, PEG10, PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, DYNC1I1, SLC25A13, FLJ42280, SHFM1, DLX6, DLX5, ACN9 V_0105_LC9667_Iafrate et al. (2004), V_0106_LC9682_Iafrate et al. (2004), V_4546_LC9689_Wong et al. (2007) q21.11-q21.3

7 102251280 108564282 RP11-617P22 RP11-461P5 61 6.313002 0.678470272FBXL13, LRRC17, SVH, NAPE-PLD, FLJ36166, PMPCB, ZRF1, PSMC2, SLC26A5, RELN, ORC5L, LHFPL3, MLL5, SRPK2, PUS7, RINT1, ATXN7L4, FLJ23834, SYPL1, PBEF1, FLJ36031, PIK3CG, PRKAR2B, HBP1,

COG5, GPR22, DUS4L, BCAP29, SLC26A4, CBLL1, SLC26A3, DLD, LAMB1, LAMB4, NRCAM, IPLA2(GAMMA), THAP5, DNAJB9, LOC154907 V_4554_LC9806_Wong et al. (2007) q22.1-q31.1

7 108837065 124420804 RP11-325I9 RP11-550C15 131 15.583739 1.057735382

IMMP2L, LRRN3, DOCK4, ZNF277P, IFRD1, FLJ39575, FLJ13576, FLJ31818, GPR85, PPP1R3A, FOXP2, MDFIC, TFEC, TES, CAV2, CAV1, MET, CAPZA2, ST7, WNT2, ASZ1, CFTR, CTTNBP2, LSM8, ANKRD7, KCND2, TSPAN12, ING3, FLJ21986, WNT16, FAM3C, LOC392979, PTPRZ1, AASS, LOC389549, CADPS2, RNF133, RNF148, TAS2R16, SLC13A1, FLJ35834, NDUFA5, ASB15, WASL, HYAL4, SPAM1, LOC392982,

GPR37, POT1, LOC401398 V_0108_LC9826_Iafrate et al. (2004), V_4555_LC9863_Wong et al. (2007), V_4556_LC9887_Wong et al. (2007) q31.1-q31.337 126130514 127145121 RP11-475H14 RP11-568I11 10 1.014607 0.374421493 GRM8, LOC168850, GCC1, ARF5, FSCN3, PAX4, SND1 q31.33-q32.1

7 132349138 150134433 RP11-67O6 RP11-64C23 184 17.785295 0.719829625

CHCHD3, EXOC4, FLJ32786, SLC35B4, AKR1B1, AKR1B10, LOC441282, BPGM, CALD1, TMEM140, MGC5242, HSPC049, LOC346673, CNOT4, NUP205, SLC13A4, UNQ1940, MTPN, CHRM2, PTN, DGKI, CREB3L2, AKR1D1, TRIM24, LOC136306, ATP6V0A4, MGC14289, ZC3HAV1, TTC26, HSPC268, LUC7L2, FLJ44186, CLEC2L, HIPK2, TBXAS1, PARP12, KIAA1718, SLC37A3, RAB19B, MKRN1, DENND2A, ADCK2,NDUFB2, BRAF, MRPS33, LOC401410, MULK, KIAA1147, FLJ40852, SSBP1, TAS2R3, TAS2R4, TAS2R5, LOC136242, OR9A4, CLEC5A, TAS2R38, MGAM, TRY1, PRSS1, PRSS2, EPHB6, TRPV6, TRPV5, C7orf34,

KEL, OR9A2, OR6V1, PIP, TAS2R39, TAS2R40, GSTK1, TMEM139, CASP2, CLCN1, KIAA0773, FAM131B, ZYX, EPHA1, TAS2R60, TAS2R41, LOC441294, FLJ40722, KIAA0738, OR2F2, OR2F1, OR6B1, OR2A5, OR2A25, OR2A12, OR2A2, OR2A14, FLJ43692, OR2A7, OR2A1, OR2A42, ARHGEF5, NOBOX, TPK1, LOC402715, CNTNAP2, C7orf33, CUL1, EZH2, PDIA4, ZNF786, ZNF425, ZNF398, ZNF282, ZNF212, ZNF783, ZNF777, FLJ31413, FLJ12700, KRBA1, ZNF467, SSPO, LOC401431, ATP6V0E2L, LRRC61, C7orf29, RARRES2, REPIN1, ZNF775, LOC728743, GIMAP8, GIMAP7, GIMAP4, GIMAP6, GIMAP2, GIMAP1, GIMAP5,

LR8, HCA112

V_0110_LC10016_Iafrate et al. (2004), V_0725_LC10016_Sharp et al. (2005), V_0726_LC10016_Sharp et al. (2005), V_0727_LC10049_Sharp et al. (2005), V_0728_LC10049_Sharp et al. (2005), V_2107_LC10016_Locke et al. (2006), V_2108_LC10016_Locke et al. (2006), V_2109_LC10016_Locke et al. (2006), V_2110_LC10016_Locke et al. (2006), V_4562_LC9987_Wong et al. (2007), V_4563_LC10013_Wong et al. (2007), V_4564_LC10013_Wong et al. (2007), V_4565_LC10013_Wong et al. (2007), V_4566_LC10013_Wong et al. (2007), V_4567_LC10013_Wong et al. (2007), V_4568_LC10016_Wong et al. (2007), V_4569_LC10016_Wong et al. (2007), V_4570_LC10016_Wong et al. (2007), V_4571_LC10016_Wong et al. (2007), V_4572_LC10016_Wong et al. (2007),

V_4573_LC10016_Wong et al. (2007) q32.3-q36.17 151152629 152144780 RP11-796I2 RP11-452J20 10 0.992151 0.410017777 GALNTL5, GALNT11, MLL3, LOC155100, XRCC2, ACTR3B q36.1

9 38765151 70234204 RP11-73E13 RP11-211E19 51 31.469053 0.685599593 CNTNAP3, LOC642265, LOC727830, ZNF658, ZNF658B, ANKRD20A2, LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5

V_0742_LC11330_Sharp et al. (2005), V_0743_LC11344_Sharp et al. (2005), V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. (2006), V_2131_LC11330_Locke et al. (2006), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2140_LC11330_Locke et al. (2006),

V_2141_LC11344_Locke et al. (2006), V_2142_LC11330_Locke et al. (2006), V_2143_LC11330_Lo p13.1-q13

10 63259 18587258 RP11-631M21 RP11-56N8 153 18.523999 0.736704781

TUBB8, ZMYND11, DIP2C, LARP5, GTPBP4, IDI2, IDI1, WDR37, LOC399706, ADARB2, PFKP, PITRM1, KLF6, AKR1CL2, AKR1C1, AKR1C2, AKR1C3, AKR1CL1, AKR1C4, UCN3, TUBAL3, NET1, CALML5, CALML3, ASB13, GDI2, ANKRD16, FBXO18, IL15RA, IL2RA, RBM17, PFKFB3, PRKCQ, SFMBT2, ITIH5, ITIH2, KIN, ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2, USP6NL, ECHDC3, C10orf47, UPF2,

DHTKD1, SEC61A2, NUDT5, C10orf7, CAMK1D, CCDC3, OPTN, MCM10, C10orf49, PHYH, SEPHS1, C10orf30, PRPF18, FRMD4A, FAM107B, ARMETL1, HSPA14, SUV39H2, DCLRE1C, MEIG1, THEDC1, ACBD7, C10orf111, RPP38, NMT2, C10orf38, ITGA8, C10orf97, PTER, C1QL3, RSU1, CUBN, DNMT2, VIM, ST8SIA6, PTPLA, STAM, LOC340843, MRC1, MRC1L1, SLC39A12 V_4664_LC11931_Wong et al. (2007), V_4665_LC12095_Wong et al. (2007), V_4666_LC12101_Wong et al. (2007), V_4667_LC12118_Wong et al. (2007), V_4668_LC12124_Wong et al. (2007) p15.3-p12.33

10 19392957 69422391 RP11-2N7 RP11-654I24 486 50.029434 0.758248397

PLXDC2, NEBL, C10orf113, C10orf114, FLJ45187, MLLT10, DNAJC1, COMMD3, PCGF4, SPAG6, PIP5K2A, ARMC3, MSRB2, PTF1A, C10orf67, KIAA1217, ARHGAP21, PRTFDC1, C10orf63, THNSL1, GPR158, MYO3A, GAD2, APBB1IP, PDSS1, ABI1, ANKRD26, YME1L1, MASTL, ACBD5, LOC387646, PTCHD3, RAB18, IRXL1, ARMC4, MPP7, WAC, BAMBI, LYZL1, SVIL, PAPD1, MAP3K8, LYZL2, ZNF438, ZEB1,

ARHGAP12, KIF5B, EPC1, CCDC7, C10orf68, ITGB1, NRP1, PARD3, CUL2, CREM, C10orf9, CX40.1, FZD8, ANKRD30A, ZNF248, ZNF25, ZNF33A, ZNF37A, ZNF11B, BMS1L, RET, GALNACT-2, RASGEF1A, FXYD4, HNRPF, ZNF239, ZNF485, ZNF32, CXCL12, RASSF4, C10orf10, C10orf25, ZNF22, OR13A1, ALOX5, ANUBL1, FAM21C, CTGLF1, LOC594834, PDZK5B, SYT15, KIAA0514, PPYR1, ANXA8, LOC653107, ZNF488, RBP3, GDF2, GDF10, PTPN20A, PTPN20B, FRMPD2, MAPK8, ARHGAP22, LRRC18, C10orf72, C10orf71, LOC644168, ERCC6, PGBD3, SLC18A3, CHAT, C10orf53, OGDHL, PARG, CTGLF5, CTGLF4,

MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2, PCDH15, ZWINT, IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2, NRB

V_0136_LC12274_Iafrate et al. (2004), V_0763_LC12261_Sharp et al. (2005), V_0764_LC12274_Sharp et al. (2005), V_2152_LC12261_Locke et al. (2006), V_2153_LC12274_Locke et al. (2006), V_2154_LC12274_Locke et al. (2006), V_2155_LC12288_Locke et al. (2006), V_2156_LC12305_Locke et al. (2006), V_4670_LC12172_Wong et al. (2007), V_4671_LC12175_Wong et al. (2007), V_4672_LC12205_Wong et al. (2007), V_4673_LC12210_Wong et al. (2007), V_4674_LC12215_Wong et al. (2007), V_4675_LC12231_Wong et al. (2007), V_4676_LC12245_Wong et al. (2007), V_4677_LC12257_Wong et al. (2007), V_4678_LC12257_Wong et al. (2007), V_4679_LC12257_Wong et al. (2007), V_4680_LC12257_Wong et al. (2007), V_4681_LC12274_Wong et al. (2007), V_4682_LC12274_Wong et al. (2007), V_4683_LC12274_Wong et al. (2007), V_4684_LC12274_Wong et al. (2007), V_4685_LC12274_Wong et al. (2007), V_4686_LC12298_Wong et al. (2007), V_4687_LC12274_Wong et al. (2007), V_4688_LC12274_Wong et al. (2007), V_4689_LC12274_Wong et al. (2007), V_4690_LC12274_Wong et al. (2007), V_4691_LC12288_Wong et al. (2007),

V_4692_LC12288_Wong et al. (2007), V_4693_LC12288_Wong et al. (2007), V_4694_LC12333_W p12.33-q21.310 76785576 78899964 RP11-735L1 RP11-153F2 21 2.114388 0.609735466 LOC439985, ZNF503, C10orf11, KCNMA1 V_0138_LC12468_Iafrate et al. (2004), V_4703_LC12451_Wong et al. (2007) q22.2-q22.3

10 82593229 101952025 RP11-211J20 RP11-383K22 167 19.358796 0.781913281

NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1, WAPAL, OPN4, LDB3, BMPR1A, MMRN2, SNCG, C10orf116, GLUD1, FAM35A, MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1, PCGF5, HECTD2, PPP1R3C, TNKS2, FGFBP3, BTAF1,

CPEB3, IDE, KIF11, HHEX, EXOC6, CYP26C1, CYP26A1, FER1L3, CEP55, GPR120, RBP4, PDE6C, C10orf4, LGI1, TMEM20, PLCE1, NOC3L, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, C10orf129, PDLIM1, SORBS1, ALDH18A1, C10orf61, ENTPD1, C10orf130, CCNJ, ZNF518, BLNK, DNTT, TMEM10, TLL2, SMBP, PIK3AP1, LCOR, C10orf12, SLIT1, ARHGAP19, FRAT1, FRAT2, KIAA0690, PGAM1, EXOSC1, ZDHHC16, MMS19L, UBTD1, ANKRD2, C10orf65, C10orf62, C10orf83, PI4KII, AVPI1, ZFYVE27, SFRP5, C10orf132, CRTAC1, C10orf28, LOXL4, C10orf33, HPS1, HPSE2, CNNM1, GOT1, NKX2-3, SLC25A28, ENTPD7, COX15,

CUTC, ABCC2, DNMBP, CPN1, SPFH1, CHUKV_4705_LC12506_Wong et al. (2007), V_4706_LC12521_Wong et al. (2007), V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007), V_4709_LC12564_Wong et al. (2007),

V_4710_LC12569_Wong et al. (2007) q23.1-q24.2

10 105941789 132157685 RP11-653D19 RP11-139I20 239 26.215896 0.611983917

C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SORCS3, SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1, DUSP5, CSPG6, PDCD4, SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1, C10orf118, TDRD1, VWA2, KIAA1914, ABLIM1, KIAA1600, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3, PNLIP, PNLIPRP1, PNLIPRP2, C10orf82,

HSPA12A, KIAA1598, VAX1, KCNK18, SLC18A2, PDZD8, EMX2, RAB11FIP2, C10orf84, PRLHR, C10orf46, NANOS1, EIF3S10, FAM45A, FAM45B, SFXN4, PRDX3, GRK5, RGS10, TIAL1, BAG3, INPP5F, C10orf119, SEC23IP, PPAPDC1A, C10orf85, BRWD2, FGFR2, ATE1, C10orf86, TACC2, C10orf87, PLEKHA1, HTRA1, DMBT1, C10orf120, CUZD1, FAM24B, FAM24A, C10orf88, C10orf89, IKZF5, ACADSB, HMX2, BUB3,

GPR26, CPXM2, GALNAC4S-6ST, OAT, LHPP, FAM53B, LOC399818, KIAA0157, ZRANB1, CTBP2, C10orf137, MMP21, UROS, BCCIP, DHX32, FANK1, ADAM12, C10orf90, LOC728158, DOCK1, FLJ45557, NPS, FLJ46831, CLRN3, PTPRE, MKI67, MGMT, EBF3, TXNL2

V_0766_LC12664_Sharp et al. (2005), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007), V_4714_LC12735_Wong et al. (2007), V_4715_LC12747_Wong et al. (2007), V_4716_LC12779_Wong et al. (2007) q25.1-q26.3

11 71570233 80194218 RP11-138H23 RP11-355G10 72 8.623985 1.435967617

FOLR1, FOLR2, INPPL1, PHOX2A, CLPB, PDE2A, CENTD2, STARD10, ATG16L2, FCHSD2, P2RY2, P2RY6, ARHGEF17, TNFRSF19L, KIAA0280, PLEKHB1, RAB6A, MRPL48, CHCHD8, WDR71, DNAJB13, UCP2, UCP3, DKFZP586P012, PPME1, P4HA3, PGM2L1, KCNE3, MGC12965, POLD3, CHRDL2, LOC653566, SPCS2, NEU3, OR2AT4, SLCO2B1, ARRB1, RPS3, FLJ33790, GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG, WNT11, PRKRIR, C11orf30, LRRC32, LRRC54, PHCA, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1, AQP11, CLNS1A, HBXAP, PTD015, INTS4, KCTD14, THRSP, NDUFC2, ALG8, LOC283219, GAB2,

NARS2 V_0151_LC13373_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006), V_4727_LC13373_Wong et al. (2007) q13.4-q14.1

12 16595 5919344 RP13-492B24 RP11-570D10 56 5.902749 0.925754261IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2, DCP1B, CACNA1C, FKBP4, ITFG2, NRIP2, FOXM1,

C12orf32, TULP3, TEAD4, TSPAN9, PRMT8, MGC4266, PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B V_0161_LC13778_Iafrate et al. (2004), V_4765_LC13757_Wong et al. (2007), V_4766_LC13773_Wong et al. (2007) p13.33-p13.31

12 29021078 47322951 RP11-261K9 RP11-683J24 185 18.301873 0.628672813

MLSTD1, ERGIC2, OVCH1, TMTC1, IPO8, C1QDC1, TSPAN11, DDX11, OVOS2, FAM60A, MGC24039, MGC50559, LOC196394, LOC440093, C12orf35, BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2,

SFRS2IP, SLC38A1, SLC38A2, SLC38A4, AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA V_2170_LC13972_Locke et al. (2006), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007) p11.22-q13.11

12 57192371 59487665 RP11-782O11 RP13-598F7 31 2.295294 0.461192619 LRIG3, SLC16A7 q14.1

12 59665634 107853490 RP11-791E17 CTD-2155D19 477 48.187856 1.011322948

FAM19A2, USP15, MON2, C12orf61, AVPR1A, DPY19L2, TMEM5, SRGAP1, FLJ32549, XPOT, TBK1, RASSF3, GNS, WIF1, LEMD3, MSRB3, HMGA2, C12orf31, TMBIM4, IRAK3, HELB, GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B, NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, PSRC2, THAP2, TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1, PAWR, PPP1R12A,

FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1, NUDT4, UBE2N, MRPL42, SOCS2, CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT,

METAP2, USP44, NTN4, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, PCTK2, C12orf63, NEDD1, TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, TMEM16D, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM, CC

V_0165_LC14278_Iafrate et al. (2004), V_2171_LC14120_Locke et al. (2006), V_4774_LC14229_Wong et al. (2007), V_4781_LC14179_Wong et al. (2007), V_4782_LC14235_Wong et al. (2007), V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007), V_4785_LC14298_Wong et al. (2007), V_4786_LC14380_Wong et al. (2007) q14.1-q24.11

12 113042986 118621994 RP11-540B21 RP11-663G13 77 5.579008 0.455248299 TBX5, TBX3, THRAP2, FLJ42957, C12orf49, TMEM118, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2, RFC5, WSB2, FLJ20674, PEBP1, TAOK3, SUDS3, KIAA1853, HSPB8, CCDC60, PRKAB1, CIT V_4787_LC14460_Wong et al. (2007), V_4788_LC14466_Wong et al. (2007), V_4789_LC14468_Wong et al. (2007) q24.21-q24.2312 124185111 126532441 RP11-604N13 RP11-13D4 25 2.34733 0.482164606 AACS, TMEM132B V_4793_LC14538_Wong et al. (2007) q24.31-q24.32

14 18071243 19595839 RP11-404K10 CTD-2024K23 12 1.524596 0.53519584 OR11H12, POTE14, LOC440157, OR4Q3, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1, OR4K15, OR4K14, OR4K13

V_0812_LC15340_Sharp et al. (2005), V_2174_LC15340_Locke et al. (2006), V_2175_LC15340_Locke et al. (2006), V_2256_LC15340_Locke et al. (2006), V_4822_LC15340_Wong et al. (2007), V_4823_LC15340_Wong et al. (2007), V_4824_LC15340_Wong et al. (2007), V_4825_LC15340_Wong et al. (2007), V_4826_LC15340_Wong et al. (2007), V_4827_LC15340_Wong et al. (2007),

V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.217 40772510 41005728 RP11-345I14 RP11-798G7 3 0.233218 0.645980476 ARHGAP27, LOC201175, PLEKHM1 V_5010_LC17522_Wong et al. (2007) q21.31

17 42157798 44186865 RP11-360B17 RP11-600O7 21 2.029067 1.12781257NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1,

SNX11, SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13 V_0207_LC17522_Iafrate et al. (2004), V_0804_LC17530_Sharp et al. (2005), V_2229_LC17530_Locke et al. (2006), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007) q21.32

17 45651880 47544050 RP11-93L18 RP11-795H15 18 1.89217 1.29586747TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2, MBTD1, UTP18,

CA10 V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007) q21.33

17 48775310 60307163 RP11-577I13 RP11-307D16 140 11.531853 2.00166997

KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1,

CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2, MRC2, RNF190, CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2, GH2, CSH1, CSHL1, GH1, CD79B, SCN4A, ICAM2, ERN1, TEX2, PECAM1, POLG2, DDX5, CCDC45, SMURF2, FLJ34306

V_0210_LC17626_Iafrate et al. (2004), V_0805_LC17601_Sharp et al. (2005), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_4410_LC17595_Wong et al. (2007), V_5019_LC17572_Wong et al. (2007), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007),

V_5024_LC17631_Wong et al. (2007) q22-q24.1

17 60499372 65352100 RP11-169I9 RP11-266C8 49 4.852728 0.638244654RGS9, AXIN2, CCDC46, APOH, PRKCA, CACNG5, CACNG4, CACNG1, HELZ, PSMD12, PITPNC1, NOL11, BPTF, C17orf58, KPNA2, AMZ2, SLC16A6, ARSG, WIPI1, PRKAR1A, FAM20A, ABCA8, ABCA9, ABCA6,

ABCA10, ABCA5, MAP2K6 V_0806_LC17642_Sharp et al. (2005), V_2232_LC17640_Locke et al. (2006), V_5026_LC17636_Wong et al. (2007), V_5027_LC17640_Wong et al. (2007) q24.1-q24.317 65792228 69778937 CTD-2378E21 RP11-237E21 39 3.986709 0.527565482 SOX9, SLC39A11, SSTR2, COG1, FAM104A, C17orf80, CDC42EP4, SDK2, C17orf54, RPL38, TTYH2 V_5028_LC17688_Wong et al. (2007) q24.3-q25.1

17 72841495 76631200 RP11-338A22 RP11-387L10 43 3.789705 0.543854347FLJ45079, TNRC6C, TMC6, TMC8, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17, DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713, ENPP7, CBX2,

CBX8, CBX4, TBC1D16, GAA, DDX48, CARD14, SGSH, SLC26A11, KIAA1618, C17orf27, FLJ35220, NPTX1, KIAA1303, CHMP6, BAIAP2V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et al. (2006), V_5033_LC17737_Wong et al. (2007), V_5034_LC17743_Wong et al. (2007), V_5035_LC17750_Wong et al. (2007), V_5036_LC17763_Wong et al. (2007) q25.2-q25.3

18 17653 15399258 RP11-683L23 RP11-390I6 165 15.381605 1.157348441

USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3, TTMA, L3MBTL4, ARHGAP28, LAMA1, PTPRM, RAB12, KIAA0802, NDUFV2, ANKRD12, TWSG1, RALBP1, PPP4R1, RAB31, TXNDC2, VAPA, APCDD1, NAPG, FAM38B, GNAL, CHMP1B, MPPE1, IMPA2, CIDEA, TUBB6,

AFG3L2, C18orf43, SPIRE1, CEP76, TNFSF5IP1, PTPN2, SEH1L, CEP192, C18orf1, C18orf19, RNMT, MC5R, MC2R, ZNF519, MGC26718 V_2236_LC17918_Locke et al. (2006), V_5044_LC17825_Wong et al. (2007), V_5045_LC17914_Wong et al. (2007), V_5046_LC17976_Wong et al. (2007) p11.32-p11.21

20 37210 22642531 CTD-2506E2 RP11-473J15 203 22.605321 0.689686412

DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55, ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35, TGM3, TGM6, SNRPB, ZNF343, TMC2, NOL5A, IDH3B, CPXM, C20orf141, FAM113A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5, FLJ13149, ProSAPiP1, C20orf116, ITPA, SLC4A11, ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA, PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2, PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2, HAO1, TXNDC13, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, C20orf94, JAG1, BTBD3, SPTLC2L, TASP1, C20orf6, C20orf7, FLRT3, C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179, SNX5, C20orf72, OVOL2,

CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, C20orf26, INSM1, C20orf74, C20orf19, XRN2, NKX2-2, PAX1, FOXA2

V_0222_LC19227_Iafrate et al. (2004), V_0224_LC19418_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007), V_5121_LC19253_Wong et al. (2007), V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007), V_5125_LC19365_Wong et al. (2007),

V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et al. (2007) p13-p11.21

20 35702902 44008890 CTD-2320I12 RP11-103O9 75 8.305988 1.062459422

FLJ42133, CTNNBL1, C20orf102, KIAA0406, C20orf77, TGM2, KIAA1755, BPI, LBP, KIAA1219, SMAF1, SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, MAFB, TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT, SFRS6, L3MBTL, SGK2, IFT52, MYBL2, FAM112A, C20orf100, JPH2, C20orf111, GDAP1L1, C20orf142, R3HDML, HNF4A, C20orf121, SERINC3, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35, C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B,

WFDC13, SPINT4, WFDC3, DNTTIP1, UBE2C, TNNC2, C20orf161, SNX21, ACOT8, ZSWIM3, ZSWIM1, C20orf165, NEURL2, CTSA, PLTP, C20orf67 V_5136_LC19617_Wong et al. (2007), V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007) q11.23-q13.1220 47012618 47424572 RP11-144N5 CTD-2330F9 5 0.411954 0.8041508 ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, KCNB1 q13.1320 50050712 54484589 RP11-184L6 RP11-158O17 45 4.433877 1.775561826 ZFP64, TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4, DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43 V_0226_LC19822_Iafrate et al. (2004), V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2-q13.3120 56406060 56981929 RP11-75M7 RP11-699F6 4 0.575869 1.487707862 VAPB, FLJ90166, STX16, NPEPL1, GNAS q13.3222 14440103 14660949 CTD-2177M20 RP11-506K22 5 0.220846 0.691860514 ACTBL1 V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007), V_5165_LC20342_Wong et al. (2007) q11.1

chrom start end start.bac end.bac BACs length MB minM genes mirnas acgh.cnvs cytobands1 3278798 3710699 RP11-168F9 RP11-631K6 3 0.431901 -0.485233195 PRDM16, ARHGEF16, MEGF6, FAM79A, WDR8, TP73, KIAA0495, CCDC27, LRRC47 V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007) p36.321 6111938 7275303 RP11-715N23 RP11-185M23 10 1.163365 -0.708222138 CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1 V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007) p36.31-p36.23

1 7747096 13972273 RP11-620C9 RP11-649J6 52 6.225177 -0.605505768

CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC,NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP,

MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2, IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10, PRAMEF3, PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2

V_0003_LC0126_Iafrate et al. (2004), V_0004_LC0152_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005), V_0677_LC0152_Sharp et al. (2005), V_4204_LC0118_Wong et al. (2007), V_4205_LC0141_Wong et al. (2007), V_4403_LC0152_Wong et al. (2007) p36.23-p36.21

1 14984145 19778614 RP11-315J13 RP11-800L4 53 4.794469 -0.603632119

KIAA1026, FLJ43806, TMEM51, EFHD2, CTRC, ELA2A, ELA2B, CASP9, DNAJC16, AGMAT, DDI2, RSC1A1, SLC25A34, LOC388595, FBLIM1, SPEN, ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, C1orf117, EPHA2, ARHGEF19, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2, NBPF1, LOC440570, CROCC, MFAP2, ATP13A2, SDHB, PADI2, PADI1, PADI3, PADI4, PADI6, RCC2, ARHGEF10L, ACTL8, IGSF21,

KLHDC7A, PAX7, TAS1R2, ALDH4A1, ZUBR1, KIAA0090, MRT4, AFAR3, AKR7A3, AKR7A2, PQLC2, CAPZBV_0005_LC0177_Iafrate et al. (2004), V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007), V_4209_LC0177_Wong et al. (2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al. (2007), V_4213_LC0201_Wong et al. (2007) p36.21-p36.13

1 30827347 31297195 RP11-294J15 RP11-638H12 3 0.469848 -0.373013627 MATN1, LAPTM5, SDC3, PUM1 p35.21 33619543 34461293 RP11-433N19 RP11-26F12 7 0.84175 -0.387872393 ZNF31, CSMD2, HMGB4, C1orf94 p35.1-p34.3

1 35588067 38725549 RP11-745H3 RP11-329N22 32 3.137482 -0.425674383ZMYM4, KIAA0319L, NCDN, TFAP2E, PSMB2, FLJ38984, CLSPN, EIF2C4, EIF2C1, EIF2C3, TEKT2, ADPRHL2, COL8A2, TRAPPC3, RPRC1, THRAP3, C1orf113, C1orf78, STK40, LSM10, C1orf102, MRPS15,

CSF3R, GRIK3, ZC3H12A, C1orf149, SNIP1, DNALI1, GNL2, RSPO1, C1orf109, CDCA8, EPHA10, MANEAL, YRDC, C1orf122, MTF1, INPP5B, SF3A3, FHL3, UTP11L, POU3F1 V_0006_LC0305_Iafrate et al. (2004) p34.32 202350308 206105898 RP11-59N16 RP11-1I13 37 3.75559 -1.09040918 ALS2, ALS2CR7, FZD7, FLJ39061, SUMO1, NOP5/NOP58, BMPR2, ALS2CR13, ICA1L, WDR12, ALS2CR8, CYP20A1, ABI2, RAPH1, CD28, CTLA4, ICOS, PARD3B q33.1-q33.32 206410290 207666607 CTD-2011E17 RP11-594M1 13 1.256317 -0.480150679 FLJ20309, NDUFS1, EEF1B2, GPR1, ADAM23, MDH1B, KIAA0971, CPO, KLF7 q33.3

2 207884992 217281875 RP11-703O8 RP11-384M3 93 9.396883 -0.547610088CREB1, LOC151194, FLJ40432, FZD5, LOC389072, CRYGD, CRYGC, CRYGB, CRYGA, IDH1, PIP5K3, PTHR2, MAP2, C2orf21, RPE, FLJ23861, ACADL, MYL1, LANCL1, CPS1, ERBB4, IKZF2, SPAG16,

LOC402117, BARD1, ABCA12, ATIC, FN1, MREG, PECR, LOC92691, XRCC5, SMARCAL1, RPL37A, IGFBP2, IGFBP5 V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007), V_4326_LC2650_Wong et al. (2007) q33.3-q35

2 218596839 234289508 RP11-50E4 RP11-454F7 177 15.692669 -0.884821677

FLJ46536, IL8RB, IL8RA, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MGC50811, SLC11A1, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, WNT10A, CDK5R2, FEV, CRYBA2, DKFZp434O052, IHH, XLF, SLC23A3, C2orf24, C2orf17, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA1, DNAJB2, PTPRN, RESP18, DNPEP, DES, GMPPA, ACCN4, CHPF, MGC99813, OBSL1, INHA, STK11IP, SLC4A3, EPHA4, PAX3, FLJ32447, SGPP2, FARSLB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FLJ22746, CUL3, DOCK10, IRS1, RHBDD1, COL4A4, COL4A3, C2orf33, TM4SF20, HRB, DKFZp547H025, SLC19A3, CCL20, WDR69, FLJ20701, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, LOC93349, SP100, CAB39, ITM2C, GPR55, PSMD1,

HTR2B, ARMC9, B3GNT7, NCL, MGC43122, NMUR1, MGC35154, PTMA, PDE6D, COPS7B, NPPC, DIS3L2, ALPP, ALPPL2, ALPI, ECEL1, CHRND, CHRNG, TIGD1, EIF4E2, EFHD1, TNRC15, KCNJ13, UNQ830, NGEF, NEU2, INPP5D, ATG16L1, SAG, DGKD, USP40, UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, UGT1A5 V_0030_LC2686_Iafrate et al. (2004), V_4328_LC2702_Wong et al. (2007), V_4329_LC2749_Wong et al. (2007) q35-q37.1

2 241063271 241392414 RP11-27M15 CTD-2036A16 3 0.329143 -0.326348889 ANKMY1, LOC285193, RNPEPL1, CAPN10, GPR35, AQP12A, KIF1A q37.32 241866122 242750818 RP11-778F15 RP11-1159G17 7 0.884696 -0.422086747 HDLBP, FARP2, STK25, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, FLJ33590 V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4331_LC2814_Wong et al. (2007) q37.33 12796917 15109827 RP11-548H7 RP11-60M1 20 2.31291 -0.394114431 CAND2, RPL32, IQSEC1, NUP210, HDAC11, FBLN2, WNT7A, CHCHD4, TMEM43, XPC, LSM3, SLC6A6, GRIP2, C3orf19, C3orf20, FGD5, NR2C2, MRPS25, ZFYVE20 p25.1-p24.33 124093159 126222642 RP11-174G19 RP11-158P20 16 2.129483 -0.38152988 SEMA5B, PDIA5, SEC22A, ADCY5, PTPLB, MYLK, CCDC14, ROPN1, KALRN, UMPS, ITGB5, MUC13 q21.1-q21.23 127333435 128479573 RP11-323I23 RP11-784G10 10 1.146138 -0.338288409 ALDH1L1, KLF15, CCDC37, ZXDC, UROC1, CHST13, C3orf22, TR2IT1, CHCHD6, PLXNA1, C3orf56 q21.2-q21.3

3 184333258 186132598 RP11-92F2 RP11-158E3 18 1.79934 -0.530576922LAMP3, MCF2L2, B3GNT5, KLHL6, LOC389286, KLHL24, YEATS2, MAP6D1, PARL, ABCC5, HTR3D, HTR3C, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, ALG3, MGC2408, CAMK2N2, ECE2, PSMD2, EIF4G1, C3orf40,

CLCN2, POLR2H, THPO, CHRD, EPHB3, MAGEF1, VPS8 V_4364_LC3931_Wong et al. (2007), V_4365_LC3931_Wong et al. (2007) q27.1-q27.23 195818979 196325986 RP11-484I10 RP11-474O15 4 0.507007 -0.340176168 TMEM44, LSG1, FAM43A, C3orf21 V_2063_LC4020_Locke et al. (2006) q29

4 819328 2034086 RP11-141L5 RP11-262P20 13 1.214758 -0.76400383 GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478 p16.3

4 3414014 10373952 RP11-565K22 RP11-61G19 62 6.959938 -0.805462161

HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131, LOC650293, DRD5, SLC2A9, WDR1,

KIAA1729, MIST

V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007),

V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_Wong et al. (2007) p16.2-p16.14 39728431 41525425 RP13-940C21 RP11-227F19 23 1.796994 -0.5973792 N4BP2, RHOH, CHRNA9, FLJ20273, FLJ14001, APBB2, UCHL1, DKFZP686A012, PHOX2B V_4390_LC4615_Wong et al. (2007), V_4391_LC4626_Wong et al. (2007) p14-p134 48524364 52634443 RP11-19F13 RP11-61F5 18 4.110079 -0.868667936 OCIAD1, OCIAD2, FLJ21511, DCUN1D4, LOC339977, SGCB, SPATA18 V_2071_LC4709_Locke et al. (2006), V_4394_LC4709_Wong et al. (2007), V_4395_LC4720_Wong et al. (2007), V_4762_LC4709_Wong et al. (2007) p12-q124 190739374 191003342 RP11-792E2 RP11-652J12 3 0.263968 -0.409686362 V_0057_LC6244_Iafrate et al. (2004), V_4425_LC6244_Wong et al. (2007) q35.2

8 86620595 86898973 RP11-509F16 RP11-13P8 5 0.278378 -0.635823436 REXO1L1V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007),

V_4604_LC10727_Wong et al. (2007), V_4605_LC10727_Wong et al. (2007) q21.28 139637734 139958175 RP11-76C2 RP13-980P9 4 0.320441 -0.444964527 COL22A1 q24.238 140611780 141191483 RP11-166A8 RP11-698K13 4 0.579703 -0.334890261 KCNK9, NIBP q24.38 142202743 143224451 RP11-74F7 RP11-178N19 5 1.021708 -0.480581916 DENND3, SLC45A4, GPR20, PTP4A3, FLJ43860 q24.3

9 100914806 118370971 RP11-734K7 RP11-488L10 171 17.456165 -1.108937541

TGFBR1, ALG2, SEC61B, NR4A3, STX17, TXNDC4, INVS, TEX10, C9orf30, TMEFF1, LOC347273, PRG-3, BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FCMD, TAL2, TMEM38B, ZNF462, RAD23B, KLF4, ACTL7B, ACTL7A, IKBKAP, C9orf6, CTNNAL1,

C9orf5, C9orf4, EPB41L4B, PTPN3, PALM2, PALM2-AKAP2, AKAP2, C9orf152, TXN, TXNDC8, SVEP1, MUSK, EDG2, OR2K2, KIAA0368, ZNF483, LTB4DH, bA16L21.2.1, LOC552891, GNG10, C9orf84, UGCG, SUSD1, ROD1, HSDL2, KIAA1958, C9orf80, TSCOT, ZFP37, SLC31A2, SLC31A1, CDC26, PRPF4, RNF183, WDR31, BSPRY, HDHD3, ALAD, POLE3, C9orf43, RGS3, ZNF618, AMBP, KIF12, COL27A1, ORM1,

ORM2, AKNA, DFNB31, ATP6V1G1, C9orf91, TNFSF15, TNFSF8, TNC, PAPPA, ASTN2 V_0131_LC11661_Iafrate et al. (2004), V_4649_LC11564_Wong et al. (2007), V_4650_LC11572_Wong et al. (2007), V_4651_LC11606_Wong et al. (2007), V_4652_LC11661_Wong et al. (2007) q22.33-q33.1

9 119669045 127759532 RP11-619F14 RP11-638B2 83 8.090487 -0.612958826

DBC1, CDK5RAP2, MEGF9, FBXW2, PSMD5, PHF19, TRAF1, C5, CEP110, RAB14, GSN, STOM, DAB2IP, TTLL11, NDUFA8, C9orf18, LHX6, RBM18, MRRF, PTGS1, OR1J1, OR1J2, OR1J4, OR1N1, OR1N2, OR1L8, OR1Q1, OR1B1, OR1L1, OR1L3, OR1L4, OR1L6, OR5C1, OR1K1, PDCL, MNAB, ZBTB6, ZBTB26, RABGAP1, GPR21, STRBP, CRB2, DENND1A, LHX2, NEK6, PSMB7, NR5A1, NR6A1, OLFML2A,

LOC401551, RPL35, ARPC5L, GOLGA1, C9orf126, PPP6C, RABEPK, HSPA5, GAPVD1, MAPKAP1, PBX3 V_4653_LC11698_Wong et al. (2007) q33.1-q33.3

9 128518738 129731181 RP11-809E4 RP11-228B15 13 1.212443 -0.685281021 ZNF297B, RALGPS1, ANGPTL2, GARNL3, SLC2A8, ZNF79, RPL12, LRSAM1, C9orf88, STXBP1, C9orf117, PTRH1, TTC16, TOR2A, SH2D3C, CDK9, FPGS, ENG, AK1, ST6GALNAC6, ST6GALNAC4, PIP5KL1 V_4654_LC11759_Wong et al. (2007), V_4655_LC11759_Wong et al. (2007), V_4656_LC11759_Wong et al. (2007) q33.3-q34.11

9 129896705 131151714 CTD-2220M13 RP11-474N7 11 1.255009 -0.505953492SLC25A25, PTGES2, LCN2, C9orf16, CIZ1, DNM1, GOLGA2, TRUB2, COQ4, SLC27A4, C9orf74, CEECAM1, ODF2, GLE1L, SPTAN1, WDR34, SET, PKN3, ZDHHC12, ZYG11BL, TBC1D13, ENDOG, C9orf114,

CCBL1, LRRC8A, PHYHD1, TMEM15, NUP188, SH3GLB2, FAM73B, DOLPP1, CRAT, PPP2R4, IER5L, C9orf106 q34.11

9 131452575 135740561 RP11-5J2 RP11-502G12 40 4.287986 -0.567310803

PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, GPR107, FLJ46836, FREQ, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, P518, FIBCD1, LAMC3, C9orf58, NUP214, FAM78A, PPAPDC3, POMT1, UCK1, RAPGEF1, CRSP8, NTNG2, SETX, TTF1, FLJ46082, BARHL1, DDX31, GTF3C4, C9orf98, C9orf9, TSC1, GFI1B, GTF3C5, CEL, RALGDS, GBGT1, OBP2B, ABO, SURF6, SURF5, RPL7A, SURF1, SURF2, SURF4,

C9orf96, REXO4, ADAMTS13, C9orf7, SLC2A6, LOC389827, ADAMTSL2, LOC642968, DBH, SARDH, VAV2 V_0132_LC11835_Iafrate et al. (2004), V_4657_LC11835_Wong et al. (2007), V_4658_LC11835_Wong et al. (2007) q34.11-q34.2

9 137111874 140237228 RP11-399H11 RP11-668B20 22 3.125354 -0.671939468

OLFM1, KIAA0649, C9orf116, MRPS2, LCN1, OBP2A, PAEP, GLT6D1, LCN9, SOHLH1, KCNT1, CAMSAP1, UBADC1, BTBD14A, LHX3, QSOX2, GPSM1, LOC728489, CARD9, SNAPC4, SDCCAG3, PMPCA, INPP5E,KIAA0310, FLJ36779, NOTCH1, EGFL7, AGPAT2, FAM69B, LCN10, LCN6, LCN8, UNQ2541, MGC14141, KIAA1984, C9orf86, LOC389813, PHPT1, MAMDC4, EDF1, TRAF2, FBXW5, C8G, LCN12, PTGDS, FLJ45224, C9orf142, CLIC3, ABCA2, FLJ36268, FUT7, NPDC1, ENTPD2, C9orf140, UAP1L1, MAN1B1, DPP7, GRIN1, LOC389816, ANAPC2, SSNA1, C9orf75, MGC14327, NDOR1, LOC727800, MGC59937,

SLC34A3, TUBB2C, LOC401565, LOC441476, COBRA1, FLJ20245, MGC61598, FLJ20433, NOXA1, ENTPD8, NELF, C9orf111, MRPL41, WDR85, ZMYND19, ARRDC1, C9orf37, EHMT1, FLJ40292, CACNA1B V_0133_LC11864_Iafrate et al. (2004), V_0134_LC11864_Iafrate et al. (2004), V_4661_LC11864_Wong et al. (2007), V_4662_LC11864_Wong et al. (2007), V_4663_LC11864_Wong et al. (2007) q34.311 68519158 70580986 RP11-554A11 CTD-2505C3 23 2.061828 -0.809167587 MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76 V_4755_LC13316_Wong et al. (2007) q13.2-q13.3

11 80121515 97315561 RP11-423C22 RP11-92J21 153 17.194046 -1.82999252

MGC33846, PRCP, FLJ25416, RAB30, PCF11, ANKRD42, MDS025, DLG2, TMEM126B, TMEM126A, ZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5, TYR, NOX4, PSMAL, TRIM49, NAALAD2, CHORDC1, MTNR1B, SLC36A4, CCDC67, C11orf75, JOSD3, C11orf54, CRSP6, PANX1, LOC390243, GPR83, MRE11A, ANKRD49, FUT4, PIWIL4, AMOTL1,

HSPC148, JMJD2D, SFRS2B, SESN3, FAM76B, CEP57, MTMR2, MAML2, CCDC82, JRKLV_0152_LC13403_Iafrate et al. (2004), V_0154_LC13475_Iafrate et al. (2004), V_4757_LC13394_Wong et al. (2007), V_4758_LC13426_Wong et al. (2007), V_4759_LC13448_Wong et al. (2007),

V_4991_LC13460_Wong et al. (2007) q14.1-q22.1

11 97504973 110371010 RP11-738H19 RP11-234B23 116 12.866037 -0.633925791

CNTN5, TMEM133, PGR, TRPC6, ANGPTL5, KIAA1377, MGC13040, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, PDGFD, DDI1, CASP4, CASP5, CASP1, COP1, INCA, ICEBERG, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, LOC643923, SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM,

C11orf65, KDELC2, EXPH5, DDX10, LOC399947, RDX, FDX1, ARHGAP20 V_0155_LC13522_Iafrate et al. (2004), V_0156_LC13530_Iafrate et al. (2004), V_4760_LC13485_Wong et al. (2007), V_4761_LC13567_Wong et al. (2007) q22.1-q23.111 110816635 112149329 RP11-542P14 RP11-801N2 10 1.332694 -0.58029718 BTG4, FLJ46266, LAYN, SNF1LK2, PPP2R1B, ALG9, C11orf1, CRYAB, HSPB2, C11orf52, DIXDC1, DLAT, PIH1D2, C11orf57, TIMM8B, SDHD, IL18, TEX12, BCDO2, PTS q23.111 112430501 114322195 RP11-46K15 RP11-796G18 14 1.891694 -0.588995672 NCAM1, TTC12, ANKK1, DRD2, TMPRSS5, ZW10, USP28, HTR3B, HTR3A, ZBTB16, NNMT, C11orf71, RBM7, REXO2, FAM55A, FAM55D, FAM55B V_0158_LC13592_Iafrate et al. (2004), V_4763_LC13589_Wong et al. (2007) q23.1-q23.211 115294553 117485983 RP11-775J8 RP11-36O11 18 2.19143 -0.757982544 BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, KIAA0999, PAFAH1B2, SIDT2, TAGLN, PCSK7, DKFZp547C195, BACE1, CEP164, DSCAML1, FXYD2, FXYD6, TMPRSS13, IL10RA, TMPRSS4 V_0159_LC13605_Iafrate et al. (2004) q23.2-q23.3

11 117628559 118892547 RP11-30E1 RP11-135D15 11 1.263988 -0.616500745EVA1, CD3E, CD3D, CD3G, UBE4A, ATP5L, MLL, FLJ11783, LOC143941, TMEM25, C11orf60, ARCN1, PHLDB1, TREH, DDX6, BLR1, BCL9L, UPK2, FOXR1, CCDC84, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11,

HMBS, H2AFX, DPAGT1, TMEM24, MIZF, ABCG4, NOD9, PDZD3, LOC283152, CBL, MCAM, RNF26, C1QTNF5, MFRP, USP2, THY1 q23.3

11 119108626 125500535 RP11-395H23 RP11-152P4 55 6.391909 -0.7652878

TRIM29, OAF, POU2F3, TMEM136, ARHGEF12, GRIK4, LRRC35, TECTA, SC5DL, SORL1, BRCC2, STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN,

VSIG2, ESAM, C11orf61, ROBO3, ROBO4, HEPACAM, HEPN1, CCDC15, SLC37A2, LOC219854, PKNOX2, FEZ1, EI24, STT3A, CHEK1, ACRV1, PATE, C11orf38, HYLS1, PUS3, DDX25, CDON V_5037_LC13656_Wong et al. (2007) q23.3-q24.2

Gains

Losses

OVSAYO

11 126559530 127661642 RP11-281D23 RP11-702B10 8 1.102112 -0.671593723 q24.2-q24.311 129244577 131149208 RP11-45D6 RP11-340L13 20 1.904631 -0.828651918 NFRKB, PRDM10, APLP2, ST14, BTBD15, ADAMTS8, ADAMTS15, C11orf44, SNX19 q24.3-q2511 131298148 131902761 RP11-696O8 RP11-715K7 5 0.604613 -0.730152328 HNT, OPCML q2511 133372260 134436732 RP11-107G18 CTD-2220K2 18 1.064472 -0.763755771 JAM3, hCAP-D3, VPS26B, THYN1, ACAD8, GLB1L3, LOC89944, B3GAT1 V_4764_LC13705_Wong et al. (2007) q25

13 17918020 114117194 RP11-77P19 RP11-228M6 811 96.199174 -1.161370204

TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3, FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1, B3GTL, RXFP2, FRY, BRCA2,

CG018, PFAAP5, APRIN, KL, STARD13, RFC3, NBEA, MAB21L1, DCAMKL1, SOHLH2, SPG20, CCNA1, LOC400120, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6, FOXO1A, MRPS31, SLC25A15, ELF1, WBP4, KBTBD6, KBTBD7, MTRF1, NARG1L, RGC32, KIAA0564, DGKH, AKAP11, TNFSF11, FLJ40919, EPSTI1, DNAJC15,

PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13, CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RC

V_0167_LC14662_Iafrate et al. (2004), V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4797_LC14674_Wong et al. (2007), V_4798_LC14797_Wong et al. (2007), V_4799_LC14805_Wong et al. (2007), V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007),

V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007), V_4899_LC14682_W q11-q3414 64135811 64415593 RP11-3I6 RP11-700L24 3 0.279782 -0.307310567 PLEKHG3, SPTB q23.3

14 65537017 69440807 RP11-655F20 RP11-72J8 33 3.90379 -0.329218288MGC88374, GPHN, C14orf54, MPP5, ATP6V1D, EIF2S1, PLEK2, C14orf83, PLEKHH1, PIGH, ARG2, VTI1B, RDH11, RDH12, ZFYVE26, RAD51L1, ZFP36L1, FLJ39779, ACTN1, WDR22, EXDL2, GALNTL1, ERH,

SLC39A9, C14orf162, KIAA0247, SFRS5, SLC10A1, SMOC1 V_4838_LC15719_Wong et al. (2007) q23.3-q24.2

14 75769596 78384279 CTD-2532G3 RP11-39F22 21 2.614683 -0.404667915ESRRB, VASH1, ANGEL1, C14orf166B, C14orf4, KIAA1737, ZDHHC22, TMEM63C, NGB, POMT2, GSTZ1, TMED8, C14orf174, C14orf148, C14orf133, AHSA1, THSD3, SPTLC2, ALKBH1, C14orf156, SNW1,

FLJ25976, ADCK1 V_4840_LC15786_Wong et al. (2007) q24.3

14 90721927 100704213 RP11-557O19 RP11-447D10 84 9.982286 -0.449810838

C14orf159, GPR68, KIAA1509, KIAA2010, PP8961, C14orf161, MTAC2D1, FBLN5, TRIP11, ATXN3, NDUFB1, CPSF2, SLC24A4, RIN3, LGMN, GOLGA5, CHGA, ITPK1, MOAP1, C14orf142, C14orf130, BTBD7, KIAA1409, COX8C, PRIMA1, C14orf152, ASB2, C14orf48, OTUB2, DDX24, FAM14B, IFI27, FAM14A, KIAA1622, SERPINA10, SERPINA6, SERPINA1, SERPINA11, SERPINA9, SERPINA12, SERPINA4, SERPINA5, SERPINA3, SERPINA13, GSC, DICER1, CLMN, C14orf49, GLRX5, TCL6, TCL1B, TCL1A, BDKRB2, BDKRB1, C14orf103, C14orf129, AK7, PAPOLA, VRK1, FLJ25773, BCL11B, SETD3, CCNK, KIAA1822, CYP46A1,

EML1, EVL, DEGS2, YY1, SLC25A29, C14orf68, WARS, WDR25, KIAA1446, DLK1, FLJ41170 V_4846_LC15993_Wong et al. (2007) q32.12-q32.3114 103780000 104533191 RP11-812G18 RP11-150I16 4 0.753191 -0.292638012 LOC400258, FLJ42486, C14orf151, C14orf173, ADSSL1, SIVA1, AKT1, KIAA0284, PLD4, C14orf79 q32.33

14 104822654 105501944 RP13-594H12 RP11-84H9 4 0.67929 -0.369193751 BRF1, PACS2, MTA1, CRIP2, CRIP1, C14orf80, TMEM121V_0770_LC16055_Sharp et al. (2005), V_0771_LC16055_Sharp et al. (2005), V_2176_LC16055_Locke et al. (2006), V_4849_LC16055_Wong et al. (2007), V_4850_LC16055_Wong et al. (2007),


15 19970520 63049771 RP13-515J11 CTD-2017F17 393 43.079251 -1.676561706

TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6,

NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C, GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4,

CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3,

ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76, FRMD5, CASC4, CTDSPL2, EIF3S1, KIAA1840, B2M, RN

V_0183_LC16121_Iafrate et al. (2004), V_0185_LC16139_Iafrate et al. (2004), V_0186_LC16139_Iafrate et al. (2004), V_0187_LC16139_Iafrate et al. (2004), V_0188_LC16238_Iafrate et al. (2004), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_2182_LC16090_Locke et al. (2006), V_2183_LC16090_Locke et al. (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. (2007), V_4876_LC16139_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007), V_4878_LC16090_Wong et al. (2007),

V_4879_LC16090_Wong et al. (2007), V_4880_LC16090_Wong et al. (2007), V_4881_LC16090_W q11.2-q22.3116 2491719 2754990 RP11-20I23 RP11-598P9 3 0.263271 -0.368203259 KIAA1171, ATP6V0C, AMDHD2, CP-23, PDPK1, LOC283874, KCTD5, PRSS27, SRRM2 V_4918_LC16593_Wong et al. (2007), V_4919_LC16593_Wong et al. (2007) p13.316 76677213 78326800 RP11-190D6 RP11-763N1 34 1.649587 -1.040284684 WWOX, MAF q23.1-q23.2

16 82683448 88686715 RP11-812D13 RP11-665E3 67 6.003267 -0.837759694

MBTPS1, HSDL1, LRRC50, TAF1C, LOC161931, KCNG4, WFDC1, ATP2C2, KIAA1609, COTL1, C16orf44, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, KIAA0182, Pfs2, MGC17624, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZFPM1, FLJ45530, NHN1, IL17C, CYBA, MVD, SNAI3, RNF166, LOC348180, FAM38A, FLJ45121,

FLJ40448, CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3, LOC197322, CDH15, ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A, PCOLN3, C16orf55, CDK10, MGC26885, C16orf7, ZNF276, FANCA, SPIRE2, NULP1, MC1R, TUBB3, FLJ20186, MGC16385, DBNDD1, MGC3101, GAS8, C16orf3, PRDM7

V_0199_LC17071_Iafrate et al. (2004), V_0200_LC17076_Iafrate et al. (2004), V_4970_LC17076_Wong et al. (2007), V_4971_LC17076_Wong et al. (2007), V_4972_LC17076_Wong et al. (2007), V_4973_LC17076_Wong et al. (2007), V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong et al. (2007), V_4976_LC17076_Wong et al. (2007), V_4977_LC17076_Wong et al. (2007),

V_4978_LC17076_Wong et al. (2007) q23.3-q24.318 44549759 45670802 RP11-437N5 RP11-727G13 11 1.121043 -0.663757894 KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B V_5056_LC18250_Wong et al. (2007) q21.118 45822849 50158913 RP11-171C21 RP11-370J10 40 4.336064 -0.799388531 MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54 V_5057_LC18279_Wong et al. (2007) q21.1-q21.218 53262773 53850653 RP11-706P11 RP11-613N8 4 0.58788 -0.571877733 ONECUT2, FECH, NARS, ATP8B1 q21.31

18 54172719 69639405 RP11-440O4 RP11-458L11 148 15.466686 -0.73666244NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12,

SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1 V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007) q21.31-q22.318 70510844 70996831 RP11-136M16 RP11-242C7 5 0.485987 -0.768408523 ZNF407 q22.318 71463133 72148783 RP11-44O12 RP11-730P12 4 0.68565 -0.684192114 V_5062_LC18530_Wong et al. (2007) q2318 72263101 73312412 RP11-17M16 CTD-2006O17 11 1.049311 -0.725330993 ZNF236, MBP, GALR1 q23

21 38081282 46926492 RP11-95G19 RP11-457P7 98 8.84521 -0.431151159

KCNJ6, DSCR4, DSCR8, DSCR10, KCNJ15, ERG, C21orf24, ETS2, FLJ45139, DSCR2, BRWD1, C21orf87, LOC728776, HMGN1, WRB, C21orf13, SH3BGR, C21orf88, B3GALT5, LOC150084, PCP4, DSCAM, BACE2, PLAC4, FAM3B, MX2, MX1, TMPRSS2, C21orf129, RIPK4, PRDM15, C21orf25, ZNF295, UMODL1, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, TSGA2, SLC37A1, PDE9A, WDR4, NDUFV3, PKNOX1,

CBS, U2AF1, CRYAA, FLJ41733, SNF1LK, HSF2BP, KIAA0179, PDXK, CSTB, RRP1, AGPAT3, TMEM1, PWP2H, C21orf33, ICOSLG, DNMT3L, AIRE, PFKL, C21orf2, TRPM2, LRRC3, C21orf29, KRTAP10-1, KRTAP10-2, KRTAP10-3, KRTAP10-4, KRTAP10-5, KRTAP10-6, KRTAP10-7, KRTAP10-8, KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-3, KRTAP12-2, KRTAP12-1, KRTAP10-12, UBE2G2,

SUMO3, PTTG1IP, ITGB2, C21orf69, C21orf67, C21orf70, ADARB1, PRED57, POFUT2, COL18A1, C21orf123, SLC19A1, PCBP3, COL6A1, COL6A2, FTCD, C21orf56, LSS, MCM3AP, C21orf57, C21orf58, PCNT, DIP2A, S100B, PRMT2 V_5162_LC20269_Wong et al. (2007), V_5163_LC20269_Wong et al. (2007) q22.13-q22.3

22 45774295 48203390 RP11-751L10 RP11-314N5 22 2.429095 -0.537326921 TBC1D22A, FLJ46257, LOC388915, FAM19A5 V_5191_LC20603_Wong et al. (2007) q13.31-q13.33

23 550000 154906914 RP13-76L22 RP11-1245L19 1412 154.356914 -1.375460763

XG, GYG2, ARSD, ARSE, ARSH, ARSF, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX-C, KAL1, FAM9A, FAM9B, TBL1X, GPR143, APXL, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2,

TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444,

PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1,

V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0243_LC20866_Iafrate et al. (2004), V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004), V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. (2004), V_0255_LC21142_Iafrate et al. (2004), V_0362_LC20686_Shaw-Smith et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005), V_0822_LC20844_Sharp et

al. (2005), V_0823_LC20844_Sharp et al. (2005), V_0824_LC20844_Sharp et al. (2005), V_0825_LC21225_Sharp et al. (2005), V_0826_LC21120_Sharp et al. (2005), V_0827_LC21138_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006), V_2276_LC20844_Locke et al.

(2006), V_2277_LC20844_Locke et al. (2006), V_2278_LC20844_Locke et al. (2006), V_2279_LC20 p22.33-q2824 482246 6852946 CTD-2584M8 RP11-737C10 52 6.3707 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 180981008 181476559 RP11-249O6 RP11-611M11 4 0.495551 0.735111084 NPL, DHX9, C1orf14, LAMC1, LAMC2 q25.37 80679629 81333675 RP11-223F3 RP11-24F4 5 0.654046 0.683013195 HGF q21.117 82440005 82665448 CTD-2085L13 RP11-785F16 3 0.225443 0.624504541 q21.117 108543454 108877939 RP11-698J23 RP11-90N13 3 0.334485 0.624415682 q31.117 41834276 42244748 RP11-57A24 RP11-84A7 3 0.410472 1.01291071 LOC474170, ARL17, NSF, WNT3 V_0207_LC17522_Iafrate et al. (2004), V_0803_LC17522_Sharp et al. (2005), V_2228_LC17522_Locke et al. (2006), V_5014_LC17522_Wong et al. (2007) q21.31-q21.3217 47410277 48850755 RP11-42D13 RP11-598H2 13 1.440478 1.386501016 CA10 V_0209_LC17565_Iafrate et al. (2004) q21.33-q2217 60106212 60554447 RP11-737D4 RP11-484A6 11 0.448235 0.698519117 FLJ34306, GNA13 V_2231_LC17631_Locke et al. (2006), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007), V_5024_LC17631_Wong et al. (2007) q24.117 65266467 65889006 RP11-102J7 RP11-679E1 4 0.622539 0.586476733 KCNJ16, KCNJ2 V_0211_LC17666_Iafrate et al. (2004) q24.3


17 41698238 42244748 RP11-193J3 RP11-84A7 4 0.54651 1.01291071 LRRC37A, LOC474170, ARL17, NSF, WNT3V_0207_LC17522_Iafrate et al. (2004), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006),




OVMANA

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 307737 796904 RP11-776O18 RP11-809I19 5 0.489167 0.344560681 V_4189_LC0001_Wong et al. (2007), V_4190_LC0001_Wong et al. (2007), V_4191_LC0001_Wong et al. (2007) p36.331 3916941 6045644 RP11-718D19 RP11-618E8 22 2.128703 0.412504606 AJAP1, NPHP4, KCNAB2 V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007) p36.32-p36.31

1 6557883 23419981 RP11-36K18 RP11-513J16 162 16.862098 0.739377316

TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2,

IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10, PRAMEF3, PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2, KIAA1026, FLJ43806, TMEM51, EFHD2, CTRC, ELA2A, ELA2B, CASP9, DNAJC16, AGMAT, DDI2, RSC1A1, SLC25A34, LOC388595, FBLIM1, SPEN, ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, C1orf117, EPHA2, ARHGEF19, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2, NBPF1,

LOC440570, CROCC, MFAP2, ATP13A2, SDHB, PADI2, PADI1, PADI3, PADI4, PADI6, RCC2, ARHGEF10L, ACTL8, IGSF21, KLHDC7A, PAX7, TAS1R2, ALDH4A1, ZUBR1, KIAA0090, MRT4, AFAR3, AKR7A3, AKR7A2, PQLC2, CAPZB, C1orf151, NBL1, HTR6, TMCO4, RNF186, PLA2G2E, PLA2G2A, PLA2G5, PLA2G2D, PLA2G2F, UBXD3, FLJ32784, CAMK2N1, C1orf166, FAM43B, CDA, PINK1, DDOST, K

V_0003_LC0126_Iafrate et al. (2004), V_0004_LC0152_Iafrate et al. (2004), V_0005_LC0177_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005), V_0677_LC0152_Sharp et al. (2005), V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_2045_LC0219_Locke et al. (2006), V_2046_LC0230_Locke et al. (2006), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007), V_4203_LC0113_Wong et al. (2007), V_4204_LC0118_Wong et al. (2007), V_4205_LC0141_Wong et al. (2007), V_4206_LC0165_Wong et al. (2007), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007), V_4209_LC0177_Wong et al. (2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al. (2007), V_4213_LC0201_Wong et al. (2007), V_4214_LC0213_Wong et al. (2007), V_4215_LC0219_Wong et al. (2007),


1 24220190 27379004 RP11-23K15 RP11-1005F7 43 3.158814 0.443823821MYOM3, IL22RA1, IL28RA, GRHL3, C1orf201, NPAL3, DSCR1L2, C1orf130, SRRM1, CLIC4, RUNX3, SYF2, C1orf63, RHD, TMEM50A, RHCE, TMEM57, LDLRAP1, MAN1C1, SEPN1, FAM54B, C1orf135, PAQR7, FLJ32206, STMN1, PAFAH2, EXTL1, SLC30A2, TRIM63,

PDIK1L, GRRP1, ZNF593, CNKSR1, CATSPER4, CCDC21, SH3BGRL3, UBXD5, CD52, FLJ38020, AIM1L, ZNF683, LIN28, DHDDS, HMGN2, RPS6KA1, ARID1A, PIGV, ZDHHC18, SFN, ATPBD1B, GPATC3, NR0B2, NUDC, C1orf172, LOC388610, FAM46B, SLC9A1 V_0680_LC0248_Sharp et al. (2005), V_2047_LC0248_Locke et al. (2006), V_4217_LC0248_Wong et al. (2007), V_4218_LC0253_Wong et al. (2007) p36.11

1 27929124 39811460 RP11-427O24 RP11-69E11 118 11.882336 0.562544175

FAM76A, STX12, PPP1R8, C1orf38, RPA2, SMPDL3B, XKR8, EYA3, PTAFR, DNAJC8, ATPIF1, SESN2, MED18, PHACTR4, SNHG3-RCC1, RCC1, TRSPAP1, RAB42, TAF12, GMEB1, YTHDF2, OPRD1, EPB41, TTMB, SFRS4, MECR, PTPRU, MATN1, LAPTM5, SDC3, PUM1,FAM77C, WDR57, ZCCHC17, FABP3, SERINC2, TINAGL1, HCRTR1, PEF1, COL16A1, BAI2, SPOCD1, PTP4A2, KHDRBS1, TMEM39B, KPNA6, TXLNA, CCDC28B, IQCC, C1orf91, EIF3S2, C1orf90, LCK, HDAC1, MARCKSL1, TSSK3, BSDC1, ZBTB8, ZBTB8OS, RBBP4, SYNC1, KIAA1522, YARS, S100PBP, FNDC5, HPCA, TMEM54, IBRDC3, AK2, ADC, TRIM62, FLJ25476, A3GALT2, PHC2, ZNF31, CSMD2, HMGB4, C1orf94, GJB5, GJB4, GJB3, GJA4, C1orf212, DLGAP3, ZMYM6, ZMYM1, SFPQ, ZMYM4, KIAA0319L, NCDN, TFAP2E, PSMB2, FLJ38984, CLSPN, EIF2C4, EIF2C1, EIF2C3, TEKT2, ADPRHL2, COL8A2, TRAPPC3, RPRC1, THRAP3, C1orf113, C1orf78, STK40, LSM10, C1orf102, MRPS15, CSF3R, GRIK3, ZC3H12A, C1orf149, SNIP1, DNALI1, GNL2, RSPO1, C1orf109, CDCA8, EPHA10,

MANEAL, YRDC, C1orf122, MTF1, INPP5B, SF3A3, FHL3, UTP11L, POU3F1, RRAGC, MYCBP, GJA10, RHBDL2, C1orf108, NDUFS5, MACF1, BMP8A, PABPC4 V_0006_LC0305_Iafrate et al. (2004) p35.3-p34.2

1 40860040 246944046 RP11-644L15 RP11-378I20 1774 206.084006 1.307334919

RIMS3, NFYC, KCNQ4, CITED4, CTPS, FLJ23878, SCMH1, EDN2, HIVEP3, GUCA2B, GUCA2A, FOXJ3, FAM80A, ZMYND12, PPCS, LOC728621, PPIH, YBX1, CLDN19, LEPRE1, C1orf50, CCDC23, ERMAP, ZNF691, SLC2A1, EBNA1BP2, WDR65, TMEM125, MGC52423, TIE1, MPL, CDC20, ELOVL1, MED8, C1orf84, KIAA0467, HYI, PTPRF, JMJD2A, ST3GAL3, ARTN, IPO13, DPH2, ATP6V0B, B4GALT2, CCDC24, SLC6A9, KLF17, DMAP1, PRNPIP, C1orf164, TMEM53, MGC33556, KIF2C, RPS8, BEST4, PLK3, LOC343521, PTCH2, EIF2B3,

HECTD3, UROD, GLOXD1, MUTYH, TOE1, TESK2, MMACHC, PRDX1, AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2, PIK3R3, TSPAN1, POMGNT1, C1orf190, RAD54L, LRRC41, UQCRH, NSUN4, FAAH, DMBX1, FLJ32011, MKNK1, MOBKL2C, ATPAF1, KIAA0494, CYP4B1, CYP4A11, CYP4X1, CYP4Z1, CYP4A22, PDZK1IP1, TAL1, STIL, CMPK, FOXE3, FOXD2, SLC5A9, SPATA6, AGBL4, C1orf165, ELAVL4, FAF1, CDKN2C, RNF11, C1orf34, EPS15, OSBPL9, NRD1, RAB3B, TXNDC12, KTI12, BTF3L4, ZFYVE9, CC2D1B,

ORC1L, PRPF38A, ZCCHC11, GPX7, MGC52498, C1orf163, ZYG11B, ECHDC2, SCP2, PODN, SLC1A7, CPT2, C1orf123, MAGOH, LRP8, DMRTB1, GLIS1, TMEM48, YIPF1, DIO1, C1orf41, LRRC42, LDLRAD1, TMEM59, C1orf83, CDCP2, LOC606495, MRPL37, SSBP3, ACOT11, C1orf179, C1orf175, TTC4, PARS2, TTC22, C1orf177, DHCR24, TMEM61, BSND, PCSK9, FLJ45337, PPAP2B, PRKAA2, C1orf1

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0012_LC0649_Iafrate et al. (2004), V_0013_LC0711_Iafrate et al. (2004), V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_2049_LC0673_Locke et al. (2006), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_2052_LC0752_Locke et al. (2006), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al. (2006), V_2056_LC1401_Locke et al. (2006), V_2091_LC1120_Locke et al. (2006), V_4220_LC0334_Wong et al. (2007), V_4221_LC0339_Wong et al. (2007), V_4222_LC0349_Wong et al. (2007), V_4223_LC0373_Wong et al. (2007), V_4224_LC0373_Wong et al. (2007),

V_4225_LC0378_Wong et al. (2007), V_4226_LC0413_Wong et al. (2007), V_4227_LC p34.2-q442 41662 885732 CTD-2379H9 RP11-100K14 9 0.84407 0.509255352 SH3YL1, ACP1, LOC285016, TMEM18 p25.32 9382700 11754223 RP11-360P14 RP11-641J22 24 2.371523 0.618971375 DDEF2, ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11, CYS1, RRM2, FLJ25102, HPCAL1, ODC1, NOL10, ATP6V1C2, PDIA6, KCNF1, FLJ25143, PQLC3, ROCK2, E2F6, GREB1, NTSR2 p25.1

2 23828557 27528584 RP11-606O24 RP11-354O17 33 3.700027 0.529935692UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4, FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI, MGC16372, OTOF, CIB4, KCNK3, C2orf18, CENPA,

DPYSL5, MAPRE3, FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172 p24.1-p23.32 31611803 34162589 RP11-185D8 RP11-10O7 26 2.550786 0.57824904 SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A p23.1-p22.32 38445380 39101516 RP11-155J4 RP11-52J22 7 0.656136 0.405569209 ARL6IP2, HNRPLL, GALM, SFRS7, GEMIN6, DHX57, SOS1 p22.12 86301475 87062936 RP11-555P20 RP13-502G23 11 0.761461 0.477752973 REEP1, JMJD1A, VPS24, RNF103, FLJ13910, CD8A, CD8B p11.2

2 87988571 89947275 RP11-363L4 RP11-447F8 16 1.958704 0.656514252 RGPD2, LOC51315, SMYD1, FABP1, FLJ10916, FLJ25369, EIF2AK3, RPIAV_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_4294_LC2035_Wong et al. (2007), V_4295_LC2046_Wong et al. (2007), V_4296_LC2046_Wong et al. (2007), V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al. (2007), V_0373_LC2046_Bejjani et al. (2005) p11.2

2 94689898 95568811 RP11-134N21 RP11-203K11 10 0.878913 1.584707306 TEKT4, MAL, MRPS5, ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A V_4299_LC2057_Wong et al. (2007) q11.12 95857272 97116368 RP11-625O3 RP11-219H23 11 1.259096 1.049202513 LOC150763, ADRA2B, ASTL, DUSP2, STARD7, LOC285033, TMEM127, WDR39, ASCC3L1, KIAA1754L, BRRN1, LINCR, ARID5A, FLJ10081, LOC90342, LMAN2L, CNNM4, CNNM3, ANKRD23, ANKRD39, SEMA4C, LOC51252, DKFZp434N062 V_4300_LC2064_Wong et al. (2007) q11.2

2 97565465 104705643 RP11-762L12 RP11-775G12 61 7.140178 1.082762618KIAA1641, COX5B, ACTR1B, ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A, MGC42367, TSGA10, C2orf15, LIPT1, LOC129531, MRPL30, LYG2, LOC129530, TXNDC9, EIF5B, REV1L, AFF3, LONRF2, CHST10, NMS, PDCL3, NPAS2, RPL31, C2orf29,

RNF149, CREG2, MAP4K4, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294 V_4301_LC2072_Wong et al. (2007), V_4302_LC2081_Wong et al. (2007) q11.2-q12.12 128690604 129473085 RP11-495E11 RP11-136I5 6 0.782481 0.780594317 HS6ST1 V_0693_LC2234_Sharp et al. (2005), V_4305_LC2229_Wong et al. (2007) q14.32 130036907 132831332 RP11-675D6 RP11-259G19 31 2.794425 0.731430655 RAB6C, CCDC74B, NSMASE3, FLJ14346, LOC112714, MGC12981, IMP4, PTPN18, CFC1, LOC653275, GPR148, FLJ38377, ARHGEF4, LOC130074, PLEKHB2, POTE2, LOC150786, H2-ALPHA, FAM128A, CCDC74A, FKSG30, C2orf27, MGC50273, FLJ41821 V_0024_LC2234_Iafrate et al. (2004), V_0025_LC2234_Iafrate et al. (2004), V_4307_LC2234_Wong et al. (2007) q21.1-q21.22 135339286 136025893 RP11-818A7 RP11-117H9 7 0.686607 0.353909712 ACMSD, CCNT2, YSK4, RAB3GAP1, ZRANB3, R3HDM1 q21.32 169863522 170593639 RP11-241K17 RP11-178D14 6 0.730117 0.4047509 LRP2, BBS5, KBTBD10, FLJ21901, PPIG, PHOSPHO2, KLHL23, SSB, METTL5, ZNF650 q31.12 171684646 173391782 RP11-787D17 RP11-184N2 19 1.707136 0.542675427 TLK1, METTL8, C2orf37, CYBRD1, DYNC1I2, SLC25A12, HAT1, MAP1D, DLX1, DLX2, ITGA6, PDK1, RAPGEF4 q31.12 174698931 175227398 RP11-451F14 RP11-483E17 5 0.528467 0.394719813 PTD004, FLJ46347, CIR, SCRN3, GPR155, WIPF1 q31.12 176134627 176910893 RP11-143A20 RP11-144H7 8 0.776266 0.493587959 KIAA1715, EVX2, HOXD13, HOXD12, HOXD11, HOXD10, HOXD9, HOXD8, HOXD4, HOXD3, HOXD1, MTX2 q31.12 210521405 214010488 RP11-260M2 RP11-38N8 37 3.489083 0.636177919 RPE, FLJ23861, ACADL, MYL1, LANCL1, CPS1, ERBB4, IKZF2, SPAG16 V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007) q342 220168336 225943830 RP11-204A16 RP11-296C11 63 5.775494 0.328155308 STK11IP, SLC4A3, EPHA4, PAX3, FLJ32447, SGPP2, FARSLB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FLJ22746, CUL3, DOCK10 V_4328_LC2702_Wong et al. (2007) q35-q36.33 101803993 109140375 RP11-259H19 RP11-36C7 76 7.336382 0.682381116 GPR128, TFG, ABI3BP, IMPG2, SENP7, RG9MTD1, PCNP, ZBTB11, RPL24, LRRIQ2, FAM55C, NFKBIZ, ZPLD1, ALCAM, CBLB, CCDC54, BBX V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007) q12.2-q13.123 109236306 111292230 RP11-25F15 RP11-519L1 25 2.055924 0.684613337 CD47, IFT57, HHLA2, KIAA1524, DZIP3, RETNLB, TRAT1, GUCA1C, MORC1, DPPA2, DPPA4 q13.12-q13.13

3 112946777 122346590 RP11-43K9 RP11-151F11 107 9.399813 0.514063876PLCXD2, PHLDB2, ABHD10, TAGLN3, TMPRSS7, C3orf52, GCET2, SLC9A10, CD200, BTLA, ATG3, SLC35A5, URB, CD200R2, CD200R1, GTPBP8, C3orf17, BOC, WDR52, CCDC52, SIDT1, KIAA2018, MAK3, ATP6V1A, GRAMD1C, ZDHHC23, KIAA1407, QTRTD1, DRD3,

ZNF80, VSIG9, ZBTB20, GAP43, LSAMP, IGSF11, C3orf30, UPK1B, B4GALT4, CDGAP, TMEM39A, C3orf9, C3orf1, CD80, ADPRH, PLA1A, POPDC2, COX17, C3orf15, NR1I2, GSK3B, GPR156, FSTL1, NDUFB4, HGD, RABL3, GTF2E1 V_0035_LC3553_Iafrate et al. (2004), V_4351_LC3524_Wong et al. (2007) q13.2-q13.333 122528483 124513055 RP11-374L3 RP11-747M17 28 1.984572 0.573673291 POLQ, ARGFX, FBXO40, HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58, C3orf28, WDR5B, KPNA1, PARP9, DTX3L, PARP15, PARP14, HSPBAP1, DIRC2, SEMA5B, PDIA5, SEC22A, ADCY5 q13.33-q21.13 126027970 126919845 RP11-158P20 RP11-493H22 6 0.891875 0.446735261 ITGB5, MUC13, SLC12A8, ZNF148, SNX4, OSBPL11 q21.23 127129692 127565087 RP11-645I20 RP11-319C18 4 0.435395 0.459676768 LOC200810, ROPN1B, SLC41A3, ALDH1L1, KLF15 V_4352_LC3588_Wong et al. (2007) q21.23 131099651 131525410 RP11-380P18 RP11-687B8 4 0.425759 0.656657804 TRH, ARVP6125 q21.3-q22.13 137044396 139033864 RP11-401F7 RP11-630C21 20 1.989468 0.547167151 PPP2R3A, MSL2L1, PCCB, STAG1, TMEM22, NCK1, FNDC6, SOX14 q22.2-q22.33 139869878 140319486 RP11-107B3 RP11-261H4 4 0.449608 0.29527731 PIK3CB, FOXL2, LOC389151, FLJ46210 q22.33 142657253 143577667 RP11-792P6 RP11-308N9 14 0.920414 0.514670305 RASA2, RNF7, GRK7, ATP1B3, TFDP2, MGC40579, XRN1 q233 145885473 146136782 RP11-200O17 RP11-715E13 3 0.251309 0.412152111 q243 163462966 163967452 RP11-450G22 RP11-512K15 5 0.504486 0.443970846 V_4359_LC3802_Wong et al. (2007) q26.13 164502199 165466432 RP11-738I4 RP11-79F11 8 0.964233 0.499707994 V_0038_LC3802_Iafrate et al. (2004) q26.13 171242218 171669765 RP11-81K8 RP11-83I13 3 0.427547 0.384334256 GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14 q26.23 176200817 182944388 RP11-419M4 RP11-379M20 66 6.743571 0.603103125 NAALADL2, TBL1XR1, KCNMB2, WIG1, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, TTC14, FXR1, DNAJC19, SOX2 V_0040_LC3895_Iafrate et al. (2004), V_4363_LC3872_Wong et al. (2007) q26.31-q26.333 188977637 194235530 RP11-30O15 RP11-489O5 52 5.257893 0.624209072 LPP, FAM79B, TP73L, LEPREL1, CLDN1, CLDN16, UNQ846, IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12, C3orf59 V_2062_LC4004_Locke et al. (2006) q27.3-q297 27229502 30864048 RP11-26E6 RP11-446A8 37 3.634546 2.536435835 EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2, INMT, FLJ22374 V_4529_LC9384_Wong et al. (2007) p15.2-p15.17 33133631 35007366 RP11-349E11 RP11-131G15 21 1.873735 0.544360911 PTHB1, BMPER, AAA1, GPR154 p14.37 35508677 39524788 RP11-325E8 RP11-449H23 34 4.016111 0.530939322 FLJ22313, KIAA1706, KIAA0895, ANLN, AOAH, ELMO1, GPR141, TXNDC3, SFRP4, EPDR1, STARD3NL, TARP, AMPH, VPS41, POU6F2 V_0719_LC9421_Sharp et al. (2005), V_4530_LC9436_Wong et al. (2007) p14.3-p14.17 46772247 48325961 CTD-2009F6 CTD-2369L17 18 1.553714 0.504938637 LOC641980, TNS3, PKD1L1, FLJ21075, HUS1, SUNC1, UPP1, ABCA13 V_4534_LC9482_Wong et al. (2007), V_4535_LC9486_Wong et al. (2007) p12.3

7 65791448 75345977 RP11-605M5 RP11-812L15 117 9.554529 0.600690408RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4,

WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007),

V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007), V_4545_LC9609_Wong et al. (2007) q11.21-q11.238 43735668 48241291 RP11-32P10 RP11-1134I14 8 4.505623 0.981894022 V_4590_LC10569_Wong et al. (2007) p11.1-q11.21

8 48741857 59919950 RP11-167E7 RP11-630K16 99 11.178093 0.662542961KIAA0146, CEBPD, PRKDC, MCM4, UBE2V2, EFCAB1, SNAI2, C8orf22, SNTG1, PXDNL, PCMTD1, ST18, UNQ9433, RB1CC1, NPBWR1, OPRK1, ATP6V1H, RGS20, TCEA1, LYPLA1, MRPL15, SOX17, RP1, XKR4, TMEM68, NCOA6IP, LYN, RPS20, MOS, PLAG1, CHCHD7,

RDHE2, PENK, IMPAD1, C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX V_4591_LC10578_Wong et al. (2007), V_4592_LC10583_Wong et al. (2007), V_4593_LC10587_Wong et al. (2007), V_4594_LC10611_Wong et al. (2007) q11.21-q12.18 61311350 62527427 RP11-66L5 RP11-633C3 10 1.216077 0.599848004 CA8, RAB2, CHD7, MGC34646 q12.1-q12.38 64068062 64364666 RP11-19J7 CTD-2012L15 4 0.296604 0.31235094 GGH, TTPA, YTHDF3 V_4596_LC10633_Wong et al. (2007) q12.3

8 65291881 143644529 RP11-32K4 CTD-2599D24 655 78.352648 1.013687871

BHLHB5, CYP7B1, ARMC1, MTFR1, PDE7A, DNAJC5B, TRIM55, CRH, RRS1, ADHFE1, C8orf46, MYBL1, VCPIP1, C8orf44, SGK3, C8orf45, LOC286187, COPS5, CSPP1, ARFGEF1, CPA6, DEPDC2, C8orf34, SULF1, SLCO5A1, PRDM14, NCOA2, TRAM1, LACTB2, XKR9, EYA1, MSC, TRPA1, KCNB2, TERF1, RPESP, RPL7, RDH10, STAU2, UBE2W, TCEB1, TMEM70, LY96, JPH1, GDAP1, PI15, CRISPLD1, HNF4G, ZFHX4, PXMP3, PKIA, C8orf70, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10, ZNF704, PAG1, FABP5, PMP2, PERF15,

FABP4, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16, LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1, WDR21C, MMP16, RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64, EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1, RBM12B, TMEM67, PPM2C, CDH17, GEM, RAD54B, KIAA1429, RBM35A, DPY19L4, INTS8, CCNE2, TP53INP1, C8orf38, PLEKHF2, C8orf37, GDF6, UQCRB, MTERFD1, PTDSS1, SDC2, PGCP, TSPYL5, MTDH, LAPTM4B, MATN2,RPL30, C8orf47, HRSP12, POP1, NPAL2, KCNS2, STK3, OSR2, VPS13B, COX6C, RGS22, FBXO43, POLR2K, SPAG1, RNF19, ANKRD46, MGC39715, PABPC1, YWHAZ, ZNF706, GRHL2, NCALD, RRM2B, EDD1, ODF1, KLF10, AZIN1, ATP6V1C1, BAALC, FZD6, CTHRC1,

SLC25A32, WDSOF1, RIMS2, TM7SF4, DPYS, LRP12, ZFPM2, OXR1, ABRA, ANGPT1, RSPO2, EIF3S6, TTC35, TMEM74, TRHR, NUDC

V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4598_LC10640_Wong et al. (2007), V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007), V_4605_LC10727_Wong et al. (2007), V_4606_LC10731_Wong et al. (2007), V_4607_LC10749_Wong et al. (2007), V_4608_LC10811_Wong et al. (2007),

V_4609_LC10877_Wong et al. (2007), V_4610_LC10912_Wong et al. (2007), V_4611_LC10941_Wong et al. (2007) q12.3-q24.312 3494436 6013605 RP11-312A3 RP11-58H19 21 2.519169 0.579858111 PRMT8, MGC4266, PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B, VWF p13.32-p13.3112 6759724 7360779 RP11-789M14 RP11-586N4 8 0.601055 0.525352087 CD4, GPR162, LEPREL2, GNB3, CDCA3, USP5, TPI1, SPSB2, LRRC23, ENO2, ATN1, C12orf57, PTPN6, PHB2, EMG1, OACT5, C1S, C1R, C1RL, RBP5, CLSTN3, PEX5, LOC341392 p13.31

12 8486385 23439470 RP11-561P12 RP11-473B8 133 14.953085 0.796046798

KLRC4, KLRC3, KLRC2, KLRC1, KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4, PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19, CDKN1B, APOLD1, DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP, FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4, MGP, C12orf46,

ARHGDIB, PDE6H, RERG, PTPRO, EPS8, STRAP, DERA, MGST1, LMO3, FLJ22655, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1

V_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007), V_4770_LC13869_Wong et al. (2007), V_4772_LC13891_Wong et al. (2007) p13.31-p12.1

12 26920750 28603714 RP11-524K7 RP11-546D23 22 1.682964 0.632082363 C12orf11, FGFR1OP2, TM7SF3, SURB7, LOC728858, STK38L, ARNTL2, PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH, CCDC91 p11.23-p11.22

12 32972384 47137287 RP11-296N19 RP11-373E24 126 14.164903 0.628672813SYT10, ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4,

AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641 V_2170_LC13972_Locke et al. (2006), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007) p11.21-q13.11

12 49237790 51330430 RP11-569H7 RP11-593B8 21 2.09264 0.48586237DIP2B, ATF1, TMPRSS12, METTL7A, SLC11A2, LETMD1, C12orf22, TFCP2, POU6F1, DAZAP2, LOC57228, BIN2, ELA1, GALNT6, SLC4A8, SCN8A, LOC401720, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRTHB1, KRTHB6, KRTHB3, KRT85,

KRTHB4, KRTHB2, K6HF, KRT6B, KRT6C, KRT6A, KRT5, KRT6IRS, K6IRS4, K6IRS2, K6IRS3, KRT2A V_4778_LC14057_Wong et al. (2007) q13.1312 83401098 85237570 RP11-534K23 RP11-345D11 16 1.836472 0.617001383 SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C V_4784_LC14261_Wong et al. (2007) q21.31-q21.3212 85892086 89279267 RP11-434B6 CTD-2245H13 29 3.387181 0.656279124 C12orf50, C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1 V_0165_LC14278_Iafrate et al. (2004) q21.32-q21.3312 103985404 104529316 RP11-61E11 RP11-84O16 5 0.543912 0.529832378 ALDH1L2, KIAA1033, DIP13B q23.3

14 100541174 106318374 RP11-447D10 CTD-2313E3 58 5.7772 0.624599368FLJ41170, DIO3, PPP2R5C, DYNC1H1, HSP90AA1, WDR20, RAGE, C14orf131, CINP, KIAA0329, ANKRD9, RCOR1, TRAF3, AMN, CDC42BPB, C14orf73, TNFAIP2, EIF5, MARK3, CKB, C14orf172, BAG5, C14orf153, KNS2, XRCC3, ZFYVE21, PPP1R13B, C14orf2, TDRD9,

LOC374569, LOC400258, FLJ42486, C14orf151, C14orf173, ADSSL1, SIVA1, AKT1, KIAA0284, PLD4, C14orf79, CDCA4, GPR132, JAG2, NUDT14, BRF1, BTBD6, PACS2, MTA1, CRIP2, CRIP1, C14orf80, TMEM121

V_0180_LC16001_Iafrate et al. (2004), V_0182_LC16055_Iafrate et al. (2004), V_0770_LC16055_Sharp et al. (2005), V_0771_LC16055_Sharp et al. (2005), V_0772_LC16055_Sharp et al. (2005), V_0773_LC16055_Sharp et al. (2005), V_0774_LC16055_Sharp et al. (2005), V_2176_LC16055_Locke et al. (2006), V_2177_LC16055_Locke et al. (2006), V_2178_LC16055_Locke et al. (2006), V_2179_LC16055_Locke et al. (2006), V_4847_LC16001_Wong et al. (2007), V_4848_LC16001_Wong et al. (2007), V_4849_LC16055_Wong et al. (2007), V_4850_LC16055_Wong et al. (2007), V_4851_LC16055_Wong et al. (2007), V_4852_LC16055_Wong et al. (2007), V_4853_LC16055_Wong et al. (2007), V_4854_LC16055_Wong et al. (2007), V_4855_LC16055_Wong et al. (2007), V_4856_LC16055_Wong et al. (2007), V_4857_LC16055_Wong et al. (2007), V_4858_LC16055_Wong et al. (2007), V_4859_LC16055_Wong et al. (2007),

V_4860_LC16055_Wong et al. (2007), V_0377_LC16055_Bejjani et al. (2005) q32.31-q32.3316 11260125 11703585 RP11-539I6 RP11-547D14 3 0.44346 0.370931426 TNP2, PRM3, PRM2, PRM1, MGC24665, LOC400499, LITAF, SNN, TXNDC11 p13.1317 16721253 17586373 RP11-801O7 RP11-72B12 7 0.86512 0.313307991 TNFRSF13B, M-RIP, LOC201164, FLCN, COPS3, NT5M, MED9, RASD1, PEMT, RAI1 V_4990_LC17383_Wong et al. (2007) p11.2

17 21609201 27707130 RP11-797J12 RP11-634A23 57 6.097929 0.663754642

FAM27L, WSB1, KSR1, LGALS9, NOS2A, LOC201229, NLK, FLJ40504, TMEM97, IFT20, TNFAIP1, POLDIP2, C17orf32, SEBOX, VTN, SARM1, HCP1, SLC13A2, FOXN1, UNC119, PIGS, ALDOC, SPAG5, FLJ25006, KIAA0100, SDF2, SUPT6H, PROCA1, RAB34, RPL23A, TLCD1, NEK8, TRAF4, C17orf63, ERAL1, FLOT2, MGC23280, PHF12, SEZ6, PIPOX, MYO18A, TIAF1, CRYBA1, NUFIP2, TAOK1, LOC116236, TP53I13, GIT1, ANKRD13B, CORO6, SSH2, FLJ46247, CCDC55, SLC6A4, BLMH, TMIGD, CPD, GOSR1, DKFZP434O047, CRLF3,

C17orf41, C17orf42, CENTA2, RNF135, NF1, OMG, EVI2B, EVI2A, RAB11FIP4, C17orf79, C17orf40, SUZ12, LRRC37B, RHOT1, RHBDL3, C17orf75, ZNF207 V_4998_LC17406_Wong et al. (2007), V_4999_LC17431_Wong et al. (2007) p11.2-q11.2

17 28664889 33387765 RP11-139K6 CTD-2344A6 50 4.722876 1.042607643ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, FLJ44815, TMEM132E, CCT6B, CCDC16, LIG3, RFFL, RAD51L3, FNDC8, NLE1, UNC45B, AMAC1, SLFN5, FLJ34922, FLJ10260, SLFN13, PEX12, AP2B1, RASL10B, GAS2L2, C17orf50, MMP28, TAF15, C17orf66, CCL5,

RDM1, LYZL6, CCL16, CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, CCL3L1, CCL3L3, CCL4L1, CCL4L2, TBC1D3C, LOC654341, ZNHIT3, MYOHD1, PIGW, ZNF403, MGC4172, MRM1, LHX1, AATF, ACACA, C17orf78, TADA2L, DUSP14, AP1GBP1, DDX52, TCF2

V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_2220_LC17457_Locke et al. (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. (2006), V_2223_LC17457_Locke et al. (2006), V_5001_LC17457_Wong et al. (2007), V_5002_LC17457_Wong et al. (2007),

V_5003_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007) q11.2-q1217 33840062 34353132 RP11-12M17 RP11-154N9 7 0.51307 0.568606819 SNIP, MLLT6, PCGF2, PSMB3, PIP5K2B, CCDC49, LOC388381, RPL23, LASP1, FBXO47 V_2224_LC17457_Locke et al. (2006) q1217 34655370 35916681 RP11-592L16 RP11-259G21 13 1.261311 1.011199552 FBXL20, PPARBP, CRKRS, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, ZNFN1A3, ZPBP2, GSDML, ORMDL3, GSDM1, PSMD3, CSF3, THRAP4, THRA, NR1D1, CASC3, RAPGEFL1, WIRE, CDC6, RARA, GJC1, TOP2A, IGFBP4, TNS4 V_5006_LC17473_Wong et al. (2007) q12-q21.2

17 36786416 41793763 RP11-350M22 RP11-193J3 62 5.007347 0.708310843

RAB5C, KCNH4, HCRT, LGP1, STAT5B, STAT5A, STAT3, PTRF, ATP6V0A1, NAGLU, HSD17B1, COASY, MLX, PSMC3IP, LOC162427, TUBG1, TUBG2, PLEKHH3, CCR10, CNTNAP1, EZH1, RAMP2, VPS25, WNK4, CCDC56, CNTD, BECN1, PSME3, AOC2, AOC3, G6PC, AARSD1, RUNDC1, RPL27, IFI35, VAT1, RND2, BRCA1, NBR1, TMEM106A, ARL4D, DHX8, ETV4, MEOX1, SOST, DUSP3, MPP3, CD300LG, MPP2, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, C17orf53, ASB16, C17orf65, TMUB2, UBTF, SLC4A1, RPIP8, CGI-69,

GRN, ITGA2B, KIAA0553, FZD2, FLJ35848, CCDC43, DBF4B, ADAM11, GJA7, HIGD1B, EFTUD2, LOC388389, GFAP, LOC146909, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, FMNL1, C17orf46, MAP3K14, ARHGAP27, LOC201175, PLEKHM1, C17orf69, CRHR1, IMP5, MAPT, STH, KIAA1267, LRRC37A

V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_5007_LC17508_Wong et al. (2007), V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et al. (2007), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007),

V_5012_LC17522_Wong et al. (2007) q21.2-q21.31

17 42157798 78398677 RP11-360B17 RP11-424C10 413 36.240879 2.00166997

NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1, SNX11, SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13, TTLL6, CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB, NGFR, NXPH3, SPOP, SLC35B1, LOC81558, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14,

PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2, MBTD1, UTP18, CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1, CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2,

MRC2, RNF190, CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2,

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0211_LC17666_Iafrate et al. (2004), V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0804_LC17530_Sharp et al. (2005), V_0805_LC17601_Sharp et al. (2005), V_0806_LC17642_Sharp et al. (2005), V_0807_LC17750_Sharp et al. (2005), V_2229_LC17530_Locke et al. (2006), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_2232_LC17640_Locke et al. (2006), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et al. (2006), V_4327_LC17763_Wong et al. (2007), V_4410_LC17595_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007), V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007), V_5019_LC17572_Wong et al. (2007), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007), V_5024_LC17631_Wong et al. (2007), V_5026_LC17636_Wong et al. (2007),

V_5027_LC17640_Wong et al. (2007), V_5028_LC17688_Wong et al. (2007), V_5029_ q21.32-q25.319 23121303 34243485 RP11-798M16 RP11-347I6 43 11.122182 1.978940061 ZNF91, ZNF675, ZNF681, LOC388524, ZNF254 V_2242_LC18908_Locke et al. (2006), V_5095_LC18908_Wong et al. (2007), V_5096_LC18924_Wong et al. (2007) p12-q1219 34733312 35094215 RP11-272C23 RP11-104J24 3 0.360903 1.073358752 POP4, PLEKHF1, C19orf12, CCNE1 q12

19 37455881 42743439 RP11-449C9 RP11-83J10 56 5.287558 1.071133395

ZNF507, MGC35440, DPY19L3, PDCD5, ANKRD27, RGS9BP, ECAT8, SLC7A9, FLJ14640, C19orf40, RHPN2, GPATC1, LOC126248, LRP3, SLC7A10, CEBPA, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, MGC13096, UBA2, WTIP, LOC284402, ZNF302, ZNF181, ZNF599, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467, ZD52F10, SBSN, GAPDHS, NIFIE14, ATP4A, MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6, LOC148137, SNX26, PRODH2, NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565,

ZNF146, KIAA1559, ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345, DKFZp779O175, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569, ZNF570, LOC390927, ZNF540 V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007) q13.11-q13.12

19 43251702 47956951 RP11-1031M21 RP11-653D16 58 4.705249 1.117048207

SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, EIF3S12, ACTN4, CAPN12, LGALS7, LOC653499, LGALS4, ECH1, HNRPL, FLJ45909, SIRT2, NFKBIB, SARS2, MRPS12, FBXO17, FBXO27, FLJ16165, PAK4, LOC342897, SYCN, IL28B, IL28A, IL29, GMFG, SAMD4B, PAF1, IXL, ZFP36, PLEKHG2, RPS16, SUPT5H, TIMM50, DLL3, SELV, EID-3, CRI2, LGALS13, LGALS14, CLC, DYRK1B, FBL, FCGBP, PSMC4, ZNF546, LOC163131,

LOC284323, MAP3K10, TTC9B, FLJ13265, AKT2, FLJ36888, PLD3, HIPK4, PRX, SERTAD1, SERTAD3, BLVRB, SPTBN4, SHKBP1, LTBP4, NUMBL, ADCK4, ITPKC, C19orf54, SNRPA, MIA, RAB4B, EGLN2, CYP2A6, CYP2A7, CYP2B6, CYP2A13, CYP2F1, CYP2S1, AXL, HNRPUL1, MGC20255, TGFB1, MGC4093, TMEM91, EXOSC5, BCKDHA, B3GNT8, FLJ10241, CEACAM21, CEACAM4, CEACAM7, CEACAM5, CEACAM6, CEACAM3, LYPD4, DMRTC2, RPS19, CD79A, ARHGEF1, RABAC1, ATP1A3, GRIK5, ZNF574, POU2F2, DEDD2,

ZNF526, GSK3A, ERF, CIC, PAFAH1B3, MGC70924, TMEM145, MEGF8, SBP1, CNFN, LIPE, UNQ473, CEACAM1, CEACAM8, PSG3, PSG8 V_5100_LC19016_Wong et al. (2007), V_5101_LC19026_Wong et al. (2007) q13.13-q13.3119 48595173 49061534 RP11-557F14 RP11-751A4 4 0.466361 0.313678196 TEX101, LYPD3, PHLDB3, ETHE1, ZNF575, XRCC1, IRGQ, ZNF576, C19orf37, IGSF4C, PLAUR, IRGC, C19orf61, KCNN4, LYPD5 q13.31

19 50285728 63770533 RP11-577I16 CTD-2575K21 191 13.484805 0.610131894

GEMIN7, NKPD1, TRAPPC6A, BLOC1S3, XTP7, MARK4, CKM, KLC3, ERCC2, PPP1R13L, CD3EAP, ERCC1, FOSB, RTN2, FLJ40125, VASP, OPA3, GPR4, EML2, GIPR, SNRPD2, QPCTL, FBXO46, SIX5, DMPK, DMWD, RSHL1, SYMPK, FOXA3, IRF2BP1, LOC339344, NANOS2, NOVA2, LOC729440, PGLYRP1, IGFL4, IGFL3, IGFL2, IGFL1, HIF3A, PPP5C, CCDC8, FLJ10781, LOC400707, CALM3, PTGIR, GNG8, MGC15476, PRKD2, STRN4, FKRP, SLC1A5, AP2S1, GRLF1, NPAS1, FLJ20512, C19orf7, SAE1, BBC3, CCDC9, C5AR1,

GPR77, DHX34, MEIS3, SLC8A2, KPTN, NAPA, GLTSCR1, EHD2, GLTSCR2, SEPW1, TPRX1, CRX, SULT2A1, ELSPBP1, CABP5, PLA2G4C, LIG1, LOC374920, CARD8, ZNF114, FLJ32926, EMP3, FLJ10922, SYNGR4, KDELR1, GRIN2D, GRWD1, KCNJ14, PSCD2, LMTK3, SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, LOC126147, FUT2, FLJ36070, RASIP1, IZUMO1, FUT1, FGF21, BCAT2, DHRS10, PLEKHA4, PPP1R15A, TULP2, NUCB1, DHDH, BAX, FTL, GYS1, RUVBL2, LHB, CGB, CGB2, CGB1, CGB5, CGB8, CGB7, NTF5, KCNA7, SNRP70, LIN7B, FLJ10490, PPFIA3, HRC, TRPM4, SLC6A16, CD37, TEAD2, DKKL1, FLJ32658, TIP39, SLC17A7, FLJ20643, ALDH16A1, FLT3LG, RPL13A, RPS11, FCGRT, RCN3, NOSIP, PRRG2, RRAS, SR-A1, IRF3, BCL2L12, PRMT1, CPT1C, TSKS, AP2A1,

FLJ22688, MED25, PTOV1, PNKP, AKT1S1, TBC1D17, IL4I1, NUP62, ATF5, SIGLEC11, VRK3, ZNF473, FLJ26850, SCRL, MYH14, KCNC

V_0809_LC19144_Sharp et al. (2005), V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et al. (2006), V_2248_LC19144_Locke et al. (2006), V_5103_LC19048_Wong et al. (2007), V_5104_LC19056_Wong et al. (2007), V_5105_LC19069_Wong et al. (2007), V_5106_LC19070_Wong et al. (2007), V_5107_LC19073_Wong et al. (2007), V_5108_LC19073_Wong et al. (2007), V_5109_LC19078_Wong et al. (2007), V_5110_LC19081_Wong et al. (2007), V_5111_LC19081_Wong et al. (2007), V_5112_LC19081_Wong et al. (2007), V_5113_LC19081_Wong et al. (2007), V_5114_LC19090_Wong et al. (2007), V_5115_LC19131_Wong et al. (2007), V_5116_LC19144_Wong et al. (2007), V_5117_LC19144_Wong et al. (2007), V_5118_LC19144_Wong et al. (2007),

V_5119_LC19144_Wong et al. (2007) q13.32-q13.4320 51273285 51966817 RP11-451D2 RP11-55E1 7 0.693532 1.352601167 TSHZ2, ZNF217 V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2

22 18002150 19854524 RP11-652F11 RP11-294A9 22 1.852374 0.579647313GP1BB, TBX1, GNB1L, C22orf29, TXNRD2, COMT, ARVCF, C22orf25, DGCR8, HTF9C, RANBP1, ZDHHC8, RTN4R, DGCR6L, ZNF74, SCARF2, KLHL22, PCQAP, PIK4CA, SERPIND1, SNAP29, CRKL, AIFL, LZTR1, THAP7, MGC16703, P2RXL1, SLC7A4, LOC400891,

FLJ42953V_0816_LC20342_Sharp et al. (2005), V_2261_LC20342_Locke et al. (2006), V_2262_LC20342_Locke et al. (2006), V_5168_LC20342_Wong et al. (2007), V_5169_LC20342_Wong et al. (2007), V_5170_LC20342_Wong et al. (2007), V_5171_LC20342_Wong et al. (2007), V_5172_LC20342_Wong et al. (2007) q11.21

22 44023545 44662653 RP11-660F9 RP11-699K18 6 0.639108 0.550101191 UPK3A, C22orf8, SMC1L2, RIBC2, FBLN1, ATXN10 q13.31

22 47187822 49518700 CTD-2260N21 RP11-423E19 19 2.330878 0.693012203FAM19A5, LOC348645, BRD1, ZBED4, ALG12, CRELD2, PIM3, FLJ41993, LOC164714, MLC1, MOV10L1, PANX2, PP2447, SELO, TUBGCP6, HDAC10, MAPK12, MAPK11, FAM116B, SAPS2, SBF1, ADM2, MIOX, BC002942, hCAP-H2, SCO2, ECGF1, LOC440836,

KLHDC7B, CPT1B, CHKB, MAPK8IP2, ARSA, SHANK3 V_0239_LC20651_Iafrate et al. (2004), V_5192_LC20651_Wong et al. (2007), V_5193_LC20651_Wong et al. (2007) q13.32-q13.33


3 36784 59894060 RP11-359E9 RP11-170K19 596 59.857276 -0.745343906

TTLL3, RPUSD3, CIDEC, JAGN1, IL17RE, IL17RC, CRELD1, PRRT3, TMEM111, LOC401052, FANCD2, C3orf24, C3orf10, VHL, IRAK2, TATDN2, C3orf42, GHRL, SEC13L1, ATP2B2, SLC6A11, SLC6A1, HRH1, ATG7, VGLL4, C3orf31, SYN2, TIMP4, PPARG, TSEN2, MKRN2, RAF1, TMEM40, CAND2, RPL32, IQSEC1, NUP210, HDAC11, FBLN2, WNT7A, CHCHD4, TMEM43, XPC, LSM3, SLC6A6, GRIP2, C3orf19, C3orf20, FGD5, NR2C2, MRPS25, ZFYVE20, CAPN7, SH3BP5, METTL6, EAF1, COLQ, PHYH2, BTD, ANKRD28, GALNTL2, ZCSL2, OXNAD1, RAFTLIN, DAZL, PLCL2, TBC1D5, SATB1, KCNH8, EFHB, RAB5A, C3orf48, PCAF, SGOL1, ZNF659, UBE2E2, UBE2E1, NKIRAS1, RPL15, NR1D2, THRB, RARB, TOP2B, NGLY1, OXSM, LRRC3B, NEK10, SLC4A7, EOMES, MGC61571, AZI2, ZCWPW2, RBMS3,

TGFBR2, GADL1, STT3B, OSBPL10, GPD1L, CMTM8, CMTM7, CMTM6, DYNC1LI1, CNOT10, LIN41, CCR4, GLB1, FLJ45032, CRTAP, FBXL2, UBP1, CLASP2, PDCD6IP, ARPP-21, STAC, EPM2AIP1, MLH1, LRRFIP2, GOLGA4, C3orf35, ITGA9, CTDSPL, VILL, PLCD1, DLEC1, ACAA1, MYD88, OXSR1, SLC22A13, SLC22A14, XYLB, ACVR2B, ENDOGL1, SCN5A, SCN10A, SCN11A, WDR48, GORASP1, TT

V_4332_LC3007_Wong et al. (2007), V_4333_LC3142_Wong et al. (2007), V_4334_LC3163_Wong et al. (2007), V_4335_LC3182_Wong et al. (2007), V_4336_LC3182_Wong et al. (2007), V_4337_LC3192_Wong et al. (2007), V_4338_LC3192_Wong et al. (2007), V_4339_LC3195_Wong et al. (2007),

V_0359_LC2871_Shaw-Smith et al. (2004) p26.3-p14.2

3 60131131 86947951 RP11-182G24 RP11-582G24 216 26.81682 -0.786642115FHIT, PTPRG, C3orf14, ZNF312, CADPS, SYNPR, FLJ44379, THOC7, ATXN7, PSMD6, PRICKLE2, ADAMTS9, MAGI1, SLC25A26, LRIG1, KBTBD8, SUCLG2, FAM19A1, FAM19A4, C3orf64, TMF1, UBE1C, ARL6IP5, LMOD3, MITF, LOC401072, FOXP1, EIF4E3, GPR27,

PROK2, RYBP, SHQ1, LOC727936, PPP4R2, FLJ10213, PDZRN3, CNTN3, ROBO2, ROBO1, GBE1, IGSF4DV_0695_LC3383_Sharp et al. (2005), V_2061_LC3320_Locke et al. (2006), V_4340_LC3314_Wong et al. (2007), V_4341_LC3320_Wong et al. (2007),

V_4342_LC3338_Wong et al. (2007), V_4343_LC3365_Wong et al. (2007) p14.2-p12.13 185191396 185822597 RP11-778D9 RP11-479J12 8 0.631201 -0.279559329 ABCC5, HTR3D, HTR3C, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, ALG3, MGC2408, CAMK2N2, ECE2, PSMD2, EIF4G1, C3orf40, CLCN2, POLR2H, THPO, CHRD, EPHB3 V_4364_LC3931_Wong et al. (2007), V_4365_LC3931_Wong et al. (2007) q27.1

4 39105 119487920 RP11-335H3 RP11-265A2 962 119.448815 -2.341710798

ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, TETRAN, C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131,

LOC650293, DRD5, SLC2A9, WDR1, KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL, SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721, PCDH7, CENTD1, FLJ11017, RELL1, PGM2, TBC1D1, PTTG2, KLF3, TLR10, TLR1, TLR6, LOC92689,

FLJ23235, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS, UGDH, LOC201895, HIP2, SCC-112, N4BP2, RHOH, CHRNA9, FLJ20273, FLJ14001

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0130_LC4464_Iafrate et al. (2004), V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_0700_LC4677_Sharp et al. (2005), V_0701_LC4909_Sharp et al. (2005), V_2066_LC4068_Locke et al. (2006), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_2071_LC4709_Locke et al. (2006), V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_Wong et al. (2007), V_4379_LC4291_Wong et al. (2007), V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007), V_4384_LC4441_Wong et al. (2007), V_4385_LC4531_Wong et al. (2007),

V_4386_LC4542_Wong et al. (2007), V_4387_LC4546_Wong et al. (2007), V_4388_LC p16.3-q264 120975691 123185750 RP11-700N1 RP11-494K24 15 2.210059 -0.492935761 MAD2L1, PRDM5, FLJ23191, TNIP3, GPR103, ANXA5, TMEM155, EXOSC9, CCNA2, BBS7, TRPC3 q274 127375025 134478079 RP11-468H2 RP11-348O12 46 7.103054 -0.586145029 PDZD6, SLC25A31, HSPA4L, PLK4, MGC33302, FLJ21106, LARP2, PGRMC2, PHF17, FLJ30655, LOC132321, PCDH10 V_4412_LC5587_Wong et al. (2007), V_4413_LC5596_Wong et al. (2007), V_4414_LC5605_Wong et al. (2007), V_4415_LC5607_Wong et al. (2007) q28.1-q28.3

4 136999395 158963191 RP11-782E2 RP11-758K21 180 21.963796 -0.594118272

PCDH18, SLC7A11, CCRN4L, ELF2, OSAP, NDUFC1, NARG1, RAB33B, SETD7, MGST2, MAML3, SCOC, CLGN, ELMOD2, UCP1, TBC1D9, RNF150, ZNF330, IL15, INPP4B, USP38, GAB1, SMARCA5, LOC441046, GYPE, GYPB, GYPA, HHIP, ANAPC10, ABCE1, OTUD4, SMAD1, MMAA, LOC646603, LOC152485, LSM6, SLC10A7, C4orf13, POU4F2, NYD-SP14, EDNRA, TMEM34, LOC90826, ARHGAP10, NR3C2, DCAMKL2, LRBA, MAB21L2, RPS3A, SH3D19, ESSPL, PET112L, FBXW7, FLJ32028, TIGD4, ARFIP1, KIAA1727, TRIM2, MND1,

KIAA0922, TLR2, RNF175, SFRP2, DCHS2, PLRG1, FGB, FGA, FGG, LRAT, MGC27016, NPY2R, ASAP, GUCY1A3, GUCY1B3, ACCN5, TDO2, CTSO, PDGFC, GLRB, GRIA2V_0051_LC5838_Iafrate et al. (2004), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007), V_4418_LC5696_Wong et al. (2007), V_4419_LC5731_Wong et al. (2007) q28.3-q32.1

4 159179977 160698846 RP11-89C4 RP11-113D11 12 1.518869 -0.430271247 C4orf18, TMEM144, RXFP1, LOC201725, ETFDH, PPID, FLJ25371 V_4420_LC5892_Wong et al. (2007) q32.1

4 164286156 191137774 RP11-12G4 CTD-2011O21 236 26.851618 -1.209497966

LOC92345, NPY1R, NPY5R, TKTL2, FLJ11184, ANP32C, TRIM61, FLJ31659, TRIM60, FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1, HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4, ASB5, SPCS3, VEGFC, NEIL3, AGA, ODZ3, DCTD, FLJ30277, WWC2, CDKN2AIP, ING2, RWDD4A, FLJ12716, STOX2, ENPP6, IRF2, CASP3, FLJ33167, MLF1IP, ACSL1,

HELT, SLC25A4, SNX25, LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2, TLR3, DKFZP564J102, CYP4V2, KLKB1, F11, MTNR1A, FAT, ZFP42, FLJ25801, FLJ36180, FRG1

V_0054_LC6039_Iafrate et al. (2004), V_0057_LC6244_Iafrate et al. (2004), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007), V_4423_LC6218_Wong et al. (2007), V_4424_LC6244_Wong et al. (2007),


5 72312 38876781 RP11-811I15 RP11-765G9 428 38.804469 -0.654433546

KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4, IRX2, CEI, IRX1, ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2, DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10, BASP1, CDH18, CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN, FLJ11193, PDZD2, GOLPH3, MTMR12, ZFR, SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33,

FLJ25422, SLC1A3, NIPBL, FLJ13231, NUP155, WDR70, GDNF, FLJ39155, LIFR

_ _ _ ( ), _ _ _ ( ), _ _ _ p ( ), _ _ _ p ( ),V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_2082_LC6572_Locke et al. (2006), V_2083_LC6669_Locke et al. (2006), V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong et al. (2007), V_4428_LC6379_Wong et al. (2007), V_4429_LC6379_Wong et al. (2007), V_4430_LC6506_Wong et al. (2007), V_4431_LC6634_Wong et al. (2007), V_4432_LC6634_Wong et al. (2007), V_4433_LC6655_Wong et al. (2007), V_4434_LC6659_Wong et al. (2007), V_4435_LC6669_Wong et al. (2007), V_4436_LC6669_Wong et al. (2007), V_4437_LC6794_Wong et al. (2007), V_4438_LC6794_Wong et al. (2007),

V_5051_LC6639_Wong et al. (2007) p15.33-p13.1

5 39226038 75774664 RP11-138C1 RP11-190G5 508 36.548626 -0.975305861

FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1, LOC389289, ZNF131, MGC42105, HMGCS1, CCL28, FLJ21657, FLJ32363, PAIP1, NNT, FGF10, MRPS30, LOC441070, HCN1, EMB, PARP8, ISL1, PELO, ITGA1, ITGA2, MOCS2, FST, NDUFS4, ARL15, HSPB3, SNAG1, ESM1, GZMK, GZMA, FLJ37927, LOC493869, UNG2, DHX29, SKIV2L2, PPAP2A, FLJ90709, DDX4, IL31RA, IL6ST, FLJ11795, MGC33648, MIER3, GPBP1, DKFZp686D097, PLK2,

C5orf29, RAB3C, PDE4D, DEPDC1B, ELOVL7, ERCC8, NDUFA12L, DKFZP686E215, FLJ37543, KIF2A, HSA9761, IPO11, LOC389293, HTR1A, RNF180, R7BP, P18SRP, SDCCAG10, ADAMTS6, CENPK, PPWD1, TRIM23, FLJ13611, LOC643079, SGTB, NLN, ERBB2IP, SFRS12, FLJ46010, LOC375449, CD180, PIK3R1, SLC30A5, CCNB1, CENPH, MRPS36, CDK7, KENAE, TAF9, RAD17, MARVELD2, OCLN, SMA4, SMA5, SERF1A, SERF1B, SMN1, SMN2, NAIP, GTF2H2, LOC653866, BDP1, MCCC2, CART, MAP1B, MRPS27, PTCD2,

ZNF366, TNPO1, FCHO2, TMEM171, MGC13034, FOXD1, BTF3, ANKRA2, UTP15, RGNEF, ENC1, HEXB, GFM2, TINP1, GCNT4, HMGCR, COL4A3BP, POLK, FLJ35779, SV2C, IQGAP2

V_0063_LC6852_Iafrate et al. (2004), V_0064_LC7017_Iafrate et al. (2004), V_0710_LC7017_Sharp et al. (2005), V_0711_LC7017_Sharp et al. (2005), V_2088_LC7017_Locke et al. (2006), V_2089_LC7017_Locke et al. (2006), V_4439_LC6842_Wong et al. (2007), V_4441_LC6869_Wong et al. (2007), V_4442_LC6871_Wong et al. (2007), V_4443_LC6881_Wong et al. (2007), V_4444_LC6892_Wong et al. (2007), V_4445_LC6923_Wong et al. (2007), V_4446_LC6996_Wong et al. (2007), V_4447_LC7017_Wong et al. (2007), V_4448_LC7017_Wong et al. (2007), V_4449_LC7017_Wong et al. (2007), V_4450_LC7017_Wong et al. (2007), V_4451_LC7017_Wong et al. (2007), V_4452_LC7017_Wong et al. (2007), V_4453_LC7022_Wong et al. (2007),

V_4454_LC7028_Wong et al. (2007), V_4455_LC7036_Wong et al. (2007) p13.1-q13.3

7 40844 27336990 CTD-2245C5 RP11-197I5 246 27.296146 -0.723630063

FAM20C, PDGFA, PRKAR1B, FLJ20397, UNC84A, FLJ44124, C7orf20, CENTA1, COX19, CYP2W1, MGC11257, GPR146, GPR30, ZFAND2A, LOC641901, UNCX4.1, MICALL2, MICAL-L2, INTS1, MAFK, MGC9712, MGC10911, LOC401296, MAD1L1, FTSJ2, NUDT1, SNX8, EIF3S9, CHST12, LFNG, C7orf27, IQCE, TTYH3, AMZ1, GNA12, CARD11, SDK1, FOXK1, KIAA0415, FLJ10324, PAPOLB, MMD2, RBAK, LOC389458, WIPI2, SLC29A4, KIAA1856, FBXL18, ACTB, FSCN1, TRIAD3, C7orf28A, PMS2, JTV1, EIF2AK1, USP42, PSCD3,

MGC12966, RAC1, LOC221955, KDELR2, ZDHHC4, C7orf26, ZNF12, LOC222967, C7orf28B, C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631, NDUFA4, PHF14, TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7, DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693,

C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9, NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1

V_0093_LC9158_Iafrate et al. (2004), V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_2099_LC9264_Locke et al. (2006), V_4519_LC9158_Wong et al. (2007), V_4520_LC9158_Wong et al. (2007), V_4521_LC9158_Wong et al. (2007), V_4522_LC9158_Wong et al. (2007), V_4523_LC9158_Wong et al. (2007), V_4524_LC9249_Wong et al. (2007), V_4525_LC9277_Wong et al. (2007), V_4526_LC9320_Wong et al. (2007), V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007) p22.3-p15.2

7 30863988 31789404 RP11-164O6 RP11-26D1 10 0.925416 -0.309813789 FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16 p15.17 34924286 35514801 RP11-168P10 RP11-351H24 5 0.590515 -0.396450661 TBX20 V_0719_LC9421_Sharp et al. (2005) p14.3

7 40389101 46846468 RP11-19N7 RP11-651K8 65 6.457367 -0.390977065C7orf10, INHBA, GLI3, C7orf25, PSMA2, MRPL32, HECW1, STK17A, FLJ10803, BLVRA, MRPS24, URG4, UBE2D4, WBSCR19, DBNL, PGAM2, POLM, AEBP1, POLD2, MYL7, GCK, YKT6, CAMK2B, NUDCD3, NPC1L1, DDX56, TMED4, OGDH, DKFZp761I212, PPIA, H2AFV,

PURB, MYO1G, CCM2, TBRG4, RAMP3, ADCY1, IGFBP1, IGFBP3 V_4531_LC9464_Wong et al. (2007), V_4532_LC9464_Wong et al. (2007), V_4533_LC9471_Wong et al. (2007) p14.1-p12.37 48208125 55489775 RP11-653O17 RP11-788K14 68 7.28165 -0.45142501 ABCA13, VWC2, ZPBP, ZNFN1A1, FIGNL1, DDC, GRB10, COBL, DKFZp564N247, FLJ45974, MGC33530, SEC61G, EGFR, LANCL2 V_4536_LC9495_Wong et al. (2007), V_4537_LC9518_Wong et al. (2007) p12.3-p11.27 85263782 91599747 RP13-483O24 RP11-371H19 68 6.335965 -0.515416043 GRM3, KIAA1324L, DMTF1, C7orf23, CROT, ABCB4, ABCB1, RPIB9, MCFP, DBF4, ADAM22, SRI, STEAP4, FLJ32110, MGC26647, STEAP1, STEAP2, FLJ21062, DKFZP686A101, CLDN12, PFTK1, FZD1, MTERF, AKAP9, CYP51A1 V_0106_LC9682_Iafrate et al. (2004), V_4546_LC9689_Wong et al. (2007) q21.11-q21.27 106723042 108877939 RP11-454I21 RP11-90N13 22 2.154897 -0.487720456 COG5, GPR22, DUS4L, BCAP29, SLC26A4, CBLL1, SLC26A3, DLD, LAMB1, LAMB4, NRCAM, IPLA2(GAMMA), THAP5, DNAJB9, LOC154907 V_4554_LC9806_Wong et al. (2007) q22.3-q31.17 109740170 115988756 RP11-762D9 RP11-367L24 51 6.248586 -0.733853054 IMMP2L, LRRN3, DOCK4, ZNF277P, IFRD1, FLJ39575, FLJ13576, FLJ31818, GPR85, PPP1R3A, FOXP2, MDFIC, TFEC, TES, CAV2, CAV1 V_0108_LC9826_Iafrate et al. (2004) q31.1-q31.2

7 116744400 158818116 RP11-644B4 CTD-2319F20 428 42.073716 -0.64142434

WNT2, ASZ1, CFTR, CTTNBP2, LSM8, ANKRD7, KCND2, TSPAN12, ING3, FLJ21986, WNT16, FAM3C, LOC392979, PTPRZ1, AASS, LOC389549, CADPS2, RNF133, RNF148, TAS2R16, SLC13A1, FLJ35834, NDUFA5, ASB15, WASL, HYAL4, SPAM1, LOC392982, GPR37, POT1, LOC401398, GRM8, LOC168850, GCC1, ARF5, FSCN3, PAX4, SND1, NAG8, LRRC4, LEP, RBM28, IMPDH1, HIG2, METTL2B, FLJ45340, LOC346653, NYD-SP18, CALU, OPN1SW, NAG6, FLNC, ATP6V1F, IRF5, TNPO3, TSPAN33, SMO, KIAA0828, FAM40B, NRF1,

UBE2H, ZC3HC1, KIAA0265, FLJ14803, LOC136263, CPA2, CPA4, CPA5, CPA1, TSGA14, MEST, COPG2, TSGA13, KLF14, FLJ43663, MKLN1, PODXL, PLXNA4B, FLJ40288, CHCHD3, EXOC4, FLJ32786, SLC35B4, AKR1B1, AKR1B10, LOC441282, BPGM, CALD1, TMEM140, MGC5242, HSPC049, LOC346673, CNOT4, NUP205, SLC13A4, UNQ1940, MTPN, CHRM2, PTN, DGKI, CREB3L2, AKR1D1, TRIM24, LOC136306, ATP6V0A4, MGC14289, ZC3HAV1, TTC26, HSPC268, LUC7L2, FLJ44186, CLEC2L, HIPK2, TBXAS1, PARP12,

KIAA1718, SLC37A3, RAB19B, MKRN1, DENND2A, ADCK2, NDUFB2, BRAF, MRPS33, LOC401410, MULK, KIAA1147, FLJ40852, SSBP1, TAS2R3, TAS2R4, TAS2R5, LOC136242, OR9A4, CLEC5A, TAS2R38, MGAM, TRY1, PRSS1, PRSS2, EPHB6, TRPV6, TRPV5, C7orf34, KEL, OR9A2, OR6V1, PIP, TAS2R39, TAS2R40, GSTK1, TMEM139, CASP2, CLCN1, KIAA0773, FAM131B, ZYX, EPHA1, TAS2R

_ _ _ ( ), _ _ _ ( ), _ _ _ p ( ), _ _ _ p ( ),V_0727_LC10049_Sharp et al. (2005), V_0728_LC10049_Sharp et al. (2005), V_0729_LC10082_Sharp et al. (2005), V_0730_LC10082_Sharp et al. (2005), V_2107_LC10016_Locke et al. (2006), V_2108_LC10016_Locke et al. (2006), V_2109_LC10016_Locke et al. (2006), V_2110_LC10016_Locke et al. (2006),

V_2111_LC10082_Locke et al. (2006), V_4555_LC9863_Wong et al. (2007), V_4556_LC9887_Wong et al. (2007), V_4557_LC9892_Wong et al. (2007), V_4558_LC9916_Wong et al. (2007), V_4559_LC9920_Wong et al. (2007), V_4560_LC9934_Wong et al. (2007), V_4561_LC9937_Wong et al. (2007),

V_4562_LC9987_Wong et al. (2007), V_4563_LC10013_Wong et al. (2007), V_4564_LC10013_Wong et al. (2007), V_4565_LC10013_Wong et al. (2007), V_4566_LC10013_Wong et al. (2007), V_4567_LC10013_Wong et al. (2007), V_4568_LC10016_Wong et al. (2007), V_4569_LC10016_Wong et al. (2007), V_4570_LC10016_Wong et al. (2007), V_4571_LC10016_Wong et al. (2007), V_4572_LC10016_Wong et al. (2007), V_4573_LC10016_Wong et al. (2007),

V_4574_LC10061_Wong et al. (2007) q31.2-q36.3

8 29004 12980751 RP11-130K11 RP11-520F7 116 12.951747 -0.810012657

OR4F21, ZNF596, FBXO25, C8orf42, LOC389607, ERICH1, DLGAP2, CLN8, C8orf61, ARHGEF10, KBTBD11, MYOM2, CSMD1, MCPH1, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, LOC653600, DEFA3, DEFA5, PJCG6, DEFB104A, DEFB104B, DEFB107A, DEFB107B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, SPAG11, SPAG11A, DEFB103B, DEFB103A, DEFB4, DEFB109, CLDN23, MFHAS1, THEX1, PPP1R3B, TNKS, MSRA, UNQ9391, RP1L1, C8orf74, SOX7, PINX1, XKR6, C8orf15, MTMR9, AMAC1L2, C8orf13, BLK,

GATA4, C8orf49, NEIL2, FDFT1, CTSB, DEFB137, DEFB136, DEFB134, DUB3, FAM86B1, DEFB130, LOC440053, LONRF1, C8orf79, KIAA1456

V_0731_LC10225_Sharp et al. (2005), V_0732_LC10225_Sharp et al. (2005), V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp et al. (2005), V_0739_LC10380_Sharp et al. (2005), V_0740_LC10408_Sharp et al. (2005), V_2112_LC10225_Locke et al. (2006), V_2113_LC10225_Locke et al. (2006), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006), V_2116_LC10380_Locke et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_4276_LC10225_Wong et al. (2007), V_4575_LC10225_Wong et al. (2007), V_4576_LC10225_Wong et al. (2007), V_4577_LC10380_Wong et al. (2007), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007), V_4581_LC10380_Wong et al. (2007),

V_4582_LC10408_Wong et al. (2007), V_4583_LC10408_Wong et al. (2007), V_4584_LC10408_Wong et al. (2007) p23.3-p228 20539810 22241498 RP11-426L23 RP11-13A10 19 1.701688 -0.683923002 GFRA2, DOK2, XPO7, NPM2, FGF17, EPB49, RAI16, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2 V_2124_LC10461_Locke et al. (2006), V_2125_LC10461_Locke et al. (2006), V_4586_LC10461_Wong et al. (2007) p21.38 40666763 41822890 RP11-284J3 CTD-2335K6 11 1.156127 -0.513128445 ZMAT4, SFRP1, GOLGA7, SLD5, AGPAT6, FLJ25169, ANK1 p11.219 29028933 29287757 RP11-262O11 RP11-607P10 3 0.258824 -0.318212007 p21.19 34263803 34914899 RP11-75N3 RP11-597L11 7 0.651096 -0.718267555 NUDT2, KIAA1161, C9orf24, C9orf25, DNAI1, UNQ470, CNTFR, C9orf23, DCTN3, ARID3C, OPRS1, GALT, IL11RA, CCL27, CCL19, CCL21 p13.3

9 75221912 108696885 RP11-722D8 RP11-214G2 314 33.474973 -1.398055399

AGTPBP1, MAK10, GOLPH2, C9orf153, HBLD2, ZCCHC6, GAS1, FLJ45537, DAPK1, CTSL1, HCTSL-s, C9orf79, CCRK, SPIN, C9orf121, C9orf47, EDG3, SHC3, CKS2, SECISBP2, LOC349236, SEMA4D, GADD45G, DIRAS2, SYK, AUH, NFIL3, ROR2, SPTLC1, IARS, NOL8, RP11-19J3.3, OGN, OMD, ASPN, ECM2, IPPK, BICD2, ANKRD19, ZNF484, FGD3, SUSD3, C9orf89, NINJ1, WNK2, C9orf10OS, C9orf10, PHF2, BARX1, PTPDC1, ZNF169, HIATL1, FBP2, FBP1, C9orf3, FANCC, PTCH1, LOC375748, C9orf102, HSD17B3, SLC35D2, ZNF367,

HABP4, CDC14B, C9orf21, ZNF510, FLJ16636, FAM22G, CTSL2, ZNF322B, KIAA1529, TDRD7, TMOD1, C9orf97, NCBP1, XPA, FOXE1, C9orf156, HEMGN, ANP32B, NANS, TRIM14, CORO2A, TBC1D2, GABBR2, ANKS6, GALNT12, COL15A1, TGFBR1, ALG2, SEC61B, NR4A3, STX17, TXNDC4, INVS, TEX10, C9orf30, TMEFF1, LOC347273, PRG-3, BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B,

V_0129_LC11470_Iafrate et al. (2004), V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005), V_4643_LC11388_Wong et al. (2007), V_4644_LC11438_Wong et al. (2007), V_4645_LC11529_Wong et al. (2007), V_4646_LC11551_Wong et al. (2007), V_4647_LC11560_Wong et al. (2007), V_4648_LC11560_Wong et al. (2007), V_4649_LC11564_Wong et al. (2007), V_4650_LC11572_Wong et al. (2007), V_4651_LC11606_Wong et al. (2007) q21.13-q31.2

10 63259 38455760 RP11-631M21 RP11-677N1 360 38.392501 -0.631034221

RBM17, PFKFB3, PRKCQ, SFMBT2, ITIH5, ITIH2, KIN, ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2, USP6NL, ECHDC3, C10orf47, UPF2, DHTKD1, SEC61A2, NUDT5, C10orf7, CAMK1D, CCDC3, OPTN, MCM10, C10orf49, PHYH, SEPHS1, C10orf30, PRPF18, FRMD4A, FAM107B, ARMETL1, HSPA14, SUV39H2, DCLRE1C, MEIG1, THEDC1, ACBD7, C10orf111, RPP38, NMT2, C10orf38, ITGA8, C10orf97, PTER, C1QL3, RSU1, CUBN, DNMT2, VIM, ST8SIA6, PTPLA, STAM, LOC340843, MRC1, MRC1L1, SLC39A12, CACNB2, NSUN6, ARL5B, PLXDC2, NEBL, C10orf113, C10orf114, FLJ45187, MLLT10, DNAJC1, COMMD3, PCGF4, SPAG6, PIP5K2A, ARMC3, MSRB2, PTF1A, C10orf67, KIAA1217, ARHGAP21, PRTFDC1, C10orf63, THNSL1, GPR158, MYO3A, GAD2, APBB1IP, PDSS1, ABI1,

ANKRD26, YME1L1, MASTL, ACBD5, LOC387646, PTCHD3, RAB18, IRXL1, ARMC4, MPP7, WAC, BAMBI, LYZL1, SVIL, PAPD1, MAP3K8, LYZL2, ZNF438, ZEB1, ARHGAP12, KIF5B, EPC1, CCDC7, C10orf68, ITGB1, NRP1, PARD3, CUL2, CREM, C10orf9, CX40.1, FZD8, ANKRD30A, ZNF248, ZNF25, ZNF33A, ZNF37A

V_4664_LC11931_Wong et al. (2007), V_4665_LC12095_Wong et al. (2007), V_4666_LC12101_Wong et al. (2007), V_4667_LC12118_Wong et al. (2007), V_4668_LC12124_Wong et al. (2007), V_4670_LC12172_Wong et al. (2007), V_4671_LC12175_Wong et al. (2007), V_4672_LC12205_Wong et al. (2007), V_4673_LC12210_Wong et al. (2007), V_4674_LC12215_Wong et al. (2007), V_4675_LC12231_Wong et al. (2007), V_4676_LC12245_Wong et al. (2007) p15.3-p11.21

10 42416141 54434644 RP11-770F9 RP11-640E12 125 12.018503 -0.485204067

ZNF11B, BMS1L, RET, GALNACT-2, RASGEF1A, FXYD4, HNRPF, ZNF239, ZNF485, ZNF32, CXCL12, RASSF4, C10orf10, C10orf25, ZNF22, OR13A1, ALOX5, ANUBL1, FAM21C, CTGLF1, LOC594834, PDZK5B, SYT15, KIAA0514, PPYR1, ANXA8, LOC653107, ZNF488, RBP3, GDF2, GDF10, PTPN20A, PTPN20B, FRMPD2, MAPK8, ARHGAP22, LRRC18, C10orf72, C10orf71, LOC644168, ERCC6, PGBD3, SLC18A3, CHAT, C10orf53, OGDHL, PARG, CTGLF5, CTGLF4, MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-

564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2

V_0136_LC12274_Iafrate et al. (2004), V_0764_LC12274_Sharp et al. (2005), V_2152_LC12261_Locke et al. (2006), V_2153_LC12274_Locke et al. (2006), V_2154_LC12274_Locke et al. (2006), V_2155_LC12288_Locke et al. (2006), V_2156_LC12305_Locke et al. (2006), V_4681_LC12274_Wong et al. (2007), V_4682_LC12274_Wong et al. (2007), V_4683_LC12274_Wong et al. (2007), V_4684_LC12274_Wong et al. (2007), V_4685_LC12274_Wong et al. (2007), V_4686_LC12298_Wong et al. (2007), V_4687_LC12274_Wong et al. (2007), V_4688_LC12274_Wong et al. (2007), V_4689_LC12274_Wong et al. (2007), V_4690_LC12274_Wong et al. (2007), V_4691_LC12288_Wong et al. (2007), V_4692_LC12288_Wong et al. (2007), V_4693_LC12288_Wong et al. (2007) q11.21-q21.1

10 56628164 70036336 RP11-88B18 RP11-524O24 137 13.408172 -0.443053986ZWINT, IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2, NRBF2, JMJD1C, REEP3, CTNNA3, LRRTM3, DNAJC12, SIRT1, HERC4, FLJ14437,

ATOH7, MAWBP, HNRPH3, RUFY2, DNA2L, SLC25A16, CXXC6V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007), V_4696_LC12350_Wong et al. (2007), V_4697_LC12385_Wong et al. (2007), V_4698_LC12387_Wong et al. (2007), V_4699_LC12389_Wong et al. (2007), V_4700_LC12395_Wong et al. (2007), V_4701_LC12398_Wong et al. (2007) q21.1-q21.3

10 70808609 73576413 RP11-664D2 RP11-799K15 28 2.767804 -0.354322439 HK1, TACR2, TSPAN15, NEUROG3, C10orf35, COL13A1, H2AFY2, AMID, TYSND1, SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, NODAL, KIAA1274, PRF1, ADAMTS14, C10orf27, SGPL1, PCBD1, UNC5B, SLC29A3, CDH23, C10orf54, PSAP, CHST3, SPOCK2, ASCC1 q21.3-q22.110 74961403 75408745 RP11-316E16 RP11-390A15 4 0.447342 -0.409829021 USP54, MYOZ1, SYNPO2L, SEC24C, FUT11, CHCHD1, KIAA0913, NDST2, CAMK2G, C10orf55, PLAU q22.2

10 76068135 97083137 RP11-693K23 RP11-664M18 183 21.015002 -0.409917129

ADK, MYST4, DUPD1, DUSP13, SAMD8, VDAC2, COMTD1, LOC439985, ZNF503, C10orf11, KCNMA1, DLG5, POLR3A, RPS24, RAI17, PPIF, C10orf56, SFTPA2, SFTPA1, SFTPD, C10orf57, PLAC9, ANXA11, MAT1A, DYDC1, DYDC2, C10orf58, TSPAN14, SH2D4B, NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1, WAPAL, OPN4, LDB3, BMPR1A, MMRN2, SNCG, C10orf116, GLUD1, FAM35A, MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1, PCGF5, HECTD2, PPP1R3C, TNKS2, FGFBP3, BTAF1, CPEB3, IDE, KIF11, HHEX, EXOC6, CYP26C1, CYP26A1, FER1L3, CEP55, GPR120, RBP4, PDE6C, C10orf4, LGI1, TMEM20,

PLCE1, NOC3L, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, C10orf129, PDLIM1, SORBS1

V_0138_LC12468_Iafrate et al. (2004), V_0762_LC12488_Sharp et al. (2005), V_0765_LC12481_Sharp et al. (2005), V_2157_LC12477_Locke et al. (2006), V_2158_LC12478_Locke et al. (2006), V_2159_LC12481_Locke et al. (2006), V_2160_LC12485_Locke et al. (2006), V_2161_LC12488_Locke et al. (2006), V_4703_LC12451_Wong et al. (2007), V_4704_LC12478_Wong et al. (2007), V_4705_LC12506_Wong et al. (2007), V_4706_LC12521_Wong et al. (2007),

V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007) q22.2-q23.3310 99135915 100341805 RP11-318M12 RP11-707M8 10 1.20589 -0.317525253 KIAA0690, PGAM1, EXOSC1, ZDHHC16, MMS19L, UBTD1, ANKRD2, C10orf65, C10orf62, C10orf83, PI4KII, AVPI1, ZFYVE27, SFRP5, C10orf132, CRTAC1, C10orf28, LOXL4, C10orf33, HPS1, HPSE2 V_4710_LC12569_Wong et al. (2007) q24.1-q24.2

10 102120730 118611337 RP11-188N23 RP11-35N3 156 16.490607 -0.610582608

WNT8B, SEC31L2, NDUFB8, HIF1AN, PAX2, C10orf6, SEMA4G, MRPL43, PEO1, LZTS2, PDZD7, SFXN3, KAZALD1, TD1, TLX1, LBX1, BTRC, POLL, RP11-529I10., FBXW4, FGF8, NPM3, MGEA5, KCNIP2, C10orf76, HPS6, LDB1, PPRC1, NOLC1, ELOVL3, PITX3, GBF1, NFKB2, PSD, FBXL15, CUEDC2, C10orf95, C10orf77, ACTR1A, SUFU, TRIM8, ARL3, SFXN2, C10orf26, CYP17A1, C10orf32, AS3MT, CNNM2, NT5C2, INA, PCGF6, TAF5, USMG5, PDCD11, FAM26B, FAM26C, NEURL, SH3PXD2A, OBFC1, SLK, COL17A1, C10orf78, C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SORCS3, SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1, DUSP5, CSPG6, PDCD4, SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1,

C10orf118, TDRD1, VWA2, KIAA1914, ABLIM1, KIAA1600, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3, PNLIP, PNLIPRP1, PNLIPRP2, C10orf82, HSPA12A V_0766_LC12664_Sharp et al. (2005), V_4711_LC12583_Wong et al. (2007), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007) q24.31-q25.3

10 119528018 135354737 RP11-296L23 RP11-1065F16 146 15.826719 -0.713511395

RAB11FIP2, C10orf84, PRLHR, C10orf46, NANOS1, EIF3S10, FAM45A, FAM45B, SFXN4, PRDX3, GRK5, RGS10, TIAL1, BAG3, INPP5F, C10orf119, SEC23IP, PPAPDC1A, C10orf85, BRWD2, FGFR2, ATE1, C10orf86, TACC2, C10orf87, PLEKHA1, HTRA1, DMBT1, C10orf120, CUZD1, FAM24B, FAM24A, C10orf88, C10orf89, IKZF5, ACADSB, HMX2, BUB3, GPR26, CPXM2, GALNAC4S-6ST, OAT, LHPP, FAM53B, LOC399818, KIAA0157, ZRANB1, CTBP2, C10orf137, MMP21, UROS, BCCIP, DHX32, FANK1, ADAM12, C10orf90,

LOC728158, DOCK1, FLJ45557, NPS, FLJ46831, CLRN3, PTPRE, MKI67, MGMT, EBF3, TXNL2, TCERG1L, PPP2R2D, BNIP3, DPYSL4, STK32C, LRRC27, PWWP2, C10orf91, INPP5A, NKX6-2, C10orf92, C10orf93, GPR123, KNDC1, UTF1, VENTX, ADAM8, TUBGCP2, ZNF511, DRD1IP, PRAP1, C10orf125, ECHS1, PAOX, MTG1, SPRN, CYP2E1, SYCE1, FLJ44653, LOC441581, DUX4

V_0370_LC12807_Le Caignec et al. (2005), V_2162_LC12807_Locke et al. (2006), V_4714_LC12735_Wong et al. (2007), V_4715_LC12747_Wong et al. (2007), V_4716_LC12779_Wong et al. (2007), V_4717_LC12807_Wong et al. (2007), V_4718_LC12807_Wong et al. (2007), V_4719_LC12807_Wong et al. (2007), V_4720_LC12807_Wong et al. (2007), V_4721_LC12807_Wong et al. (2007), V_4722_LC12807_Wong et al. (2007), V_4723_LC12807_Wong et al. (2007),

V_4724_LC12807_Wong et al. (2007) q26.11-q26.3

11 74445 3965192 RP11-182E22 RP11-455N14 28 3.890747 -0.57940943

SCGB1C1, ODF3, BET1L, RIC8A, SIRT3, PSMD13, NALP6, ATHL1, IFITM5, IFITM2, IFITM1, IFITM3, B4GALNT4, PKP3, SIGIRR, TMEM16J, PTDSS2, RNH1, HRAS, LRRC56, C11orf35, RASSF7, KIAA1542, IRF7, MUCDHL, SCT, DRD4, DEAF1, TMEM80, EPS8L2, TALDO1, PDDC1, CEND1, SLC25A22, LRDD, RPLP2, PNPLA2, MGC45840, CD151, POLR2L, TSPAN4, CHID1, AP2A2, MUC2, TOLLIP, BRSK2, HCCA2, DUSP8, KRTAP5-1, KRTAP5-2, KRTAP5-3, KRTAP5-4, KRTAP5-5, KRTAP5-6, CTSD, SYT8, TNNI2, LSP1, TNNT3, MRPL23,

IGF2, IGF2AS, INS-IGF2, INS, TH, ASCL2, TSPAN32, CD81, TSSC4, TRPM5, KCNQ1, KCNQ1DN, CDKN1C, SLC22A18AS, SLC22A18, PHLDA2, NAP1L4, CARS, OSBPL5, C11orf36, MRGPRE, ZNF195, ART5, ART1, CHRNA10, NUP98, FRAG1, RHOG, STIM1V_4725_LC12865_Wong et al. (2007), V_4726_LC12865_Wong et al. (2007), V_4728_LC12896_Wong et al. (2007), V_4729_LC12896_Wong et al. (2007),

V_4730_LC12916_Wong et al. (2007) p15.5-p15.411 5303162 5736223 RP11-374A24 RP11-622B13 4 0.433061 -0.613407815 OR51B5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, UBQLNL, OR52H1, OR52B6, TRIM6, TRIM6-TRIM34, TRIM34, TRIM5, TRIM22, OR56B1, OR52N4 p15.411 8927573 10289409 RP11-779O6 RP11-726L17 12 1.361836 -0.480557031 TMEM9B, NRIP3, SCUBE2, RAB6IP1, TMEM41B, IPO7, ZNF143, WEE1, SWAP70, SBF2, ADM V_0143_LC12968_Iafrate et al. (2004) p15.411 13538104 15064654 RP11-282P13 RP11-39F19 14 1.52655 -0.622799515 MLSTD2, SPON1, RRAS2, COPB, PSMA1, PDE3B, CYP2R1, CALCA, CALCB p15.211 15883681 17218047 RP11-710A4 RP11-689L7 14 1.334366 -0.533618233 SOX6, C11orf58, PLEKHA7, RPS13, PIK3C2A V_4731_LC12993_Wong et al. (2007) p15.2-p15.111 23124432 23814678 RP11-602G2 RP11-230C19 5 0.690246 -0.456006582 p14.311 30984004 31769110 RP11-694H9 RP11-702F20 10 0.785106 -0.501947297 DCDC5, DCDC1, ZCSL3, IMMP1L, ELP4, PAX6 V_4733_LC13087_Wong et al. (2007) p14.1-p1311 32351909 33454131 RP11-284G17 RP11-319G20 14 1.102222 -0.477366385 WT1, WIT1, hfl-B5, CCDC73, PRRG4, QSER1, DEPDC7, TCP11L1, CSTF3, HIPK3 V_4735_LC13093_Wong et al. (2007) p1311 38155467 40050342 RP11-787M10 RP11-812G3 17 1.894875 -0.542282349 p1211 41849453 46400149 RP11-584I10 RP11-164L18 43 4.550696 -0.632096941 API5, TTC17, HSD17B12, ALKBH3, LOC390110, PHACS, EXT2, ALX4, CD82, TSPAN18, TP53I11, PRDM11, SYT13, FLJ41423, CHST1, SLC35C1, CRY2, MAPK8IP1, LOC143678, PEX16, GYLTL1B, PHF21A, CREB3L1, DGKZ, MDK, CHRM4, FLJ20294 V_4740_LC13164_Wong et al. (2007) p12-p11.2

11 47793020 55630543 RP11-449K10 RP11-129H9 40 7.837523 -0.509426277NUP160, PTPRJ, OR4B1, OR4X2, OR4X1, OR4S1, OR4C3, OR4A47, FOLH1, OR4C13, OR4C12, OR4A5, OR4C46, TRIM48, OR4A16, OR4A15, OR4C15, OR4C16, OR4C11, OR4P4, OR4S2, OR4C6, OR5D13, OR5D14, OR5L1, OR5D18, OR5L2, OR5D16, TRIM51, OR5W2,

OR5I1, OR10AG1, OR5F1, OR5AS1, OR8I2, OR8H2V_0147_LC13187_Iafrate et al. (2004), V_2167_LC13212_Locke et al. (2006), V_4742_LC13206_Wong et al. (2007), V_4743_LC13212_Wong et al. (2007),

V_5013_LC13187_Wong et al. (2007) p11.2-q1111 57055930 57551130 RP11-781C10 RP11-733J17 7 0.4952 -0.458138371 UBE2L6, SERPING1, YPEL4, HEAB, ZDHHC5, MED19, TXNDC14, C11orf31, CTNND1, OR9Q1 V_4744_LC13225_Wong et al. (2007) q12.111 58070936 58461380 RP11-790F1 RP11-780O24 4 0.390444 -0.526542265 LPXN, ZFP91, CNTF, GLYAT, GLYATL2 V_0149_LC13233_Iafrate et al. (2004) q12.111 58717960 59570359 RP11-447J9 RP11-475N19 13 0.852399 -0.703462716 MPEG1, OR5AN1, OR5A2, OR5A1, OR4D6, OR4D10, OR4D11, OR4D9, OSBP, FLJ36874, OR10V1, STX3A, MRPL16, GIF, TCN1, TMEM122 V_4746_LC13237_Wong et al. (2007) q12.1

11 61528804 63462089 RP11-328A20 RP11-472L10 22 1.933285 -0.579828652INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, RBM21, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, LOC751071, LOC790955, LOC51035, LOC221091, BSCL2, GNG3, HNRPUL2, TTC9C, ZBTB3,

POLR2G, TAF6L, LOC374395, MGC3196, NXF1, STX5, WDR74, SLC3A2, CHRM1, SLC22A6, SLC22A8, MGC34821, LOC387601, SLC22A10, SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, HRASLS3, DKFZP564J086, RTN3, LOC144097, MARK2, RCOR2 V_0150_LC13257_Iafrate et al. (2004), V_4749_LC13256_Wong et al. (2007) q12.3-q13.1

11 64416846 69708908 CTD-2380K20 RP11-240K12 49 5.292062 -0.809167587

KIAA0404, PPP2R5B, GPHA2, LOC283129, BATF2, ARL2, SNX15, SAC3D1, NAALADL1, CDCA5, ZFPL1, C11orf2, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, LOC387778, CAPN1, FLJ16331, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FKSG44, SCYL1, LTBP3, SSSCA1, FAM89B, KCNK7, MAP3K11, SIPA1, RELA, HTATIP, RNASEH2C, DKFZp761E198, OVOL1, FLJ30934, CFL1, MUS81, EFEMP2, CTSW, FIBP, DIPA, FOSL1, C11orf68, DRAP1, TSGA10IP, SART1, MGC11102, BANF1, CST6, CATSPER1, GAL3ST3, SF3B2, PACS1, KLC2,

RAB1B, CNIH2, YIF1A, MGC33486, CD248, RIN1, BRMS1, B3GNT1, SLC29A2, NPAS4, MRPL11, PELI3, DPP3, BBS1, ZDHHC24, ACTN3, CTSF, CCDC87, CCS, RBM14, RBM4, RBM4B, SPTBN2, FLJ22531, RCE1, PC, LRFN4, SYT12, RHOD, FBXL11, ADRBK1, ANKRD13D, SSH3, POLD4, CLCF1, RAD9A, PPP1CA, TBC1D10C, RPS6KB2, PTPRCAP, CORO1B, GPR152, CABP4, TMEM134, AIP, PITPNM1, CDK2AP2, CABP2, GSTP1, C11orf72, NDUFV1, NUDT8, TBX10, ACY3, ALDH3B2, UNC93B1, ALDH3B1, NDUFS8, TCIRG1, CHKA,

SUV420H1, C11orf24, LRP5, SAPS3, GAL, MTL5, CPT1A, MRPL21, IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A V_2169_LC13288_Locke et al. (2006), V_4754_LC13285_Wong et al. (2007), V_4755_LC13316_Wong et al. (2007) q13.1-q13.3

11 75425976 80393043 RP11-680K14 CTD-2001H10 39 4.967067 -1.193190789 UVRAG, WNT11, PRKRIR, C11orf30, LRRC32, LRRC54, PHCA, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1, AQP11, CLNS1A, HBXAP, PTD015, INTS4, KCTD14, THRSP, NDUFC2, ALG8, LOC283219, GAB2, NARS2 V_0151_LC13373_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006), V_4727_LC13373_Wong et al. (2007) q13.5-q14.1

11 111065480 134436732 RP11-404A3 CTD-2220K2 222 23.371252 -0.89325609

FAM55A, FAM55D, FAM55B, IGSF4, BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, KIAA0999, PAFAH1B2, SIDT2, TAGLN, PCSK7, DKFZp547C195, BACE1, CEP164, DSCAML1, FXYD2, FXYD6, TMPRSS13, IL10RA, TMPRSS4, SCN4B, SCN2B, AMICA1, LOC196264, EVA1, CD3E, CD3D, CD3G, UBE4A, ATP5L, MLL, FLJ11783, LOC143941, TMEM25, C11orf60, ARCN1, PHLDB1, TREH, DDX6, BLR1, BCL9L, UPK2, FOXR1, CCDC84, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX, DPAGT1, TMEM24, MIZF, ABCG4, NOD9, PDZD3, LOC283152, CBL, MCAM, RNF26, C1QTNF5, MFRP, USP2, THY1, PVRL1, TRIM29, OAF, POU2F3, TMEM136, ARHGEF12, GRIK4, LRRC35, TECTA, SC5DL, SORL1, BRCC2, STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1,

PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN, VSIG2, ESAM, C11orf61, ROBO3, ROBO4, HEPACAM, HEPN1, CCDC15, SLC37A2, LOC219854, PKNOX2, FEZ1, EI24, STT3A, CHEK1, ACRV1, PATE, C11orf38, HYLS1, P

V_0158_LC13592_Iafrate et al. (2004), V_0159_LC13605_Iafrate et al. (2004), V_4763_LC13589_Wong et al. (2007), V_4764_LC13705_Wong et al. (2007), V_5037_LC13656_Wong et al. (2007) q23.1-q25

Gains

Losses

OVMANA

13 17918020 21256298 RP11-77P19 RP11-25L11 27 3.338278 -0.948007342 TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9 V_0167_LC14662_Iafrate et al. (2004), V_4797_LC14674_Wong et al. (2007) q11-q12.1113 21737873 22280870 RP11-288A14 CTD-2016N15 4 0.542997 -0.334000831 q12.11-q12.12

13 67840459 97926337 RP11-597C19 RP11-599C8 240 30.085878 -0.778452358KLHL1, DACH1, LOC440145, FLJ22624, KIAA1008, C13orf24, KLF5, KLF12, TBC1D4, COMMD6, UCHL3, LMO7, KCTD12, CLN5, FBXL3, MYCBP2, SCEL, FLJ30046, EDNRB, POU4F1, C13orf7, C13orf10, NDFIP2, SPRY2, SLITRK1, SLITRK6, SLITRK5, GPC5, GPC6, DCT,

TGDS, GPR180, SOX21, ABCC4, CLDN10, DZIP1, DNAJC3, UGCGL2, HS6ST3, OXGR1, MBNL2, RAP2A, RANBP5, FARP1, RNF113B, STK24

V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_4480_LC14964_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007),

V_4815_LC15123_Wong et al. (2007) q21.33-q32.2

15 18276592 61292877 RP11-607H20 RP11-69G7 395 43.016285 -1.676561706

LOC283755, POTE15, OR4M2, OR4N4, LOC650137, TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR,

FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C, GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39,

TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK,MFAP1, WDR76, FRMD5, CASC4, CTDSPL2, EIF3S1, KIAA1840, B2M, RNF36, C15orf43, SORD, DUOX2, DUOXA2, NIP, DUOX1, SHF, S

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0188_LC16238_Iafrate et al. (2004), V_0775_LC16090_Sharp et al. (2005), V_0776_LC16090_Sharp et al. (2005), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_2180_LC16090_Locke et al. (2006), V_2181_LC16090_Locke et al. (2006), V_2182_LC16090_Locke et al. (2006), V_2183_LC16090_Locke et al. (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4861_LC16090_Wong et al. (2007), V_4862_LC16090_Wong et al. (2007), V_4863_LC16090_Wong et al. (2007), V_4864_LC16090_Wong et al. (2007),

V_4865_LC16090_Wong et al. (2007), V_4866_LC16090_Wong et al. (2007), V_4867_ q11.1-q22.2

15 61813990 89442753 RP11-424C12 RP11-2O19 228 27.628763 -0.773309209

HERC1, DAPK2, FAM96A, SNX1, SNX22, PPIB, CSNK1G1, KIAA0101, TRIP4, ZNF609, OAZ2, RBPMS2, C15orf20, PLEKHQ1, ANKDD1A, SPG21, MTFMT, OSTbeta, RASL12, PDCD7, CLPX, CILP, PARP16, PUNC, NOPE, DPP8, PTPLAD1, C15orf44, SLC24A1, DENND4A, RAB11A, MEGF11, MGC4562, FLJ20516, MAP2K1, SNAPC5, RPL4, ZWILCH, LCTL, SMAD6, SMAD3, FLJ11506, IQCH, MAP2K5, LBXCOR1, PIAS1, CALML4, CLN6, FEM1B, ITGA11, CORO2B, ANP32A, NOX5, SPESP1, GLCE, PAQR5, KIF23, RPLP1, LOC729416, TLE3, UACA, LARP6, THAP10, LRRC49, THSD4, NR2E3, MYO9A, SENP8, GRAMD2, PKM2, PARP6, BRUNOL6, HEXA, FLJ27523, ARIH1, GOLGA, BBS4, ADPGK, NEO1, HCN4, LOC283677, NPTN, CD276, LOC388135, TBC1D21, LOXL1, STOML1, PML, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, SEMA7A, UBL7, ARID3B, CLK3, LSM16, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, SCAMP2, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC, C15orf39, COMMD4, NEIL1, MAN2C1, SIN3A, PTPN9, SNUPN, IMP3, SH3PX3, CSPG4, ODF3L1, UBE2Q2, FBXO22, NRG4, C15orf27, ETFA, ISL2, ZNF291, RCN2, PSTPIP1, TSPAN3, HMG20A, LRRN6A, TBC1D2B, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, LOC123688, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, MORF4L1, CTSH, RASGRF1,

TMED3, KIAA1024, MTHFS, C15orf37, BCL2A1, ZA20D3, FAH, ARNT2, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5, TMC3, R

V_0189_LC16389_Iafrate et al. (2004), V_0190_LC16450_Iafrate et al. (2004), V_0786_LC16331_Sharp et al. (2005), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2194_LC16374_Locke et al. (2006), V_2195_LC16389_Locke et al. (2006), V_2196_LC16398_Locke et al. (2006), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4904_LC16360_Wong et al. (2007), V_4905_LC16412_Wong et al. (2007), V_4906_LC16417_Wong et al. (2007), V_4907_LC16456_Wong et al. (2007),

V_4908_LC16467_Wong et al. (2007), V_4909_LC16491_Wong et al. (2007), V_4910_LC16491_Wong et al. (2007) q22.31-q26.115 91053658 91291804 RP11-732G1 CTD-2094H10 3 0.238146 -0.625479154 CHD2 q26.115 96647374 99008349 RP11-659J11 RP11-366F16 21 2.360975 -0.614159631 FLJ39743, IGF1R, DMN, TTC23, LRRC28, MEF2A, LYSMD4, LOC400464, ADAMTS17, FLJ42289, LASS3, LINS1, ASB7 q26.315 99979620 100260946 RP11-89K11 RP11-95F11 3 0.281326 -0.386591834 TM2D3, TARSL2, OR4F6, OR4F15 V_0193_LC16579_Iafrate et al. (2004), V_2202_LC16579_Locke et al. (2006) q26.3

16 11139 11370814 RP11-344L6 RP11-709E10 104 11.359675 -0.708251469

MGC15416, KIAA1924, RHOT2, RHBDL1, STUB1, LOC339123, WDR24, FBXL16, METRN, C16orf24, C16orf25, HAGHL, NARFL, MSLN, MPFL, RPUSD1, CHTF18, GNG13, LOC388199, TMEM112, SOX8, SSTR5, C1QTNF8, CACNA1H, TPSG1, TPSB2, TPSAB1, TPSD1, UBE2I, BAIAP3, MGC24381, GNPTG, C16orf28, UNKL, LOC283951, CLCN7, LOC390667, TELO2, IFT140, C16orf30, CRAMP1L, C16orf34, MAPK8IP3, NME3, MRPS34, EME2, SPSB3, NUBP2, IGFALS, HAGH, FAHD1, MGC35212, HS3ST6, SEPX1, RPL3L, NDUFB10,

LOC91561, RPS2, RNF151, TBL3, NOXO1, GFER, SYNGR3, ZNF598, SLC9A3R2, NTHL1, TSC2, PKD1, RAB26, TRAF7, CASKIN1, GBL, MGC21830, LOC283871, E4F1, DNASE1L2, DCI, RNPS1, ABCA3, CCNF, C16orf59, NTN2L, KIAA1171, ATP6V0C, AMDHD2, CP-23, PDPK1, LOC283874, KCTD5, PRSS27, SRRM2, TCEB2, PRSS33, PRSS21, LOC124220, PRSS22, LOC114984, FLYWCH1, KREMEN2, PAQR4, PKMYT1, CLDN9, CLDN6, TNFRSF12A, HCFC1R1, THOC6, MMP25, IL32, ZNF206, ZNF205, ZNF213, OR1F1, ZNF200, MEFV,

ZNF263, TIGD7, ZNF75A, OR2C1, ZNF434, ZNF174, ZNF597, FLJ14154, LOC646174, CLUAP1, NOD3, BTBD12, DNASE1, TRAP1, CREB

V_4779_LC16593_Wong et al. (2007), V_4912_LC16593_Wong et al. (2007), V_4913_LC16593_Wong et al. (2007), V_4914_LC16593_Wong et al. (2007), V_4915_LC16593_Wong et al. (2007), V_4916_LC16593_Wong et al. (2007), V_4917_LC16593_Wong et al. (2007), V_4918_LC16593_Wong et al. (2007), V_4919_LC16593_Wong et al. (2007), V_4920_LC16652_Wong et al. (2007), V_4921_LC16658_Wong et al. (2007), V_4922_LC16660_Wong et al. (2007) p13.3-p13.13

16 11683993 69839688 RP11-697O3 RP11-783N15 521 58.155695 -1.103305766

TXNDC11, ZC3H7A, RSL1D1, GSPT1, TNFRSF17, RUNDC2A, LOC92017, FLJ11151, ERCC4, MKL2, PARN, BFAR, PLA2G10, NOMO1, NPIP, KIAA0251, NTAN1, RRN3, FLJ39599, C16orf45, LKAP, NDE1, MYH11, C16orf63, ABCC1, ABCC6, XYLT1, NOMO2, NOMO3, RPS15A, ARL6IP, SMG1, TMC7, COQ7, LOC162073, SYT17, TMC5, MIR16, CP110, MGC16824, LOC400506, MGC35048, GPRC5B, GPR139, GP2, UMOD, PDILT, FLJ20581, LOC123876, ACSM2, ACSM1, THUMPD1, ACSM3, MGC16943, LOC81691, DCUN1D3, LOC57149, DNAH3, LOC57146, ZP2, ANKS4B, CRYM, LOC400509, METTL9, IGSF6, OTOA, UQCRC2, MGC50721, EEF2K, POLR3E, CDR2, HS3ST2, USP31, SCNN1G, SCNN1B, COG7, GGA2, EARS2, KIAA1970, UBPH, NDUFAB1, PALB2, DCTN5, PLK1, ERN2, LOC63928, PRKCB1, CACNG3, RBBP6, FLJ45256, TNRC6A, SLC5A11, ARHGAP17, LCMT1, AQP8, ZKSCAN2, HS3ST4, TNT, JMJD5, NSMCE1, IL4R, IL21R, GTF3C1, KIAA0556, MGC18079, XPO6, SBK1, CLN3, APOB48R, IL27, NUPR1, LOC112869, SULT1A2, SULT1A1, LOC390688, EIF3S8,

LOC440350, ATXN2L, TUFM, SH2B, ATP2A1, RABEP2, CD19, NFATC2IP, SPIN1, LAT, SPN, QPRT, C16orf54, MAZ, PRRT2, C16orf53, MVP, CDIPT, SEZ6L2, ASPHD1, KCTD13, LOC124446, TAOK2, HIRIP3, FLJ90652, DOC2A, FAM57B, ALDOA, PPP4C, TBX6, YPEL3, GDPD3, MAPK3, CORO1A, BOLA2, BOLA2B, GIYD1, GIYD2, SULT1A3, SULT1A4, CD2BP2, TBC1D10B, MYLPF, ZNF553, ZNF771, XTP3

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0678_LC16967_Sharp et al. (2005), V_0793_LC16761_Sharp et al. (2005), V_0794_LC16821_Sharp et al. (2005), V_0795_LC16821_Sharp et al. (2005), V_0796_LC16821_Sharp et al. (2005), V_0797_LC16959_Sharp et al. (2005), V_2043_LC16967_Locke et al. (2006), V_2203_LC16733_Locke et al. (2006), V_2204_LC16736_Locke et al. (2006), V_2205_LC16736_Locke et al. (2006), V_2206_LC16761_Locke et al. (2006), V_2207_LC16761_Locke et al. (2006), V_2208_LC16802_Locke et al. (2006), V_2209_LC16817_Locke et al. (2006), V_2210_LC16821_Locke et al. (2006), V_2211_LC16821_Locke et al. (2006), V_2212_LC16821_Locke et al. (2006), V_2213_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et al. (2006), V_2215_LC16821_Locke et al. (2006), V_2216_LC16959_Locke et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4923_LC16730_Wong et al. (2007), V_4924_LC16730_Wong et al. (2007), V_4925_LC16730_Wong et al. (2007), V_4926_LC16734_Wong et al. (2007), V_4927_LC16736_Wong et al. (2007), V_4928_LC16736_Wong et al. (2007),

V_4929_LC16736_Wong et al. (2007), V_4930_LC16736_Wong et al. (2007), V_4931_ p13.13-q22.316 72611394 74403212 RP11-30N14 RP11-37L6 17 1.791818 -0.506467777 PSMD7, LOC440348, LOC348174, LOC497190, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1, CTRB2, CTRB1, BCAR1, CFDP1, LOC124491, CHST6, CHST5, FLJ22167, GABARAPL2, ADAT1, KARS, TERF2IP V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007) q22.3-q23.116 79289671 79987237 RP11-399E22 RP11-608O9 14 0.697566 -0.584045834 CDYL2, C16orf61, C16orf60, ASCIZ, C16orf46, GCSH, PKD1L2, BCMO1, GAN q23.2

16 85906951 87538812 RP11-27E6 RP11-370B20 14 1.631861 -0.652978889 FBXO31, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZFPM1, FLJ45530, NHN1, IL17C, CYBA, MVD, SNAI3, RNF166, LOC348180, FAM38A, FLJ45121, FLJ40448, CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3V_4970_LC17076_Wong et al. (2007), V_4971_LC17076_Wong et al. (2007), V_4972_LC17076_Wong et al. (2007), V_4973_LC17076_Wong et al. (2007),

V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong et al. (2007), V_4976_LC17076_Wong et al. (2007) q24.2-q24.316 87995350 88686715 RP11-765H16 RP11-665E3 7 0.691365 -0.502859049 ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A, PCOLN3, C16orf55, CDK10, MGC26885, C16orf7, ZNF276, FANCA, SPIRE2, NULP1, MC1R, TUBB3, FLJ20186, MGC16385, DBNDD1, MGC3101, GAS8, C16orf3, PRDM7 V_0200_LC17076_Iafrate et al. (2004), V_4977_LC17076_Wong et al. (2007), V_4978_LC17076_Wong et al. (2007) q24.3

17 6990306 16800264 RP11-558E15 RP11-655O21 100 9.809958 -0.691982223

TNFSF12-TNFS, TNFSF13, SENP3, EIF4A1, CD68, MPDU1, SOX15, FXR2, SAT2, SHBG, ATP1B2, TP53, WDR79, EFNB3, DNHD3, JMJD3, TMEM88, LSMD1, CYB5D1, CHD3, KCNAB3, TRAPPC1, CNTROB, GUCY2D, ALOX15B, ALOX12B, ALOXE3, HES7, PER1, VAMP2, TMEM107, C17orf59, AURKB, C17orf68, PFAS, SLC25A35, RANGNRF, ARHGEF15, ODF4, KRBA2, RPL26, NDEL1, MYH10, CCDC42, FLJ35773, C17orf38, PIK3R5, NTN1, STX8, WDR16, USP43, GLP2R, RCV1, GAS7, MYH13, MYH8, MYH4, MYH1, MYH2, MYH3, SCO1,

C17orf48, LOC388335, FLJ45455, DNAH9, ZNF18, MAP2K4, MYOCD, KIAA0672, ELAC2, HS3ST3A1, COX10, CDRT15, HS3ST3B1, FLJ45831, PMP22, TEKT3, CDRT4, FAM18B2, CDRT1, TRIM16, ZNF286, MGC51025, ADORA2B, SWS1, TTC19, NCOR1, PIGL, PRR6, UBB, TRPV2, C17orf45, C17orf76, ZNF287, ZNF624, TNFRSF13B V_0798_LC17354_Sharp et al. (2005), V_2218_LC17354_Locke et al. (2006), V_4988_LC17315_Wong et al. (2007), V_4989_LC17333_Wong et al. (2007) p13.1-p11.2

17 17534724 19974707 CTD-2502C3 RP11-134L19 32 2.439983 -0.963363633RAI1, SREBF1, TOM1L2, LRRC48, ATPAF2, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII, SMCR7, TOP3A, SMCR8, SHMT1, LOC654346, LOC220594, FLJ36492, FLJ40244, TRIM70, FBXW10, FAM18B, PRPSAP2, SLC5A10, FAM83G, GRAP, EPN2, EPPB9, MAPK7,

MFAP4, ZNF179, FLJ10847, ALDH3A2, FLJ31196, ALDH3A1, ULK2, AKAP10 V_2219_LC17388_Locke et al. (2006), V_4992_LC17388_Wong et al. (2007), V_4993_LC17390_Wong et al. (2007), V_4994_LC17394_Wong et al. (2007) p11.218 29885021 31146046 RP11-645P11 RP11-164G4 9 1.261025 -0.568941383 NOL4, DTNA, MAPRE2, ZNF397, ZNF271 q12.1-q12.218 31687914 33225616 RP11-239D22 RP11-278M16 13 1.537702 -0.682712781 C18orf21, P15RS, SLC39A6, STATIP1, MOCOS, FHOD3, C18orf10, KIAA1328, BRUNOL4 V_5052_LC18144_Wong et al. (2007) q12.218 35723754 40270938 RP11-593E18 RP11-599F19 40 4.547184 -0.638842285 PIK3C3, RIT2, SYT4 V_0217_LC18181_Iafrate et al. (2004) q12.318 41810969 42125575 RP11-8H2 RP11-565I8 3 0.314606 -0.464015019 PSTPIP2, ATP5A1, CCDC5, C18orf25 q21.1

18 57812198 66078429 RP11-560G16 RP11-692N16 78 8.266231 -0.675871801 PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007) q21.33-q22.218 72594203 72942016 RP11-708M6 RP11-24D3 3 0.347813 -0.448092448 ZNF236, MBP q23

19 75953 8709106 RP11-505K21 RP11-1077G12 79 8.633153 -0.546718315

FLJ45445, PPAP2C, KIAA1193, THEG, SHC2, C19orf19, MADCAM1, C19orf20, CDC34, GZMM, BSG, HCN2, POLRMT, FGF22, RNF126, FSTL3, PRSSL1, PALM, C19orf21, PTBP1, PRG2, AZU1, PRTN3, ELA2, CFD, THRAP5, C19orf22, KISS1R, ARID3A, WDR18, GRIN3B, C19orf6, CNN2, ABCA7, HMHA1, POLR2E, GPX4, KIAA0963, STK11, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, LOC401019, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5, RKHD1, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4, LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R, C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK,

KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2, KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30, FEM1A, TICAM1, M6PRBP1, ARRDC5, C19orf31, UHRF1, JMJD2B, PTPRS, ZNRF4, PLAC2, SAFB2, SAFB, P117, SCDR10, RPL36, PRSS

V_0808_LC18794_Sharp et al. (2005), V_2237_LC18671_Locke et al. (2006), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et al. (2006), V_5065_LC18671_Wong et al. (2007), V_5066_LC18671_Wong et al. (2007), V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007), V_5069_LC18671_Wong et al. (2007), V_5070_LC18730_Wong et al. (2007), V_5071_LC18730_Wong et al. (2007), V_5072_LC18736_Wong et al. (2007), V_5073_LC18746_Wong et al. (2007), V_5074_LC18749_Wong et al. (2007), V_5075_LC18752_Wong et al. (2007), V_5076_LC18770_Wong et al. (2007), V_5077_LC18773_Wong et al. (2007), V_5078_LC18783_Wong et al. (2007), V_5079_LC18794_Wong et al. (2007), V_5080_LC18794_Wong et al. (2007) p13.3-p13.2

19 8751188 23246989 RP13-622L9 RP11-638J2 155 14.495801 -0.627150054

ANGPTL6, PPAN, PPAN-P2RY11, P2RY11, EIF3S4, DNMT1, EDG5, MRPL4, ICAM1, ICAM4, ICAM5, MGC19604, RAVER1, ICAM3, TYK2, CDC37, PDE4A, KEAP1, EDG8, ATG4D, FLJ12949, CDKN2D, AP1M2, SLC44A2, ILF3, QTRT1, DNM2, TMED1, CARM1, YIPF2, LOC90580, SMARCA4, LDLR, SPBC24, ANKRD25, DOCK6, LOC55908, TSPAN16, RAB3D, UNQ501, LOC126075, LPPR2, FLJ35119, EPOR, RGL3, MGC20983, PRKCSH, ELAVL3, ZNF653, SITPEC, CNN1, ELOF1, ACP5, ZNF627, LOC401898, HSZFP36, ZNF441, ZNF491,

ZNF439, ZNF69, ZNF700, ZNF440L, ZNF433, LOC729747, ZNF20, ZNF625, ZNF136, ZNF44, ZNF563, ZNF442, ZNF443, ZNF709, ZNF564, ZNF490, FLJ90396, MAN2B1, C19orf56, MORG1, DHPS, FBXW9, TNPO2, MGC2803, ASNA1, BEST2, HOOK2, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, DNASE2, KLF1, GCDH, FARSA, CALR, RAD23A, GADD45GIP1, DAND5, NFIX, LYL1, TRMT1, BTBD14B, STX10, IER2, CACNA1A, MGC10471, MGC3207, HSPC023, ZSWIM4, MGC11271, CC2D1A, FLJ23447, LOC90379, RFX1, RLN3, IL27RA,

SAMD1, PRKACA, ASF1B, LPHN1, CD97, DDX39, PKN1, PTGER1, GIPC1, DNAJB1, GPSN2, NDUFB7, FLJ45910, EMR3, ZNF333, EMR2

V_0220_LC18794_Iafrate et al. (2004), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007), V_5087_LC18821_Wong et al. (2007), V_5088_LC18841_Wong et al. (2007), V_5089_LC18844_Wong et al. (2007), V_5090_LC18847_Wong et al. (2007), V_5091_LC18881_Wong et al. (2007), V_5092_LC18883_Wong et al. (2007),

V_5093_LC18883_Wong et al. (2007), V_5094_LC18905_Wong et al. (2007) p13.2-p12

22 26560572 31122764 RP11-736H16 RP11-564B15 41 4.562192 -0.560722889

PITPNB, CHEK2, HSC20, FLJ33814, XBP1, HS747E2A, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RRP22, AP1B1, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UCRC, ASCC2, MTMR3, LOC400924, HORMAD2, LIF, OSM, LOC652968, TBC1D10A, SF3A1, LOC550631, LOC200312, SEC14L2, MTP18, SEC14L3, SEC14L4, GAL3ST1, PES1, TCN2, SLC35E4, DUSP18, OSBP2, MORC2, SMTN, SELM, PIB5PA, PLA2G3, RNF185, LIMK2, MGC17330, ZNF278, DRG1, EIF4ENIF1, SFI1, PISD, MGC50372, DEPDC5, YWHAH,

LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28 V_0236_LC20439_Iafrate et al. (2004) q12.1-q12.3

22 33558675 35751426 RP11-434B18 RP11-196I6 21 2.192751 -0.584329463 RAXLX, HMG2L1, TOM1, HMOX1, MCM5, RASD2, MB, LOC284912, APOL6, APOL5, RBM9, APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB, NCF4, CSF2RB, MGC35206, TST, MPST V_0237_LC20476_Iafrate et al. (2004), V_5181_LC20466_Wong et al. (2007), V_5182_LC20466_Wong et al. (2007), V_5183_LC20479_Wong et al. (2007) q12.3

22 36139400 39259661 RP11-136J17 RP11-535G18 31 3.120261 -0.590891179DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7, PDGFB, RPL3, SYNGR1, MAP3K7IP1, MGAT3, FLJ20232, ATF4, RPS19BP1, CACNA1I, FLJ25421,

GRAP2, FAM83F, TNRC6B, ADSL, RUTBC3, MKL1V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5184_LC20492_Wong et al. (2007), V_5185_LC20500_Wong et al. (2007),

V_5186_LC20500_Wong et al. (2007), V_5187_LC20514_Wong et al. (2007) q13.123 23638595 24131983 CTD-2594J24 RP11-479I1 6 0.493388 -0.457676484 ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX p22.1123 40210134 41661545 RP11-6E1 RP11-160H17 14 1.451411 -0.679863547 ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82 p11.423 44058402 44819157 RP11-750B11 RP13-604A7 6 0.760755 -0.608586492 EFHC2, FUNDC1, DUSP21, UTX p11.323 45316875 47473809 RP11-605C7 RP11-466C12 19 2.156934 -0.629418038 ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41, ARAF, SYN1, TIMP1, CFP, ELK1, UXT p11.3-p11.23

23 53197714 67807729 RP11-473J14 RP11-567A13 117 14.610015 -0.96788756SMCX, IQSEC2, SMC1L1, RIBC1, HADH2, HUWE1, PHF8, CXorf17, WNK3, RP1-112K5.2, FGD1, GNL3L, ITIH5L, MAGED2, TRO, PFKFB1, APEX2, ALAS2, PAGE2B, PAGE2, FAM104B, PAGE5, PAGE3, MAGEH1, USP51, FOXR2, RRAGB, KLF8, UBQLN2, SPIN3, SPIN-2,

SPIN2, FLJ31204, ZXDB, ZXDA, LOC139886, ARHGEF9, FAM123B, ASB12, MTMR8, KIAA1166, ZC3H12B, LAS1L, MSN, VSIG4, HEPH, EDA2R, AR, OPHN1, YIPF6, STARD8 V_0243_LC20866_Iafrate et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) p11.22-q13.1

23 68425429 77855615 RP11-761G17 RP11-732I12 75 9.430186 -0.615629912

TMEM28, EDA, DGAT2L4, OTUD6A, IGBP1, DGAT2L6, DGAT2L3, P2RY4, ARR3, RAB41, PDZD11, KIF4A, GDPD2, DLG3, TEX11, SLC7A3, SNX12, MLLT7, LOC158830, IL2RG, MED12, NLGN3, GJB1, ZMYM3, NONO, ITGB1BP2, TAF1, OGT, ACRC, CXCR3, RGAG4, LOC340527, FLJ44635, PIN4, LOC728758, FLJ20105, RPS4X, CITED1, HDAC8, PHKA1, LOC728656, DMRTC1, LOC645974, LOC340529, NAP1L2, CDX4, CHIC1, ZCCHC13, SLC16A2, RNF12, KIAA2022, ABCB7, UPRT, ZDHHC15, MAGEE2, CXorf26, MAGEE1, FGF16,

ATRX, DKFZp564K142, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, ZCCHC5 V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004) q13.1-q21.123 79028726 81027626 RP11-677N10 RP11-659H10 17 1.9989 -0.643747528 TBX22, FAM46D, BRWD3, NSBP1, SH3BGRL V_0246_LC20931_Iafrate et al. (2004) q21.123 84988441 87298882 RP11-345B4 CTD-2200P13 25 2.310441 -0.717330003 CHM, DACH2, KLHL4 q21.2-q21.3123 88739126 92007177 RP11-751O24 RP11-600L19 32 3.268051 -0.815490977 TGIF2LX, PABPC5, PCDH11X q21.31-q21.3223 114560696 115239863 RP11-644E23 RP11-147L22 4 0.679167 -0.359940382 PLS3, AGTR2 q2323 116135836 117979651 RP13-420K18 RP11-99A13 16 1.843815 -0.534066842 KLHL13, WDR44, DOCK11, IL13RA1, ZCCHC12 q23-q2423 118407845 121650228 RP11-499H6 RP11-604P10 33 3.242383 -0.777151251 CT47.6, GLUD2 q24-q2523 122535814 123093111 RP11-524K17 RP11-100L19 4 0.557297 -0.332219104 THOC2, BIRC4, STAG2 q2523 124324798 125561267 RP11-438A5 RP11-580I15 14 1.236469 -0.555909421 LOC340578, WDR40B V_0253_LC21091_Iafrate et al. (2004) q2523 129077668 129562114 RP11-172L5 RP11-657G1 6 0.484446 -0.503883426 PDCD8, RAB33A, SUHW3, SLC25A14, GPR119, RBMX2 q2523 130269969 130691885 RP11-63F10 RP11-155A5 3 0.421916 -0.504774755 OR13H1 q26.1-q26.223 140623760 140664538 RP11-216N17 RP11-617N20 3 0.040778 -0.467151826 V_0827_LC21138_Sharp et al. (2005) q27.223 142833406 143156637 RP11-319M16 RP11-1A6 3 0.323231 -0.24393658 q27.323 151031246 151561153 RP11-335K8 CTD-2305K5 6 0.529907 -0.495945686 MAGEA5, MAGEA10, GABRA3, GABRQ q2823 152675400 153089663 RP11-314B3 CTD-2149G5 9 0.414263 -0.596652549 PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW q2823 154676627 154906914 RP11-441J8 RP11-1245L19 3 0.230287 -0.3582029 V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q2824 482246 7663473 CTD-2584M8 RP11-105L10 61 7.181227 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y, PRKY V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.224 12385494 15496135 RP11-417O1 RP11-602N18 40 3.110641 -0.833450021 USP9Y, DDX3Y, UTY, TMSB4Y, VCY, VCY1B, NLGN4Y V_0830_LC21244_Sharp et al. (2005) q11.1-q11.22124 15661023 16577456 RP11-615H20 RP11-168P23 12 0.916433 -0.385305414 q11.22124 22482558 22886078 RP11-780C1 RP11-724A10 4 0.40352 -0.459018546 PRY, PRY2, RBMY1F V_0833_LC21265_Sharp et al. (2005) q11.22324 24137225 24469906 RP11-220L19 RP11-823D8 5 0.332681 -0.3664264 V_2288_LC21265_Locke et al. (2006) q11.22324 26217597 26760184 CTD-2330G13 RP11-79H21 3 0.542587 -0.482494897 q11.2324 26946252 57705178 CTD-2027O14 CTD-2341N11 6 30.758926 -0.523115703 SPRY3, SYBL1 V_4843_LC21267_Wong et al. (2007) q11.23-q12

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands2 784603 9407162 RP11-132I6 RP11-119K2 69 8.622559 0.703010708 SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC, SOX11, FLJ41046, LOC129607, RSAD2, RNF144, ID2, KIDINS220, OACT2, DDEF2 V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007) p25.3-p25.12 11750125 23893204 RP11-5H4 RP11-557N21 109 12.143079 0.776163575 LPIN1, TRIB2, FAM84A, NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3, GDF7, C2orf43, APOB V_0689_LC1609_Sharp et al. (2005), V_4275_LC1625_Wong et al. (2007) p25.1-p24.12 27507766 31455726 RP11-385I17 RP11-450L18 42 3.94796 1.015463562 NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE, FOSL2, PLB1, PPP1CB, SPDY1, FLJ20628, LOC165186, FLJ34931, RSNL2, ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH p23.3-p23.1

2 34082572 38486828 RP11-600A15 RP11-585L18 45 4.404256 0.772754338 CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC34824, ARL6IP2V_0018_LC1749_Iafrate et al. (2004), V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007),

V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et al. (2007), V_4282_LC1766_Wong et al. (2007) p22.3-p22.1

2 38974177 86371403 RP11-173C1 RP11-301O19 459 47.397226 0.858886942

ATP6V1E2, RHOQ, PIGF, CRIPT, SOCS5, MCFD2, TTC7A, FLJ40172, CALM2, TACSTD1, MSH2, KCNK12, MSH6, FBXO11, FOXN2, LOC129285, FLJ46838, SALF, STON1, ALF, LHCGR, FSHR, NRXN1, ASB3, CHAC2, C2orf30, GPR75, PSME4, ACYP2, TSPYL6, FLJ40298, SPTBN1, RTN4, FLJ31438, RPS27A, MTIF2, LOC344405, KIAA1212, CCDC104, SMEK2, PNPT1, EFEMP1, CCDC85A, VRK2, FANCL, BCL11A, PAPOLG, REL, FLJ32312, PEX13, KIAA1841, AHSA2, USP34, XPO1, FLJ13305, CCT4, COMMD1, B3GNT2, TMEM17, EHBP1,

OTX1, LOC51057, MDH1, UGP2, VPS54, PELI1, HSPC159, AFTIPHILIN, SERTAD2, SLC1A4, CEP68, RAB1A, ACTR2, SPRED2, FLJ16124, MEIS1, ETAA16, C1D, LOC116143, LOC56902, PPP3R1, C2orf32, PLEK, LOC554251, C2orf13, PROKR1, ARHGAP25, BMP10, GDDR, GKN1, ANTXR1, GFPT1, HIRIP5, DKFZp686K161, AAK1, ANXA4, GMCL1, RY1, MXD1, FLJ25084, PCBP1, FLJ20558, TIA1, PCYOX1, SNRPG, FLJ14668, TGFA, ADD2, FIGLA, CLEC4F, CD207, VAX2, ATP6V1B1, FLJ12056, TEX261, NAGK, MCEE, MPHOSPH10,

ZNF638, DYSF, CYP26B1, SPR, EMX1, SFXN5, RAB11FIP5, SMYD5, C2orf7, CCT7, FBXO41, EGR4, ALMS1, NAT8, LOC200420, NAT8B


V_4289_LC1968_Wong et al. (2007), V_4290_LC1992_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007) p22.1-p11.22 86914908 88056043 RP11-1383P22 RP11-86I2 21 1.141135 0.648815246 CD8B, LOC285074, MGC4677, PLGLB2, PLGLB1, RGPD2 V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et al. (2007), V_4293_LC2035_Wong et al. (2007), V_4294_LC2035_Wong et al. (2007) p11.22 95451694 95915431 RP11-440D17 CTD-2215J23 5 0.463737 1.248926876 TRIM43 V_4299_LC2057_Wong et al. (2007) q11.1-q11.22 97026359 97667904 RP11-641B23 RP11-462C12 7 0.641545 1.225374296 DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B q11.2

2 104631203 128777875 RP11-801B7 RP11-631J9 220 24.146672 1.166246655

ANAPC1, MERTK, TMEM87B, FLJ37440, ZC3H8, ZC3H6, TTL, POLR1B, CHCHD5, SLC20A1, FLJ40629, IL1A, IL1B, IL1F7, IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8, CBWD2, FOXD4L1, RABL2A, SLC35F5, ACTR3, DPP10, DDX18, FLJ10996, INSIG2, EN1, MARCO, C1QL2, STEAP3, LOC130355, DBI, TMEM37, SCTR, MGC33657, MGC10993, PTPN4, EPB41L5, RALB, INHBB, GLI2, TFCP2L1, CLASP1, MKI67IP, TSN, CNTNAP5, GYPC, BIN1, FLJ16008, ERCC3, MAP3K2, PROC, IWS1, MYO7B, LIMS2, GPR17, SFT2D3,

WDR33, POLR2D, MGC4268, SAP130, UGCGL1, HS6ST1

V_0021_LC2111_Iafrate et al. (2004), V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp et al. (2005), V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke et al. (2006), V_4303_LC2134_Wong et al. (2007), V_4304_LC2184_Wong et al. (2007),

V_4305_LC2229_Wong et al. (2007) q12.1-q14.32 129399475 130166059 RP11-159J24 RP11-346O9 9 0.766584 0.799331061 V_0693_LC2234_Sharp et al. (2005), V_4306_LC2234_Wong et al. (2007) q14.3-q21.12 132821463 135408415 RP11-412C19 RP11-726P3 23 2.586952 0.92546804 GPR39, LYPD1, NAP5, MGAT5, TMEM163, ACMSD, CCNT2 V_4308_LC2246_Wong et al. (2007) q21.2-q21.3

2 135990566 170013050 RP11-470O21 RP11-807C18 319 34.022484 0.873533833

ZRANB3, R3HDM1, UBXD2, LCT, MCM6, DARS, CXCR4, THSD7B, HNMT, LOC339745, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZFHX1B, ACVR2A, ORC4L, MBD5, EPC2, KIF5C, LOC130576, MGC52057, C2orf25, RND3, FLJ45645, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, ARL6IP6, RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, KIAA1189, PSCDBP, ACVR1C, ACVR1, UPP2, LOC130940, PKP4, LOC92196, TANC1, WDSUB1, BAZ2B, CD302, LY75, PLA2R1, ITGB6, RBMS1, TANK, PSMD14, TBR1, SLC4A10,

DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN, GRB14, COBLL1, FLJ39822, SCN3A, SCN2A2, TAIP-2, GALNT3, TTC21B, SCN1A, SCN9A, SCN7A, CMYA3, B3GALT1, STK39, LASS6, NOSTRIN, SPBC25, G6PC2, ABCB11, DHRS9, LRP2


V_4317_LC2405_Wong et al. (2007), V_4318_LC2416_Wong et al. (2007) q21.3-q31.12 170475652 171722905 RP11-389F18 CTD-2028M5 12 1.247253 0.639045667 ZNF650, MYO3B, LOC440925, SP5, GAD1, GORASP2, TLK1 V_0027_LC2428_Iafrate et al. (2004) q31.12 173443438 174859368 RP11-605G5 RP11-135M14 13 1.41593 0.65504757 RAPGEF4, ZAK, CDCA7, SP3, PTD004 V_0028_LC2438_Iafrate et al. (2004) q31.12 175101640 176145335 CTD-2026H6 RP11-205B19 8 1.043695 0.658490696 WIPF1, CHRNA1, CHN1, ATF2, ATP5G3 q31.1

2 176878524 197403941 CTD-2135J8 RP11-555H24 179 20.525417 0.867141117

MTX2, HNRPA3, NFE2L2, AGPS, TTC30B, TTC30A, PDE11A, DRB1, OSBPL6, PRKRA, DFNB59, FKBP7, PLEKHA3, TTN, FLJ39502, SESTD1, ZNF533, KIAA1604, UBE2E3, ITGA4, CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, C2orf10, FSIP2, FLJ44048, ZC3H15, ITGAV, KIAA1946, ZSWIM2, CALCRL, TFPI, GULP1, DIRC1, COL3A1, COL5A2, WDR75, SLC40A1, ASNSD1, FLJ25415, OSGEPL1, ORMDL1, PMS1, GDF8, MGC13057, HIBCH, INPP1, FLJ20160, NAB1, GLS, STAT1, STAT4,

MYO1B, OBFC2A, SDPR, TMEFF2, SLC39A10, DNAH7, STK17B, HECW2, FLJ39660, GTF3C3, UNQ6411V_0029_LC2519_Iafrate et al. (2004), V_4319_LC2466_Wong et al. (2007), V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007),

V_4322_LC2517_Wong et al. (2007), V_4323_LC2558_Wong et al. (2007) q31.1-q33.13 109020312 109324744 RP11-630L5 RP11-121A9 3 0.304432 0.835793047 CD47 V_4349_LC3494_Wong et al. (2007) q13.123 111157617 113002378 RP11-764C7 RP11-187D14 24 1.844761 0.56678345 PVRL3, CD96, ZBED2, PLCXD2 V_4350_LC3509_Wong et al. (2007) q13.13-q13.23 124458089 126114775 RP11-570H22 RP11-507A11 12 1.656686 0.62353611 SEC22A, ADCY5, PTPLB, MYLK, CCDC14, ROPN1, KALRN, UMPS, ITGB5, MUC13 q21.1-q21.23 127507534 129698615 RP11-287L3 RP11-383K18 24 2.191081 1.148557404 KLF15, CCDC37, ZXDC, UROC1, CHST13, C3orf22, TR2IT1, CHCHD6, PLXNA1, C3orf56, GPR175, MCM2, PODXL2, ABTB1, MGLL, KLHDC6, SEC61A1, RUVBL1, EEFSEC, DNAJB8, GATA2 q21.2-q21.33 130611156 131149842 RP11-529F4 CTD-2204E19 4 0.538686 0.658984063 C3orf25, MBD4, IFT122, RHO, H1FOO, PLXND1, TMCC1 q21.33 131461246 137086328 RP11-129J11 RP11-709D19 43 5.625082 0.77981983 FLJ35880, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBE1DC1, NPHP3, TMEM108, BFSP2, CDV3, TOPBP1, TF, SRPRB, RAB6B, C3orf36, SLCO2A1, RYK, AMOTL2, ANAPC13, CEP63, KY, EPHB1 V_4353_LC3617_Wong et al. (2007), V_4354_LC3619_Wong et al. (2007) q21.3-q22.23 139019403 140006062 RP11-598P12 RP11-474K21 11 0.986659 0.667002442 CLDN18, DZIP1L, A4GNT, DBR1, ARMC8, TXNDC6, MRAS, FAM62C, CEP70, FAIM, PIK3CB q22.33 140174193 142716241 RP11-34M23 CTD-2017H1 37 2.542048 0.746995918 LOC389151, FLJ46210, MRPS22, COPB2, RBP2, RBP1, NMNAT3, CLSTN2, TRIM42, SLC25A36, SPSB4, ACPL2, ZBTB38, RASA2 V_0036_LC3666_Iafrate et al. (2004) q22.3-q233 143459847 145934552 RP11-43H24 RP11-206O2 25 2.474705 0.703347356 XRN1, ATR, PLS1, TRPC1, PCOLCE2, PAQR9, SR140, CHST2, SLC9A9, C3orf58 q23-q24

3 146096431 163542226 RP11-640A23 RP11-717D15 184 17.445795 1.098765394

PLOD2, PLSCR4, PLSCR2, PLSCR1, ZIC4, ZIC1, AGTR1, CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2, TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ,

SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L, B3GALT3, NMD3, C3orf57, LOC131149V_0037_LC3745_Iafrate et al. (2004), V_4355_LC3723_Wong et al. (2007), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007),

V_4358_LC3775_Wong et al. (2007) q24-q26.13 163841628 164550771 RP11-450I4 RP11-337P5 6 0.709143 0.558637493 V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et al. (2007), V_4361_LC3802_Wong et al. (2007) q26.13 165423833 171235144 RP11-170L21 RP11-400J12 48 5.811311 0.864134579 SI, SLITRK3, BCHE, FLJ23049, SERPINI2, WDR49, PDCD10, SERPINI1, GOLPH4, EVI1, MDS1, ARPM1, MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1 V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_4362_LC3840_Wong et al. (2007) q26.1-q26.23 171649589 176091541 RP11-158I18 RP11-152D17 32 4.441952 0.870994976 SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B, GHSR, TNFSF10, AADACL1, ECT2, SPATA16, NLGN1, NAALADL2 q26.2-q26.316 43456287 44165113 RP11-761E8 RP11-135A3 7 0.708826 1.067666046 ABCC10, EGFL9, TJAP1, C6orf154, YIPF3, POLR1C, XPO5, POLH, GTPBP2, MAD2L1BP, C6orf206, MRPS18A, VEGF, MGC45491 p21.17 115931945 116760882 RP11-730H9 CTD-2125N8 7 0.828937 0.62138688 CAV2, CAV1, MET, CAPZA2, ST7, WNT2 q31.28 48324637 48787293 RP11-1130I3 RP11-626C19 6 0.462656 0.675423694 KIAA0146 q11.218 59896089 61434454 RP11-273A24 RP11-359G13 16 1.538365 0.763788927 TOX, CA8 V_4595_LC10619_Wong et al. (2007) q12.18 62486394 64058603 RP11-110E6 CTD-2120K11 11 1.572209 0.687077074 MGC34646, ASPH, FAM77D, FLJ39198 q12.38 64246885 65326133 RP11-814M18 RP11-65M9 8 1.079248 0.567615995 YTHDF3 V_4596_LC10633_Wong et al. (2007), V_4597_LC10634_Wong et al. (2007) q12.39 1743998 2408291 RP11-420P23 CTD-2007C22 6 0.664293 0.50745965 SMARCA2 p24.3-p24.29 113335210 114163069 RP11-450J6 RP11-636D15 8 0.827859 0.69755364 ZNF483, LTB4DH, bA16L21.2.1, LOC552891, GNG10, C9orf84, UGCG, SUSD1, ROD1 q31.3-q329 123482471 124028820 RP11-59O19 RP11-2P1 4 0.546349 0.818482129 DAB2IP, TTLL11, NDUFA8, C9orf18, LHX6 q33.2

15 61312696 61736764 RP11-456N13 RP11-45J10 3 0.424068 0.502336373 RAB8B, APH1B, CA12, USP3, FBXL22, HERC1 q22.2-q22.3117 27641497 28714625 RP11-299H3 RP11-173B17 12 1.073128 0.841603277 RHBDL3, C17orf75, ZNF207, PSMD11, CDK5R1, MYO1D, TMEM98, SPACA3, ACCN1 q11.217 33326852 33697018 RP11-600K4 RP11-72I20 3 0.370166 0.839209907 TBC1D3B, TBC1D3 V_5002_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al. (2007) q1217 34311476 34730322 RP11-600J16 RP11-25P3 3 0.418846 0.765327687 LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, FBXL20 V_5006_LC17473_Wong et al. (2007) q12

17 35833079 36917852 RP11-51J19 RP11-639G19 8 1.084773 0.940358795IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5,

KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A, KRTHA3B, KRTHA4, KRTHA1, KRTHA7, KRTHA8, KRT32, KRTHA5, KRTHA6, KRT13 V_0205_LC17492_Iafrate et al. (2004) q21.2

17 41834276 42244748 RP11-57A24 RP11-84A7 3 0.410472 1.01291071 LOC474170, ARL17, NSF, WNT3 V_0207_LC17522_Iafrate et al. (2004), V_0803_LC17522_Sharp et al. (2005), V_2228_LC17522_Locke et al. (2006), V_5014_LC17522_Wong et al. (2007) q21.31-q21.3219 34159859 34830341 RP11-715C22 RP11-35J2 5 0.670482 2.025472934 UQCRFS1, POP4 q1219 34968898 37511959 CTD-2057D4 RP11-651A23 30 2.543061 1.743175889 CCNE1, C19orf2, ZNF536, TSHZ3 q12-q13.1119 42635633 43200228 RP11-233L17 RP11-698K1 5 0.564595 1.007409396 ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3 V_5099_LC18991_Wong et al. (2007) q13.12-q13.13

19 47912047 48626174 RP11-535I17 RP11-160A19 4 0.714127 0.640907468 PSG3, PSG8, PSG1, PSG6, PSG7, PSG11, PSG2, PSG5, PSG4, PSG9, CD177, TEX101 V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. (2006), V_5101_LC19026_Wong et al. (2007), V_5102_LC19026_Wong et al. (2007) q13.31

19 49078420 50320128 RP11-780K18 RP11-520B22 11 1.241708 0.619445015ZNF45, ZNF221, ZNF155, ZNF230, ZNF222, ZNF223, ZNF284, ZNF224, ZNF225, ZNF234, ZNF226, ZNF227, ZNF233, ZNF235, ZNF228, ZNF285A, ZNF229, ZNF180, PVR, CEACAM19, CEACAM16, BCL3, CBLC, BCAM, PVRL2, TOMM40, APOE, APOC1, APOC4, APOC2,

CLPTM1, RELB, SFRS16, ZNF342, GEMIN7 V_0221_LC19039_Iafrate et al. (2004), V_2245_LC19036_Locke et al. (2006), V_5103_LC19048_Wong et al. (2007) q13.31-q13.3220 51819457 52366346 RP11-394P23 RP11-114N21 5 0.546889 1.775561826 BCAS1, CYP24A1, PFDN4 V_5143_LC19835_Wong et al. (2007) q13.221 42613790 43169785 RP11-705I20 RP11-53A21 4 0.555995 0.670913557 TFF2, TFF1, TMPRSS3, UBASH3A, TSGA2, SLC37A1, PDE9A, WDR4 q22.322 46776797 47327586 RP11-328I12 RP11-690L4 4 0.550789 0.703528438 LOC388915 V_5191_LC20603_Wong et al. (2007) q13.31-q13.32

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands3 150390484 150648699 RP11-206M11 CTD-2192F6 3 0.258215 1.001706929 CP, TM4SF18, TM4SF1 q24-q25.13 174785038 176091541 RP11-99M11 RP11-152D17 8 1.306503 0.870994976 NLGN1, NAALADL2 q26.316 43851257 44165113 RP11-21M9 RP11-135A3 3 0.313856 1.067666046 VEGF, MGC45491 p21.1



OVISE

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 307737 932280 RP11-776O18 CTD-2200D4 8 0.624543 0.344560681 SAMD11, NOC2L, KLHL17, PLEKHN1, HES4 V_4189_LC0001_Wong et al. (2007), V_4190_LC0001_Wong et al. (2007), V_4191_LC0001_Wong et al. (2007) p36.33

1 6557883 12588321 RP11-36K18 RP11-610K11 58 6.030438 0.432680588

TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA,

NPPB, KIAA2013, PLOD1, MFN2, IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3V_0003_LC0126_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007),

V_4203_LC0113_Wong et al. (2007), V_4204_LC0118_Wong et al. (2007), V_4205_LC0141_Wong et al. (2007) p36.31-p36.221 36794780 39415062 CTD-2013G23 RP11-345N12 27 2.620282 0.417223678 GRIK3, ZC3H12A, C1orf149, SNIP1, DNALI1, GNL2, RSPO1, C1orf109, CDCA8, EPHA10, MANEAL, YRDC, C1orf122, MTF1, INPP5B, SF3A3, FHL3, UTP11L, POU3F1, RRAGC, MYCBP, GJA10, RHBDL2, C1orf108, NDUFS5 V_0006_LC0305_Iafrate et al. (2004) p34.3

1 39643978 43455011 RP11-69E11 RP11-35J13 34 3.811033 0.626474332MACF1, BMP8A, PABPC4, HEYL, NT5C1A, HPCAL4, PPIE, BMP8B, OXCT2, TRIT1, MYCL1, MFSD2, CAP1, PPT1, RLF, TMCO2, ZMPSTE24, COL9A2, SMAP1L, ZNF643, ZNF642, C1orf176, ZNF684, RIMS3, NFYC, KCNQ4, CITED4, CTPS, FLJ23878,

SCMH1, EDN2, HIVEP3, GUCA2B, GUCA2A, FOXJ3, FAM80A, ZMYND12, PPCS, LOC728621, PPIH, YBX1, CLDN19, LEPRE1, C1orf50, CCDC23, ERMAP, ZNF691, SLC2A1, EBNA1BP2, WDR65 V_4219_LC0315_Wong et al. (2007) p34.21 66098944 67029193 RP11-442C16 RP11-97G8 9 0.930249 0.939315915 PDE4B, SGIP1, TCTEX1D1 p31.31 71435913 73905594 RP11-437B7 RP11-660G22 25 2.469681 0.51382831 NEGR1 V_4229_LC0493_Wong et al. (2007) p31.11 88953414 89736979 RP11-44G21 CTD-2169I12 7 0.783565 0.442074061 PKN2, GTF2B, KAT3, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP5, GBP6 p22.21 91077343 94058962 RP11-742K10 RP11-488P3 21 2.981619 0.665489979 ZNF644, HFM1, CDC7, TGFBR3, BRDT, ABHD7, BTBD8, C1orf146, GLMN, C1orf82, GFI1, EVI5, RPL5, FAM69A, MTF2, TMED5, CCDC18, DR1, FNBP1L, BCAR3 V_4234_LC0594_Wong et al. (2007) p22.2-p22.11 94780701 95956593 RP11-767C7 RP11-105D8 10 1.175892 0.583719679 SLC44A3, CNN3, ALG14, TMEM56, RWDD3 V_0011_LC0611_Iafrate et al. (2004), V_4235_LC0611_Wong et al. (2007) p21.31 104129331 105736772 RP11-712C22 RP11-726C20 19 1.607441 0.598031791 p21.1

1 108351490 111509723 RP11-680B17 RP11-598G14 29 3.158233 0.951947678SLC25A24, FAM102B, C1orf59, PRPF38B, FNDC7, STXBP3, C1orf62, GPSM2, CLCC1, WDR47, TAF13, C1orf119, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5, SYPL2, ATXN7L2, CYB561D1, AMIGO1, GPR61, GNAI3, GNAT2, AMPD2,

GSTM4, GSTM2, GSTM1, GSTM5, GSTM3, EPS8L3, CSF1, AHCYL1, FAM40A, ALX3, UBL4B, SLC6A17, KCNC4, RBM15, SLC16A4, HBXIP, PROK1, KCNA10, KCNA2, KCNA3, CD53, C1orf103, TMEM77, CEPT1 V_2049_LC0673_Locke et al. (2006), V_4241_LC0680_Wong et al. (2007) p13.31 113020624 113533102 RP11-35H13 RP11-596I10 4 0.512478 0.443973069 MOV10, RHOC, PPM1J, FAM19A3, SLC16A1, LRIG2 V_0013_LC0711_Iafrate et al. (2004) p13.21 142666409 143653121 RP11-82K10 RP11-138C21 8 0.986712 0.900033569 NBPF20 V_0684_LC0752_Sharp et al. (2005), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007) q21.11 147066269 147979384 RP11-761K20 CTD-2288N2 8 0.913115 0.79600022 LOC388692, LOC440686, PPIAL4 V_2052_LC0752_Locke et al. (2006), V_4254_LC0752_Wong et al. (2007), V_4255_LC0752_Wong et al. (2007), V_4256_LC0752_Wong et al. (2007) q21.11 166397548 169187589 RP11-473N16 RP11-165A8 38 2.790041 0.490586447 TIPRL, SFT2D2, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BLZF1, C1orf114, SLC19A2, F5, SELP, SELL, SELE, C1orf156, C1orf112, SCYL3, KIFAP3, SCYL1BP1, PRRX1, C1orf129 V_4261_LC0907_Wong et al. (2007) q24.2-q24.31 170069073 171200579 RP11-398I12 RP11-760K13 8 1.131506 0.581485662 DNM3, C1orf105, PIGC, C1orf9, FASLG q24.3-q25.11 174977032 176971757 RP11-655F10 RP11-10F12 22 1.994725 0.541775746 PAPPA2, ASTN, FAM5B, LZTR2, RASAL2, C1orf49, FLJ35530, RALGPS2 q25.2

1 179828670 198068898 CTD-2011P7 RP11-346I6 148 18.240228 0.896252695

CACNA1E, ZNF648, GLUL, TEDDM1, RNASEL, RGS16, RGS8, NPL, DHX9, C1orf14, LAMC1, LAMC2, NMNAT2, SMG7, NCF2, ARPC5, RGL1, APOBEC4, GLT25D2, C1orf19, C1orf21, C1orf22, C1orf24, RNF2, C1orf25, C1orf26, IVNS1ABP, HMCN1, PRG4, TPR, C1orf27, OCLM, PDC, PTGS2, PLA2G4A, C1orf99, FAM5C, RGS18, RGS21, RGS1, RGS13, RGS2, UCHL5, TROVE2, GLRX2, CDC73, B3GALT2, KCNT2, CFH, CFHR3, CFHR1, CFHR4, CFHR2, CFHR5, F13B, ASPM, ZBTB41, CRB1, FLJ20054,

DENND1B, C1orf53, LHX9, NEK7, ATP6V1G3, PTPRCV_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006),

V_2055_LC1055_Locke et al. (2006), V_4265_LC0992_Wong et al. (2007), V_4266_LC1019_Wong et al. (2007) q25.3-q32.11 212545819 217892621 RP11-379J9 RP11-638I1 55 5.346802 1.205280543 SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, LOC128153, RRP15, TGFB2, LYPLAL1 V_4270_LC1176_Wong et al. (2007) q411 221361390 222474340 RP11-18A13 RP11-619N8 7 1.11295 0.854207634 TLR5, SUSD4, C1orf65, CAPN2, TP53BP2, FBXO28, DEGS1 q41-q42.111 235512879 237682178 RP11-730K6 RP11-158M3 21 2.169299 1.220682528 RYR2, ZP4 q432 41662 9266460 CTD-2379H9 RP11-517E8 76 9.224798 0.703010708 SH3YL1, ACP1, LOC285016, TMEM18, SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC, SOX11, FLJ41046, LOC129607, RSAD2, RNF144, ID2, KIDINS220, OACT2, DDEF2 V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007) p25.3-p25.12 12558288 20070101 RP11-228G11 RP11-192O14 69 7.511813 0.681686873 TRIB2, FAM84A, NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3 V_0689_LC1609_Sharp et al. (2005), V_4275_LC1625_Wong et al. (2007) p25.1-p24.12 21099748 23027471 RP11-1283D6 RP11-608P22 19 1.927723 0.672173748 APOB p24.12 29397001 33679934 RP11-423G3 RP11-382F15 41 4.282933 0.835104012 ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH, SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A p23.2-p22.32 36623924 38486828 RP11-484P1 RP11-585L18 16 1.862904 0.744195004 CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC34824, ARL6IP2 V_4282_LC1766_Wong et al. (2007) p22.2-p22.12 38974177 39710002 RP11-173C1 RP11-109N19 9 0.735825 0.644024406 SOS1, CDKL4, MAP4K3 p22.12 41706139 42036971 RP11-173M7 RP11-44F22 3 0.330832 0.649435908 p212 44269896 46848642 RP11-755G2 RP11-536C12 24 2.578746 0.677049965 PPM1B, SLC3A1, PREPL, C2orf34, SIX3, SIX2, FLJ10379, PRKCE, EPAS1, ATP6V1E2, RHOQ, PIGF, CRIPT, SOCS5 V_4283_LC1814_Wong et al. (2007) p212 47952903 49942242 RP11-101E12 CTD-2306H11 19 1.989339 0.662978341 FBXO11, FOXN2, LOC129285, FLJ46838, SALF, STON1, ALF, LHCGR, FSHR V_4284_LC1832_Wong et al. (2007) p16.32 51472293 57767402 RP11-759A12 RP11-426N8 60 6.295109 0.704598934 ASB3, CHAC2, C2orf30, GPR75, PSME4, ACYP2, TSPYL6, FLJ40298, SPTBN1, RTN4, FLJ31438, RPS27A, MTIF2, LOC344405, KIAA1212, CCDC104, SMEK2, PNPT1, EFEMP1, CCDC85A V_4285_LC1867_Wong et al. (2007) p16.3-p16.12 58330276 61530379 RP11-644F9 RP11-803E10 35 3.200103 0.708101925 BCL11A, PAPOLG, REL, FLJ32312, PEX13, KIAA1841, AHSA2, USP34 V_0019_LC1897_Iafrate et al. (2004) p16.1-p152 62950517 64759820 RP11-257N14 RP11-620H23 21 1.809303 0.629619357 EHBP1, OTX1, LOC51057, MDH1, UGP2, VPS54, PELI1, HSPC159, AFTIPHILIN, SERTAD2 V_4288_LC1904_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007) p15-p142 65806171 69209042 RP11-72G10 RP11-626I2 36 3.402871 0.697554903 FLJ16124, MEIS1, ETAA16, C1D, LOC116143, LOC56902, PPP3R1, C2orf32, PLEK, LOC554251, C2orf13, PROKR1, ARHGAP25, BMP10, GDDR, GKN1, ANTXR1 p142 70492710 70939849 RP11-480F1 RP11-504O1 5 0.447139 0.727900016 TGFA, ADD2, FIGLA, CLEC4F, CD207 p14-p13.32 72282674 72634437 RP11-722C4 RP11-601G23 4 0.351763 0.520698666 p13.3-p13.22 74895324 80095842 RP11-588I4 RP11-332A19 51 5.200518 0.735571436 HK2, POLE4, TACR1, FLJ13391, MRPL19, C2orf3, LRRTM4, REG3G, REG1B, REG1A, REG3A, CTNNA2 V_4289_LC1968_Wong et al. (2007) p13.1-p122 81127914 85038515 RP11-282I7 RP11-600J5 36 3.910601 0.858886942 LOC388965, SUCLG1, FLJ37357, TMSB10 V_0020_LC1992_Iafrate et al. (2004) p12-p11.22 86301475 87032442 RP11-555P20 RP11-444N22 10 0.730967 0.477752973 REEP1, JMJD1A, VPS24, RNF103, FLJ13910, CD8A, CD8B p11.2

2 88767337 91033058 RP11-433P11 RP11-707D4 10 2.265721 0.656514252 RPIAV_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_4295_LC2046_Wong et al. (2007), V_4296_LC2046_Wong et al. (2007),

V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al. (2007), V_0373_LC2046_Bejjani et al. (2005) p11.2-p11.12 98579532 100776909 RP11-692C8 RP11-473B22 19 2.197377 1.082762618 MGC52110, UNC50, MGAT4A, MGC42367, TSGA10, C2orf15, LIPT1, LOC129531, MRPL30, LYG2, LOC129530, TXNDC9, EIF5B, REV1L, AFF3, LONRF2, CHST10, NMS, PDCL3 V_4301_LC2072_Wong et al. (2007), V_4302_LC2081_Wong et al. (2007) q11.2

2 137172934 168911768 RP11-498F10 RP11-771E18 297 31.738834 0.873533833

THSD7B, HNMT, LOC339745, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZFHX1B, ACVR2A, ORC4L, MBD5, EPC2, KIF5C, LOC130576, MGC52057, C2orf25, RND3, FLJ45645, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, ARL6IP6, RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, KIAA1189, PSCDBP, ACVR1C, ACVR1, UPP2, LOC130940, PKP4, LOC92196, TANC1, WDSUB1, BAZ2B, CD302, LY75, PLA2R1, ITGB6, RBMS1, TANK, PSMD14, TBR1, SLC4A10, DPP4, GCG, FAP,

IFIH1, GCA, KCNH7, FIGN, GRB14, COBLL1, FLJ39822, SCN3A, SCN2A2, TAIP-2, GALNT3, TTC21B, SCN1A, SCN9A, SCN7A, CMYA3, B3GALT1, STK39


V_4317_LC2405_Wong et al. (2007) q22.1-q24.3

2 176878524 196059613 CTD-2135J8 RP11-753O8 168 19.181089 0.867141117

MTX2, HNRPA3, NFE2L2, AGPS, TTC30B, TTC30A, PDE11A, DRB1, OSBPL6, PRKRA, DFNB59, FKBP7, PLEKHA3, TTN, FLJ39502, SESTD1, ZNF533, KIAA1604, UBE2E3, ITGA4, CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, C2orf10, FSIP2, FLJ44048, ZC3H15, ITGAV, KIAA1946, ZSWIM2, CALCRL, TFPI, GULP1, DIRC1, COL3A1, COL5A2, WDR75, SLC40A1, ASNSD1, FLJ25415, OSGEPL1, ORMDL1, PMS1, GDF8, MGC13057, HIBCH, INPP1, FLJ20160,

NAB1, GLS, STAT1, STAT4, MYO1B, OBFC2A, SDPR, TMEFF2V_0029_LC2519_Iafrate et al. (2004), V_4319_LC2466_Wong et al. (2007), V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007),

V_4322_LC2517_Wong et al. (2007), V_4323_LC2558_Wong et al. (2007) q31.1-q32.33 36784 2175975 RP11-359E9 RP11-477E8 19 2.139191 0.83229822 CHL1, CNTN6 p26.33 16823211 17512157 RP11-429M8 RP11-272B2 6 0.688946 0.693208321 PLCL2, TBC1D5 p24.33 17960804 26134875 RP11-451A20 CTD-2005J19 90 8.174071 0.897055041 SATB1, KCNH8, EFHB, RAB5A, C3orf48, PCAF, SGOL1, ZNF659, UBE2E2, UBE2E1, NKIRAS1, RPL15, NR1D2, THRB, RARB, TOP2B, NGLY1, OXSM V_4332_LC3007_Wong et al. (2007) p24.3-p24.23 29030412 31657151 RP11-684D11 RP11-356I4 25 2.626739 0.619744048 RBMS3, TGFBR2, GADL1, STT3B p24.1-p233 34495507 36294404 RP11-35C18 RP11-637N22 32 1.798897 0.437441851 ARPP-21 p22.33 59216540 67925091 RP11-115I11 RP11-629O13 72 8.708551 0.828342942 FHIT, PTPRG, C3orf14, ZNF312, CADPS, SYNPR, FLJ44379, THOC7, ATXN7, PSMD6, PRICKLE2, ADAMTS9, MAGI1, SLC25A26, LRIG1, KBTBD8, SUCLG2 p14.2-p14.13 69726331 70680030 RP11-384B24 RP11-679P15 7 0.953699 0.438111548 MITF p14.13 103147912 109971516 RP11-730D3 RP11-148O7 82 6.823604 0.835793047 ZPLD1, ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, KIAA1524, DZIP3, RETNLB V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007) q12.3-q13.133 110930566 112841688 RP11-204G14 RP11-489M5 25 1.911122 0.56678345 PVRL3, CD96, ZBED2 V_4350_LC3509_Wong et al. (2007) q13.13-q13.23 115931822 117153823 RP11-529M24 RP11-140J15 12 1.222001 0.496889197 ZBTB20, GAP43, LSAMP q13.313 117648008 118202766 RP11-747H24 RP11-805P16 4 0.554758 0.471357279 q13.313 118853160 122462940 RP11-768G7 RP11-450M12 37 3.60978 0.457072249 IGSF11, C3orf30, UPK1B, B4GALT4, CDGAP, TMEM39A, C3orf9, C3orf1, CD80, ADPRH, PLA1A, POPDC2, COX17, C3orf15, NR1I2, GSK3B, GPR156, FSTL1, NDUFB4, HGD, RABL3, GTF2E1 V_0035_LC3553_Iafrate et al. (2004) q13.32-q13.333 122845411 123611990 RP11-134G9 RP11-186L19 12 0.766579 0.573673291 HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58, C3orf28 q13.33-q21.13 124005684 124631897 RP11-652E3 RP11-570H22 5 0.626213 0.561978464 DIRC2, SEMA5B, PDIA5, SEC22A, ADCY5 q21.13 131340131 134606591 RP11-687B8 RP11-542F6 24 3.26646 0.700942319 FLJ35880, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBE1DC1, NPHP3, TMEM108, BFSP2 V_4353_LC3617_Wong et al. (2007), V_4354_LC3619_Wong et al. (2007) q21.3-q22.13 140220042 142671858 RP11-690B22 RP11-417C18 33 2.451816 0.746995918 LOC389151, FLJ46210, MRPS22, COPB2, RBP2, RBP1, NMNAT3, CLSTN2, TRIM42, SLC25A36, SPSB4, ACPL2, ZBTB38 V_0036_LC3666_Iafrate et al. (2004) q22.3-q233 143211566 144063823 RP11-343B5 RP11-185B3 8 0.852257 0.620480397 TFDP2, MGC40579, XRN1, ATR, PLS1, TRPC1, PCOLCE2 q233 144336827 148566228 RP11-745O22 RP11-597O1 38 4.229401 0.703347356 SLC9A9, C3orf58, PLOD2, PLSCR4, PLSCR2, PLSCR1 q23-q243 148983052 150154586 RP11-78O22 RP11-727E8 19 1.171534 0.782117158 AGTR1, CPB1, CPA3 q24

3 151629700 184007420 RP11-593O6 CTD-2380J5 293 32.37772 0.870994976

TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ, SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L, B3GALT3, NMD3, C3orf57, LOC131149, SI, SLITRK3, BCHE, FLJ23049, SERPINI2, WDR49, PDCD10, SERPINI1, GOLPH4, EVI1, MDS1, ARPM1, MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B, GHSR, TNFSF10, AADACL1,

ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1, KCNMB2, WIG1, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, TTC14, FXR1, DNAJC19, SOX2, ATP11B

V_0037_LC3745_Iafrate et al. (2004), V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_0040_LC3895_Iafrate et al. (2004), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007), V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et al. (2007), V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007), V_4363_LC3872_Wong et al. (2007) q25.1-q26.33

3 188060993 195170190 RP11-450G16 RP11-730E2 65 7.109197 0.624209072 ST6GAL1, RPL39L, RTP1, MASP1, RTP4, SST, RTP2, BCL6, LPP, FAM79B, TP73L, LEPREL1, CLDN1, CLDN16, UNQ846, IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12, C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1 V_2062_LC4004_Locke et al. (2006) q27.3-q293 198206824 198565291 RP11-432D10 RP11-472F12 5 0.358467 0.49524759 MFI2, DLG1 V_0043_LC4057_Iafrate et al. (2004) q294 69697457 70337363 RP11-468N14 RP11-634D24 4 0.639906 0.3507506 UGT2B10, UGT2A3, UGT2B7, UGT2B11, UGT2B28 V_0701_LC4909_Sharp et al. (2005), V_2073_LC4909_Locke et al. (2006) q13.25 82315817 85681054 RP11-797L3 RP11-468L13 50 3.365237 0.518859879 TMEM167, XRCC4, CSPG2, HAPLN1, EDIL3 V_0066_LC7143_Iafrate et al. (2004), V_4458_LC7135_Wong et al. (2007) q14.2-q14.35 87839781 89745630 RP11-721P4 RP11-795O19 25 1.905849 0.417011755 MEF2C, CETN3 V_4460_LC7164_Wong et al. (2007) q14.35 91005744 92593192 RP11-762I14 RP11-637D5 24 1.587448 0.515842183 V_4461_LC7181_Wong et al. (2007), V_4462_LC7186_Wong et al. (2007), V_4463_LC7186_Wong et al. (2007) q14.3-q155 104857873 105226539 RP11-380C10 RP11-258A16 3 0.368666 0.457851432 q21.35 106313830 107850411 RP11-510N6 RP11-473G22 10 1.536581 0.537085244 EFNA5, FBXL17 q21.35 122817963 123545104 RP11-551P24 RP11-208D11 8 0.727141 0.434808817 CSNK1G3 q23.25 124415191 125646346 RP11-508O6 CTD-2330G19 20 1.231155 0.407691103 q23.25 126285990 130460728 RP11-351L13 RP11-114H7 71 4.174738 0.413276767 MEGF10, LOC133619, CTXN3, SLC12A2, FBN2, SLC27A6, ISOC1, ADAMTS19, CSS3 V_0067_LC7505_Iafrate et al. (2004), V_4478_LC7522_Wong et al. (2007) q23.2-q31.15 135193500 137378295 RP11-240B18 RP11-399H3 50 2.184795 0.731752105 LOC153328, IL9, FBXL21, LECT2, TGFBI, SMAD5, TRPC7, SPOCK1, KLHL3, HNRPA0, MYOT, PKD2L2, C5orf5 q31.1-q31.25 138012127 138570079 RP11-525B18 RP11-623M19 3 0.557952 0.442036118 CTNNA1, LRRTM2, SIL1 q31.25 142315631 144557803 CTD-2024C20 RP11-706L1 27 2.242172 0.555242282 ARHGAP26, NR3C1, HB-1, YIPF5, KCTD16 q31.3-q325 147005348 148683824 RP11-228N19 RP11-171N9 26 1.678476 0.372457001 JAKMIP2, SPINK1, SCGB3A2, MGC23985, SPINK5, SPINK5L2, SPINK6, SPINK5L3, SPINK7, SPINK9, FBXO38, HTR4, ADRB2, SH3TC2, ABLIM3, FLJ36748 q32-q33.15 157865206 159380143 RP11-116E3 RP11-708F10 13 1.514937 0.391449357 EBF, FLJ31951, UBLCP1, IL12B, ADRA1B, TTC1 q33.35 160589933 167264558 RP11-326L23 CTD-2026J1 61 6.674625 0.602273607 GABRB2, GABRA6, GABRA1, GABRG2, CCNG1, NUDCD2, HMMR, MAT2B, ODZ2 q345 170144392 170872930 RP11-453D13 RP11-483M21 7 0.728538 0.450169581 GABRP, RANBP17, TLX3, NPM1, FGF18 q35.16 15306603 16532869 RP11-560J1 RP11-337H11 15 1.226266 0.499114295 JARID2, DTNBP1, MYLIP, GMPR, ATXN1 p23-p22.36 122306046 124812878 RP11-121I18 RP11-716B24 26 2.506832 0.373653062 HSF2, SERINC1, PKIB, FABP7, SMPDL3A, C6orf213, TRDN, TCBA1 V_0090_LC8741_Iafrate et al. (2004) q22.316 135889140 139072995 RP11-325M6 RP11-58H10 31 3.183855 0.466253386 PDE7B, FAM54A, BCLAF1, MAP7, MAP3K5, PEX7, SLC35D3, IL20RA, IL22RA2, IFNGR1, OLIG3, TNFAIP3, PERP, KIAA1244, PBOV1, HEBP2 q23.37 40844 292633 CTD-2245C5 CTD-2036F6 5 0.251789 0.334557438 FAM20C p22.37 7010427 11238744 RP11-174C14 RP11-99J6 35 4.228317 1.299892523 C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631, NDUFA4, PHF14 V_2099_LC9264_Locke et al. (2006), V_4525_LC9277_Wong et al. (2007) p22.1-p21.37 20878020 25439319 RP11-764C11 RP11-356D8 44 4.561299 0.817582481 SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7, DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9 V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007) p15.3-p15.27 26024586 27517906 RP11-216K12 CTD-2341I6 15 1.49332 1.363286754 NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1 p15.2

7 29607499 38785553 RP11-707H2 RP11-21G7 90 9.178054 1.977117268WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16, PDE1C, LSM5, KIAA0241, LOC441208, KBTBD2, LOC441212, FKBP9, NT5C3, RP9,

PTHB1, BMPER, AAA1, GPR154, TBX20, FLJ22313, KIAA1706, KIAA0895, ANLN, AOAH, ELMO1, GPR141, TXNDC3, SFRP4, EPDR1, STARD3NL, TARP, AMPH, VPS41 V_0719_LC9421_Sharp et al. (2005), V_4530_LC9436_Wong et al. (2007) p15.1-p14.17 39479903 40362317 RP11-452J11 RP11-467L12 8 0.882414 0.319890436 C7orf36, RALA, CDC2L5, C7orf11, C7orf10 p14.17 44298622 46335064 RP11-112B7 RP11-432O19 24 2.036442 0.59913265 CAMK2B, NUDCD3, NPC1L1, DDX56, TMED4, OGDH, DKFZp761I212, PPIA, H2AFV, PURB, MYO1G, CCM2, TBRG4, RAMP3, ADCY1, IGFBP1, IGFBP3 V_4533_LC9471_Wong et al. (2007) p137 47725479 47992521 RP11-482G3 RP11-61L9 3 0.267042 0.459412318 PKD1L1, FLJ21075, HUS1 p12.37 49336160 50969075 RP11-806B13 RP11-685G6 17 1.632915 0.568908547 VWC2, ZPBP, ZNFN1A1, FIGNL1, DDC, GRB10 V_4536_LC9495_Wong et al. (2007) p12.3-p12.17 51209006 51543316 RP11-482H9 RP11-807G4 3 0.33431 0.290689042 COBL p12.18 47610135 50661676 CTD-2026P11 RP11-738G5 28 3.051541 0.675423694 KIAA0146, CEBPD, PRKDC, MCM4, UBE2V2, EFCAB1, SNAI2, C8orf22 V_4591_LC10578_Wong et al. (2007) q11.1-q11.228 53823346 55783011 RP11-102D24 CTD-2015J22 18 1.959665 0.402145873 NPBWR1, OPRK1, ATP6V1H, RGS20, TCEA1, LYPLA1, MRPL15, SOX17, RP1 q11.23-q12.18 56515407 57210565 RP11-359L20 RP11-22E14 4 0.695158 0.402701139 XKR4, TMEM68, NCOA6IP, LYN, RPS20, MOS q12.18 63905929 66325607 RP11-777A18 RP11-350B15 20 2.419678 0.592458817 FAM77D, FLJ39198, GGH, TTPA, YTHDF3, BHLHB5, CYP7B1 V_4596_LC10633_Wong et al. (2007), V_4597_LC10634_Wong et al. (2007), V_4598_LC10640_Wong et al. (2007) q12.3-q13.18 67127098 68770395 RP11-164L7 RP11-96L3 11 1.643297 0.544782547 DNAJC5B, TRIM55, CRH, RRS1, ADHFE1, C8orf46, MYBL1, VCPIP1, C8orf44, SGK3, C8orf45, LOC286187, COPS5, CSPP1, ARFGEF1, CPA6 q13.1-q13.28 69260236 76729008 RP11-158I6 RP11-553I13 57 7.468772 0.551143852 C8orf34, SULF1, SLCO5A1, PRDM14, NCOA2, TRAM1, LACTB2, XKR9, EYA1, MSC, TRPA1, KCNB2, TERF1, RPESP, RPL7, RDH10, STAU2, UBE2W, TCEB1, TMEM70, LY96, JPH1, GDAP1, PI15, CRISPLD1, HNF4G V_4599_LC10697_Wong et al. (2007) q13.2-q21.118 78530552 81648851 RP11-37E7 RP11-48B3 20 3.118299 0.613770305 PKIA, C8orf70, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10 V_0119_LC10711_Iafrate et al. (2004) q21.12-q21.13

8 83081153 89834396 RP11-99H20 RP11-561O8 68 6.753243 0.594269249 LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1, WDR21C, MMP16

V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007), V_4605_LC10727_Wong et al. (2007),

V_4606_LC10731_Wong et al. (2007) q21.13-q21.38 94300023 96007255 RP11-674P23 RP11-682F2 14 1.707232 0.606937028 RBM12B, TMEM67, PPM2C, CDH17, GEM, RAD54B, KIAA1429, RBM35A, DPY19L4, INTS8, CCNE2 V_4607_LC10749_Wong et al. (2007) q22.18 101680566 102121785 RP11-403H17 RP11-703F20 4 0.441219 0.382244318 MGC39715, PABPC1, YWHAZ q22.38 102476966 105015142 RP11-262O17 RP11-188I6 18 2.538176 0.622185931 GRHL2, NCALD, RRM2B, EDD1, ODF1, KLF10, AZIN1, ATP6V1C1, BAALC, FZD6, CTHRC1, SLC25A32, WDSOF1, RIMS2 q22.38 106717632 107138239 RP11-624K22 RP11-34P2 3 0.420607 0.431825536 ZFPM2 q23.18 108678924 118612478 RP11-529F12 RP11-30P9 83 9.933554 0.704353309 RSPO2, EIF3S6, TTC35, TMEM74, TRHR, NUDCD1, ENY2, PKHD1L1, EBAG9, FLJ20366, KCNV1, CSMD3, TRPS1, EIF3S3, C8orf53, RAD21, LOC441376, SLC30A8, THRAP6 V_4608_LC10811_Wong et al. (2007) q23.1-q24.11

8 118799432 127954207 RP11-742D20 RP11-633P13 77 9.154775 0.599526911EXT1, SAMD12, TNFRSF11B, COLEC10, MAL2, NOV, ENPP2, TAF2, DCC1, DEPDC6, COL14A1, MRPL13, MTBP, SNTB1, HAS2, ZHX2, DERL1, WDR67, FAM83A, C8orf76, ZHX1, ATAD2, C8orf32, FBXO32, C8ORFK36, ANXA13, FAM91A1, C8ORFK23,

C8orf54, TMEM65, TRMT12, RNF139, TATDN1, NDUFB9, MTSS1, ZNF572, SQLE, KIAA0196, C8orf36, TRIB1, FAM84B q24.11-q24.21

8 128665937 143824288 RP11-440N18 RP11-774L4 137 15.158351 0.744328531MYC, TMEM75, MLZE, FAM49B, DDEF1, ADCY8, KIAA0143, OC90, KCNQ3, LRRC6, TMEM71, PHF20L1, TG, SLA, WISP1, NDRG1, ST3GAL1, ZNF406, KHDRBS3, C8ORFK32, COL22A1, KCNK9, NIBP, CHRAC1, EIF2C2, PTK2, DENND3, SLC45A4,

GPR20, PTP4A3, FLJ43860, TSNARE1, BAI1, ARC, JRK, PSCA, LY6K, C8orf55, SLURP1V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_4609_LC10877_Wong et al. (2007), V_4610_LC10912_Wong et al. (2007),


9 44924895 45975582 RP11-157L3 RP11-21A19 4 1.050687 0.418820976

V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_4629_LC11330_Wong et al. (2007), V_4631_LC11330_Wong et al. (2007), V_4632_LC11330_Wong et al. (2007), V_4633_LC11330_Wong et al. (2007), V_4634_LC11330_Wong et al. (2007), V_4638_LC11330_Wong et al. (2007) p11.2

9 46162950 119548855 RP13-628C5 RP11-523C3 479 73.385905 1.12529805

LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5, C9orf71, PIP5K1B, C9orf42, PRKACG, FXN, TJP2, C9orf61, APBA1, LOC138255, MAMDC2, SMC5, KLF9, TRPM3, TMEM2, C9orf77, C9orf85, GDA, ZA20D2, TMC1, ALDH1A1, ANXA1, RORB, TRPM6, C9orf40, C9orf41, C9orf95, OSTF1, PCSK5, RFK, GCNT1, KIAA0367, C9orf65, LOC442425, VPS13A, GNA14, GNAQ, PSAT1, TLE4, TLE1, FLJ46321, RASEF, FRMD3, C9orf103, UBQLN1, GKAP1, KIF27, C9orf64, HNRPK, C9orf76, SLC28A3, NTRK2, AGTPBP1, MAK10, GOLPH2, C9orf153, HBLD2, ZCCHC6, GAS1, FLJ45537, DAPK1, CTSL1, HCTSL-s, C9orf79, CCRK, SPIN, C9orf121, C9orf47, EDG3, SHC3, CKS2, SECISBP2, LOC349236,

SEMA4D, GADD45G, DIRAS2, SYK, AUH, NFIL3, ROR2, SPTLC1, IARS, NOL8, RP11-19J3.3, OGN, OMD, ASPN, ECM2, IPPK, BICD2, ANKRD19, ZNF484, FGD3, SUSD3, C9orf89, NINJ1, WNK2, C9orf10OS, C9orf10, PHF2, BARX1, PTPDC1, ZNF169, HIATL1, FBP2, FBP1, C9orf3, FANCC, PTCH1, LOC375748, C9orf102, HSD17B3, SLC35D2, ZNF367, HABP4, CDC14B, C9orf21, ZNF510, FLJ16636, FAM22G, CTSL2, ZNF322B, KIAA1529, TDRD7, TMOD1, C9orf97, NCBP1, XPA, FOXE1, C9orf156,

HEMGN, ANP32B, NANS, TRIM14, CORO2A, TBC1D2, GABBR2, ANKS6, GALNT12, COL15A1, TGFBR1, ALG2, SEC61B, NR4A3

V_0129_LC11470_Iafrate et al. (2004), V_0131_LC11661_Iafrate et al. (2004), V_0743_LC11344_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005), V_2132_LC11344_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2141_LC11344_Locke et al. (2006), V_2144_LC11344_Locke et al. (2006), V_2145_LC11344_Locke et al. (2006), V_2146_LC11344_Locke et al. (2006), V_2147_LC11344_Locke et al. (2006), V_2148_LC11344_Locke et al. (2006), V_2150_LC11344_Locke et al. (2006), V_2151_LC11344_Locke et al. (2006), V_4625_LC11344_Wong et al. (2007), V_4630_LC11344_Wong et al. (2007), V_4636_LC11330_Wong et al. (2007), V_4639_LC11344_Wong et al. (2007), V_4640_LC11344_Wong et al. (2007), V_4641_LC11344_Wong et al. (2007), V_4642_LC11344_Wong et al. (2007), V_4643_LC11388_Wong et al. (2007), V_4644_LC11438_Wong et al. (2007), V_4645_LC11529_Wong et al. (2007), p11.2-q33.1

9 119824847 120905046 RP11-773I1 CTD-2005P19 8 1.080199 0.403360252 V_4653_LC11698_Wong et al. (2007) q33.19 122093595 123326438 RP11-627D3 RP11-162D16 9 1.232843 0.37465209 CDK5RAP2, MEGF9, FBXW2, PSMD5, PHF19, TRAF1, C5, CEP110, RAB14, GSN, STOM q33.29 123967113 125712321 RP11-498E2 RP11-640N15 18 1.745208 0.35737227 C9orf18, LHX6, RBM18, MRRF, PTGS1, OR1J1, OR1J2, OR1J4, OR1N1, OR1N2, OR1L8, OR1Q1, OR1B1, OR1L1, OR1L3, OR1L4, OR1L6, OR5C1, OR1K1, PDCL, MNAB, ZBTB6, ZBTB26, RABGAP1, GPR21, STRBP, CRB2, DENND1A q33.29 133345368 133982666 RP13-646O12 RP11-32B11 8 0.637298 0.43279765 POMT1, UCK1, RAPGEF1, CRSP8 q34.1310 59007501 60552579 RP11-371O16 RP11-456A18 15 1.545078 0.711099768 IPMK, C10orf70, UBE2D1, TFAM, BICC1 V_4696_LC12350_Wong et al. (2007) q21.110 118162780 119786456 RP11-655F2 RP11-280F22 14 1.623676 0.567549523 PNLIPRP3, PNLIP, PNLIPRP1, PNLIPRP2, C10orf82, HSPA12A, KIAA1598, VAX1, KCNK18, SLC18A2, PDZD8, EMX2, RAB11FIP2 q25.3-q26.1110 122847905 124311827 RP11-604B15 RP11-619E4 10 1.463922 0.592989794 FGFR2, ATE1, C10orf86, TACC2, C10orf87, PLEKHA1, HTRA1, DMBT1 q26.12-q26.13

11 4402211 6234798 RP11-36K1 RP11-645I8 19 1.832587 0.285251733

OR52K2, OR52K1, OR52M1, C11orf40, OR52I2, OR52I1, TRIM68, OR51D1, OR51E1, OR51E2, OR51F1, OR52R1, OR51F2, OR51S1, OR51T1, OR51A7, OR51G2, OR51G1, OR51A4, OR51A2, MMP26, OR51L1, OR52J3, OR52E2, OR52A4, OR52A5, OR52A1, OR51V1, HBB, HBD, HBG1, HBG2, HBE1, OR51B4, OR51B2, OR51B5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, UBQLNL, OR52H1, OR52B6, TRIM6, TRIM6-TRIM34, TRIM34, TRIM5, TRIM22, OR56B1, OR52N4, OR52N5,

OR52N1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR52L1, OR56A4, OR56A1, OR56B4, OR52B2, OR52W1, C11orf42, C11orf56, CNGA4 V_2164_LC12925_Locke et al. (2006) p15.4

11 6580312 7946476 RP11-732A19 RP11-494M8 10 1.366164 0.284424921 KIAA0409, ILK, TAF10, TPP1, DCHS1, MRPL17, OR2AG2, OR2AG1, OR6A2, OR10A5, OR10A2, OR10A4, OR2D2, OR2D3, ZNF215, ZNF214, NLRP14, HNRNPG-T, SYT9, OLFML1, PPFIBP2, CYB5R2, OVCH2, OR5P2, OR5P3, OR10A6, OR10A3, NALP10 p15.4

11 10380958 17596537 RP11-554G24 RP11-14D9 71 7.215579 0.512980405AMPD3, RNF141, XLKD1, MRVI1, CTR9, EIF4G2, LOC58486, GALNTL4, USP47, DKK3, MICAL2, MICALCL, PARVA, TEAD1, LOC644943, ARNTL, BTBD10, PTH, MLSTD2, SPON1, RRAS2, COPB, PSMA1, PDE3B, CYP2R1, CALCA, CALCB, INSC, SOX6,

C11orf58, PLEKHA7, RPS13, PIK3C2A, NUCB2, KCNJ11, ABCC8, USH1C V_0144_LC12977_Iafrate et al. (2004), V_2165_LC12997_Locke et al. (2006), V_4731_LC12993_Wong et al. (2007) p15.4-p15.111 17737079 18460488 RP11-293H15 RP11-372I19 10 0.723409 0.265014546 KCNC1, SERGEF, TPH1, SAAL1, MRGPRX3, MRGPRX4, SAA4, SAA2, SAA1, HPS5, GTF2H1, LDHA, LDHC, LDHAL6A, TSG101 p15.1

11 18655217 31649820 RP13-630L24 RP11-98A15 138 12.994603 0.670313499TMEM86A, IGSF22, PTPN5, MRGPRX1, MRGPRX2, ZDHHC13, CSRP3, E2F8, NAV2, DBX1, HTATIP2, PRMT3, SLC6A5, NELL1, TMEM16E, SLC17A6, FANCF, GAS2, LUZP2, TMEM16C, MUC15, SLC5A12, LOC387758, BBOX1, CCDC34, LGR4, LIN7C,

BDNF, KIF18A, METT5D1, KCNA4, FSHB, C11orf46, MPPED2, DCDC5, DCDC1, ZCSL3, IMMP1L, ELP4 V_0145_LC13078_Iafrate et al. (2004), V_2166_LC13021_Locke et al. (2006), V_4732_LC13002_Wong et al. (2007), V_4733_LC13087_Wong et al. (2007) p15.1-p1311 34262603 39442846 RP11-446N9 RP11-294N14 54 5.180243 0.359238141 ABTB2, CAT, ELF5, EHF, APIP, PDHX, CD44, SLC1A2, DKFZP586H212, FJX1, TRIM44, LDLRAD3, C11orf55, COMMD9, FLJ14213, TRAF6, RAG1, RAG2, C11orf74 V_4736_LC13107_Wong et al. (2007), V_4737_LC13107_Wong et al. (2007) p13-p1212 16595 2518033 RP13-492B24 RP11-391L19 24 2.501438 0.925754261 IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2, DCP1B, CACNA1C V_4765_LC13757_Wong et al. (2007) p13.3312 3112432 6013605 RP11-275E21 RP11-58H19 25 2.901173 0.648005265 TSPAN9, PRMT8, MGC4266, PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B, VWF V_0161_LC13778_Iafrate et al. (2004) p13.32-p13.3112 7145687 7779709 RP11-514K11 RP11-797A12 4 0.634022 0.386114043 C1RL, RBP5, CLSTN3, PEX5, LOC341392, CD163L1, CD163, APOBEC1, GDF3, DPPA3, CLEC4C p13.31

12 8486385 31016250 RP11-561P12 RP11-138B5 217 22.529865 0.821202436

CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, FAM80B, A2ML1, PHC1, M6PR, KLRG1, C12orf33, A2M, PZP, KLRB1, CLEC2D, DCAL1, CD69, KLRF1, CLEC2B, CLEC12A, CLEC1B, CLEC12B, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRK1, KLRC4, KLRC3, KLRC2, KLRC1, KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4,

PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19, CDKN1B, APOLD1, DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP, FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4, MGP, C12orf46, ARHGDIB, PDE6H, RERG, PTPRO, EPS8, STRAP, DERA, MGST1, LMO3, FLJ22655, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5, FLJ32894, BCAT1, LRMP, CASC1, LYRM5, KRAS, FLJ36004, RASSF8, BHLHB3, SSPN, ITPR2, C12orf11, FGFR1OP2, TM7SF3, SURB7,

LOC728858, STK38L, ARNTL2, PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH, CCDC91, MLSTD1, ERGIC2, OVCH1, TMTC1, IPOV_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007),

V_4770_LC13869_Wong et al. (2007), V_4772_LC13891_Wong et al. (2007), V_4773_LC13907_Wong et al. (2007) p13.31-p11.2112 32390460 34195150 RP11-637N6 RP11-657N15 17 1.80469 0.393124198 BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10 V_2170_LC13972_Locke et al. (2006) p11.21-p11.1

12 36900145 47460844 RP11-657C20 RP11-676A5 113 10.560699 0.628672813ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4,

AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA, C12orf41, CCNT1, ADCY6 V_4776_LC14002_Wong et al. (2007) q12-q13.12

12 49116691 51476774 RP11-364J16 RP11-563M1 24 2.360083 0.48586237LARP4, DIP2B, ATF1, TMPRSS12, METTL7A, SLC11A2, LETMD1, C12orf22, TFCP2, POU6F1, DAZAP2, LOC57228, BIN2, ELA1, GALNT6, SLC4A8, SCN8A, LOC401720, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRTHB1,

KRTHB6, KRTHB3, KRT85, KRTHB4, KRTHB2, K6HF, KRT6B, KRT6C, KRT6A, KRT5, KRT6IRS, K6IRS4, K6IRS2, K6IRS3, KRT2A, KRT1, KRT1B, KRT76, KRT3 V_4778_LC14057_Wong et al. (2007) q13.1312 53865974 54147293 CTD-2155J10 RP11-110A12 3 0.281319 0.439072 OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2 V_4780_LC14080_Wong et al. (2007) q13.2

12 56668471 67626516 RP11-489P6 RP11-797C20 137 10.958045 1.011322948LRIG3, SLC16A7, FAM19A2, USP15, MON2, C12orf61, AVPR1A, DPY19L2, TMEM5, SRGAP1, FLJ32549, XPOT, TBK1, RASSF3, GNS, WIF1, LEMD3, MSRB3, HMGA2, C12orf31, TMBIM4, IRAK3, HELB, GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1,

RAP1B, NUP107, SLC35E3, MDM2, CPM V_2171_LC14120_Locke et al. (2006) q14.1-q15

12 69360062 102208426 RP11-635P17 RP11-338F16 309 32.848364 0.847977049

PTPRR, TSPAN8, LGR5, PSRC2, THAP2, TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1, NUDT4, UBE2N, MRPL42, SOCS2, CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT, METAP2, USP44, NTN4, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, PCTK2, C12orf63, NEDD1, TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, TMEM16D, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM, CCDC53, NUP37, C12orf48,

PMCH, IGF1, PAH, ASCL1V_0165_LC14278_Iafrate et al. (2004), V_4774_LC14229_Wong et al. (2007), V_4781_LC14179_Wong et al. (2007), V_4782_LC14235_Wong et al. (2007),

V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007), V_4785_LC14298_Wong et al. (2007) q15-q23.212 103566212 105944772 RP11-419A23 RP11-263M3 21 2.37856 0.602682935 CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NUAK1, CKAP4, TCP11L2, POLR3B, RFX4, RIC8B, C12orf23, MTERFD3, CRY1 q23.3

12 120743308 122954188 RP11-403N24 CTD-2210D4 26 2.21088 0.797116193HPD, PSMD9, WDR66, BCL7A, MLXIP, LRRC43, IL31, B3GNT4, DIABLO, VPS33A, RSN, ZCCHC8, FLJ11021, KNTC1, GPR109A, GPR109B, GPR81, DENR, CCDC62, HIP1R, VPS37B, ABCB9, OGFOD2, ARL6IP4, PITPNM2, MPHOSPH9, C12orf65,

CDK2AP1, SBNO1, SETD8, MGC7036, U1SNRNPBP, FLJ39378, TMED2, DDX55, EIF2B1, GTF2H3, C12orf38, ATP6V0A2, DNAH10 V_4790_LC14504_Wong et al. (2007) q24.3112 124970573 126961021 RP11-263I23 RP11-378H14 20 1.990448 0.482164606 V_4793_LC14538_Wong et al. (2007) q24.32

13 59241133 66063739 RP11-150H23 RP11-655G17 49 6.822606 0.502731247 DIAPH3, TDRD3, PCDH20, PCDH9V_0170_LC14945_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007),

V_4808_LC14946_Wong et al. (2007) q21.2-q21.3213 67314830 72289167 RP11-771E21 RP11-689G15 34 4.974337 0.493649343 KLHL1, DACH1, LOC440145, FLJ22624, KIAA1008, C13orf24 V_4480_LC14964_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007) q21.33-q22.113 82307672 85938703 RP11-360P17 RP11-554P5 24 3.631031 0.481862737 SLITRK1, SLITRK6 V_0172_LC15055_Iafrate et al. (2004), V_4813_LC15063_Wong et al. (2007) q31.113 87565499 90052400 RP11-411D5 RP11-158A8 12 2.486901 0.643000195 q31.2-q31.316 13247961 14308149 RP11-610N1 RP11-318N6 9 1.060188 0.321560088 ERCC4, MKL2 p13.1216 15632085 16314211 RP11-585P8 RP11-517A5 6 0.682126 0.341859437 LKAP, NDE1, MYH11, C16orf63, ABCC1, ABCC6 V_2203_LC16733_Locke et al. (2006), V_2204_LC16736_Locke et al. (2006), V_4926_LC16734_Wong et al. (2007) p13.1116 32190210 32440412 RP11-25N10 RP11-626K17 6 0.250202 0.415980317 V_2213_LC16821_Locke et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4944_LC16821_Wong et al. (2007), V_4945_LC16821_Wong et al. (2007) p11.216 33207279 33579116 RP13-392N17 RP11-572F9 4 0.371837 0.473110941 V_0796_LC16821_Sharp et al. (2005), V_2215_LC16821_Locke et al. (2006), V_4947_LC16821_Wong et al. (2007), V_4948_LC16821_Wong et al. (2007) p11.216 74374510 76266247 RP11-734K9 RP11-196O9 23 1.891737 0.316996027 CNTNAP4, MON1B, ADAMTS18 q23.117 33267468 33697018 CTD-2344A6 RP11-72I20 4 0.42955 0.857499887 TBC1D3B, TBC1D3 V_5002_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al. (2007) q12

17 35720000 36762766 RP11-686E5 RP13-649M11 9 1.042766 0.940358795RARA, GJC1, TOP2A, IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4,

KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A V_0205_LC17492_Iafrate et al. (2004) q21.217 37533693 37977331 RP11-358B23 RP11-383F15 4 0.443638 0.510335316 RAB5C, KCNH4, HCRT, LGP1, STAT5B, STAT5A, STAT3, PTRF, ATP6V0A1, NAGLU, HSD17B1, COASY, MLX q21.2-q21.3117 42833683 43120185 RP11-109I14 RP11-104O5 3 0.286502 0.909558434 C17orf57, NPEPPS, KPNB1 V_0804_LC17530_Sharp et al. (2005), V_2229_LC17530_Locke et al. (2006) q21.3217 43565909 44064405 RP11-456D7 RP11-420B16 6 0.498496 1.12781257 SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9 q21.3217 46194973 49357882 RP11-506D12 RP11-153A6 30 3.162909 1.386501016 WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2, MBTD1, UTP18, CA10, KIF2B V_0209_LC17565_Iafrate et al. (2004), V_5018_LC17559_Wong et al. (2007) q21.33-q2217 64276602 67547347 RP11-78O3 RP11-709B9 32 3.270745 0.638244654 ABCA8, ABCA9, ABCA6, ABCA10, ABCA5, MAP2K6, KCNJ16, KCNJ2 V_0211_LC17666_Iafrate et al. (2004), V_5028_LC17688_Wong et al. (2007) q24.2-q24.318 17653 1105733 RP11-683L23 RP11-267C19 13 1.08808 0.802060084 USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1 V_5044_LC17825_Wong et al. (2007) p11.3218 7070741 7458085 RP11-524N13 CTD-2118M12 5 0.387344 0.429897937 LAMA1 p11.31-p11.2318 8307391 9800251 RP11-654J20 RP11-422E1 19 1.49286 0.485660022 PTPRM, RAB12, KIAA0802, NDUFV2, ANKRD12, TWSG1, RALBP1, PPP4R1, RAB31 V_2236_LC17918_Locke et al. (2006), V_5045_LC17914_Wong et al. (2007) p11.23-p11.2218 11148957 15235838 RP11-93H10 RP11-11O7 39 4.086881 0.626893812 GNAL, CHMP1B, MPPE1, IMPA2, CIDEA, TUBB6, AFG3L2, C18orf43, SPIRE1, CEP76, TNFSF5IP1, PTPN2, SEH1L, CEP192, C18orf1, C18orf19, RNMT, MC5R, MC2R, ZNF519, MGC26718 V_5046_LC17976_Wong et al. (2007) p11.2119 34733312 35094215 RP11-272C23 CTD-2057D4 4 0.360903 1.073358752 POP4, PLEKHF1, C19orf12, CCNE1 q12

19 37455881 42294640 RP11-449C9 RP11-240N23 49 4.838759 0.647485775

ZNF507, MGC35440, DPY19L3, PDCD5, ANKRD27, RGS9BP, ECAT8, SLC7A9, FLJ14640, C19orf40, RHPN2, GPATC1, LOC126248, LRP3, SLC7A10, CEBPA, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, MGC13096, UBA2, WTIP, LOC284402, ZNF302, ZNF181, ZNF599, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467, ZD52F10, SBSN, GAPDHS, NIFIE14, ATP4A,

MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6, LOC148137, SNX26, PRODH2, NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565, ZNF146, KIAA1559, ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345, DKFZp779O175, ZNF568, ZNF420 V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007) q13.11-q13.12

19 45333542 46750502 RP11-725P4 RP11-450D10 16 1.41696 0.421995795MAP3K10, TTC9B, FLJ13265, AKT2, FLJ36888, PLD3, HIPK4, PRX, SERTAD1, SERTAD3, BLVRB, SPTBN4, SHKBP1, LTBP4, NUMBL, ADCK4, ITPKC, C19orf54, SNRPA, MIA, RAB4B, EGLN2, CYP2A6, CYP2A7, CYP2B6, CYP2A13, CYP2F1, CYP2S1, AXL,

HNRPUL1, MGC20255, TGFB1, MGC4093, TMEM91, EXOSC5, BCKDHA, B3GNT8, FLJ10241 V_5100_LC19016_Wong et al. (2007) q13.219 47284211 47474962 RP11-796K15 CTD-2253J5 3 0.190751 0.547025415 POU2F2, DEDD2, ZNF526, GSK3A, ERF q13.219 49078420 49934259 RP11-780K18 RP11-390O2 7 0.855839 0.619445015 ZNF45, ZNF221, ZNF155, ZNF230, ZNF222, ZNF223, ZNF284, ZNF224, ZNF225, ZNF234, ZNF226, ZNF227, ZNF233, ZNF235, ZNF228, ZNF285A, ZNF229, ZNF180, PVR, CEACAM19, CEACAM16 V_0221_LC19039_Iafrate et al. (2004), V_2245_LC19036_Locke et al. (2006) q13.3120 35841263 36794280 RP11-20K14 RP11-106B21 8 0.953017 0.374270282 CTNNBL1, C20orf102, KIAA0406, C20orf77, TGM2, KIAA1755, BPI, LBP, KIAA1219, SMAF1, SLC32A1 V_5136_LC19617_Wong et al. (2007) q11.2320 41194922 43051292 RP11-440P21 RP11-16D6 17 1.85637 0.439729909 PTPRT, SFRS6, L3MBTL, SGK2, IFT52, MYBL2, FAM112A, C20orf100, JPH2, C20orf111, GDAP1L1, C20orf142, R3HDML, HNF4A, C20orf121, SERINC3, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4 q13.11-q13.1220 43663484 44287243 RP11-770N8 RP11-373A15 5 0.623759 0.313464744 WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13, SPINT4, WFDC3, DNTTIP1, UBE2C, TNNC2, C20orf161, SNX21, ACOT8, ZSWIM3, ZSWIM1, C20orf165, NEURL2, CTSA, PLTP, C20orf67, ZNF335, MMP9, SLC12A5, NCOA5, CD40, CDH22 q13.12

20 45021768 50340713 RP11-792C5 RP11-13O15 45 5.318945 0.893502838EYA2, PRKCBP1, NCOA3, SULF2, PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, ZNF313, SNAI1, Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175, PARD6B, BCAS4, ADNP, DPM1,

MOCS3, KCNG1, NFATC2, ATP9A, SALL4, ZFP64 V_2251_LC19741_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007), V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q13.12-q13.220 59637753 61084113 RP11-30D13 RP11-166C8 7 1.44636 0.824674066 CDH4, TAF4, LSM14B, PSMA7, SS18L1, GTPBP5, HRH3, OSBPL2, ADRM1, LAMA5, RPS21, CABLES2, C20orf151, GATA5, FLJ30313, C20orf166, SLCO4A1, NTSR1, C20orf20, OGFR, COL9A3, TCFL5, DIDO1, C20orf11, C20orf59 V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et al. (2007) q13.33

20 61564622 62434349 RP11-95N13 RP11-350G15 7 0.869727 1.086008868KCNQ2, EEF1A2, C20orf149, PTK6, SRMS, C20orf195, PRIC285, GMEB2, STMN3, RTEL1, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, BTBD4, C20orf135, TPD52L2, DNAJC5, UCKL1, GM632, SAMD10, PRPF6, LOC284739, SOX18, TCEA2, RGS19,

OPRL1, LOC198437, NPBWR2, MYT1, PCMTD2 V_2252_LC19985_Locke et al. (2006), V_5149_LC19985_Wong et al. (2007), V_5150_LC19985_Wong et al. (2007) q13.33

21 13270446 24161335 CTD-2587E15 RP11-14F6 96 10.890889 0.794162131 ANKRD21, LOC441956, LIPI, RBM11, STCH, SAMSN1, NRIP1, USP25, C21orf34, CXADR, BTG3, C21orf91, CHODL, PRSS7, NCAM2

V_0231_LC20086_Iafrate et al. (2004), V_0232_LC20109_Iafrate et al. (2004), V_0810_LC20058_Sharp et al. (2005), V_0811_LC20058_Sharp et al. (2005), V_2254_LC20058_Locke et al. (2006), V_2255_LC20058_Locke et al. (2006), V_5157_LC20058_Wong et al. (2007), V_5158_LC20061_Wong et al. (2007),


21 24595071 33177704 RP11-776I14 RP11-630H12 74 8.582633 0.50321381

MRPL39, JAM2, ATP5J, GABPA, APP, CYYR1, ADAMTS1, ADAMTS5, HEMK2, ZNF294, C21orf6, USP16, CCT8, C21orf7, BACH1, GRIK1, CLDN17, CLDN8, KRTAP26-1, KRTAP27-1, KRTAP23-1, KRTAP13-2, KRTAP13-1, KRTAP13-3, KRTAP13-4, KRTAP151, KRTAP19-1, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP6-3, KRTAP6-2, KRTAP22-1, KRTAP6-1, KRTAP20-1, KRTAP20-2, KRTAP21-2, KRTAP21-1, KRTAP8-1, KRTAP11-1, TIAM1, SOD1, SFRS15, HUNK,

C21orf45, MRAP, C21orf119, C21orf63, TCP10L, C21orf59, SYNJ1, C21orf66, C21orf62 V_5161_LC20178_Wong et al. (2007) q21.2-q22.1121 43010930 44194069 RP11-53A21 RP11-439M10 12 1.183139 0.582901161 PDE9A, WDR4, NDUFV3, PKNOX1, CBS, U2AF1, CRYAA, FLJ41733, SNF1LK, HSF2BP, KIAA0179, PDXK, CSTB, RRP1, AGPAT3 V_5162_LC20269_Wong et al. (2007) q22.322 17466004 17777126 RP11-800B2 CTD-2300P14 4 0.311122 0.599674375 DGCR2, DGCR14, TSSK2, GSCL, SLC25A1, CLTCL1, HIRA q11.21

22 20744143 28988277 RP11-307O16 RP11-86H17 67 8.244134 1.213559351

VPREB1, SUHW2, SUHW1, PRAME, GGTL4, RTDR1, GNAZ, RAB36, BCR, FLJ31568, LOC388882, IGLL1, LOC51233, Rgr, ZNF70, VPREB3, C22orf15, C22orf16, MMP11, SMARCB1, DERL3, SLC2A11, MIF, LOC653689, LOC100037417, DDT, GSTT2, GSTT1, CABIN1, SUSD2, GGTLA1, KIAA0376, ADORA2A, UPB1, C22orf13, SNRPD3, C22orf36, GGT1, PIWIL3, RUTBC2, bA9F11.1, CRYBB3, CRYBB2, LOC91353, LRP5L, ADRBK2, MYO18B, SEZ6L, ASPHD2, HPS4, LOC402055, TFIP11, TPST2, CRYBB1,

CRYBA4, MN1, PITPNB, CHEK2, HSC20, FLJ33814, XBP1, HS747E2A, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RRP22, AP1B1, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UCRC, ASCC2, MTMR3, LOC400924, HORMAD2, LIF

V_0235_LC20386_Iafrate et al. (2004), V_0688_LC20386_Sharp et al. (2005), V_0818_LC20342_Sharp et al. (2005), V_0819_LC20395_Sharp et al. (2005), V_2029_LC20395_Urban et al (2006), V_2030_LC20342_Urban et al (2006), V_2031_LC20342_Urban et al (2006), V_2032_LC20386_Urban et al (2006), V_2033_LC20386_Urban et al (2006), V_2034_LC20342_Urban et al (2006), V_2035_LC20386_Urban et al (2006), V_2036_LC20386_Urban et al (2006),

V_2264_LC20342_Locke et al. (2006), V_2265_LC20342_Locke et al. (2006), V_2266_LC20342_Locke et al. (2006), V_2267_LC20342_Locke et al. (2006), V_2268_LC20342_Locke et al. (2006), V_2269_LC20395_Locke et al. (2006), V_2270_LC20395_Locke et al. (2006), V_2271_LC20395_Locke et al. (2006), V_2272_LC20395_Locke et al. (2006), V_2273_LC20404_Locke et al. (2006), V_5174_LC20342_Wong et al. (2007), V_5175_LC20342_Wong et al. (2007), V_5176_LC20342_Wong et al. (2007), V_5177_LC20342_Wong et al. (2007), V_5178_LC20342_Wong et al. (2007), V_5179_LC20381_Wong et al. (2007),

V_5180_LC20386_Wong et al. (2007) q11.22-q12.222 44415498 44662653 RP11-192I8 RP11-435J19 3 0.247155 0.550101191 ATXN10 q13.31


1 1622658 6743912 RP11-730K14 RP11-565J1 48 5.121254 -0.909173882CDC2L1, CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, LOC339457, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, ACTRT2, PRDM16, ARHGEF16, MEGF6, FAM79A, WDR8,

TP73, KIAA0495, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11

V_0002_LC0028_Iafrate et al. (2004), V_2042_LC0028_Locke et al. (2006), V_4192_LC0040_Wong et al. (2007), V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007), V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007),

V_4202_LC0106_Wong et al. (2007) p36.33-p36.31

1 12614231 21068788 RP11-675L6 RP11-293H1 81 8.454557 -0.631978266

LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10, PRAMEF3, PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2, KIAA1026, FLJ43806, TMEM51, EFHD2, CTRC, ELA2A, ELA2B, CASP9, DNAJC16, AGMAT, DDI2, RSC1A1, SLC25A34, LOC388595, FBLIM1, SPEN, ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, C1orf117, EPHA2, ARHGEF19, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2, NBPF1, LOC440570, CROCC,

MFAP2, ATP13A2, SDHB, PADI2, PADI1, PADI3, PADI4, PADI6, RCC2, ARHGEF10L, ACTL8, IGSF21, KLHDC7A, PAX7, TAS1R2, ALDH4A1, ZUBR1, KIAA0090, MRT4, AFAR3, AKR7A3, AKR7A2, PQLC2, CAPZB, C1orf151, NBL1, HTR6, TMCO4, RNF186, PLA2G2E, PLA2G2A, PLA2G5, PLA2G2D, PLA2G2F, UBXD3, FLJ32784, CAMK2N1, C1orf166, FAM43B, CDA, PINK1, DDOST, KIF17, HP1BP3, EIF4G3

V_0004_LC0152_Iafrate et al. (2004), V_0005_LC0177_Iafrate et al. (2004), V_0677_LC0152_Sharp et al. (2005), V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_4206_LC0165_Wong et al. (2007), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007), V_4209_LC0177_Wong et al. (2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al. (2007),


1 21722520 23046616 RP11-598N19 RP11-695I8 12 1.324096 -0.456716424 ALPL, RAP1GA1, USP48, LDLRAD2, HSPG2, ELA3B, ELA3A, CDC42, WNT4, ZBTB40, EPHA8, C1QA, C1QC, C1QB, EPHB2V_2045_LC0219_Locke et al. (2006), V_2046_LC0230_Locke et al. (2006), V_4214_LC0213_Wong et al. (2007), V_4215_LC0219_Wong et al. (2007),

V_4216_LC0219_Wong et al. (2007) p36.12

1 24757276 36841646 CTD-2215B3 RP11-593A21 126 12.08437 -0.533262906

C1orf130, SRRM1, CLIC4, RUNX3, SYF2, C1orf63, RHD, TMEM50A, RHCE, TMEM57, LDLRAP1, MAN1C1, SEPN1, FAM54B, C1orf135, PAQR7, FLJ32206, STMN1, PAFAH2, EXTL1, SLC30A2, TRIM63, PDIK1L, GRRP1, ZNF593, CNKSR1, CATSPER4, CCDC21, SH3BGRL3, UBXD5, CD52, FLJ38020, AIM1L, ZNF683, LIN28, DHDDS, HMGN2, RPS6KA1, ARID1A, PIGV, ZDHHC18, SFN, ATPBD1B, GPATC3, NR0B2, NUDC, C1orf172, LOC388610, FAM46B, SLC9A1, WDTC1, C1orf160, SYTL1, MAP3K6,

FCN3, CD164L2, GPR3, WASF2, AHDC1, FGR, IFI6, FAM76A, STX12, PPP1R8, C1orf38, RPA2, SMPDL3B, XKR8, EYA3, PTAFR, DNAJC8, ATPIF1, SESN2, MED18, PHACTR4, SNHG3-RCC1, RCC1, TRSPAP1, RAB42, TAF12, GMEB1, YTHDF2, OPRD1, EPB41, TTMB, SFRS4, MECR, PTPRU, MATN1, LAPTM5, SDC3, PUM1, FAM77C, WDR57, ZCCHC17, FABP3, SERINC2, TINAGL1, HCRTR1, PEF1, COL16A1, BAI2, SPOCD1, PTP4A2, KHDRBS1, TMEM39B, KPNA6, TXLNA, CCDC28B, IQCC, C1orf91, EIF3S2, C1orf90, LCK, HDAC1, MARCKSL1, TSSK3, BSDC1, ZBTB8, ZBTB8OS, RBBP4, SYNC1, KIAA1522, YARS, S100PBP, FNDC5, HPCA, TMEM54, IBRDC3, AK2, ADC, TRIM62, FLJ25476, A3GALT2, PHC2, ZNF31, CSMD2, HMGB4, C1orf94, GJB5,

GJB4, GJB3, GJA4, C1orf212, DLGAP3, ZMYM6, ZMYM1, SFPQ, ZMYM4, KIAA0319L, NCDN, TFAP2E, PSMB2, FLJ38984, CLSP V_0680_LC0248_Sharp et al. (2005), V_2047_LC0248_Locke et al. (2006), V_4217_LC0248_Wong et al. (2007), V_4218_LC0253_Wong et al. (2007) p36.11-p34.3

1 43367715 46134783 RP11-113C10 RP11-743A18 25 2.767068 -0.273167393EBNA1BP2, WDR65, TMEM125, MGC52423, TIE1, MPL, CDC20, ELOVL1, MED8, C1orf84, KIAA0467, HYI, PTPRF, JMJD2A, ST3GAL3, ARTN, IPO13, DPH2, ATP6V0B, B4GALT2, CCDC24, SLC6A9, KLF17, DMAP1, PRNPIP, C1orf164, TMEM53,

MGC33556, KIF2C, RPS8, BEST4, PLK3, LOC343521, PTCH2, EIF2B3, HECTD3, UROD, GLOXD1, MUTYH, TOE1, TESK2, MMACHC, PRDX1, AKR1A1, NASP, CCDC17, GPBP1L1, TMEM69, IPP, MAST2 V_4220_LC0334_Wong et al. (2007), V_4221_LC0339_Wong et al. (2007), V_4222_LC0349_Wong et al. (2007) p34.2-p34.11 47418256 48247509 RP11-332M15 RP11-39A2 12 0.829253 -0.637118019 PDZK1IP1, TAL1, STIL, CMPK, FOXE3, FOXD2 p33

1 53051945 55351690 RP11-712H4 RP11-627J9 25 2.299745 -0.437247108ZYG11B, ECHDC2, SCP2, PODN, SLC1A7, CPT2, C1orf123, MAGOH, LRP8, DMRTB1, GLIS1, TMEM48, YIPF1, DIO1, C1orf41, LRRC42, LDLRAD1, TMEM59, C1orf83, CDCP2, LOC606495, MRPL37, SSBP3, ACOT11, C1orf179, C1orf175, TTC4, PARS2,

TTC22, C1orf177, DHCR24, TMEM61, BSND, PCSK9 V_4225_LC0378_Wong et al. (2007) p32.31 153090466 153541655 RP11-624P9 RP11-263K19 3 0.451189 -0.2190306 KCNN3, PMVK, PBXIP1, PYGO2, SHC1, CKS1B, FLAD1, LENEP, ZBTB7B, DCST2, DCST1, ADAM15, EFNA4, EFNA3, EFNA1, RAG1AP1, DPM3, KRTCAP2, TRIM46, MUC1, THBS3, MTX1, GBA, C1orf2, SCAMP3, CLK2, HCN3, PKLR V_4257_LC0831_Wong et al. (2007) q21.3-q22

1 153985678 155533386 RP11-62I13 RP11-77D16 15 1.547708 -0.267264065GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, SSR2, UBQLN4, MAPBPIP, RAB25, LMNA, SEMA4A, KIAA0446, PMF1, BGLAP, PAQR6, SMG5, TMEM79, C1orf85, VHLL, CCT3, C1orf182, RHBG, C1orf61, MEF2D, IQGAP3, APOA1BP, GPATC4,

HAPLN2, BCAN, NES, CRABP2, ISG20L2, C1orf66, MRPL24, HDGF, PRCC, SH2D2A, INSRR, NTRK1, PEAR1, C1orf92, ARHGEF11, FLJ16478, ETV3 q22-q23.1

2 216927309 239250376 RP11-42I14 RP11-651I14 243 22.323067 -0.884821677

SMARCAL1, RPL37A, IGFBP2, IGFBP5, TNP1, TNS1, FLJ46536, IL8RB, IL8RA, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MGC50811, SLC11A1, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, WNT10A, CDK5R2, FEV, CRYBA2, DKFZp434O052, IHH, XLF, SLC23A3, C2orf24, C2orf17, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA1, DNAJB2, PTPRN, RESP18, DNPEP, DES, GMPPA, ACCN4, CHPF, MGC99813, OBSL1, INHA,

STK11IP, SLC4A3, EPHA4, PAX3, FLJ32447, SGPP2, FARSLB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FLJ22746, CUL3, DOCK10, IRS1, RHBDD1, COL4A4, COL4A3, C2orf33, TM4SF20, HRB, DKFZp547H025, SLC19A3, CCL20, WDR69, FLJ20701, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, LOC93349, SP100, CAB39, ITM2C, GPR55, PSMD1, HTR2B, ARMC9, B3GNT7, NCL, MGC43122, NMUR1, MGC35154, PTMA, PDE6D, COPS7B, NPPC, DIS3L2, ALPP, ALPPL2, ALPI, ECEL1, CHRND, CHRNG, TIGD1, EIF4E2, EFHD1, TNRC15, KCNJ13, UNQ830, NGEF, NEU2, INPP5D, ATG16L1, SAG, DGKD, USP40, UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, UGT1A5, UGT1A4, UGT1A3, HCG3, UGT1A1,

DKFZp762E131, TRPM8, SPP2, ARL4C, SH3BP4, CENTG2, GBX2, ASB18, IQCA, CMKOR1, COPS8, COL6A3, MLPH, PRLH, RA V_0030_LC2686_Iafrate et al. (2004), V_4328_LC2702_Wong et al. (2007), V_4329_LC2749_Wong et al. (2007) q35-q37.3

Gains

Losses

OVISE

2 241063271 241392414 RP11-27M15 CTD-2036A16 3 0.329143 -0.326348889 ANKMY1, LOC285193, RNPEPL1, CAPN10, GPR35, AQP12A, KIF1A q37.32 241768610 242750818 RP11-31D1 RP11-1159G17 8 0.982208 -0.474664742 PPP1R7, TMEM16G, HDLBP, FARP2, STK25, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, FLJ33590 V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4331_LC2814_Wong et al. (2007) q37.3

4 39105 5873444 RP11-335H3 RP11-119J9 63 5.834339 -0.805462161

ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, TETRAN, C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, D4S234E,

STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1 V_2066_LC4068_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) p16.3-p16.1

4 6423798 17861122 RP11-270L11 RP11-468A23 98 11.437324 -1.005157277PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131, LOC650293, DRD5, SLC2A9, WDR1,

KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL

V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_Wong et al. (2007),

V_4379_LC4291_Wong et al. (2007) p16.1-p15.324 20008258 26236765 RP11-12E5 RP11-711P17 54 6.228507 -0.545110466 SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19 V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007) p15.31-p15.2

4 36458182 43459874 RP11-774L17 RP11-16I14 70 7.001692 -0.5973792FLJ11017, RELL1, PGM2, TBC1D1, PTTG2, KLF3, TLR10, TLR1, TLR6, LOC92689, FLJ23235, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS, UGDH, LOC201895, HIP2, SCC-112, N4BP2, RHOH, CHRNA9, FLJ20273, FLJ14001, APBB2, UCHL1, DKFZP686A012,

PHOX2B, TMEM33, WDR21B, SLC30A9, CCDC4, LOC152573, ATP8A1, LOC389207 V_4389_LC4569_Wong et al. (2007), V_4390_LC4615_Wong et al. (2007), V_4391_LC4626_Wong et al. (2007) p14-p134 53175517 55497372 RP11-177B4 RP11-273B19 20 2.321855 -0.69700756 USP46, FLJ12684, RASL11B, SCFD2, FIP1L1, LNX1, LOC402176, CHIC2, GSH2, PDGFRA, KIT q124 140693364 141970677 RP11-90M18 RP11-108L13 10 1.277313 -0.538629479 SETD7, MGST2, MAML3, SCOC, CLGN, ELMOD2, UCP1, TBC1D9 V_4418_LC5696_Wong et al. (2007) q31.1-q31.214 152158287 155419050 RP11-1150B15 RP11-9N12 26 3.260763 -0.589163392 RPS3A, SH3D19, ESSPL, PET112L, FBXW7, FLJ32028, TIGD4, ARFIP1, KIAA1727, TRIM2, MND1, KIAA0922, TLR2, RNF175, SFRP2, DCHS2 V_0051_LC5838_Iafrate et al. (2004) q31.3-q32.14 180681530 181111147 RP11-25A13 RP11-493B2 4 0.429617 -0.478281115 V_4422_LC6154_Wong et al. (2007) q34.3

4 181300948 191137774 RP11-240M1 CTD-2011O21 97 9.836826 -1.209497966ODZ3, DCTD, FLJ30277, WWC2, CDKN2AIP, ING2, RWDD4A, FLJ12716, STOX2, ENPP6, IRF2, CASP3, FLJ33167, MLF1IP, ACSL1, HELT, SLC25A4, SNX25, LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2, TLR3, DKFZP564J102, CYP4V2,

KLKB1, F11, MTNR1A, FAT, ZFP42, FLJ25801, FLJ36180, FRG1V_0057_LC6244_Iafrate et al. (2004), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_4423_LC6218_Wong et al. (2007),


5 72312 11908939 RP11-811I15 RP11-408F7 110 11.836627 -0.644793408KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4, IRX2, CEI, IRX1, ADAMTS16,

FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2

V_0704_LC6379_Sharp et al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_2082_LC6572_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong et al. (2007),

V_4428_LC6379_Wong et al. (2007), V_4429_LC6379_Wong et al. (2007), V_4430_LC6506_Wong et al. (2007) p15.33-p15.25 14056885 17281632 RP11-744A15 RP11-553J15 39 3.224747 -0.413344197 TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10, BASP1 p15.2-p15.15 19355389 20682262 RP11-125H10 RP11-527C4 12 1.326873 -0.310131411 CDH18 V_0708_LC6659_Sharp et al. (2005), V_4433_LC6655_Wong et al. (2007), V_4434_LC6659_Wong et al. (2007) p14.3

6 64779 8248981 RP13-486F12 RP11-328K6 71 8.184202 -0.635643748FLJ43763, DUSP22, IRF4, EXOC2, HUS1B, FOXQ1, FOXF2, FOXC1, GMDS, C6orf195, LOC340156, WRNIP1, SERPINB1, SERPINB9, SERPINB6, DKFZp686I152, NQO2, LOC401233, RIPK1, BPHL, TUBB2A, TUBB2B, C6orf85, C6orf145, FAM50B, PRPF4B,

C6orf146, C6orf201, PECI, CDYL, RPP40, C6orf149, FARS2, NRN1, F13A1, LY86, RREB1, SSR1, CAGE1, RIOK1, DSP, C6orf151, BMP6, TXNDC5, MUTED, EEF1E1V_0070_LC7931_Iafrate et al. (2004), V_0071_LC7931_Iafrate et al. (2004), V_0072_LC7984_Iafrate et al. (2004), V_4483_LC7931_Wong et al. (2007),

V_4484_LC7948_Wong et al. (2007), V_4485_LC7995_Wong et al. (2007), V_0374_LC7931_Bejjani et al. (2005) p25.3-p24.36 9840384 12288224 RP11-211P3 RP11-38N11 25 2.44784 -0.380839079 OFCC1, TFAP2A, MGC40222, GCNT2, PAK1IP1, TMEM14C, TMEM14B, MAK, GCM2, LOC221711, ELOVL2, HERV-FRD, NEDD9, C6orf105, HIVEP1 p24.3-p24.16 12700864 15352169 RP11-735H4 RP11-307E16 31 2.651305 -0.355156472 PHACTR1, TBC1D7, GFOD1, C6orf114, SIRT5, NOL7, RANBP9, C6orf79, RNF182, CD83 p24.1-p23

6 28969646 31823219 RP11-13M23 RP11-689A13 32 2.853573 -0.497127826

TRIM27, ZNF311, OR2W1, OR2B3, LOC651503, OR5U1, OR5V1, OR12D3, OR12D2, OR11A1, OR10C1, OR2H1, MAS1L, OR2H2, GABBR1, MOG, HLA-F, HLA-G, HLA-A, HCG9, ZNRD1, PPP1R11, RNF39, TRIM31, TRIM40, TRIM15, TRIM26, FLJ45422, TRIM39, RPP21, HLA-E, GNL1, PRR3, ABCF1, PPP1R10, MRPS18B, C6orf134, C6orf136, DHX16, KIAA1949, NRM, MDC1, TUBB, FLOT1, IER3, DDR1, GTF2H4, VARSL, SFTPG, DPCR1, C6orf205, C6orf15, PSORS1C1, CDSN, CCHCR1, TCF19, POU5F1,

HCG27, HLA-C, HLA-B, HCP5, MICB, BAT1, ATP6V1G2, NFKBIL1, LTA, TNF, LTB, LST1, NCR3, AIF1, BAT2, BAT3, APOM, C6orf47, BAT4, CSNK2B, LY6G5B, LY6G5C, BAT5, C6orf21, LY6G6D, C6orf25, DDAH2, CLIC1, MSH5 V_4669_LC8166_Wong et al. (2007) p22.1-p21.33

6 32817652 44317825 RP11-631D16 RP11-400E17 124 11.500173 -0.462062206

HLA-DQA2, HLA-DOB, TAP2, PSMB8, TAP1, PSMB9, HLA-DMB, HLA-DMA, BRD2, HLA-DOA, HLA-DPA1, HLA-DPB1, COL11A2, RXRB, SLC39A7, HSD17B8, RING1, VPS52, RPS18, B3GALT4, WDR46, PFDN6, RGL2, TAPBP, ZNF297, DAXX, KIFC1, CICK0721Q.1, PHF1, CUTA, SYNGAP1, ZBTB9, BAK1, FLJ43752, ITPR3, C6orf125, IHPK3, LEMD2, MLN, GRM4, HMGA1, C6orf1, NUDT3, RPS10, PACSIN1, SPDEF, C6orf106, SNRPC, C6orf107, TAF11, ANKS1A, TCP11, SCUBE3, ZNF76, DEF6, PPARD, FANCE, RPL10A, TEAD3, TULP1, FKBP5, C6orf81, UNQ3045, LOC340204, CLPS, LHFPL5, SRPK1, SLC26A8, MAPK14, MAPK13, BRPF3, PNPLA1, DKFZp779B154, ETV7, PXT1, C6orf69, STK38, SFRS3, CDKN1A, FLJ43093, CPNE5, PPIL1, C6orf89, PI16,

MTCH1, FGD2, PIM1, C6orf128, TBC1D22B, RNF8, KIAA0082, C6orf129, MDGA1, ZFAND3, BTBD9, GLO1, DNAH8, GLP1R, C6orf64, KCNK5, KCNK17, KCNK16, KIF6, DAAM2, MOCS1, FLJ41649, LRFN2, UNC5CL, BZRPL1, APOBEC2, C6orf130, NFYA, TREML1, TREM2, TREML2, TREML4, TREM1, NCR2, FOXP4, MDFI, TFEB, PGC, FRS3, C6orf49, USP49, TRFP, BYSL, CCND3, TBN, GUCA1A, GUCA1B, MRPS10, TRERF1, UBR2, PRPH2, TBCC, KIAA0240, RPL7L1, LOC441150, PTCRA, TNRC5, GNMT,

PEX6, PPP2R5D, MEA1, KLHDC3, C6orf153, CUL7, MRPL2, KLC4, PTK7, SRF, PARC, C6orf108, TTBK1, SLC22A7, CRIP3, ZNF3 V_0076_LC8230_Iafrate et al. (2004), V_0077_LC8268_Iafrate et al. (2004) p21.32-p21.16 44475740 44971923 RP11-323A9 RP11-124I20 4 0.496183 -0.448073413 CDC5L, SUPT3H p21.16 163778200 164775943 RP11-788I6 RP11-347L18 10 0.997743 -0.571855928 QKI V_4516_LC9028_Wong et al. (2007) q26-q27

6 165232187 170851849 RP11-637D24 RP11-113J6 49 5.619662 -0.815788539C6orf118, PDE10A, LOC441177, T, MGC35308, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31, UNC93A, TTLL2, TCP10, LOC401286, LOC653483, MLLT4, KIF25, FRMD1, DACT2, SMOC2, THBS2, WDR27, C6orf120, PHF10, TCTE3,

C6orf70, C6orf122, C6orf208, DLL1, KIAA1838, PSMB1, TBP, PDCD2 V_2098_LC9057_Locke et al. (2006), V_4518_LC9057_Wong et al. (2007) q27

7 64729252 74293398 RP11-479O9 RP11-567F24 121 9.564146 -0.874083814VKORC1L1, GUSB, ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2,

MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2BV_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007),


7 97314220 102274432 RP11-380G21 RP11-694M1 47 4.960212 -0.453949686

ASNS, LOC441268, OCM, LMTK2, BHLHB8, DKFZP434B033, BRI3, BAIAP2L1, NPTX2, TMEM130, TRRAP, SMURF1, ARPC1A, ARPC1B, PDAP1, BUD31, PTCD1, CPSF4, ATP5J2, LOC285989, ZNF394, ZKSCAN5, DKFZp727G131, ZNF655, ZNF498, CYP3A5, CYP3A7, CYP3A4, CYP3A43, OR2AE1, TRIM4, GJE1, AZGP1, ZKSCAN1, ZNF38, ZNF3, COPS6, MCM7, AP4M1, TAF6, MGC40499, LOC255374, LOC389541, FLJ10925, GAL3ST4, GPC2, STAG3, GATS, MGC2463, MGC57359, PILRB, PILRA, ZCWPW1, BCDIN3, C7orf47, LOC402573, TSC22D4, FLJ37538, HRBL, LRCH4, FBXO24, PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, PERQ1, POP7, EPO, ZAN, EPHB4, SLC12A9, TRIP6, ARS2, LOC402682, ACHE, MUC17, TRIM56, SERPINE1, AP1S1,

VGF, FLJ39237, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYLC2PL, CUTL1, SH2B2, PRKRIP1, C7orf19, ALKBH4, DKFZp434K181, POLR2J, MGC119295, POLR2J3, RASA4, POLR2J2, MGC35361, FBXL13

V_0107_LC9766_Iafrate et al. (2004), V_0724_LC9769_Sharp et al. (2005), V_2104_LC9753_Locke et al. (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_4547_LC9750_Wong et al. (2007), V_4548_LC9750_Wong et al. (2007), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_4551_LC9756_Wong et al. (2007), V_4552_LC9762_Wong et al. (2007), V_4553_LC9769_Wong et al. (2007) q21.3-q22.1

7 131124785 131981468 RP11-193I17 RP11-540B11 7 0.856683 -0.539316842 PLXNA4B V_4561_LC9937_Wong et al. (2007) q32.37 138828068 140073345 RP13-912P9 RP11-788O6 13 1.245277 -0.386944953 CLEC2L, HIPK2, TBXAS1, PARP12, KIAA1718, SLC37A3, RAB19B, MKRN1, DENND2A, ADCK2, NDUFB2 q347 142124898 142956394 RP11-114L10 RP11-119F21 8 0.831496 -0.572304569 PRSS1, PRSS2, EPHB6, TRPV6, TRPV5, C7orf34, KEL, OR9A2, OR6V1, PIP, TAS2R39, TAS2R40, GSTK1, TMEM139, CASP2, CLCN1, KIAA0773, FAM131B, ZYX, EPHA1, TAS2R60, TAS2R41 V_4566_LC10013_Wong et al. (2007), V_4567_LC10013_Wong et al. (2007), V_4568_LC10016_Wong et al. (2007), V_4569_LC10016_Wong et al. (2007) q34-q357 147385243 147917733 RP11-79K23 RP11-765I1 4 0.53249 -0.370081312 CNTNAP2 q35-q36.1

7 149055768 151285794 RP11-263O17 RP11-381K9 21 2.230026 -0.608089137KRBA1, ZNF467, SSPO, LOC401431, ATP6V0E2L, LRRC61, C7orf29, RARRES2, REPIN1, ZNF775, LOC728743, GIMAP8, GIMAP7, GIMAP4, GIMAP6, GIMAP2, GIMAP1, GIMAP5, LR8, HCA112, ABP1, KCNH2, NOS3, ATG9B, ABCB8, ACCN3, CDK5,

SLC4A2, FASTK, C7orf21, CENTG3, ASB10, ABCF2, CSGlcA-T, SMARCD3, NYREN18, LOC349136, CRYGN, RHEB, PRKAG2, GALNTL5 V_0727_LC10049_Sharp et al. (2005), V_0728_LC10049_Sharp et al. (2005), V_4574_LC10061_Wong et al. (2007) q36.17 152147266 155128400 RP11-1137J16 RP11-265E13 37 2.981134 -0.475120504 ACTR3B, FLJ16734, DPP6, PAXIP1, HTR5A, INSIG1, EN2 V_0111_LC10099_Iafrate et al. (2004), V_0729_LC10082_Sharp et al. (2005), V_0730_LC10082_Sharp et al. (2005), V_2111_LC10082_Locke et al. (2006) q36.1-q36.37 157297102 158059227 RP11-452C13 RP13-613J3 10 0.762125 -0.596539288 PTPRN2 q36.3

8 29004 13216446 RP11-130K11 RP11-261C5 117 13.187442 -0.810012657

OR4F21, ZNF596, FBXO25, C8orf42, LOC389607, ERICH1, DLGAP2, CLN8, C8orf61, ARHGEF10, KBTBD11, MYOM2, CSMD1, MCPH1, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, LOC653600, DEFA3, DEFA5, PJCG6, DEFB104A, DEFB104B, DEFB107A, DEFB107B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, SPAG11, SPAG11A, DEFB103B, DEFB103A, DEFB4, DEFB109, CLDN23, MFHAS1, THEX1, PPP1R3B, TNKS, MSRA, UNQ9391, RP1L1, C8orf74, SOX7, PINX1, XKR6,

C8orf15, MTMR9, AMAC1L2, C8orf13, BLK, GATA4, C8orf49, NEIL2, FDFT1, CTSB, DEFB137, DEFB136, DEFB134, DUB3, FAM86B1, DEFB130, LOC440053, LONRF1, C8orf79, KIAA1456, DLC1

V_0731_LC10225_Sharp et al. (2005), V_0732_LC10225_Sharp et al. (2005), V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp et al. (2005), V_0739_LC10380_Sharp et al. (2005), V_0740_LC10408_Sharp et al. (2005), V_2112_LC10225_Locke et al. (2006), V_2113_LC10225_Locke et al. (2006), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006), V_2116_LC10380_Locke et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_4276_LC10225_Wong et al. (2007), V_4575_LC10225_Wong et al. (2007), V_4576_LC10225_Wong et al. (2007), V_4577_LC10380_Wong et al. (2007), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007), V_4581_LC10380_Wong et al. (2007),

V_4582_LC10408_Wong et al. (2007), V_4583_LC10408_Wong et al. (2007), V_4584_LC10408_Wong et al. (2007) p23.3-p22

8 18229218 39070960 RP11-422K2 CTD-2544N14 177 20.841742 -0.683923002

NAT2, PSD3, SH2D4A, ChGn, INTS10, LPL, SLC18A1, ATP6V1B2, LZTS1, GFRA2, DOK2, XPO7, NPM2, FGF17, EPB49, RAI16, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2, SLC39A14, PPP3CC, SORBS3, PDLIM2, C8orf58, KIAA1967, BIN3, EGR3, PEBP4, RHOBTB2, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF10A, CHMP7, LOXL2, ENTPD4, SLC25A37, NKX3-1, STC1, ADAM28, ADAMDEC1, ADAM7, NEF3, NEFL, DOCK5, GNRH1, KCTD9, CDCA2, EBF2, PPP2R2A, BNIP3L, PNMA2, DPYSL2, ADRA1A, STMN4, TRIM35, PTK2B, CHRNA2, EPHX2, CLU, SCARA3, CCDC25, ESCO2, PBK, SCARA5, ELP3, PNOC, ZNF395, FBXO16, FZD3, EXTL3, RC74, HMBOX1, KIF13B, DUSP4, TMEM66, LEPROTL1, DCTN6, RBPMS,

GTF2E2, GSR, UBXD6, PPP2CB, TEX15, PURG, WRN, NRG1, FUT10, RBM13, C8orf41, RNF122, DUSP26, UNC5D, FKSG2, ZNF703, SPFH2, PROSC, GPR124, BRF2, RAB11FIP1, GOT1L1, ADRB3, EIF4EBP1, ASH2L, STAR, LSM1, BAG4, DDHD2, PPAPDC1B, WHSC1L1, LETM2, FGFR1, FLJ43582, TACC1, HTRA4, TM2D2, ADAM9

V_2123_LC10460_Locke et al. (2006), V_2124_LC10461_Locke et al. (2006), V_2125_LC10461_Locke et al. (2006), V_4586_LC10461_Wong et al. (2007), V_4588_LC10475_Wong et al. (2007), V_4589_LC10531_Wong et al. (2007) p22-p11.23

8 40620820 40949362 RP11-749P1 RP11-167P2 4 0.328542 -0.571067608 ZMAT4 p11.21

9 9707474 39067744 RP11-6H18 RP11-475B17 277 29.36027 -0.894923509

PTPRD, TYRP1, C9orf150, MPDZ, NFIB, ZDHHC21, CER1, FREM1, C9orf52, SNAPC3, PSIP1, C9orf93, BNC2, LOC648570, C9orf39, SH3GL2, ADAMTSL1, C9orf94, C9orf138, RRAGA, FAM29A, ADFP, DENND4C, RPS6, ASAH3L, SLC24A2, MLLT3, KIAA1797, PTPLAD2, IFNB1, IFNW1, IFNA21, IFNA4, IFNA14, IFNA7, IFNA10, IFNA16, IFNA17, IFNA5, KLHL9, IFNA6, IFNA13, IFNA2, IFNA8, IFNA1, IFNE1, MTAP, CDKN2A, CDKN2B, DMRTA1, ELAVL2, TUSC1, C9orf82, PLAA, IFT74, LRRC19, TEK,

C9orf11, MOBKL2B, IFNK, C9orf72, LRRN6C, ACO1, DDX58, TOPORS, NDUFB6, TAF1L, LOC401498, APTX, DNAJA1, SMU1, B4GALT1, SPINK4, BAG1, CHMP5, NFX1, AQP7, AQP3, NOL6, PRSS3, UBE2R2, UBAP2, WDR40A, UBAP1, C9orf48, NUDT2, KIAA1161, C9orf24, C9orf25, DNAI1, UNQ470, CNTFR, C9orf23, DCTN3, ARID3C, OPRS1, GALT, IL11RA, CCL27, CCL19, CCL21, DNAJB5, MGC41945, VCP, FANCG, PIGO, STOML2, KIAA1539, UNC13B, FLJ46309, LOC158381, RUSC2, TESK1, CD72, SIT1, MGC31967, C9orf100, CA9, TPM2, TLN1, CREB3, GBA2, KIAA0258, PC-3, NPR2, SPAG8, HINT2, C9orf128, C9orf127, OR13J1, LOC646962, OR2S2, RECK, C9orf19, CCIN, CLTA, GNE, RNF38, MELK, PAX5, ZCCHC7, GRHPR, ZBTB5, POLR1E,

V_0127_LC11147_Iafrate et al. (2004), V_0128_LC11164_Iafrate et al. (2004), V_0741_LC11289_Sharp et al. (2005), V_2127_LC11326_Locke et al. (2006), V_4615_LC11143_Wong et al. (2007), V_4616_LC11224_Wong et al. (2007), V_4617_LC11257_Wong et al. (2007), V_4618_LC11302_Wong et al. (2007) p23-p13.1

9 45907482 46096928 CTD-2023G20 RP13-514P24 3 0.189446 -0.442042737V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006),

V_4633_LC11330_Wong et al. (2007), V_4634_LC11330_Wong et al. (2007), V_4635_LC11330_Wong et al. (2007) p11.210 63259 336911 RP11-631M21 RP11-383L17 3 0.273652 -0.411420456 TUBB8, ZMYND11, DIP2C p15.310 3634505 6683438 RP11-593B1 RP11-453H2 22 3.048933 -0.505220378 KLF6, AKR1CL2, AKR1C1, AKR1C2, AKR1C3, AKR1CL1, AKR1C4, UCN3, TUBAL3, NET1, CALML5, CALML3, ASB13, GDI2, ANKRD16, FBXO18, IL15RA, IL2RA, RBM17, PFKFB3, PRKCQ p15.2-p15.1

10 8848500 31516755 RP11-761H2 RP11-125C10 218 22.668255 -0.61258786

LOC389936, CUGBP2, USP6NL, ECHDC3, C10orf47, UPF2, DHTKD1, SEC61A2, NUDT5, C10orf7, CAMK1D, CCDC3, OPTN, MCM10, C10orf49, PHYH, SEPHS1, C10orf30, PRPF18, FRMD4A, FAM107B, ARMETL1, HSPA14, SUV39H2, DCLRE1C, MEIG1, THEDC1, ACBD7, C10orf111, RPP38, NMT2, C10orf38, ITGA8, C10orf97, PTER, C1QL3, RSU1, CUBN, DNMT2, VIM, ST8SIA6, PTPLA, STAM, LOC340843, MRC1, MRC1L1, SLC39A12, CACNB2, NSUN6, ARL5B, PLXDC2, NEBL, C10orf113, C10orf114,

FLJ45187, MLLT10, DNAJC1, COMMD3, PCGF4, SPAG6, PIP5K2A, ARMC3, MSRB2, PTF1A, C10orf67, KIAA1217, ARHGAP21, PRTFDC1, C10orf63, THNSL1, GPR158, MYO3A, GAD2, APBB1IP, PDSS1, ABI1, ANKRD26, YME1L1, MASTL, ACBD5, LOC387646, PTCHD3, RAB18, IRXL1, ARMC4, MPP7, WAC, BAMBI, LYZL1, SVIL, PAPD1, MAP3K8, LYZL2, ZNF438


V_4674_LC12215_Wong et al. (2007) p14-p11.2210 71221203 73645700 RP11-812A17 RP11-135C15 23 2.424497 -0.351013165 COL13A1, H2AFY2, AMID, TYSND1, SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, NODAL, KIAA1274, PRF1, ADAMTS14, C10orf27, SGPL1, PCBD1, UNC5B, SLC29A3, CDH23, C10orf54, PSAP, CHST3, SPOCK2, ASCC1 q21.3-q22.1

10 78721811 82580958 RP11-153F2 RP11-731E24 33 3.859147 -0.409917129 KCNMA1, DLG5, POLR3A, RPS24, RAI17, PPIF, C10orf56, SFTPA2, SFTPA1, SFTPD, C10orf57, PLAC9, ANXA11, MAT1A, DYDC1, DYDC2, C10orf58, TSPAN14, SH2D4BV_0762_LC12488_Sharp et al. (2005), V_0765_LC12481_Sharp et al. (2005), V_2157_LC12477_Locke et al. (2006), V_2158_LC12478_Locke et al. (2006), V_2159_LC12481_Locke et al. (2006), V_2160_LC12485_Locke et al. (2006), V_2161_LC12488_Locke et al. (2006), V_4704_LC12478_Wong et al. (2007) q22.3-q23.1

10 98988334 100341805 RP11-786K15 RP11-707M8 12 1.353471 -0.372276758 ARHGAP19, FRAT1, FRAT2, KIAA0690, PGAM1, EXOSC1, ZDHHC16, MMS19L, UBTD1, ANKRD2, C10orf65, C10orf62, C10orf83, PI4KII, AVPI1, ZFYVE27, SFRP5, C10orf132, CRTAC1, C10orf28, LOXL4, C10orf33, HPS1, HPSE2 V_4709_LC12564_Wong et al. (2007), V_4710_LC12569_Wong et al. (2007) q24.1-q24.210 102156298 103037179 RP11-121I4 RP11-51A7 11 0.880881 -0.373128352 WNT8B, SEC31L2, NDUFB8, HIF1AN, PAX2, C10orf6, SEMA4G, MRPL43, PEO1, LZTS2, PDZD7, SFXN3, KAZALD1, TD1, TLX1, LBX1 V_4711_LC12583_Wong et al. (2007) q24.31-q24.3210 131500713 132569187 RP11-8K5 RP11-589O19 9 1.068474 -0.460111643 EBF3, TXNL2 V_4716_LC12779_Wong et al. (2007) q26.3

11 54923241 63004402 RP11-357M10 RP11-603J21 95 8.081161 -0.916229895

OR4C15, OR4C16, OR4C11, OR4P4, OR4S2, OR4C6, OR5D13, OR5D14, OR5L1, OR5D18, OR5L2, OR5D16, TRIM51, OR5W2, OR5I1, OR10AG1, OR5F1, OR5AS1, OR8I2, OR8H2, OR8H3, OR8J3, OR8K5, OR5J2, OR5T2, OR5T3, OR5T1, OR8H1, OR8K3, OR8K1, OR8J1, OR8U1, OR5R1, OR5M9, OR5M3, OR5M8, OR5M11, OR5M10, OR5M1, OR5AP2, OR5AR1, OR9G1, OR9G9, OR9G4, OR5AK2, LRRC55, AGTRL1, TNKS1BP1, SSRP1, P2RX3, PRG3, SLC43A3, RTN4RL2, SLC43A1, TIMM10, UBE2L6,

SERPING1, YPEL4, HEAB, ZDHHC5, MED19, TXNDC14, C11orf31, CTNND1, OR9Q1, OR6Q1, OR9I1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR10W1, OR5B17, OR5B3, OR5B2, OR5B12, OR5B21, LPXN, ZFP91, CNTF, GLYAT, GLYATL2, GLYATL1, FAM111B, FAM111A, MPEG1, OR5AN1, OR5A2, OR5A1, OR4D6, OR4D10, OR4D11, OR4D9, OSBP, FLJ36874, OR10V1, STX3A, MRPL16, GIF, TCN1, TMEM122, MS4A3, MS4A2, MS4A6A, MS4A4A, MS4A6E, MS4A7, NYD-SP21, MS4A5, MS4A1, MS4A12,MS4A13, MS4A8B, MGC35295, MS4A10, CCDC86, GPR44, ZP1, PRPF19, TMEM109, TMEM132A, SLC15A3, CD6, CD5, VPS37C, PGA3, PGA4, PGA5, VWCE, DDB1, DAK, CYBASC3, TMEM138, MGC13379, FLJ12529, FLJ20487, C11orf66, SYT7, C11orf11,

C11orf9, C11orf10, FEN1, FADS1, FADS2, FADS3, RAB3IL1, VMD2, FTH1, LOC399900, INCENP, SCGB1D1, SCGB2A1, SCGB1D

V_0148_LC13223_Iafrate et al. (2004), V_0149_LC13233_Iafrate et al. (2004), V_0150_LC13257_Iafrate et al. (2004), V_0768_LC13233_Sharp et al. (2005), V_2167_LC13212_Locke et al. (2006), V_2168_LC13233_Locke et al. (2006), V_4743_LC13212_Wong et al. (2007), V_4744_LC13225_Wong et al. (2007), V_4745_LC13231_Wong et al. (2007), V_4746_LC13237_Wong et al. (2007), V_4747_LC13245_Wong et al. (2007), V_4748_LC13245_Wong et al. (2007),

V_4749_LC13256_Wong et al. (2007) q11-q12.3

11 67001000 73404935 RP11-428E19 RP11-598G3 60 6.403935 -0.809167587

AIP, PITPNM1, CDK2AP2, CABP2, GSTP1, C11orf72, NDUFV1, NUDT8, TBX10, ACY3, ALDH3B2, UNC93B1, ALDH3B1, NDUFS8, TCIRG1, CHKA, SUV420H1, C11orf24, LRP5, SAPS3, GAL, MTL5, CPT1A, MRPL21, IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76, DHCR7, NADSYN1, KRTAP5-7, KRTAP5-8, KRTAP5-9, KRTAP5-10, KRTAP5-11, FAM86C, DEFB108B, RNF121, IL18BP, NUMA1, LRRC51,

C11orf59, C11orf51, FOLR3, FOLR1, FOLR2, INPPL1, PHOX2A, CLPB, PDE2A, CENTD2, STARD10, ATG16L2, FCHSD2, P2RY2, P2RY6, ARHGEF17, TNFRSF19L, KIAA0280, PLEKHB1, RAB6A, MRPL48, CHCHD8, WDR71, DNAJB13, UCP2, UCP3 V_2169_LC13288_Locke et al. (2006), V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) q13.1-q13.4

11 74623487 80694782 RP11-124A10 RP11-577A18 52 6.071295 -1.193190789ARRB1, RPS3, FLJ33790, GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG, WNT11, PRKRIR, C11orf30, LRRC32, LRRC54, PHCA, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1, AQP11, CLNS1A, HBXAP, PTD015, INTS4, KCTD14, THRSP,

NDUFC2, ALG8, LOC283219, GAB2, NARS2 V_0151_LC13373_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006), V_4727_LC13373_Wong et al. (2007) q13.4-q14.1

11 108541452 134436732 RP11-554C11 CTD-2220K2 240 25.89528 -0.89325609

LOC399947, RDX, FDX1, ARHGAP20, C11orf53, FLJ45803, POU2AF1, BTG4, FLJ46266, LAYN, SNF1LK2, PPP2R1B, ALG9, C11orf1, CRYAB, HSPB2, C11orf52, DIXDC1, DLAT, PIH1D2, C11orf57, TIMM8B, SDHD, IL18, TEX12, BCDO2, PTS, NCAM1, TTC12, ANKK1, DRD2, TMPRSS5, ZW10, USP28, HTR3B, HTR3A, ZBTB16, NNMT, C11orf71, RBM7, REXO2, FAM55A, FAM55D, FAM55B, IGSF4, BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, KIAA0999, PAFAH1B2, SIDT2, TAGLN, PCSK7,

DKFZp547C195, BACE1, CEP164, DSCAML1, FXYD2, FXYD6, TMPRSS13, IL10RA, TMPRSS4, SCN4B, SCN2B, AMICA1, LOC196264, EVA1, CD3E, CD3D, CD3G, UBE4A, ATP5L, MLL, FLJ11783, LOC143941, TMEM25, C11orf60, ARCN1, PHLDB1, TREH, DDX6, BLR1, BCL9L, UPK2, FOXR1, CCDC84, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX, DPAGT1, TMEM24, MIZF, ABCG4, NOD9, PDZD3, LOC283152, CBL, MCAM, RNF26, C1QTNF5, MFRP, USP2, THY1, PVRL1, TRIM29, OAF, POU2F3, TMEM136, ARHGEF12, GRIK4, LRRC35, TECTA, SC5DL, SORL1, BRCC2, STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8,

OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TV_0158_LC13592_Iafrate et al. (2004), V_0159_LC13605_Iafrate et al. (2004), V_4763_LC13589_Wong et al. (2007), V_4764_LC13705_Wong et al. (2007),

V_5037_LC13656_Wong et al. (2007) q22.3-q25

13 17918020 30929063 RP11-77P19 RP11-795F5 106 13.011043 -0.948007342

TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3, FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774,

SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1, B3GTL V_0167_LC14662_Iafrate et al. (2004), V_4797_LC14674_Wong et al. (2007), V_4899_LC14682_Wong et al. (2007) q11-q12.3

13 110632730 114117194 CTD-2017N1 RP11-228M6 20 3.484464 -1.161370204 ARHGEF7, MGC35169, SOX1, C13orf28, TUBGCP3, FLJ26443, ATP11A, MCF2L, F7, F10, PROZ, FLJ11305, CUL4A, LAMP1, GRTP1, ADPRHL1, DCUN1D2, TMCO3, TFDP1, ATP4B, GRK1, GAS6, FLJ41484, FAM70B, RASA3, CDC16, UPF3A, C13orf8 V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007) q34

14 18071243 19360529 RP11-404K10 RP11-447E14 11 1.289286 -0.411029411 OR11H12, POTE14, LOC440157, OR4Q3, OR4M1

V_0812_LC15340_Sharp et al. (2005), V_2174_LC15340_Locke et al. (2006), V_2256_LC15340_Locke et al. (2006), V_4822_LC15340_Wong et al. (2007), V_4823_LC15340_Wong et al. (2007), V_4824_LC15340_Wong et al. (2007), V_4825_LC15340_Wong et al. (2007), V_4826_LC15340_Wong et al. (2007),

V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.2

14 23602843 24412156 RP11-793B24 RP11-738N7 8 0.809313 -0.318577694C14orf121, CPNE6, NRL, PCK2, WDR23, LOC161247, PSME1, C14orf122, PSME2, RNF31, ISGF3G, REC8L1, IPO4, TM9SF1, TSSK4, CHMP4A, MDP-1, NEDD8, GMPR2, TINF2, TGM1, RABGGTA, DHRS1, C14orf21, CIDEB, LTB4R2, LTB4R, ADCY4,

RIPK3, NFATC4, KIAA1305, CBLN3, KIAA0323, C14orf124, CMA1, CTSG, GZMH, GZMB, STXBP6 q1214 98297681 102013573 RP11-57E12 RP11-454C5 36 3.715892 -0.449810838 BCL11B, SETD3, CCNK, KIAA1822, CYP46A1, EML1, EVL, DEGS2, YY1, SLC25A29, C14orf68, WARS, WDR25, KIAA1446, DLK1, FLJ41170, DIO3, PPP2R5C, DYNC1H1, HSP90AA1, WDR20, RAGE, C14orf131, CINP, KIAA0329 V_4847_LC16001_Wong et al. (2007) q32.2-q32.31

14 103262333 106318374 RP11-742J22 CTD-2313E3 29 3.056041 -0.373782967 ZFYVE21, PPP1R13B, C14orf2, TDRD9, LOC374569, LOC400258, FLJ42486, C14orf151, C14orf173, ADSSL1, SIVA1, AKT1, KIAA0284, PLD4, C14orf79, CDCA4, GPR132, JAG2, NUDT14, BRF1, BTBD6, PACS2, MTA1, CRIP2, CRIP1, C14orf80, TMEM121

V_0182_LC16055_Iafrate et al. (2004), V_0770_LC16055_Sharp et al. (2005), V_0771_LC16055_Sharp et al. (2005), V_0772_LC16055_Sharp et al. (2005), V_0773_LC16055_Sharp et al. (2005), V_0774_LC16055_Sharp et al. (2005), V_2176_LC16055_Locke et al. (2006), V_2177_LC16055_Locke et al. (2006), V_2178_LC16055_Locke et al. (2006), V_2179_LC16055_Locke et al. (2006), V_4849_LC16055_Wong et al. (2007), V_4850_LC16055_Wong et al. (2007), V_4851_LC16055_Wong et al. (2007), V_4852_LC16055_Wong et al. (2007), V_4853_LC16055_Wong et al. (2007), V_4854_LC16055_Wong et al. (2007), V_4855_LC16055_Wong et al. (2007), V_4856_LC16055_Wong et al. (2007), V_4857_LC16055_Wong et al. (2007), V_4858_LC16055_Wong et al. (2007),

V_4859_LC16055_Wong et al. (2007), V_4860_LC16055_Wong et al. (2007), V_0377_LC16055_Bejjani et al. (2005) q32.33

15 18276592 18872738 RP11-607H20 RP11-374J6 9 0.596146 -0.336231003 LOC283755V_0776_LC16090_Sharp et al. (2005), V_2181_LC16090_Locke et al. (2006), V_4861_LC16090_Wong et al. (2007), V_4862_LC16090_Wong et al. (2007),


15 19116968 20918715 CTD-2155N19 RP11-15B8 19 1.801747 -0.659209238 POTE15, OR4M2, OR4N4, LOC650137, TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1

V_0775_LC16090_Sharp et al. (2005), V_2180_LC16090_Locke et al. (2006), V_2182_LC16090_Locke et al. (2006), V_2183_LC16090_Locke et al. (2006), V_4863_LC16090_Wong et al. (2007), V_4865_LC16090_Wong et al. (2007), V_4866_LC16090_Wong et al. (2007), V_4867_LC16090_Wong et al. (2007), V_4868_LC16090_Wong et al. (2007), V_4869_LC16090_Wong et al. (2007), V_4870_LC16090_Wong et al. (2007), V_4871_LC16090_Wong et al. (2007), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007),

V_4878_LC16090_Wong et al. (2007), V_4879_LC16090_Wong et al. (2007) q11.215 21212934 21572574 RP11-262I11 RP11-494F2 3 0.35964 -0.304416238 MKRN3, NDN q11.2

15 26590572 62130086 RP11-276P1 RP11-804E8 313 35.539514 -1.676561706

LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2,

C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C, GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1,

MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76, FRMD5, CASC4, CTDSPL2, EIF3S1, KIAA1840, B2M, RNF36, C15orf43, SORD, DUOX2, DUOXA2, NIP, DUOX1, SHF, SLC28A2, GATM, SPATA5L1, C15orf48, SLC30A4, C15orf21, PLDN, SQRDL, SEMA6D, SLC24A5, MYEF2, SLC12A1, DUT, FBN1, CEP152, SHC4, C

V_0185_LC16139_Iafrate et al. (2004), V_0186_LC16139_Iafrate et al. (2004), V_0187_LC16139_Iafrate et al. (2004), V_0188_LC16238_Iafrate et al. (2004), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4882_LC16139_Wong et al. (2007), V_4883_LC16139_Wong et al. (2007), V_4884_LC16139_Wong et al. (2007), V_4885_LC16139_Wong et al. (2007), V_4886_LC16139_Wong et al. (2007), V_4887_LC16139_Wong et al. (2007), V_4888_LC16139_Wong et al. (2007), V_4889_LC16139_Wong et al. (2007), V_4890_LC16139_Wong et al. (2007), V_4891_LC16139_Wong et al. (2007), V_4892_LC16139_Wong et al. (2007), q13.1-q22.31

15 62837208 66193127 RP11-639L19 RP11-290C13 27 3.355919 -0.731713505RBPMS2, C15orf20, PLEKHQ1, ANKDD1A, SPG21, MTFMT, OSTbeta, RASL12, PDCD7, CLPX, CILP, PARP16, PUNC, NOPE, DPP8, PTPLAD1, C15orf44, SLC24A1, DENND4A, RAB11A, MEGF11, MGC4562, FLJ20516, MAP2K1, SNAPC5, RPL4, ZWILCH,

LCTL, SMAD6, SMAD3, FLJ11506, IQCH, MAP2K5, LBXCOR1, PIAS1 V_0786_LC16331_Sharp et al. (2005) q22.31-q2315 67942185 68651700 RP11-58G17 RP11-96C21 5 0.709515 -0.730304928 TLE3 V_4904_LC16360_Wong et al. (2007) q23

15 69491309 93031016 RP11-640P17 RP11-165G14 196 23.539707 -0.828619057

THSD4, NR2E3, MYO9A, SENP8, GRAMD2, PKM2, PARP6, BRUNOL6, HEXA, FLJ27523, ARIH1, GOLGA, BBS4, ADPGK, NEO1, HCN4, LOC283677, NPTN, CD276, LOC388135, TBC1D21, LOXL1, STOML1, PML, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, SEMA7A, UBL7, ARID3B, CLK3, LSM16, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, SCAMP2, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC, C15orf39, COMMD4, NEIL1, MAN2C1, SIN3A, PTPN9, SNUPN, IMP3, SH3PX3, CSPG4, ODF3L1, UBE2Q2, FBXO22, NRG4, C15orf27, ETFA, ISL2, ZNF291, RCN2, PSTPIP1, TSPAN3, HMG20A, LRRN6A, TBC1D2B, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, LOC123688, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, MORF4L1, CTSH, RASGRF1, TMED3, KIAA1024, MTHFS, C15orf37, BCL2A1, ZA20D3, FAH, ARNT2, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5, TMC3, RKHD3, EFTUD1, DKFZp666G057, FLJ22795, RPS17, CPEB1, AP3B2, FSD2, WHDC1, HOMER2, FAM103A1, C15orf40, BTBD1, TM6SF1, HDGFRP3, BNC1, SH3GL3, ADAMTSL3, KIAA1920, ZSCAN2, WDR73, NMB, SEC11L1, ZNF592, ALPK3, SLC28A1, PDE8A, AKAP13, KLHL25, FLJ32310, NTRK3, MRPL46, MRPS11, DET1, ISG20L1, ISG20, ACAN,

HAPLN3, MFGE8, ABHD2, RLBP1, KIAA1794, POLG, RHCG, C15orf42, KIF7, PLIN, PEX11A, LOC56964, MESP1, MESP2, ANPE

V_0189_LC16389_Iafrate et al. (2004), V_0190_LC16450_Iafrate et al. (2004), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2195_LC16389_Locke et al. (2006), V_2196_LC16398_Locke et al. (2006), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4905_LC16412_Wong et al. (2007), V_4906_LC16417_Wong et al. (2007), V_4907_LC16456_Wong et al. (2007), V_4908_LC16467_Wong et al. (2007), V_4909_LC16491_Wong et al. (2007), V_4910_LC16491_Wong et al. (2007) q23-q26.2

15 95806678 100260946 RP11-306B2 RP11-95F11 46 4.454268 -0.764788218 ARRDC4, FLJ39743, IGF1R, DMN, TTC23, LRRC28, MEF2A, LYSMD4, LOC400464, ADAMTS17, FLJ42289, LASS3, LINS1, ASB7, LOC440313, ALDH1A3, LRRK1, CHSY1, SELS, SNRPA1, PCSK6, TM2D3, TARSL2, OR4F6, OR4F15 V_0192_LC16541_Iafrate et al. (2004), V_0193_LC16579_Iafrate et al. (2004), V_2201_LC16579_Locke et al. (2006), V_2202_LC16579_Locke et al. (2006) q26.2-q26.3

16 45058798 67576321 RP11-46D6 RP11-470N3 263 22.517523 -1.103305766

FLJ43980, SHCBP1, VPS35, ORC6L, MLCK, LOC388272, GPT2, DNAJA2, NETO2, ITFG1, PHKB, ABCC12, ABCC11, LONPL, SIAH1, N4BP1, CBLN1, MGC33367, ZNF423, C16orf69, FLJ20718, PAPD5, ADCY7, BRD7, NKD1, SLIC1, CARD15, CYLD, SALL1, TNRC9, CHD9, RBL2, FTS, KIAA1005, FTO, IRX3, IRX5, IRX6, MMP2, AYTL1, CAPNS2, SLC6A2, CES1, CES7, GNAO1, AMFR, NUDT21, OGFOD1, BBS2, MT4, MT3, MT2A, MT1E, MT1M, MT1A, MT1B, MT1F, MT1G, MT1H, MTE, MT1X, NUP93, SLC12A3,

HERPUD1, CETP, NOD27, CPNE2, NIP30, RSPRY1, ARL2BP, TM4SF11, CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4, MGC10992, GPR114, GPR56, GPR97, CCDC135, KATNB1, KIFC3, CNGB1, TEPP, ZNF319, C16orf57, MMP15, GTL3, CSNK2A2, HSPC065, Klkbl4, FLJ13912, NDRG4, SETD6, CNOT1, FLJ10815, GOT2, CDH8, CDH11, CDH5, TK2, CKLF, CMTM1, CMTM2, CMTM3, CMTM4, DYNC1LI2, APPBP1, CA7, PDP2, CDH16, RRAD, FAM96B, CES2, FLJ21736, FLJ37464, CBFB, LIN10, MGC4655, TRADD, FBXL8, HSF4, NOL3, LOC653319, LOC283849, E2F4, ELMO3, LRRC29, HSPC171, FHOD1, SLC9A5, PLEKHG4, LRRC36, CGI-38, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, FAM65A, CTCF, RLTPR, ACD, PARD6A, C16orf48,

LOC388284, MGC11335, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, RCD-8, UNQ2446, PSKH1, CTRL, PSMB10, LCAT, SL

V_0198_LC16863_Iafrate et al. (2004), V_4954_LC16857_Wong et al. (2007), V_4955_LC16867_Wong et al. (2007), V_4956_LC16873_Wong et al. (2007), V_4957_LC16881_Wong et al. (2007), V_4958_LC16891_Wong et al. (2007), V_4959_LC16914_Wong et al. (2007), V_4960_LC16916_Wong et al. (2007),


17 52192 22033509 CTD-2326F1 RP11-29L17 238 21.981317 -0.963363633

RPH3AL, LOC400566, FAM101B, VPS53, FAM57A, GEMIN4, C17orf25, RNMTL1, NXN, TIMM22, ABR, TUSC5, YWHAE, CRK, MYO1C, SKIP, PITPNA, SLC43A2, SCARF1, RILP, PRPF8, MGC14376, WDR81, SERPINF2, SERPINF1, SMYD4, RPA1, RTN4RL1, DPH1, OVCA2, HIC1, SMG6, SRR, TSR1, RUTBC1, MNT, LOC284009, METT10D, PAFAH1B1, KIAA0664, GARNL4, OR1D4, OR1D5, OR1D2, OR1G1, OR1A2, OR1A1, OR3A2, OR3A1, OR3A4, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3,

TRPV1, CARKL, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, P2RX1, ATP2A3, ZZEF1, CYB5D2, ANKFY1, UBE2G1, MGC29671, MYBBP1A, GGT6, FLJ42461, ALOX15, PELP1, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, LOC388323, PSMB6, PLD2, MINK1, CHRNE, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, UNQ5783, RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1,

KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1, ALOX12, MGC71993, C17orf49, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2, PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, TMEM95, TNK1, PLSCR3, C17orf61, NLGN2, C1


V_4996_LC17400_Wong et al. (2007), V_4997_LC17400_Wong et al. (2007), V_4998_LC17406_Wong et al. (2007) p13.3-p11.217 39213972 39875256 RP11-624L10 RP11-812N9 6 0.661284 -0.398479574 MPP3, CD300LG, MPP2, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, C17orf53, ASB16, C17orf65, TMUB2, UBTF, SLC4A1, RPIP8, CGI-69, GRN, ITGA2B, KIAA0553 V_5008_LC17512_Wong et al. (2007) q21.31

17 40782110 41719579 RP11-485E15 RP11-162O14 11 0.937469 -0.485369735 ARHGAP27, LOC201175, PLEKHM1, C17orf69, CRHR1, IMP5, MAPT, STH, KIAA1267V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007), V_5012_LC17522_Wong et al. (2007) q21.31

17 42157798 42474254 RP11-360B17 RP11-63A1 3 0.316456 -0.52696682 NSF, WNT3, WNT9B, GOSR2, RPRML V_0207_LC17522_Iafrate et al. (2004), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007) q21.32

17 72219715 78398677 RP11-57N4 RP11-424C10 63 6.178962 -0.623613027

PTDSR, LOC124512, SFRS2, ET, MGAT5B, SEC14L1, FLJ45079, TNRC6C, TMC6, TMC8, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17, DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713, ENPP7, CBX2, CBX8, CBX4, TBC1D16, GAA, DDX48, CARD14, SGSH, SLC26A11, KIAA1618, C17orf27, FLJ35220, NPTX1, KIAA1303, CHMP6, BAIAP2, AATK, AZI1, C17orf56, MGC15523, C17orf55, TMEM105, BAHCC1, ACTG1, FSCN2, C17orf70, NPLOC4, TSPAN10, PDE6G, LOC339229, ARL16, HGS, MRPL12, SLC25A10, DYSFIP1, P4HB, ARHGDIA, THOC4, ANAPC11, NPB, PCYT2, SIRT7, MAFG, PYCR1, NOTUM, ASPSCR1, STRA13, LRRC45, RAC3, DCXR, RFNG, GPS1, DUS1L, FASN, CCDC57,

SLC16A3, CSNK1D, CD7, SECTM1, FLJ35767, UTS2R, FLJ22222, HEXDC, C17orf62, NARF, FOXK2, WDR45L, RAB40B, FN3KRP, FN3K, TBCD, ZNF750

V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et al. (2006), V_4327_LC17763_Wong et al. (2007), V_5033_LC17737_Wong et al. (2007), V_5034_LC17743_Wong et al. (2007), V_5035_LC17750_Wong et al. (2007), V_5036_LC17763_Wong et al. (2007), V_5039_LC17763_Wong et al. (2007), V_5040_LC17763_Wong et al. (2007), V_5041_LC17763_Wong et al. (2007), V_5042_LC17763_Wong et al. (2007), V_5043_LC17763_Wong et al. (2007) q25.2-q25.3

18 20129364 33136674 RP11-451L13 RP11-460O16 123 13.00731 -0.682712781OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, KCTD1, AQP4, CHST9, CDH2, DSC3, DSC2, DSC1, DSG1, DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, MEP1B, FAM59A, KLHL14, C18orf34, NOL4, DTNA, MAPRE2,

ZNF397, ZNF271, ZNF24, ZNF396, C18orf37, GALNT1, C18orf21, P15RS, SLC39A6, STATIP1, MOCOS, FHOD3, C18orf10, KIAA1328, BRUNOL4V_0216_LC18106_Iafrate et al. (2004), V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007),

V_5050_LC18106_Wong et al. (2007) q11.2-q12.218 33453811 40538428 RP11-19D11 RP11-369C9 61 7.084617 -0.647816111 PIK3C3, RIT2, SYT4, SETBP1 V_0217_LC18181_Iafrate et al. (2004), V_5053_LC18156_Wong et al. (2007) q12.2-q12.318 41713134 42202989 CTD-2032O9 RP11-434F16 5 0.489855 -0.536978417 KIAA1632, PSTPIP2, ATP5A1, CCDC5, C18orf25, RNF165 q12.3-q21.1

18 42680361 69639405 RP11-776B3 RP11-458L11 257 26.959044 -0.809670704

PIAS2, KATNAL2, TCEB3C, TCEB3B, HDHD2, IER3IP1, SMAD2, ZBTB7C, KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6,C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468,

TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1

V_0218_LC18301_Iafrate et al. (2004), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007),

V_5061_LC18463_Wong et al. (2007) q21.1-q22.318 72500616 73061345 RP11-703M10 RP11-294P6 5 0.560729 -0.725330993 ZNF236, MBP q2318 75015902 76098439 RP11-71E11 RP11-565D23 10 1.082537 -0.741889506 ATP9B, NFATC1, CTDP1, KCNG2, PQLC1, TXNL4A, C18orf22, KIAA0863, PARD6G V_5064_LC18537_Wong et al. (2007) q23

19 75953 8709106 RP11-505K21 RP11-1077G12 79 8.633153 -0.546718315

FLJ45445, PPAP2C, KIAA1193, THEG, SHC2, C19orf19, MADCAM1, C19orf20, CDC34, GZMM, BSG, HCN2, POLRMT, FGF22, RNF126, FSTL3, PRSSL1, PALM, C19orf21, PTBP1, PRG2, AZU1, PRTN3, ELA2, CFD, THRAP5, C19orf22, KISS1R, ARID3A, WDR18, GRIN3B, C19orf6, CNN2, ABCA7, HMHA1, POLR2E, GPX4, KIAA0963, STK11, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, LOC401019, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5,

RKHD1, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4, LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R,

C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK, KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2,KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30, FEM1A, TICAM1, M6PRBP1, ARRDC5, C19orf31, UH


19 8751188 24085177 RP13-622L9 CTD-2112N10 169 15.333989 -0.627150054

ZNF558, MBD3L1, MUC16, OR1M1, OR7G2, OR7G1, OR7G3, ZNF317, OR7D2, OR7D4, OR7E24, ZNF699, ZNF559, ZNF177, ZNF266, ZNF560, ZNF426, ZNF121, ZNF561, ZNF562, LOC162993, FBXL12, UBL5, PIN1, OLFM2, COL5A3, RDH8, LOC388503, FLJ11286, ANGPTL6, PPAN, PPAN-P2RY11, P2RY11, EIF3S4, DNMT1, EDG5, MRPL4, ICAM1, ICAM4, ICAM5, MGC19604, RAVER1, ICAM3, TYK2, CDC37, PDE4A, KEAP1, EDG8, ATG4D, FLJ12949, CDKN2D, AP1M2, SLC44A2, ILF3, QTRT1, DNM2,

TMED1, CARM1, YIPF2, LOC90580, SMARCA4, LDLR, SPBC24, ANKRD25, DOCK6, LOC55908, TSPAN16, RAB3D, UNQ501, LOC126075, LPPR2, FLJ35119, EPOR, RGL3, MGC20983, PRKCSH, ELAVL3, ZNF653, SITPEC, CNN1, ELOF1, ACP5, ZNF627, LOC401898, HSZFP36, ZNF441, ZNF491, ZNF439, ZNF69, ZNF700, ZNF440L, ZNF433, LOC729747, ZNF20, ZNF625, ZNF136, ZNF44, ZNF563, ZNF442, ZNF443, ZNF709, ZNF564, ZNF490, FLJ90396, MAN2B1, C19orf56, MORG1, DHPS, FBXW9, TNPO2,

MGC2803, ASNA1, BEST2, HOOK2, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, DNASE2, KLF1, GCDH, FARSA, CALR, RAD23A, GADD45GIP1, DAND5, NFIX, LYL1, TRMT1, BTBD14B, STX10, IER2, CACNA1A, MGC10471, MGC3207, HSPC023, ZSWIM4, MGC11271, CC2D1A, FLJ23447, LOC90379, RFX1, RLN3, IL27RA, SAMD1, PRKACA, ASF1B, LPHN1, CD97, DDX39, P

V_0220_LC18794_Iafrate et al. (2004), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007), V_5087_LC18821_Wong et al. (2007), V_5088_LC18841_Wong et al. (2007), V_5089_LC18844_Wong et al. (2007), V_5090_LC18847_Wong et al. (2007), V_5091_LC18881_Wong et al. (2007), V_5092_LC18883_Wong et al. (2007),

V_5093_LC18883_Wong et al. (2007), V_5094_LC18905_Wong et al. (2007), V_5095_LC18908_Wong et al. (2007) p13.2-p12

20 37210 7188821 CTD-2506E2 CTD-2340A9 63 7.151611 -0.762728906

DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55, ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35, TGM3, TGM6, SNRPB, ZNF343, TMC2, NOL5A, IDH3B, CPXM, C20orf141, FAM113A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5, FLJ13149, ProSAPiP1, C20orf116, ITPA, SLC4A11, ATRN, GFRA4,

ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA, PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2, PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2

V_0222_LC19227_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007), V_5121_LC19253_Wong et al. (2007), V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007) p13-p12.3

20 9099886 10439911 RP11-346H18 RP11-389J23 12 1.340025 -0.586921866 PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, C20orf94 p12.2

20 15818281 24948021 RP11-191H20 RP11-514G19 70 9.12974 -0.650395438C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179, SNX5, C20orf72, OVOL2, CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, C20orf26, INSM1,

C20orf74, C20orf19, XRN2, NKX2-2, PAX1, FOXA2, SSTR4, THBD, CD93, NXT1, ZNF336, NAPB, CSTL1, CST11, CST8, CST9L, CST9, CST3, CST4, CST1, CST2, CST5, GGTLA4, C20orf39, CST7, C20orf3, ACSS1V_0224_LC19418_Iafrate et al. (2004), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et al. (2007),

V_5129_LC19510_Wong et al. (2007) p12.1-p11.2120 25498847 26013217 RP11-161K13 RP11-269F15 5 0.51437 -0.368165448 KIAA0980, NANP, ZNF337 p11.21-p11.120 34580320 35582624 RP13-489C6 RP11-138A15 8 1.002304 -0.490209276 DLGAP4, MYL9, TGIF2, C20orf24, SLA2, NDRG3, C20orf172, C20orf117, C20orf118, SAMHD1, RBL1, C20orf132, RPN2, GHRH, MANBAL, SRC, BLCAP q11.23

21 9749033 13345534 RP11-289G8 CTD-2251K12 9 3.596501 -0.502778723 TPTE, BAGE2, BAGE3, BAGE4, BAGE5, BAGEV_2253_LC20054_Locke et al. (2006), V_5151_LC20054_Wong et al. (2007), V_5152_LC20054_Wong et al. (2007), V_5153_LC20054_Wong et al. (2007),

V_5154_LC20054_Wong et al. (2007), V_5155_LC20054_Wong et al. (2007), V_5156_LC20054_Wong et al. (2007) p11.2-q11.221 24070645 24687098 RP11-614P9 RP11-709D12 3 0.616453 -0.63661578 q21.221 33008286 35298713 RP11-637F8 RP11-67H7 19 2.290427 -0.639215732 SYNJ1, C21orf66, C21orf62, OLIG2, OLIG1, IFNAR2, IL10RB, IFNAR1, IFNGR2, TMEM50B, C21orf55, GART, SON, DONSON, CRYZL1, ITSN1, ATP5O, MRPS6, SLC5A3, KCNE2, C21orf51, KCNE1, DSCR1, CLIC6, RUNX1 q22.11-q22.12

21 37864241 42358431 CTD-2507A20 RP11-374L23 43 4.49419 -0.431151159KCNJ6, DSCR4, DSCR8, DSCR10, KCNJ15, ERG, C21orf24, ETS2, FLJ45139, DSCR2, BRWD1, C21orf87, LOC728776, HMGN1, WRB, C21orf13, SH3BGR, C21orf88, B3GALT5, LOC150084, PCP4, DSCAM, BACE2, PLAC4, FAM3B, MX2, MX1, TMPRSS2,

C21orf129, RIPK4, PRDM15, C21orf25, ZNF295 q22.13-q22.3

21 44150512 46926492 RP11-190A24 RP11-457P7 36 2.77598 -0.355610269

AGPAT3, TMEM1, PWP2H, C21orf33, ICOSLG, DNMT3L, AIRE, PFKL, C21orf2, TRPM2, LRRC3, C21orf29, KRTAP10-1, KRTAP10-2, KRTAP10-3, KRTAP10-4, KRTAP10-5, KRTAP10-6, KRTAP10-7, KRTAP10-8, KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-3, KRTAP12-2, KRTAP12-1, KRTAP10-12, UBE2G2, SUMO3, PTTG1IP, ITGB2, C21orf69, C21orf67, C21orf70, ADARB1, PRED57, POFUT2, COL18A1, C21orf123, SLC19A1, PCBP3, COL6A1, COL6A2, FTCD, C21orf56, LSS,

MCM3AP, C21orf57, C21orf58, PCNT, DIP2A, S100B, PRMT2 V_5163_LC20269_Wong et al. (2007) q22.3

22 14440103 14952669 CTD-2177M20 RP11-561P7 7 0.512566 -0.300124162 ACTBL1, OR11H1V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007),

V_5165_LC20342_Wong et al. (2007), V_5166_LC20342_Wong et al. (2007) q11.1

22 28949760 39877033 RP11-11B17 RP11-290I2 105 10.927273 -0.754552552

LIF, OSM, LOC652968, TBC1D10A, SF3A1, LOC550631, LOC200312, SEC14L2, MTP18, SEC14L3, SEC14L4, GAL3ST1, PES1, TCN2, SLC35E4, DUSP18, OSBP2, MORC2, SMTN, SELM, PIB5PA, PLA2G3, RNF185, LIMK2, MGC17330, ZNF278, DRG1, EIF4ENIF1, SFI1, PISD, MGC50372, DEPDC5, YWHAH, LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28, BPIL2, FBXO7, SYN3, TIMP3, LARGE, RAXLX, HMG2L1, TOM1, HMOX1, MCM5, RASD2, MB, LOC284912, APOL6, APOL5,

RBM9, APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB, NCF4, CSF2RB, MGC35206, TST, MPST, KCTD17, TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2, PSCD4, KIAA1904, MFNG, CARD10, CDC42EP1, LGALS2, GGA1, SH3BP1, PDXP, LGALS1, MGC3731, TRIOBP, H1F0, GCAT, GALR3, LOC129138, EIF3S6IP, MICAL-L1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF, C22orf5, CSNK1E, KCNJ4, KDELR3, DDX17, DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7, PDGFB, RPL3, SYNGR1, MAP3K7IP1, MGAT3, FLJ20232, ATF4, RPS19BP1, CACNA1I, FLJ25421,

GRAP2, FAM83F, TNRC6B, ADSL, RUTBC3, MKL1, MCHR1, SLC25A17, ST13, LOC63929, DNAJB7, RBX1, EP300

V_0236_LC20439_Iafrate et al. (2004), V_0237_LC20476_Iafrate et al. (2004), V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5181_LC20466_Wong et al. (2007), V_5182_LC20466_Wong et al. (2007), V_5183_LC20479_Wong et al. (2007), V_5184_LC20492_Wong et al. (2007),


23 550000 38316915 RP13-76L22 CTD-2135N1 334 37.766915 -1.375460763

XG, GYG2, ARSD, ARSE, ARSH, ARSF, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX-C, KAL1, FAM9A, FAM9B, TBL1X, GPR143, APXL, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9,

SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7

V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0362_LC20686_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006) p22.33-p11.4

23 40348166 41302414 RP11-776A11 RP11-752F15 10 0.954248 -0.516793973 ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK p11.423 45702716 47473809 RP11-203D16 RP11-466C12 16 1.771093 -0.594586483 ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41, ARAF, SYN1, TIMP1, CFP, ELK1, UXT p11.3-p11.23

23 48172092 49556798 RP11-107A19 RP11-122N23 7 1.384706 -0.608101977SLC38A5, FTSJ1, PORCN, EBP, TBC1D25, RBM3, WDR13, WAS, SUV39H1, LOC392465, GATA1, HDAC6, ERAS, PCSK1N, TIMM17B, PQBP1, SLC35A2, PIM2, OTUD5, KCND1, GRIPAP1, TFE3, JM11, PRAF2, WDR45, GPKOW, FLJ21687, PLP2, LMO6,

SYP, CACNA1F, CCDC22, FOXP3, PPP1R3F, GAGE8, GAGE4, GAGE5, GAGE7B, GAGE7, GAGE2, GAGE6, GAGE1, PAGE1, PAGE4 V_0824_LC20844_Sharp et al. (2005), V_2278_LC20844_Locke et al. (2006) p11.2323 50908328 52085986 RP11-737B10 RP11-363G10 10 1.177658 -0.765580461 NUDT10, LOC340602, NUDT11, GSPT2, MAGED1, MAGED4, LOC401589 p11.22

23 53332120 67998501 RP11-619J22 CTD-2270N13 116 14.666381 -0.96788756SMC1L1, RIBC1, HADH2, HUWE1, PHF8, CXorf17, WNK3, RP1-112K5.2, FGD1, GNL3L, ITIH5L, MAGED2, TRO, PFKFB1, APEX2, ALAS2, PAGE2B, PAGE2, FAM104B, PAGE5, PAGE3, MAGEH1, USP51, FOXR2, RRAGB, KLF8, UBQLN2, SPIN3, SPIN-2,

SPIN2, FLJ31204, ZXDB, ZXDA, LOC139886, ARHGEF9, FAM123B, ASB12, MTMR8, KIAA1166, ZC3H12B, LAS1L, MSN, VSIG4, HEPH, EDA2R, AR, OPHN1, YIPF6, STARD8, EFNB1 V_0243_LC20866_Iafrate et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) p11.22-q13.1

23 68425429 134647313 RP11-761G17 RP11-141E9 612 66.221884 -0.946389558

TMEM28, EDA, DGAT2L4, OTUD6A, IGBP1, DGAT2L6, DGAT2L3, P2RY4, ARR3, RAB41, PDZD11, KIF4A, GDPD2, DLG3, TEX11, SLC7A3, SNX12, MLLT7, LOC158830, IL2RG, MED12, NLGN3, GJB1, ZMYM3, NONO, ITGB1BP2, TAF1, OGT, ACRC, CXCR3, RGAG4, LOC340527, FLJ44635, PIN4, LOC728758, FLJ20105, RPS4X, CITED1, HDAC8, PHKA1, LOC728656, DMRTC1, LOC645974, LOC340529, NAP1L2, CDX4, CHIC1, ZCCHC13, SLC16A2, RNF12, KIAA2022, ABCB7, UPRT, ZDHHC15,

MAGEE2, CXorf26, MAGEE1, FGF16, ATRX, DKFZp564K142, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, ZCCHC5, GPR23, P2RY10, GPR174, ITM2A, TBX22, FAM46D, BRWD3, NSBP1, SH3BGRL, POU3F4, CYLC1, RPS6KA6, CXorf43, FAM121A, SATL1, ZNF6, POF1B, CHM, DACH2, KLHL4, CPXCR1, TGIF2LX, PABPC5, PCDH11X, NAP1L3, RP1-32F7.2, DIAPH2, RPA4, PCDH19, TNMD, TSPAN6, SRPX2, SYTL4, CSTF2, NOX1, XKRX, ARL13A, CXorf34, TMEM35, FSHPRH1, DRP2, TAF7L, TIMM8A, BTK, RPL36A, GLA, HNRPH2, ARMCX1, ARMCX6, ARMCX3, ARMCX2, NXF5, ZMAT1, TCEAL2, TCEAL6, NGFRAP1L1, NXF2, TMSL8, ARMCX5, GPRASP1, GPRASP2, BHLHB9, LOC286526, BEX1, NXF3, BEXL1, TCEAL8, TCEAL5, BEX2, TCEAL7, WBP5,

NGFRAP1, RAB40A, TCEAL4, TCEAL3, TCEAL1, MORF4L2, TMEM31, PLP1, RAB9B, MGC39900, H2BFWT, MCART6, CXorf39,

V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004), V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. (2004), V_2130_LC21120_Locke et al. (2006),

V_2280_LC21120_Locke et al. (2006) q13.1-q26.3

23 134810188 151595970 RP11-421I2 RP13-586H7 170 16.785782 -1.058059767

SAGE1, TMEM32, SLC9A6, FHL1, GPR112, BRS3, HTATSF1, VGLL1, CD40LG, ARHGEF6, RBMX, GPR101, ZIC3, FGF13, F9, MCF2, ATP11C, LOC347487, SOX3, CDR1, SPANXB1, SPANXB2, LDOC1, SPANXC, SPANXA2, SPANXA1, SPANXD, SPANXE, MAGEC3, MAGEC1, MAGEC2, SPANX-N4, SPANX-N3, SLITRK4, SPANX-N2, UBE2NL, SPANXN1, SLITRK2, CXorf1, FMR1, FMR1NB, AFF2, IDS, CXorf40A, LW-1, FAM11A, MAGEA11, LOC728269, MAGEA9, MAGEA8, FLJ16423, CXorf40B, CXorf6, MTM1,

MTMR1, CD99L2, HMGB3, GPR50, LOC203547, PASD1, PRRG3, FATE1, CNGA2, MAGEA4, GABRE, MAGEA5, MAGEA10, GABRA3, GABRQ V_0255_LC21142_Iafrate et al. (2004), V_0827_LC21138_Sharp et al. (2005), V_2282_LC21138_Locke et al. (2006) q26.3-q28

23 152462709 154906914 RP11-437K1 RP11-1245L19 29 2.444205 -0.783872442

ATP2B3, FAM58A, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ, ATP6AP1, GDI1, FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, CTAG1A, CTAG1B, CTAG2, GAB3, DKC1, MPP1, F8, FUNDC2, MTCP1, CXorf53, VBP1, RAB39B, CLIC2, F8A1, F8A2, F8A3, H2AFB1,

H2AFB3, H2AFB2, TMLHE V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q2824 482246 7663473 CTD-2584M8 RP11-105L10 61 7.181227 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y, PRKY V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 39369918 39680448 RP11-528I12 RP11-216E21 4 0.31053 0.562544175 MACF1 p34.3-p34.21 85248083 88982596 RP11-679P24 RP11-382A2 42 3.734513 0.779853622 MCOLN3, WDR63, C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, CLCA3, SH3GLB1, HS2ST1, LMO4, PKN2 p22.3-p22.21 89609600 91109606 RP11-272L5 RP11-549H6 16 1.500006 0.72885474 GBP6, LRRC8B, LRRC8C, LRRC8D, ZNF326, BARHL2 p22.21 93984119 94922866 RP11-494N10 RP11-106M17 8 0.938747 0.632782958 DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3 p22.1-p21.3

1 95797560 104229457 RP11-4I24 RP11-662G17 80 8.431897 0.824391172 PTBP2, DPYD, SNX7, PAP2D, LPPR4, PALMD, FRRS1, AGL, SLC35A3, HIAT1, SASS6, CCDC76, LRRC39, DBT, RTCD1, CDC14A, GPR88, VCAM1, EXTL2, SLC30A7, DPH5, EDG1, OLFM3, COL11A1, RNPC3, AMY2B, AMY2A, AMY1A, AMY1C, AMY1BV_0012_LC0649_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_4236_LC0622_Wong et al. (2007),

V_4237_LC0630_Wong et al. (2007), V_4238_LC0649_Wong et al. (2007), V_0365_LC0642_Vissers et al. p21.3-p21.11 105585465 108423660 RP11-214B13 RP11-252A16 33 2.838195 0.72208628 PRMT6, NTNG1, VAV3 V_0682_LC0656_Sharp et al. (2005), V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007) p21.1-p13.31 111442529 113048296 RP11-434F18 RP11-676F24 14 1.605767 1.014256007 TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C1orf88, OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A, C1orf183, DDX20, KCND3, CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC V_4242_LC0704_Wong et al. (2007) p13.3-p13.2

1 113440339 142797217 RP11-615F19 RP11-510I18 71 29.356878 1.000569273LRIG2, MAGI3, PHTF1, RSBN1, PTPN22, C1orf178, AP4B1, DCLRE1B, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, DENND2C, AMPD1, NRAS, CSDE1, SIKE, SYCP1, TSHB, TSPAN2, NGFB, VANGL1, CASQ2, NHLH2, SLC22A15, C1orf161, ATP1A1, CD58,

IGSF3, CD2, PTGFRN, IGSF2, TTF2, TRIM45, VTCN1, MAN1A2, FAM46C, GDAP2, WDR3, SPAG17, TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2, LOC440607V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_4243_LC0729_Wong et al. (2007), V_4244_LC0743_Wong et al. (2007),

V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007) p13.2-q21.1

1 143665914 143935783 RP11-184I13 RP11-270L7 6 0.269869 0.661362252 PDE4DIP, SEC22B, NOTCH2NLV_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007),

V_4251_LC0752_Wong et al. (2007) q21.12 20054637 21011770 RP11-624N20 RP11-452B12 7 0.957133 0.776163575 MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3, GDF7, C2orf43 p24.12 27507766 28672073 RP11-385I17 RP11-651P3 13 1.164307 1.015463562 NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE, FOSL2, PLB1 p23.3-p23.2

2 34559426 36670315 RP11-367I7 CTD-2019E22 24 2.110889 0.772754338 CRIM1, FEZ2V_0018_LC1749_Iafrate et al. (2004), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007),

V_4281_LC1752_Wong et al. (2007) p22.3-p22.22 39690526 41562349 RP11-288L6 RP11-730A18 14 1.871823 0.716776753 MGC33926, THUMPD2, SLC8A1 p22.12 49942250 51543039 RP11-16B4 RP11-484P23 13 1.600789 0.637669403 NRXN1 p16.32 57703724 58396009 RP11-781B18 RP11-27O22 4 0.692285 0.749794731 VRK2, FANCL V_4286_LC1888_Wong et al. (2007) p16.12 86903357 88056043 RP13-502G23 RP11-86I2 22 1.152686 0.648815246 CD8B, LOC285074, MGC4677, PLGLB2, PLGLB1, RGPD2 V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et al. (2007), V_4293_LC2035_Wong et al. (2007), V_4294_LC2035_Wong et al. (2007) p11.22 95451694 96126973 RP11-440D17 RP11-401C13 7 0.675279 1.248926876 TRIM43, LOC150763 V_4299_LC2057_Wong et al. (2007) q11.1-q11.22 96942431 98604893 RP11-219H23 RP11-238K3 18 1.662462 1.225374296 DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B, ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A q11.2

2 101787124 114279071 RP11-651L7 RP11-23J23 107 12.491947 1.166246655

MAP4K4, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294, POU3F3, MRPS9, GPR45, TGFBRAP1, MGC5509, FHL2, NCK2, ECRG4, UXS1, ST6GAL2, SLC5A7, SULT1C3, SULT1C1, SULT1C2, GCC2, LIMS1, RANBP2, FLJ32745, EDAR, LOC729164, C2orf26, MALL, NPHP1, LIMS3, RGPD5, RGPD7, BUB1, ACOXL, BCL2L11, ANAPC1, MERTK, TMEM87B, FLJ37440, ZC3H8, ZC3H6, TTL, POLR1B, CHCHD5, SLC20A1, FLJ40629, IL1A, IL1B, IL1F7, IL1F9, IL1F6,

IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8, CBWD2, FOXD4L1, RABL2A, SLC35F5V_0021_LC2111_Iafrate et al. (2004), V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp et al. (2005),

V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke et al. (2006), V_4303_LC2134_Wong et al. (2007) q11.2-q14.12 119684359 120128215 RP11-332G17 RP11-713O9 5 0.443856 0.810256562 STEAP3, LOC130355, DBI, TMEM37, SCTR, MGC33657 q14.23 13893275 14943213 RP11-271E2 RP11-647G10 8 1.049938 0.898932149 WNT7A, CHCHD4, TMEM43, XPC, LSM3, SLC6A6, GRIP2, C3orf19, C3orf20, FGD5 p25.1-p24.33 150038810 151638691 RP11-12L4 RP11-159D7 25 1.599881 1.098765394 CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2, TSC22D2 V_4355_LC3723_Wong et al. (2007) q24-q25.1


OVISE

7 11303052 20920560 RP11-708A9 RP11-627G3 97 9.617508 0.959075396 TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8

V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004),

V_4526_LC9320_Wong et al. (2007) p21.3-p15.37 25393844 26121748 RP11-161C12 RP11-613P15 7 0.727904 0.805163871 p15.27 27441839 29759315 RP11-812K17 RP11-368L13 21 2.317476 2.536435835 HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171 V_4529_LC9384_Wong et al. (2007) p15.2-p15.17 38719326 39524788 RP11-115G1 RP11-449H23 7 0.805462 0.530939322 VPS41, POU6F2 p14.17 40389101 43695677 RP11-19N7 RP11-10N14 30 3.306576 0.721780187 C7orf10, INHBA, GLI3, C7orf25, PSMA2, MRPL32, HECW1, STK17A, FLJ10803 p14.1-p137 46258799 47694180 RP13-520D10 RP11-655F21 15 1.435381 0.59800352 LOC641980, TNS3 V_4534_LC9482_Wong et al. (2007) p13-p12.37 47880437 49435709 RP11-280F6 RP11-122G11 15 1.555272 0.540140352 PKD1L1, HUS1, SUNC1, UPP1, ABCA13 V_4536_LC9495_Wong et al. (2007) p12.37 50950476 51260743 RP11-15L23 RP11-801F12 3 0.310267 0.509740229 COBL p12.17 51514029 55387311 RP11-399H20 RP11-708P5 34 3.873282 0.826759141 DKFZp564N247, FLJ45974, MGC33530, SEC61G, EGFR V_4537_LC9518_Wong et al. (2007) p12.1-p11.28 40916539 47714847 RP11-681J6 RP11-445A15 26 6.798308 0.981894022 SFRP1, GOLGA7, SLD5, AGPAT6, FLJ25169, ANK1, MYST3, AP3M2, PLAT, IKBKB, POLB, DKK4, VDAC3, SLC20A2, C8orf40, CHRNB3, CHRNA6, THAP1, RNF170, HOOK3, FNTA, FLJ23356, POTE8 V_4590_LC10569_Wong et al. (2007) p11.21-q11.18 50592998 53886240 RP11-488A5 RP11-139K7 27 3.293242 0.598810132 SNTG1, PXDNL, PCMTD1, ST18, UNQ9433, RB1CC1 V_4592_LC10583_Wong et al. (2007), V_4593_LC10587_Wong et al. (2007) q11.22-q11.238 55777036 56593271 RP11-321G13 RP11-359A12 7 0.816235 0.662542961 XKR4 q12.18 57080492 64014767 RP11-759E6 RP11-763K1 60 6.934275 0.763788927 LYN, RPS20, MOS, PLAG1, CHCHD7, RDHE2, PENK, IMPAD1, C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX, CA8, RAB2, CHD7, MGC34646, ASPH, FAM77D V_4594_LC10611_Wong et al. (2007), V_4595_LC10619_Wong et al. (2007) q12.1-q12.38 68653445 69331913 RP11-782B20 RP11-664J13 5 0.678468 0.71334986 CPA6, DEPDC2 q13.28 76656524 78637868 RP11-141A3 RP11-620M15 16 1.981344 0.715471786 ZFHX4, PXMP3 q21.11-q21.128 81608488 83090789 RP11-36K24 RP11-562L10 10 1.482301 0.873836034 ZNF704, PAG1, FABP5, PMP2, PERF15, FABP4, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16 q21.138 89779927 94331876 RP11-642C5 RP11-772P22 40 4.551949 0.963805083 RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64, EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1 q21.3-q22.1

8 95938245 101749095 RP11-272K10 RP11-60C3 44 5.81085 0.878877055INTS8, CCNE2, TP53INP1, C8orf38, PLEKHF2, C8orf37, GDF6, UQCRB, MTERFD1, PTDSS1, SDC2, PGCP, TSPYL5, MTDH, LAPTM4B, MATN2, RPL30, C8orf47, HRSP12, POP1, NPAL2, KCNS2, STK3, OSR2, VPS13B, COX6C, RGS22, FBXO43, POLR2K,

SPAG1, RNF19, ANKRD46, MGC39715 q22.1-q22.38 102005665 102624962 RP11-302J23 RP11-262O17 6 0.619297 0.666506294 YWHAZ, ZNF706, GRHL2 q22.38 105072397 106684350 RP11-81A16 RP11-695B4 15 1.611953 0.748878258 RIMS2, TM7SF4, DPYS, LRP12, ZFPM2 q22.3-q23.18 107102544 108572264 RP11-418N24 RP11-543N20 7 1.46972 1.013687871 OXR1, ABRA, ANGPT1 q23.18 118577373 118892781 RP11-494N20 RP11-601K3 4 0.315408 0.605702261 THRAP6, EXT1 q24.118 127851608 128770263 RP11-664D24 RP11-472A17 8 0.918655 0.650562167 q24.219 3501151 3925816 RP11-280F15 RP11-153B18 3 0.424665 0.885669008 RFX3, GLIS3 p24.211 33173657 34296281 RP11-115L22 RP11-567H10 13 1.122624 0.675768703 HIPK3, C11orf69, CD59, FBXO3, LMO2, GPIAP1, NAT10, ABTB2 p1312 67478955 69360061 RP11-611O2 RP11-239F6 23 1.881106 0.918462528 MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR q1516 31955736 32226040 RP11-725H4 RP11-295B6 3 0.270304 0.746411042 V_2210_LC16821_Locke et al. (2006), V_4943_LC16821_Wong et al. (2007), V_4944_LC16821_Wong et al. (2007), V_4945_LC16821_Wong et al. (2007) p11.2

16 32446701 33207033 RP11-618J3 RP11-586K12 5 0.760332 0.794547286 TP53TG3V_0195_LC16821_Iafrate et al. (2004), V_0794_LC16821_Sharp et al. (2005), V_0795_LC16821_Sharp et al. (2005), V_2211_LC16821_Locke et al. (2006), V_2212_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4946_LC16821_Wong et al. (2007) p11.2

17 22334005 24161921 RP11-1432H15 RP11-386F9 16 1.827916 0.663754642WSB1, KSR1, LGALS9, NOS2A, LOC201229, NLK, FLJ40504, TMEM97, IFT20, TNFAIP1, POLDIP2, C17orf32, SEBOX, VTN, SARM1, HCP1, SLC13A2, FOXN1, UNC119, PIGS, ALDOC, SPAG5, FLJ25006, KIAA0100, SDF2, SUPT6H, PROCA1, RAB34,

RPL23A, TLCD1, NEK8, TRAF4, C17orf63 q11.1-q11.217 58982378 60166708 RP11-51F16 CTD-2192A10 22 1.18433 0.814520055 WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2, GH2, CSH1, CSHL1, GH1, CD79B, SCN4A, ICAM2, ERN1, TEX2, PECAM1, POLG2, DDX5, CCDC45, SMURF2 V_0210_LC17626_Iafrate et al. (2004), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007) q23.3-q24.118 1055374 7195350 RP11-357G23 RP11-76K13 58 6.139976 1.157348441 METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3, TTMA, L3MBTL4, ARHGAP28, LAMA1 p11.32-p11.3118 7429708 8371608 RP11-658L2 RP11-386O2 13 0.9419 0.768719851 PTPRM p11.2318 9773830 11195835 RP11-474N24 RP11-571B13 15 1.422005 0.665683575 RAB31, TXNDC2, VAPA, APCDD1, NAPG, FAM38B V_2236_LC17918_Locke et al. (2006) p11.22-p11.2119 32643172 34830341 CTD-2544G22 RP11-35J2 26 2.187169 2.025472934 UQCRFS1, POP4 q1219 35043490 37511959 RP11-354B17 RP11-651A23 29 2.468469 1.743175889 C19orf2, ZNF536, TSHZ3 q12-q13.11

19 42143195 45391137 RP11-619I10 RP11-808D17 39 3.247942 1.117048207

ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, EIF3S12, ACTN4, CAPN12, LGALS7, LOC653499, LGALS4, ECH1, HNRPL, FLJ45909, SIRT2, NFKBIB, SARS2, MRPS12, FBXO17, FBXO27, FLJ16165, PAK4, LOC342897, SYCN, IL28B, IL28A, IL29, GMFG, SAMD4B, PAF1, IXL,

ZFP36, PLEKHG2, RPS16, SUPT5H, TIMM50, DLL3, SELV, EID-3, CRI2, LGALS13, LGALS14, CLC, DYRK1B, FBL, FCGBP, PSMC4, ZNF546, LOC163131, LOC284323, MAP3K10 V_5099_LC18991_Wong et al. (2007) q13.12-q13.219 46693280 47334180 RP11-726N13 RP11-108I20 6 0.6409 0.55128455 CEACAM21, CEACAM4, CEACAM7, CEACAM5, CEACAM6, CEACAM3, LYPD4, DMRTC2, RPS19, CD79A, ARHGEF1, RABAC1, ATP1A3, GRIK5, ZNF574, POU2F2 q13.219 60850445 61136858 RP11-772P23 RP11-368B18 3 0.286413 0.548174699 HSU79303, U2AF2, EPN1, NALP9, NLRP11, NALP4, NALP13 q13.4220 31504647 32417420 RP11-171G22 RP11-313J10 12 0.912773 0.626892868 CBFA2T2, APBA2BP, C20orf144, C20orf134, E2F1, PXMP4, ZNF341, CHMP4B, RALY, EIF2S2, ASIP, AHCY, ITCH q11.2220 36751993 41263012 RP11-663D16 RP11-375L22 39 4.511019 1.062459422 SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, MAFB, TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007) q11.23-q13.1120 43112807 43769989 CTD-2026O20 CTD-2013L23 7 0.657182 0.676178848 STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35, C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13 q13.1220 44153298 45114262 RP11-764O20 CTD-2225N10 9 0.960964 0.549346838 CD40, CDH22, SLC35C2, ELMO2, ZNF334, SLC13A3, TP53RK, SLC2A10, EYA2 q13.12

20 50230284 59760422 RP11-76O3 RP11-429E11 89 9.530138 1.775561826ZFP64, TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4, DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C, BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L,

RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D, C20orf177, CDH26, FLJ33860, LOC284757, CDH4 V_0226_LC19822_Iafrate et al. (2004), V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2-q13.3320 61079458 61347722 RP11-808M16 CTD-2240P21 5 0.268264 0.939490155 BHLHB4, YTHDF1, BIRC7, C20orf58 V_5145_LC19985_Wong et al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al. (2007) q13.3321 42180963 43079126 RP11-771H17 RP11-637P2 9 0.898163 0.670913557 C21orf25, ZNF295, UMODL1, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, TSGA2, SLC37A1, PDE9A q22.3

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands3 151142896 151638691 RP11-687O5 RP11-159D7 6 0.495795 1.091184159 RNF13, PFN2, TSC22D2 q25.18 47199356 47714847 RP11-747K13 RP11-445A15 3 0.515491 0.981894022 V_4590_LC10569_Wong et al. (2007) q11.18 108052988 108572264 RP11-152E10 RP11-543N20 3 0.519276 1.013687871 ANGPT1 q23.118 3752990 4044190 RP11-812N21 RP11-502P1 3 0.2912 1.157348441 DLGAP1 p11.3119 33018635 33356183 RP11-109F17 RP11-638I23 4 0.337548 1.08570633 q1219 42534250 43182219 RP13-515N7 RP11-317L23 8 0.647969 1.071133395 HKR1, ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3 V_5099_LC18991_Wong et al. (2007) q13.12-q13.1319 44635540 45391137 RP11-739P3 RP11-808D17 7 0.755597 1.117048207 SUPT5H, TIMM50, DLL3, SELV, EID-3, CRI2, LGALS13, LGALS14, CLC, DYRK1B, FBL, FCGBP, PSMC4, ZNF546, LOC163131, LOC284323, MAP3K10 q13.220 39114015 39673014 RP11-126O24 RP11-469I22 5 0.558999 1.062459422 TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6 V_5138_LC19665_Wong et al. (2007) q1220 51819457 52786390 RP11-394P23 RP11-706M2 14 0.966933 1.775561826 BCAS1, CYP24A1, PFDN4, DOK5 V_5143_LC19835_Wong et al. (2007) q13.2


OVAS

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 85428966 88012367 RP11-232A18 RP11-121N20 28 2.583401 0.634380921 C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, CLCA3, SH3GLB1, HS2ST1, LMO4 p22.3

1 104503260 117277596 RP11-640J2 RP11-592H23 130 12.774336 1.014256007

PRMT6, NTNG1, VAV3, SLC25A24, FAM102B, C1orf59, PRPF38B, FNDC7, STXBP3, C1orf62, GPSM2, CLCC1, WDR47, TAF13, C1orf119, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5, SYPL2, ATXN7L2, CYB561D1, AMIGO1, GPR61, GNAI3, GNAT2, AMPD2, GSTM4, GSTM2, GSTM1, GSTM5, GSTM3, EPS8L3, CSF1, AHCYL1, FAM40A, ALX3, UBL4B, SLC6A17, KCNC4, RBM15, SLC16A4, HBXIP, PROK1, KCNA10, KCNA2, KCNA3, CD53, C1orf103,

TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C1orf88, OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A, C1orf183, DDX20, KCND3, CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC, PPM1J, FAM19A3, SLC16A1, LRIG2, MAGI3, PHTF1, RSBN1, PTPN22, C1orf178, AP4B1, DCLRE1B, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, DENND2C, AMPD1, NRAS, CSDE1, SIKE, SYCP1, TSHB, TSPAN2, NGFB, VANGL1, CASQ2, NHLH2, SLC22A15, C1orf161,

ATP1A1, CD58, IGSF3, CD2, PTGFRNV_0013_LC0711_Iafrate et al. (2004), V_0682_LC0656_Sharp et al. (2005), V_2049_LC0673_Locke et al. (2006), V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007),


1 120355852 143653121 RP11-754O9 RP11-138C21 16 23.297269 0.900033569 NOTCH2, LOC440607, NBPF20 V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007) p12-q21.1

1 143732648 147166180 RP11-270L7 RP11-52L8 32 3.433532 1.073585296PDE4DIP, SEC22B, NOTCH2NL, HFE2, TXNIP, POLR3GL, ANKRD34, LIX1L, RBM8A, PEX11B, ITGA10, ANKRD35, PIAS3, NUDT17, POLR3C, ZNF364, CD160, PDZK1, FAM108A2, PRKAB2, FMO5, CHD1L, BCL9, ACP6, GJA5, GJA8,

GPR89A, NBPF11, NBPF14, NBPF10, NBPF15V_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007),


1 150229090 151649639 RP11-212D5 RP11-252O16 14 1.420549 1.026280369S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN, LCE5A, C1orf42, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4,

SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8 q21.3

1 155185068 198528036 RP11-341K5 RP11-186C3 397 43.342968 0.896252695

ARHGEF11, FLJ16478, ETV3, FCRL5, FCRL4, FCRL3, FCRL2, FCRL1, CD5L, KIRREL, CD1D, CD1A, CD1C, CD1B, CD1E, OR10T2, OR10K2, OR10K1, OR10R2, OR6Y1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, IFI16, AIM2, IGSF4B, DARC, FCER1A, OR10J3, OR10J1, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, VSIG8, CCDC19, TAGLN2, IGSF9, SLAMF9, PIGM, KCNJ10, KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1,

PEA15, WDR42A, PEX19, COPA, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, ITLN2, F11R, USF1, ARHGAP30, PVRL4, KARCA1, PFDN2, NIT1, DEDD, UFC1, USP21, PPOX, B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, NR1I3, MPZ, SDHC, C1orf192, FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2, DUSP12, ATF6, OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52, MGST3, ALDH9A1, TMCO1, UCK2, FAM78B, POGK, TADA1L, C1orf32, MAEL, GPA33, DUSP27, POU2F1, CD247, CREG1, RCSD1,

MPZL1, SAC, BRP44, IQWD1, GPR161, TIPRL, SFT2D2, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BLZF1, C1orf114, SLC19A2, F5, SELP, SELL, SELE, C1orf156, C1orf112, SCYL3, KIFAP3, SCYL1BP1, PRRX1, C1orf129, FMO3, FMO2,

V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al. (2006), V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007), V_4264_LC0975_Wong et al. (2007), V_4265_LC0992_Wong et al. (2007),

V_4266_LC1019_Wong et al. (2007) q23.1-q32.1

1 203078080 209105816 RP11-621K12 RP11-159M4 60 6.027736 1.061238183

NFASC, CNTN2, TMEM81, RBBP5, RIPK5, TMCC2, NUAK2, KLHDC8A, LEMD1, PCTK3, MFSD4, ELK4, SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569, SLC26A9, AVPR1B, C1orf186, CTSE, SRGAP2, IKBKE, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CD46, CD34, PLXNA2, CAMK1G, LAMB3, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14, SERTAD4,

HHAT, KCNH1 V_2091_LC1120_Locke et al. (2006), V_4268_LC1117_Wong et al. (2007), V_4269_LC1125_Wong et al. (2007) q32.1-q32.2

1 211271151 224035242 RP11-229M5 RP11-14D1 123 12.764091 1.307334919RPS6KC1, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, LOC128153, RRP15, TGFB2, LYPLAL1, SLC30A10, EPRS, BPNT1, IARS2, RAB3GAP2, MARK1, C1orf115, MOSC2, MOSC1, HLX1, C1orf140,

DUSP10, KIAA1822L, TAF1A, MIA3, C1orf80, C1orf58, FLJ43505, DISP1, TLR5, SUSD4, C1orf65, CAPN2, TP53BP2, FBXO28, DEGS1, NVL, CNIH4, WDR26, CNIH3, LBR, ENAH, SRP9 V_4270_LC1176_Wong et al. (2007) q32.3-q42.12

1 225570573 246944046 CTD-2090I13 RP11-378I20 213 21.373473 1.220682528

CDC42BPA, ZNF678, JMJD4, C1orf142, MPN2, WNT9A, WNT3A, ARF1, C1orf35, MRPL55, GUK1, GJA12, C1orf69, OBSCN, TRIM11, TRIM17, HIST3H3, HIST3H2A, HIST3H2BB, RHOU, RAB4A, SPHAR, C1orf96, ACTA1, NUP133, ABCB10, TAF5L, KIAA0133, GALNT2, PGBD5, COG2, AGT, CAPN9, C1orf198, TTC13, ARV1, FAM89A, TRIM67, C1orf131, GNPAT, EXOC8, C1orf124, EGLN1, TSNAX, DISC1, SIPA1L2, C1orf57, PCNXL2, KIAA1804, KCNK1, SLC35F3, C1orf31, TARBP1, IRF2BP2, TOMM20, RBM34, ARID4B, GGPS1, TBCE, B3GALNT2, GNG4, LYST, NID1, GPR137B, ERO1LB, EDARADD, LGALS8, HEATR1, ACTN2, MTR, LOC645745, RYR2, ZP4, CHRM3, FMN2, GREM2, RGS7, FH,

KMO, OPN3, CHML, WDR64, EXO1, MAP1LC3C, PLD5, CEP170, SDCCAG8, AKT3, ZNF238, LOC440742, C1orf100, ADSS, C1orf101, C1orf121, FAM36A, HNRPU, EFCAB2, KIF26B, SMYD3, TFB2M, C1orf71, SCCPDH, AHCTF1, ZNF695, ZNF670, ZNF669, FLJ45717, ZNF124, VN1R5, ZNF496, NLRP3, CIAS1, OR2B11, OR2W5, OR2C3, C1orf150, OR2G2, OR2G3, OR13G1, OR6F1, OR5AY1, OR1C1, OR5AT1, OR11L1, TRIM58, OR2W3, OR2T8, OR2L13, OR2L8, OR2AK2,

OR2L2, OR2L3, OR2M5, OR2M2, OR2M3, OR2M4, OR2T33, OR2T12, OR2M7, OR5BF1, OR2T4, OR2T6, OR2T1, OR2T2, OR2T3, OR2T5, OR2G6, OR2T29, OR2T34, OR2T10, OR2T11, OR2T35, OR2T27, OR5BU1 V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006), V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et al. (2007) q42.13-q44

2 15568874 91033058 RP11-422A6 RP11-707D4 738 75.464184 1.015463562

NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3, GDF7, C2orf43, APOB, UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4, FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI, MGC16372, OTOF, CIB4, KCNK3, C2orf18, CENPA, DPYSL5, MAPRE3, FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172,

FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE, FOSL2, PLB1, PPP1CB, SPDY1, FLJ20628, LOC165186, FLJ34931, RSNL2, ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH, SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A, CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3,

FAM82A, CYP1B1, MGC34824, ARL6IP2, HNRPLL, GALM, SFRS7, GEMIN6, DHX57, SOS1, CDKL4, MAP4K3, MGC33926, THUMPD2, SLC8A1, LOC91461, EML4, COX7A2L, KCNG3, MTA3, OXER1, HAAO, ZFP36L2, THADA, PLEKHH2, DYNC2LI1, ABCG5, ABCG8, LRPPRC, PPM1B, SLC3A1, PREPL, C2orf34, SIX3, SIX2, FLJ10379, PRKCE, EPAS1, ATP

V_0018_LC1749_Iafrate et al. (2004), V_0019_LC1897_Iafrate et al. (2004), V_0020_LC1992_Iafrate et al. (2004), V_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006),V_4275_LC1625_Wong et al. (2007), V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et al. (2007), V_4282_LC1766_Wong et al. (2007), V_4283_LC1814_Wong et al. (2007), V_4284_LC1832_Wong et al. (2007), V_4285_LC1867_Wong et al. (2007), V_4286_LC1888_Wong et al. (2007), V_4287_LC1900_Wong et al. (2007), V_4288_LC1904_Wong et al. (2007), V_4289_LC1968_Wong et al. (2007), V_4290_LC1992_Wong et al. (2007), V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et al. (2007), V_4293_LC2035_Wong et al. (2007), V_4294_LC2035_Wong et al. (2007), V_4295_LC2046_Wong et al. (2007), V_4296_LC2046_Wong et al. (2007), V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007), V_0373_LC2046_Bejjani et al. (2005) p24.3-p11.1

2 91607653 95017226 RP13-573F8 RP11-327M19 6 3.409573 0.440949465 TEKT4 p11.1-q11.12 131995571 132831332 RP11-433A19 RP11-259G19 10 0.835761 0.543032871 CCDC74A, FKSG30, C2orf27, MGC50273, FLJ41821 V_0025_LC2234_Iafrate et al. (2004), V_4307_LC2234_Wong et al. (2007) q21.1-q21.22 151816885 152156197 RP11-311L3 RP11-600C17 3 0.339312 0.617412484 FLJ45645, NMI, TNFAIP6, RIF1, NEB q23.33 12796917 13342737 RP11-548H7 RP11-764F12 4 0.54582 0.356030459 CAND2, RPL32, IQSEC1, NUP210 p25.1

3 128748033 199446704 RP11-109F7 RP11-652A1 697 70.698671 1.148557404

GPR175, MCM2, PODXL2, ABTB1, MGLL, KLHDC6, SEC61A1, RUVBL1, EEFSEC, DNAJB8, GATA2, C3orf27, RPN1, RAB7, ACAD9, CCDC48, GP9, RAB43, ISY1, CNBP, COPG, C3orf37, H1FX, C3orf25, MBD4, IFT122, RHO, H1FOO, PLXND1, TMCC1, TRH, ARVP6125, FLJ35880, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBE1DC1, NPHP3, TMEM108, BFSP2, CDV3, TOPBP1, TF, SRPRB, RAB6B, C3orf36, SLCO2A1, RYK, AMOTL2, ANAPC13, CEP63, KY, EPHB1, PPP2R3A, MSL2L1, PCCB, STAG1, TMEM22, NCK1, FNDC6, SOX14, CLDN18, DZIP1L, A4GNT, DBR1, ARMC8, TXNDC6, MRAS, FAM62C, CEP70, FAIM, PIK3CB, FOXL2, LOC389151, FLJ46210, MRPS22, COPB2, RBP2, RBP1, NMNAT3, CLSTN2, TRIM42, SLC25A36, SPSB4, ACPL2, ZBTB38, RASA2, RNF7, GRK7, ATP1B3, TFDP2, MGC40579, XRN1, ATR, PLS1, TRPC1, PCOLCE2, PAQR9, SR140, CHST2, SLC9A9, C3orf58, PLOD2, PLSCR4, PLSCR2, PLSCR1, ZIC4, ZIC1, AGTR1, CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2, TSC22D2, SERP1, EIF2A, SELT, C3orf44,

SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ, SCHIP1, IL12A, IFT80

V_0036_LC3666_Iafrate et al. (2004), V_0037_LC3745_Iafrate et al. (2004), V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_0040_LC3895_Iafrate et al. (2004), V_0042_LC4028_Iafrate et al. (2004), V_0043_LC4057_Iafrate et al. (2004), V_0044_LC4057_Iafrate et al. (2004), V_0696_LC4028_Sharp et al. (2005), V_0697_LC4028_Sharp et al.(2005), V_2062_LC4004_Locke et al. (2006), V_2063_LC4020_Locke et al. (2006), V_2064_LC4028_Locke et al. (2006), V_2065_LC4028_Locke et al. (2006), V_4353_LC3617_Wong et al. (2007), V_4354_LC3619_Wong et al. (2007), V_4355_LC3723_Wong et al. (2007), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007), V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et al. (2007), V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007), V_4363_LC3872_Wong et al. (2007), V_4364_LC3931_Wong et al. (2007), V_4365_LC3931_Wong et al. (2007), V_4366_LC4028_Wong et al. (2007), V_4367_LC4028_Wong et al. (2007), V_4368_LC4048_Wong et al.

(2007), V_4369_LC4050_Wong et al. (2007), V_4370_LC4057_Wong et al. (2007) q21.3-q29

5 72312 133361212 RP11-811I15 RP11-582N19 1667 133.2889 1.147680064

KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4, IRX2, CEI, IRX1,ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2, DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152,

MYO10, BASP1, CDH18, CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN, FLJ11193, PDZD2, GOLPH3, MTMR12, ZFR, SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBL, FLJ13231, NUP155, WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33,

PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1, LOC389289, ZNF131, MGC42105, HMGCS1, CCL28, FLJ21657, FLJ32363, PAIP1, NNT, FGF10, MRPS30, LOC441070, HCN1, EMB, PARP8, ISL1, PELO, ITGA1, ITGA2, MOCS2, FST, NDUFS4, ARL15, HSPB3, SNAG1, ESM1, GZMK, GZMA, FLJ37927, LOC493869, UNG2, DHX29, SKIV2L2, PPAP2A, FLJ90709, DDX4, IL31RA, IL6ST, FLJ11795, MGC33648, MIER3,

GPBP1, DKFZp686D097, PLK2, C5orf29, RAB3C, PDE4D, DEPDC1B, ELOVL7, ERCC8, NDUFA12L, DKFZP686E215, F

V_0061_LC6634_Iafrate et al. (2004), V_0062_LC6809_Iafrate et al. (2004), V_0063_LC6852_Iafrate et al. (2004), V_0064_LC7017_Iafrate et al. (2004), V_0065_LC7090_Iafrate et al. (2004), V_0066_LC7143_Iafrate et al. (2004), V_0067_LC7505_Iafrate et al. (2004), V_0704_LC6379_Sharp et al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_0710_LC7017_Sharp et al. (2005), V_0711_LC7017_Sharp et al. (2005), V_0712_LC7231_Sharp et al. (2005), V_0713_LC7239_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_2082_LC6572_Locke et al. (2006), V_2083_LC6669_Locke et al. (2006), V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_2088_LC7017_Locke et al. (2006), V_2089_LC7017_Locke et al.

(2006), V_2090_LC7239_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007), V_4427_LC p15.33-q31.15 134312306 137293232 RP11-757O10 RP11-737H3 59 2.980926 0.731752105 PCBD2, CATSPER3, PITX1, H2AFY, C5orf20, NEUROG1, CXCL14, LOC153328, IL9, FBXL21, LECT2, TGFBI, SMAD5, TRPC7, SPOCK1, KLHL3, HNRPA0, MYOT, PKD2L2 V_4479_LC7555_Wong et al. (2007) q31.1-q31.2

5 141983446 171487291 RP11-550D4 CTD-2014L18 306 29.503845 0.771539152

FGF1, ARHGAP26, NR3C1, HB-1, YIPF5, KCTD16, MGC21644, LOC643226, SH3RF2, PLAC8L1, LARS, POU4F3, TCERG1, GPR151, PPP2R2B, STK32A, DPYSL3, JAKMIP2, SPINK1, SCGB3A2, MGC23985, SPINK5, SPINK5L2, SPINK6, SPINK5L3, SPINK7, SPINK9, FBXO38, HTR4, ADRB2, SH3TC2, ABLIM3, FLJ36748, GRPEL2, MGC3265, IL17B, CSNK1A1, FLJ41603, PPARGC1B, PDE6A, SLC26A2, TIGD6, CSF1R, PDGFRB, CDX1, SLC6A7, CAMK2A, ARSI, TCOF1, CD74, RPS14, NDST1, SYNPO, MYOZ3, RBM22, DCTN4, MST150, ZNF300, GPX3, TNIP1, ANXA6, CCDC69, GM2A, SLC36A3, SLC36A2, SLC36A1, FAT2, SPARC, ATOX1, G3BP, GLRA1, NMUR2, GRIA1, C5orf3, MFAP3, GALNT10, SAP30L, HAND1, LARP1, C5orf4, CNOT8, GEMIN5, MRPL22, SGCD, TIMD4, HAVCR1, HAVCR2, CRSP9, FAM71B, ITK, CYFIP2, MGC27121, ADAM19, SOX30, ICF45, LSM11, ENTH, EBF, FLJ31951, UBLCP1, IL12B, ADRA1B, TTC1, FABP6, CCNJL, C1QTNF2, LOC63920, SLU7, PTTG1, GABRB2, GABRA6, GABRA1, GABRG2, CCNG1, NUDCD2, HMMR, MAT2B, ODZ2, WWC1, RARS, PANK3, SLIT3, CCDC99, DOCK2, FOXI1, LCP2, KCNMB1, KCNIP1, GABRP,

RANBP17, TLX3, NPM1, FGF18, FBXW11, STK10 q31.3-q35.15 172672120 175679466 RP11-417I20 RP11-676M23 49 3.007346 0.533160631 STC2, FAM44B, CPEB4, HMP19, MSX2, DRD1, SFXN1, HRH2, CPLX2, LOC202134, C5orf25 V_2092_LC7866_Locke et al. (2006) q35.2

7 6324338 32352729 RP11-437P5 RP11-795A23 250 26.028391 2.536435835

MGC12966, RAC1, LOC221955, KDELR2, ZDHHC4, C7orf26, ZNF12, LOC222967, C7orf28B, C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631, NDUFA4, PHF14, TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7,

DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9, NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2,

INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16, PDE1C

V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_2099_LC9264_Locke et al. (2006), V_4525_LC9277_Wong et al.

(2007), V_4526_LC9320_Wong et al. (2007), V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007), V_4529_LC9384_Wong et al. (2007) p22.1-p14.3

7 45353497 57218617 RP11-565B21 RP11-267N21 111 11.86512 0.826759141ADCY1, IGFBP1, IGFBP3, LOC641980, TNS3, PKD1L1, FLJ21075, HUS1, SUNC1, UPP1, ABCA13, VWC2, ZPBP, ZNFN1A1, FIGNL1, DDC, GRB10, COBL, DKFZp564N247, FLJ45974, MGC33530, SEC61G, EGFR, LANCL2, ECOP,

FKBP9L, FLJ44060, ZNF713, MRPS17, GBAS, PSPH, CCT6A, SUMF2, PHKG1, CHCHD2, LOC401357 V_0720_LC9535_Sharp et al. (2005), V_4534_LC9482_Wong et al. (2007), V_4535_LC9486_Wong et al. (2007), V_4536_LC9495_Wong et al. (2007), V_4537_LC9518_Wong et al. (2007) p13-p11.2

7 61730350 62539297 CTD-2420F24 RP11-1268A5 7 0.808947 0.329450825 V_0104_LC9545_Iafrate et al. (2004), V_0721_LC9545_Sharp et al. (2005), V_2100_LC9545_Locke et al. (2006), V_4540_LC9545_Wong et al. (2007), V_0375_LC9545_Bejjani et al. (2005) q11.21

7 63041297 104899737 CTD-2143G24 RP11-708P17 444 41.85844 0.683013195

ZNF680, ZNF588, ZNF138, ZNF273, ZNF117, ZNF92, VKORC1L1, GUSB, ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24, RHBDD2, POR, TMPIT, STYXL1, MDH2, FLJ37078,

HSPB1, YWHAG, SRCRB4D, ZP3, DTX2, UPK3B, POMZP3, KIAA1505, FGL2, LOC54103, PTPN12, RSBN1L, TMEM60, PHTF2, MAGI2, MGC34774, GNAI1, CD36, SEMA3C, HGF, CACNA2D1, SEMA3E, SEMA3A, SEMA3D, GRM3, KIAA1324L, DMTF1, C7orf23, CROT, ABCB4, ABCB1, RPIB9, MCFP, DBF4, ADAM22, SRI, STEAP4, FLJ32110, MGC26647, STEAP1, STEAP2, FLJ21062, DKFZP686A101, CLDN12, PFTK1, FZD1, MTERF, AKAP9, CYP51A1, LOC401387, KRIT1, GATAD1, PEX1, DKFZP564O052, MGC40405, CDK6, SAMD9, SAMD9L, LOC253012, FLJ20097, CALCR, TFPI2, GNGT1, GNG11, BET1, COL1A2, CASD1, SGCE, PEG10, PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, DYNC1I1,

V_0105_LC9667_Iafrate et al. (2004), V_0106_LC9682_Iafrate et al. (2004), V_0107_LC9766_Iafrate et al. (2004), V_0722_LC9554_Sharp et al. (2005), V_0723_LC9631_Sharp et al. (2005),V_0724_LC9769_Sharp et al. (2005), V_2101_LC9554_Locke et al. (2006), V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_2104_LC9753_Locke et al. (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007), V_4545_LC9609_Wong et al. (2007), V_4546_LC9689_Wong et al. (2007), V_4547_LC9750_Wong et al. (2007), V_4548_LC9750_Wong et al. (2007), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_4551_LC9756_Wong et al. (2007), V_4552_LC9762_Wong et al. (2007), V_4553_LC9769_Wong et al. (2007) q11.21-q22.2

7 110250826 114533539 RP11-495O8 RP11-695F7 36 4.282713 1.057735382 IMMP2L, LRRN3, DOCK4, ZNF277P, IFRD1, FLJ39575, FLJ13576, FLJ31818, GPR85, PPP1R3A, FOXP2, MDFIC V_0108_LC9826_Iafrate et al. (2004) q31.1-q31.2

7 150155467 158806092 RP11-445P2 RP13-1052O2 98 8.650625 0.610825019ABP1, KCNH2, NOS3, ATG9B, ABCB8, ACCN3, CDK5, SLC4A2, FASTK, C7orf21, CENTG3, ASB10, ABCF2, CSGlcA-T, SMARCD3, NYREN18, LOC349136, CRYGN, RHEB, PRKAG2, GALNTL5, GALNT11, MLL3, LOC155100, XRCC2,

ACTR3B, FLJ16734, DPP6, PAXIP1, HTR5A, INSIG1, EN2, PRR8, RBM33, SHH, LOC641940, RNF32, LMBR1, NOM1, HLXB9, UBE3C, DNAJB6, LOC641948, PTPRN2, NCAPG2, FAM62B, WDR60, VIPR2V_0111_LC10099_Iafrate et al. (2004), V_0729_LC10082_Sharp et al. (2005), V_0730_LC10082_Sharp et al. (2005), V_2111_LC10082_Locke et al. (2006), V_4574_LC10061_Wong et al.

(2007) q36.1-q36.3

8 47199356 146242964 RP11-747K13 CTD-2405B17 834 99.043608 1.013687871

KIAA0146, CEBPD, PRKDC, MCM4, UBE2V2, EFCAB1, SNAI2, C8orf22, SNTG1, PXDNL, PCMTD1, ST18, UNQ9433, RB1CC1, NPBWR1, OPRK1, ATP6V1H, RGS20, TCEA1, LYPLA1, MRPL15, SOX17, RP1, XKR4, TMEM68, NCOA6IP, LYN, RPS20, MOS, PLAG1, CHCHD7, RDHE2, PENK, IMPAD1, C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX, CA8, RAB2, CHD7, MGC34646, ASPH, FAM77D, FLJ39198, GGH, TTPA, YTHDF3, BHLHB5, CYP7B1, ARMC1,

MTFR1, PDE7A, DNAJC5B, TRIM55, CRH, RRS1, ADHFE1, C8orf46, MYBL1, VCPIP1, C8orf44, SGK3, C8orf45, LOC286187, COPS5, CSPP1, ARFGEF1, CPA6, DEPDC2, C8orf34, SULF1, SLCO5A1, PRDM14, NCOA2, TRAM1, LACTB2, XKR9, EYA1, MSC, TRPA1, KCNB2, TERF1, RPESP, RPL7, RDH10, STAU2, UBE2W, TCEB1, TMEM70, LY96, JPH1, GDAP1, PI15, CRISPLD1, HNF4G, ZFHX4, PXMP3, PKIA, C8orf70, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10,

ZNF704, PAG1, FABP5, PMP2, PERF15, FABP4, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16, LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1, WDR21C, MMP16, RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64, EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1, RBM12B, TMEM67, PPM2C, CDH17, GEM, RAD54B, KIAA1429, RBM35A, DPY19L4, INTS8, CCNE2, TP53INP1,

C8orf38, PLEKHF2, C8orf37, GDF6, UQCRB, MTERFD1, PTDSS1, SDC2, PGCP, TSPYL5, MTDH, LAPTM4B, MATN2, R

V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4590_LC10569_Wong et al. (2007), V_4591_LC10578_Wong et al. (2007), V_4592_LC10583_Wong et al. (2007), V_4593_LC10587_Wong et al. (2007), V_4594_LC10611_Wong

et al. (2007), V_4595_LC10619_Wong et al. (2007), V_4596_LC10633_Wong et al. (2007), V_4597_LC10634_Wong et al. (2007), V_4598_LC10640_Wong et al. (2007), V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al.

(2007), V_4604_LC10727_Wong et al. (2007), V_4605_LC10727_Wong et al. (2007), V_4606_LC10731_Wong et al. (2007), V_4607_LC10749_Wong et al. (2007), V_4608_LC10811_Wong et al. (2007), V_4609_LC10877_Wong et al. (2007), V_4610_LC10912_Wong et al. (2007), V_4611_LC10941_Wong et al. (2007), V_4612_LC10994_Wong et al. (2007),

V_4613_LC11006_Wong et al. (2007), V_4614_LC11012_Wong et al. (2007), V_4791_LC10979_Wong et al. (2007) q11.1-q24.39 29038 152739 RP11-143M1 CTD-2135F5 3 0.123701 0.535688672 FOXD4, CBWD1 p24.39 37229857 37570487 RP11-777A17 RP11-101J1 4 0.34063 0.354088883 ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10 p13.2

9 38860163 46096928 RP11-475B17 RP13-514P24 30 7.236765 0.685599593 CNTNAP3, LOC642265, LOC727830, ZNF658, ZNF658B, ANKRD20A2

V_0742_LC11330_Sharp et al. (2005), V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp

et al. (2005), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. (2006), V_2131_LC11330_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al.

(2006), V_2140_LC11330_Locke et al. (2006), V_2142_LC11330_Locke et al. (2006), V_2143_LC11330_Locke et al. (2006), V_2149_LC11330_Locke et al. (2006), V_4619_LC11330_Wong et al. (2007), V_4620_LC11330_Wong et al. (2007), V_4621_LC11330_Wong et al. (2007), V_4622_LC11330_Wong et al. (2007), V_4623_LC11330_Wong et al. (2007),

V_4624_LC11330_Wong et al. (2007), V_4626_LC11330_Wong et al. (2007), V_4627_LC11330_Wong et al. (2007), V_4628_LC11330_Wong et al. (2007), V_4629_LC11330_Wong et al. (2007), V_4631_LC11330_Wong et al. (2007), V_4632_LC11330_Wong et al. (2007), V_4633_L p13.1-p11.2

9 68280728 70234204 RP11-365K10 RP11-211E19 9 1.953476 0.436167687 LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5

V_0751_LC11344_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_2139_LC11344_Locke et al. (2006), V_2141_LC11344_Locke et al. (2006), V_2144_LC11344_Locke et al. (2006), V_2146_LC11344_Locke et al. (2006), V_2148_LC11344_Locke et al. (2006), V_2150_LC11344_Locke et al. (2006), V_2151_LC11344_Locke et al. (2006), V_4642_LC11344_Wong

et al. (2007) q12-q1312 4304288 5919344 RP11-8E2 RP11-570D10 14 1.615056 0.579858111 C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B p13.32-p13.31

12 8486385 16867391 RP11-561P12 RP11-140N13 72 8.381006 0.648155491

CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, FAM80B, A2ML1, PHC1, M6PR, KLRG1, C12orf33, A2M, PZP, KLRB1, CLEC2D, DCAL1, CD69, KLRF1, CLEC2B, CLEC12A, CLEC1B, CLEC12B, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRK1, KLRC4, KLRC3, KLRC2, KLRC1, KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4, PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19, CDKN1B, APOLD1, DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP,

FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4, MGP, C12orf46, ARHGDIB, PDE6H, RERG, PTPRO, EPS8, STRAP, DERA, MGST1, LMO3 V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007) p13.31-p12.3

12 21048791 47322951 RP11-535M24 RP11-683J24 263 26.27416 0.821202436

LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5, FLJ32894, BCAT1, LRMP, CASC1, LYRM5, KRAS, FLJ36004, RASSF8, BHLHB3, SSPN, ITPR2, C12orf11, FGFR1OP2, TM7SF3, SURB7, LOC728858, STK38L, ARNTL2, PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH, CCDC91, MLSTD1, ERGIC2, OVCH1, TMTC1, IPO8, C1QDC1, TSPAN11, DDX11, OVOS2, FAM60A, MGC24039, MGC50559, LOC196394, LOC440093, C12orf35, BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1,

ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4, AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA

V_0163_LC13898_Iafrate et al. (2004), V_2170_LC13972_Locke et al. (2006), V_4772_LC13891_Wong et al. (2007), V_4773_LC13907_Wong et al. (2007), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007) p12.2-q13.11

12 49982872 51651633 RP11-24J24 RP11-153F5 19 1.668761 0.48586237BIN2, ELA1, GALNT6, SLC4A8, SCN8A, LOC401720, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRTHB1, KRTHB6, KRTHB3, KRT85, KRTHB4, KRTHB2, K6HF, KRT6B, KRT6C, KRT6A, KRT5, KRT6IRS,

K6IRS4, K6IRS2, K6IRS3, KRT2A, KRT1, KRT1B, KRT76, KRT3, KRT4, KRT6L, K5B, KRT8, KRT18 V_4778_LC14057_Wong et al. (2007) q13.13

12 52494400 54469906 RP11-84N2 RP11-762I7 24 1.975506 0.56532176HOXC13, HOXC12, HOXC11, HOXC10, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, SMUG1, CBX5, HNRPA1, NFE2, COPZ1, GPR84, ZNF385, ITGA5, FAM112B, NCKAP1L, PDE1B, PPP1R1A, LACRT, DCD, SBEM, NEUROD4, OR9K2,

OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4, OR10P1, METTL7B, ITGA7, BLOC1S1, RDH5, CD63, GDF11, CIP29 V_4780_LC14080_Wong et al. (2007) q13.13-q13.2

12 56499167 94910947 RP11-277A2 RP11-326P6 401 38.41178 1.011322948

CTDSP2, XRCC6BP1, LRIG3, SLC16A7, FAM19A2, USP15, MON2, C12orf61, AVPR1A, DPY19L2, TMEM5, SRGAP1, FLJ32549, XPOT, TBK1, RASSF3, GNS, WIF1, LEMD3, MSRB3, HMGA2, C12orf31, TMBIM4, IRAK3, HELB, GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B, NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, PSRC2, THAP2,

TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1,

CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1, NUDT4, UBE2N, MRPL42, SOCS2, CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT, METAP2, USP44, NTN4, SNRPF, CCDC38, AMDHD1, HALV_0165_LC14278_Iafrate et al. (2004), V_2171_LC14120_Locke et al. (2006), V_4774_LC14229_Wong et al. (2007), V_4781_LC14179_Wong et al. (2007), V_4782_LC14235_Wong et al.

(2007), V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007), V_4785_LC14298_Wong et al. (2007) q14.1-q23.1

12 95902696 106773946 RP11-393I3 RP11-226B9 102 10.87125 0.617488476

TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, TMEM16D, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM, CCDC53, NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1, C12orf42, STAB2, NT5DC3, HSP90B1, TDG, GLT8D2, HCFC2, NFYB, TXNRD1, EID3, CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NUAK1, CKAP4, TCP11L2, POLR3B, RFX4, RIC8B,

C12orf23, MTERFD3, CRY1, BTBD11, PWP1, PRDM4, ASCL4 V_4786_LC14380_Wong et al. (2007) q23.1-q23.312 111588013 115670868 RP11-709L11 RP11-678H6 47 4.082855 0.488516386 RPH3A, OAS1, OAS3, OAS2, DTX1, RASAL1, DDX54, C12orf52, IQCD, TPCN1, SLC24A6, LOC196463, SDS, SDSL, LHX5, RBM19, TBX5, TBX3, THRAP2, FLJ42957, C12orf49, TMEM118 V_4787_LC14460_Wong et al. (2007), V_4788_LC14466_Wong et al. (2007) q24.13-q24.2212 115923554 116594627 RP11-583N20 CTD-2005M8 11 0.671073 0.451895839 FBXW8, TESC, FBXO21, NOS1, KSR2 V_4789_LC14468_Wong et al. (2007) q24.2212 117205287 118720660 RP11-605A10 RP11-778G11 18 1.515373 0.460068761 TAOK3, SUDS3, KIAA1853, HSPB8, CCDC60, PRKAB1, CIT q24.23

12 121817091 132289529 RP11-32O4 CTD-2140B24 100 10.472438 0.797116193

DENR, CCDC62, HIP1R, VPS37B, ABCB9, OGFOD2, ARL6IP4, PITPNM2, MPHOSPH9, C12orf65, CDK2AP1, SBNO1, SETD8, MGC7036, U1SNRNPBP, FLJ39378, TMED2, DDX55, EIF2B1, GTF2H3, C12orf38, ATP6V0A2, DNAH10, CCDC92, ZNF664, FAM101A, NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS, TMEM132B, SLC15A4, GLT1D1, TMEM132D, FZD10, PIWIL1, RIMBP2, EPIM, RAN, GPR133, SFRS8, MMP17, ULK1, PUS1, EP400, DDX51, NOC4L, GALNT9,

P2RX2, POLE, PXMP2, PGAM5, GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10, ZNF268V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. (2006), V_4404_LC14595_Wong et al. (2007), V_4790_LC14504_Wong et al. (2007), V_4792_LC14514_Wong et al.

(2007), V_4793_LC14538_Wong et al. (2007), V_4794_LC14556_Wong et al. (2007), V_4795_LC14556_Wong et al. (2007), V_4796_LC14595_Wong et al. (2007) q24.31-q24.3315 22776522 23368074 RP11-732F4 RP11-479F18 6 0.591552 0.343673145 UBE3A V_0183_LC16121_Iafrate et al. (2004) q11.2-q1215 25961165 27361253 RP11-142A11 RP11-288P10 9 1.400088 0.326965006 OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2 V_0778_LC16139_Sharp et al. (2005), V_4876_LC16139_Wong et al. (2007), V_4882_LC16139_Wong et al. (2007), V_4883_LC16139_Wong et al. (2007) q13.1

15 28366411 30848193 RP11-336F16 RP11-1203N1 25 2.481782 0.446463994 CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1

V_0185_LC16139_Iafrate et al. (2004), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke

et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_4886_LC16139_Wong et al. (2007), V_4887_LC16139_Wong et al. (2007), V_4888_LC16139_Wong et al. (2007), V_4889_LC16139_Wong et al. (2007), V_4890_LC16139_Wong et al. (2007), V_4891_LC16139_Wong et al. (2007), V_4892_LC16139_Wong et al.

(2007), V_4893_LC16139_Wong et al. (2007), V_4894_LC16139_Wong et al. (2007) q13.2-q13.317 21609201 22127824 RP11-797J12 RP11-399C2 6 0.518623 0.437348053 FAM27L V_4998_LC17406_Wong et al. (2007) p11.2-p11.1

17 23642262 25127880 RP11-301H1 RP11-289I5 11 1.485618 0.569469044FLJ40504, TMEM97, IFT20, TNFAIP1, POLDIP2, C17orf32, SEBOX, VTN, SARM1, HCP1, SLC13A2, FOXN1, UNC119, PIGS, ALDOC, SPAG5, FLJ25006, KIAA0100, SDF2, SUPT6H, PROCA1, RAB34, RPL23A, TLCD1, NEK8, TRAF4,

C17orf63, ERAL1, FLOT2, MGC23280, PHF12, SEZ6, PIPOX, MYO18A, TIAF1, CRYBA1, NUFIP2, TAOK1, LOC116236, TP53I13, GIT1, ANKRD13B, CORO6, SSH2 q11.2

17 28757686 41793763 RP11-660E6 RP11-193J3 143 13.036077 1.042607643

ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, FLJ44815, TMEM132E, CCT6B, CCDC16, LIG3, RFFL, RAD51L3, FNDC8, NLE1, UNC45B, AMAC1, SLFN5, FLJ34922, FLJ10260, SLFN13, PEX12, AP2B1, RASL10B, GAS2L2, C17orf50, MMP28, TAF15, C17orf66, CCL5, RDM1, LYZL6, CCL16, CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, CCL3L1, CCL3L3, CCL4L1, CCL4L2, TBC1D3C, LOC654341, ZNHIT3, MYOHD1, PIGW, ZNF403, MGC4172, MRM1, LHX1, AATF, ACACA, C17orf78, TADA2L, DUSP14, AP1GBP1, DDX52, TCF2, TBC1D3B, TBC1D3, MRPL45, GPR179, SOCS7, SNIP, MLLT6, PCGF2, PSMB3, PIP5K2B, CCDC49, LOC388381, RPL23, LASP1, FBXO47, PLXDC1, CACNB1, RPL19,

STAC2, FBXL20, PPARBP, CRKRS, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, ZNFN1A3, ZPBP2, GSDML, ORMDL3, GSDM1, PSMD3, CSF3, THRAP4, THRA, NR1D1, CASC3, RAPGEFL1, WIRE, CDC6, RARA, GJC1, TOP2A, IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A, KRTHA3B, KRTHA4, KRTHA1, KRTHA7, KRTHA8, KRT32, KRTHA5, KRTHA6,

KRT13, KRT15, KRT19, KRT9, KRT14, KRT16, KRT17, EIF1, GAST, HAP1, JUP, SC65, FKBP10, NT5C3L, KLHL10, KLH

V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004), V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_2220_LC17457_Locke et al. (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. (2006), V_2223_LC17457_Locke

et al. (2006), V_2224_LC17457_Locke et al. (2006), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_5001_LC17457_Wong et al. (2007), V_5002_LC17457_Wong et al. (2007), V_5003_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al.

(2007), V_5006_LC17473_Wong et al. (2007), V_5007_LC17508_Wong et al. (2007), V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et al. (2007), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007), V_5012_LC17522_Wong et al. (2007) q11.2-q21.31

17 42157798 73688507 RP11-360B17 RP11-652L14 369 31.530709 2.00166997

NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1, SNX11, SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13, TTLL6, CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB, NGFR, NXPH3, SPOP, SLC35B1,

LOC81558, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2, MBTD1, UTP18, CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1,

ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1, CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2, MRC2, RNF190, CYB561, ACE, KCNH6, WDR68,

CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2, GH2, CSH1, CSHL1, GH1, CD7

V_0207_LC17522_Iafrate et al. (2004), V_0208_LC17538_Iafrate et al. (2004), V_0209_LC17565_Iafrate et al. (2004), V_0210_LC17626_Iafrate et al. (2004), V_0211_LC17666_Iafrate et al. (2004), V_0804_LC17530_Sharp et al. (2005), V_0805_LC17601_Sharp et al. (2005), V_0806_LC17642_Sharp et al. (2005), V_2229_LC17530_Locke et al. (2006), V_2230_LC17608_Locke

et al. (2006), V_2231_LC17631_Locke et al. (2006), V_2232_LC17640_Locke et al. (2006), V_4410_LC17595_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007), V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007), V_5019_LC17572_Wong et al.



20 37210 28252086 CTD-2506E2 CTD-2001C4 239 28.214876 0.689686412

DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55, ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35, TGM3, TGM6, SNRPB, ZNF343, TMC2, NOL5A, IDH3B, CPXM, C20orf141, FAM113A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5, FLJ13149, ProSAPiP1, C20orf116, ITPA, SLC4A11, ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA, PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2,

PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2, HAO1, TXNDC13, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, C20orf94, JAG1, BTBD3, SPTLC2L, TASP1, C20orf6, C20orf7, FLRT3, C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179, SNX5, C20orf72, OVOL2, CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5,

CRNKL1, C20orf26, INSM1, C20orf74, C20orf19, XRN2, NKX2-2, PAX1, FOXA2, SSTR4, THBD, CD93, NXT1, ZNF336, NAPB, CSTL1, CST11, CST8, CST9L, CST9, CST3, CST4, CST1, CST2, CST5, GGTLA4, C20orf39, CST7, C20orf3,

V_0222_LC19227_Iafrate et al. (2004), V_0224_LC19418_Iafrate et al. (2004), V_0225_LC19530_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007), V_5121_LC19253_Wong et al. (2007), V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong

et al. (2007), V_5125_LC19365_Wong et al. (2007), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et al. (2007), V_5129_LC19510_Wong et al. (2007), V_5130_LC19530_Wong et al. (2007) p13-q11.1

20 30074056 31034401 RP11-483M19 RP11-75I24 7 0.960345 0.676572861 C20orf160, HCK, TM9SF4, PLAGL2, POFUT1, KIF3B, ASXL1, C20orf112, LOC149950, COMMD7, DNMT3B, MAPRE1 V_5132_LC19553_Wong et al. (2007), V_5133_LC19567_Wong et al. (2007) q11.2120 47910222 50919830 RP11-223M11 RP11-352O19 34 3.009608 0.893502838 SLC9A8, SPATA2, ZNF313, SNAI1, Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175, PARD6B, BCAS4, ADNP, DPM1, MOCS3, KCNG1, NFATC2, ATP9A, SALL4, ZFP64 V_0226_LC19822_Iafrate et al. (2004), V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q13.13-q13.220 52902274 54958983 RP11-346B3 RP11-670K6 15 2.056709 1.031273548 CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C q13.2-q13.3120 58324500 60232424 RP11-754K18 RP11-220G17 17 1.907924 0.607136688 LOC284757, CDH4, TAF4, LSM14B, PSMA7, SS18L1, GTPBP5, HRH3 q13.33

20 61234049 61862014 CTD-2240P21 CTD-2588B5 3 0.627965 0.634872936 YTHDF1, BIRC7, C20orf58, ARFGAP1, COL20A1, CHRNA4, KCNQ2, EEF1A2, C20orf149, PTK6, SRMS, C20orf195, PRIC285, GMEB2, STMN3, RTEL1, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, BTBD4V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al. (2007), V_5149_LC19985_Wong et al. (2007), V_5150_LC19985_Wong et al.

(2007) q13.33

22 17313883 19854524 CTD-2522F24 RP11-294A9 30 2.540641 0.638380713DGCR2, DGCR14, TSSK2, GSCL, SLC25A1, CLTCL1, HIRA, MRPL40, LOC128977, UFD1L, CDC45L, CLDN5, GP1BB, TBX1, GNB1L, C22orf29, TXNRD2, COMT, ARVCF, C22orf25, DGCR8, HTF9C, RANBP1, ZDHHC8, RTN4R, DGCR6L,

ZNF74, SCARF2, KLHL22, PCQAP, PIK4CA, SERPIND1, SNAP29, CRKL, AIFL, LZTR1, THAP7, MGC16703, P2RXL1, SLC7A4, LOC400891, FLJ42953V_0816_LC20342_Sharp et al. (2005), V_2261_LC20342_Locke et al. (2006), V_2262_LC20342_Locke et al. (2006), V_5168_LC20342_Wong et al. (2007), V_5169_LC20342_Wong et al.

(2007), V_5170_LC20342_Wong et al. (2007), V_5171_LC20342_Wong et al. (2007), V_5172_LC20342_Wong et al. (2007) q11.21

22 20381845 49518700 RP11-794K20 RP11-423E19 257 29.136855 1.213559351

PPIL2, YPEL1, MAPK1, PPM1F, TOP3B, VPREB1, SUHW2, SUHW1, PRAME, GGTL4, RTDR1, GNAZ, RAB36, BCR, FLJ31568, LOC388882, IGLL1, LOC51233, Rgr, ZNF70, VPREB3, C22orf15, C22orf16, MMP11, SMARCB1, DERL3, SLC2A11, MIF, LOC653689, LOC100037417, DDT, GSTT2, GSTT1, CABIN1, SUSD2, GGTLA1, KIAA0376, ADORA2A, UPB1, C22orf13, SNRPD3, C22orf36, GGT1, PIWIL3, RUTBC2, bA9F11.1, CRYBB3, CRYBB2, LOC91353, LRP5L,

ADRBK2, MYO18B, SEZ6L, ASPHD2, HPS4, LOC402055, TFIP11, TPST2, CRYBB1, CRYBA4, MN1, PITPNB, CHEK2, HSC20, FLJ33814, XBP1, HS747E2A, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RRP22, AP1B1, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UCRC, ASCC2, MTMR3, LOC400924, HORMAD2, LIF, OSM, LOC652968, TBC1D10A, SF3A1, LOC550631, LOC200312, SEC14L2, MTP18, SEC14L3, SEC14L4, GAL3ST1, PES1, TCN2,

SLC35E4, DUSP18, OSBP2, MORC2, SMTN, SELM, PIB5PA, PLA2G3, RNF185, LIMK2, MGC17330, ZNF278, DRG1, EIF4ENIF1, SFI1, PISD, MGC50372, DEPDC5, YWHAH, LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28, BPIL2, FBXO7, SYN3, TIMP3, LARGE, RAXLX, HMG2L1, TOM1, HMOX1, MCM5, RASD2, MB, LOC284912, APOL6, APOL5, RBM9, APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB,

NCF4, CSF2RB, MGC35206, TST, MPST, KCTD17, TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2, PSCD4, KIAA1904, MF

(2005), V_0818_LC20342_Sharp et al. (2005), V_0819_LC20395_Sharp et al. (2005), V_2029_LC20395_Urban et al (2006), V_2030_LC20342_Urban et al (2006), V_2031_LC20342_Urban et al (2006), V_2032_LC20386_Urban et al (2006), V_2033_LC20386_Urban et al (2006), V_2034_LC20342_Urban et al (2006), V_2035_LC20386_Urban et al (2006),

V_2036_LC20386_Urban et al (2006), V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_2264_LC20342_Locke et al. (2006), V_2265_LC20342_Locke et al. (2006), V_2266_LC20342_Locke et al. (2006), V_2267_LC20342_Locke et al. (2006), V_2268_LC20342_Locke et al. (2006), V_2269_LC20395_Locke et al. (2006), V_2270_LC20395_Locke

et al. (2006), V_2271_LC20395_Locke et al. (2006), V_2272_LC20395_Locke et al. (2006), V_2273_LC20404_Locke et al. (2006), V_5174_LC20342_Wong et al. (2007), V_5175_LC20342_Wong et al. (2007), V_5176_LC20342_Wong et al. (2007), V_5177_LC20342_Wong et al. (2007), V_5178_LC20342_Wong et al. (2007), V_5179_LC20381_Wong et al.

(2007), V_5180_LC20386_Wong et al. (2007), V_5181_LC20466_Wong et al. (2007), V_5182_Lq11.21-q13.33


1 736572 16680777 RP11-13F13 RP11-219J7 138 15.944205 -1.188865279

SAMD11, NOC2L, KLHL17, PLEKHN1, HES4, ISG15, AGRN, C1orf159, TTLL10, TNFRSF18, TNFRSF4, SDF4, B3GALT6, C1QDC2, UBE2J2, SCNN1D, CENTB5, PUSL1, CPSF3L, MGC10334, TAS1R3, DVL1, MXRA8, AURKAIP1, CCNL2, MRPL20, VWA1, ATAD3C, ATAD3B, ATAD3A, SSU72, MIB2, MMP23B, CDC2L1, CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, LOC339457, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4,

HES5, TNFRSF14, C1orf93, MMEL1, ACTRT2, PRDM16, ARHGEF16, MEGF6, FAM79A, WDR8, TP73, KIAA0495, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2, IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1,

V_0001_LC0020_Iafrate et al. (2004), V_0002_LC0028_Iafrate et al. (2004), V_0003_LC0126_Iafrate et al. (2004), V_0004_LC0152_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005),V_0677_LC0152_Sharp et al. (2005), V_2042_LC0028_Locke et al. (2006), V_4192_LC0040_Wong et al. (2007), V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007), V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007), V_4203_LC0113_Wong et al. (2007), V_4204_LC0118_Wong et al. (2007),

V_4205_LC0141_Wong et al. (2007), V_4206_LC0165_Wong et al. (2007), V_4207_LC0177_Wong et al. (2007), V_4403_LC0152_Wong et al. (2007) p36.33-p36.13

1 17054365 31987752 RP11-605E5 RP11-73M7 167 14.933387 -0.603632119

LOC440570, CROCC, MFAP2, ATP13A2, SDHB, PADI2, PADI1, PADI3, PADI4, PADI6, RCC2, ARHGEF10L, ACTL8, IGSF21, KLHDC7A, PAX7, TAS1R2, ALDH4A1, ZUBR1, KIAA0090, MRT4, AFAR3, AKR7A3, AKR7A2, PQLC2, CAPZB, C1orf151, NBL1, HTR6, TMCO4, RNF186, PLA2G2E, PLA2G2A, PLA2G5, PLA2G2D, PLA2G2F, UBXD3, FLJ32784, CAMK2N1, C1orf166, FAM43B, CDA, PINK1, DDOST, KIF17, HP1BP3, EIF4G3, ECE1, NBPF3, ALPL, RAP1GA1, USP48, LDLRAD2, HSPG2, ELA3B, ELA3A, CDC42, WNT4, ZBTB40, EPHA8, C1QA, C1QC, C1QB, EPHB2, AOF2, LUZP1, HTR1D, HNRPR, ZNF436, LOC148898, TCEA3, DDEFL1, E2F2, ID3, RPL11, TCEB3, C1orf128, LYPLA2, GALE, HMGCL, FUCA1, CNR2, PNRC2, FUSIP1, MYOM3, IL22RA1, IL28RA, GRHL3, C1orf201, NPAL3, DSCR1L2, C1orf130, SRRM1, CLIC4, RUNX3, SYF2, C1orf63, RHD, TMEM50A, RHCE, TMEM57, LDLRAP1, MAN1C1, SEPN1, FAM54B, C1orf135, PAQR7, FLJ32206, STMN1, PAFAH2, EXTL1, SLC30A2, TRIM63, PDIK1L, GRRP1, ZNF593, CNKSR1, CATSPER4, CCDC21, SH3BGRL3, UBXD5, CD52, FLJ38020, AIM1L, ZNF683, LIN28, DHDDS, HMGN2, RPS6KA1, ARID1A, PIGV,

ZDHHC18, SFN, ATPBD1B, GPATC3, NR0B2, NUDC, C1orf172, LOC388610, FAM46B, SLC9A1, WDTC1, C1orf160, SYTL1, MAP3K6, FCN3, CD164L2, GPR3, WASF2, AHDC1, FGR, IFI6, FAM76A, STX12, PPP1R8, C1orf38, RPA2,



2 133691999 151863196 RP11-449L24 RP11-407E14 177 18.171197 -0.389689192NAP5, MGAT5, TMEM163, ACMSD, CCNT2, YSK4, RAB3GAP1, ZRANB3, R3HDM1, UBXD2, LCT, MCM6, DARS, CXCR4, THSD7B, HNMT, LOC339745, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZFHX1B, ACVR2A, ORC4L, MBD5,

EPC2, KIF5C, LOC130576, MGC52057, C2orf25, RND3, FLJ45645, NMI V_4309_LC2319_Wong et al. (2007), V_4310_LC2333_Wong et al. (2007) q21.2-q23.3

2 152112676 164609238 RP11-624O1 RP11-690D1 120 12.496562 -0.592400773NEB, ARL5A, CACNB4, STAM2, FMNL2, ARL6IP6, RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, KIAA1189, PSCDBP, ACVR1C, ACVR1, UPP2, LOC130940, PKP4, LOC92196, TANC1, WDSUB1, BAZ2B, CD302, LY75, PLA2R1,

ITGB6, RBMS1, TANK, PSMD14, TBR1, SLC4A10, DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN V_4311_LC2333_Wong et al. (2007), V_4312_LC2343_Wong et al. (2007), V_4313_LC2352_Wong et al. (2007), V_4314_LC2392_Wong et al. (2007), V_4315_LC2398_Wong et al. (2007) q23.3-q24.32 168333141 170250237 RP11-43I18 RP11-112M13 17 1.917096 -0.339130454 B3GALT1, STK39, LASS6, NOSTRIN, SPBC25, G6PC2, ABCB11, DHRS9, LRP2, BBS5, KBTBD10, FLJ21901, PPIG V_4318_LC2416_Wong et al. (2007) q24.3-q31.12 170608695 171966858 RP11-799P20 RP11-465K11 13 1.358163 -0.300676281 ZNF650, MYO3B, LOC440925, SP5, GAD1, GORASP2, TLK1, METTL8 V_0027_LC2428_Iafrate et al. (2004) q31.1

2 172273185 225719776 RP11-703L16 RP11-723I23 518 53.446591 -1.09040918

DYNC1I2, SLC25A12, HAT1, MAP1D, DLX1, DLX2, ITGA6, PDK1, RAPGEF4, ZAK, CDCA7, SP3, PTD004, FLJ46347, CIR, SCRN3, GPR155, WIPF1, CHRNA1, CHN1, ATF2, ATP5G3, KIAA1715, EVX2, HOXD13, HOXD12, HOXD11, HOXD10, HOXD9, HOXD8, HOXD4, HOXD3, HOXD1, MTX2, HNRPA3, NFE2L2, AGPS, TTC30B, TTC30A, PDE11A, DRB1, OSBPL6, PRKRA, DFNB59, FKBP7, PLEKHA3, TTN, FLJ39502, SESTD1, ZNF533, KIAA1604, UBE2E3, ITGA4,

CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, C2orf10, FSIP2, FLJ44048, ZC3H15, ITGAV, KIAA1946, ZSWIM2, CALCRL, TFPI, GULP1, DIRC1, COL3A1, COL5A2, WDR75, SLC40A1, ASNSD1, FLJ25415, OSGEPL1, ORMDL1, PMS1, GDF8, MGC13057, HIBCH, INPP1, FLJ20160, NAB1, GLS, STAT1, STAT4, MYO1B, OBFC2A, SDPR, TMEFF2, SLC39A10, DNAH7, STK17B, HECW2, FLJ39660, GTF3C3, UNQ6411, PGAP1, ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, PREI3, C2orf11, MARS2, BOLL, PLCL1, SATB2, FLJ38973, FLJ37953, FLJ22555, DNAPTP6, KCTD18, SGOL2, AOX1, BZW1, CLK1, PPIL3, NIF3L1, ORC2L, FAM126B, NDUFB3,

CFLAR, CASP10, CASP8, ALS2CR12, TRAK2, ALS2CR2, ALS2CR11, ALS2CR4, MPP4, ALS2, ALS2CR7, FZD7, FLJ39061, SUMO1, NOP5/NOP58, BMPR2, ALS2CR13, ICA1L, WDR12, ALS2CR8, CYP20A1, ABI2, RAPH1, CD28, CTLA4,

V_0028_LC2438_Iafrate et al. (2004), V_0029_LC2519_Iafrate et al. (2004), V_0030_LC2686_Iafrate et al. (2004), V_4319_LC2466_Wong et al. (2007), V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007), V_4322_LC2517_Wong et al. (2007), V_4323_LC2558_Wong et al. (2007), V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007),

V_4326_LC2650_Wong et al. (2007), V_4328_LC2702_Wong et al. (2007) q31.1-q36.22 228049515 229389498 RP11-107L21 RP11-674L1 15 1.339983 -0.516385092 HRB, DKFZp547H025, SLC19A3, CCL20, WDR69 q36.32 230386961 232628962 RP11-457P23 RP11-763N15 23 2.242001 -0.680070594 TRIP12, FBXO36, SLC16A14, SP110, SP140, LOC93349, SP100, CAB39, ITM2C, GPR55, PSMD1, HTR2B, ARMC9, B3GNT7, NCL, MGC43122, NMUR1, MGC35154, PTMA, PDE6D, COPS7B, NPPC, DIS3L2 q36.3-q37.12 240550838 241392414 RP11-206J15 CTD-2036A16 7 0.841576 -0.713813389 NDUFA10, OR6B2, LOC643905, OR6B3, MYEOV2, OTOS, GPC1, ANKMY1, LOC285193, RNPEPL1, CAPN10, GPR35, AQP12A, KIF1A V_0031_LC2814_Iafrate et al. (2004) q37.32 242174892 242750818 RP11-811O7 RP11-1159G17 4 0.575926 -0.284529788 THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, FLJ33590 V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4331_LC2814_Wong et al. (2007) q37.33 59980719 60556905 RP11-812I4 RP11-348K14 4 0.576186 -0.917096187 FHIT p14.2

4 39105 58423328 RP11-335H3 RP11-680M13 499 58.384223 -2.341710798

ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, TETRAN, C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1,

TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131, LOC650293, DRD5, SLC2A9, WDR1, KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345,

FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL, SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721, PCDH7, CENTD1, FLJ11017, RELL1, PGM2, TBC1D1, PTTG2, KLF3, TLR10, TLR1, TLR6, LOC92689, FLJ23235, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS,

UGDH, LOC201895, HIP2, SCC-112, N4BP2, RHOH, CHRNA9, FLJ20273, FLJ14001, APBB2, UCHL1, DKFZP686A012,

V_0045_LC4542_Iafrate et al. (2004), V_0130_LC4464_Iafrate et al. (2004), V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_0700_LC4677_Sharp et al. (2005), V_2066_LC4068_Locke et al. (2006), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_2071_LC4709_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_Wong et al. (2007), V_4379_LC4291_Wong et al. (2007), V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007), V_4384_LC4441_Wong et al. (2007), V_4385_LC4531_Wong et al. (2007), V_4386_LC4542_Wong et al. (2007), V_4387_LC4546_Wong et al. (2007), V_4388_LC4555_Wong et al. (2007), V_4389_LC4569_Wong et al. (2007),

V_4390_LC4615_Wong et al. (2007), V_4391_LC4626_Wong et al. (2007), V_4392_LC4693_W p16.3-q12

4 70445133 160088909 RP11-777E22 RP11-789K9 677 89.643776 -0.903582258

UGT2A1, SULT1B1, SULT1E1, CSN1S1, CSN2, STATH, HTN3, HTN1, LOC401137, APIN, C4orf7, CSN3, NYD-SP26, SMR3A, SMR3B, PROL1, MUC7, AMTN, AMBN, ENAM, IGJ, SAS10, RUFY3, GRSF1, MOBKL1A, DCK, SLC4A4, GC, NPFFR2, ADAMTS3, FLJ38991, ANKRD17, ALB, AFP, AFM, RASSF6, IL8, CXCL6, PF4V1, CXCL1, PF4, PPBP, CXCL5, CXCL3, CXCL2, MTHFD2L, EPGN, EREG, AREG, BTC, DKFZP564O082, RCHY1, THAP6, FLJ23657, CDKL2, G3BP2,

VDP, PPEF2, ASAHL, SDAD1, CXCL9, CXCL10, CXCL11, ART3, NUP54, SCARB2, GENX-3414, FLJ25770, SHROOM3, LOC345079, CCNI, CCNG2, CXCL13, CNOT6L, MRPL1, FRAS1, ANXA3, BMP2K, PAQR3, ARD1B, GK2, ANTXR2, PRDM8, FGF5, MGC35043, BMP3, PRKG2, RASGEF1B, HNRPD, HNRPDL, ENOPH1, FLJ12993, SCD5, SEC31A, SEC31L1, THAP9, DKFZp686L181, COPS4, PLAC8, COQ2, HPSE, HEL308, MRPS18C, CCDC98, HMFN0839, NKX6-1,

CDS1, WDFY3, ARHGAP24, MAPK10, PTPN13, SLC10A6, C4orf36, AFF1, KLHL8, HSD17B13, HSD17B11, NUDT9, SPARCL1, DSPP, DMP1, IBSP, MEPE, SPP1, PKD2, ABCG2, PPM1K, HERC6, HERC5, PIGY, HERC3, NAP1L5, FAM13A1, TIGD2, GRIN3, SNCA, MMRN1, MGC48628, GRID2, ATOH1, SMARCAD1, PGDS, PDLIM5, BMPR1B, UNC5C, PDHA2, MGC46496, RAP1GDS1, TSPAN5, EIF4E, METAP1, ADH5, ADH4, ADH6, ADH1A, ADH1B, ADH1C, ADH7,

V_0047_LC5166_Iafrate et al. (2004), V_0048_LC5301_Iafrate et al. (2004), V_0049_LC5396_Iafrate et al. (2004), V_0050_LC5522_Iafrate et al. (2004), V_0051_LC5838_Iafrate et al. (2004), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4399_LC4933_Wong et al. (2007), V_4401_LC5023_Wong et al. (2007), V_4402_LC5044_Wong et al. (2007), V_4405_LC5085_Wong et al. (2007), V_4406_LC5192_Wong et al. (2007), V_4407_LC5203_Wong et al. (2007), V_4408_LC5273_Wong et al. (2007), V_4409_LC5332_Wong et al. (2007), V_4411_LC5470_Wong et al. (2007), V_4412_LC5587_Wong et al. (2007), V_4413_LC5596_Wong et al. (2007), V_4414_LC5605_Wong et al. (2007), V_4415_LC5607_Wong et al. (2007), V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007), V_4418_LC5696_Wong et al. (2007), V_4419_LC5731_Wong et al.

(2007), V_4420_LC5892_Wong et al. (2007), V_4587_LC5465_Wong et al. (2007) q13.3-q32.14 162167200 162723967 RP11-47B1 RP11-470O4 4 0.556767 -0.52850265 FSTL5 q32.2

4 165838649 191137774 RP11-730F4 CTD-2011O21 226 25.299125 -1.209497966

TRIM61, FLJ31659, TRIM60, FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1, HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4, ASB5, SPCS3, VEGFC, NEIL3, AGA, ODZ3, DCTD, FLJ30277, WWC2, CDKN2AIP, ING2, RWDD4A, FLJ12716, STOX2, ENPP6, IRF2, CASP3, FLJ33167, MLF1IP,

ACSL1, HELT, SLC25A4, SNX25, LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2, TLR3, DKFZP564J102, CYP4V2, KLKB1, F11, MTNR1A, FAT, ZFP42, FLJ25801, FLJ36180, FRG1V_0054_LC6039_Iafrate et al. (2004), V_0057_LC6244_Iafrate et al. (2004), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007), V_4423_LC6218_Wong et al. (2007), V_4424_LC6244_Wong et al. (2007), V_4425_LC6244_Wong et al. (2007), V_4426_LC6244_Wong et al. (2007) q32.3-q35.2

6 64779 45016882 RP13-486F12 RP11-730M18 502 44.952103 -0.635643748

FLJ43763, DUSP22, IRF4, EXOC2, HUS1B, FOXQ1, FOXF2, FOXC1, GMDS, C6orf195, LOC340156, WRNIP1, SERPINB1, SERPINB9, SERPINB6, DKFZp686I152, NQO2, LOC401233, RIPK1, BPHL, TUBB2A, TUBB2B, C6orf85, C6orf145, FAM50B, PRPF4B, C6orf146, C6orf201, PECI, CDYL, RPP40, C6orf149, FARS2, NRN1, F13A1, LY86, RREB1, SSR1, CAGE1, RIOK1, DSP, C6orf151, BMP6, TXNDC5, MUTED, EEF1E1, SLC35B3, OFCC1, TFAP2A, MGC40222, GCNT2, PAK1IP1, TMEM14C, TMEM14B, MAK, GCM2, LOC221711, ELOVL2, HERV-FRD, NEDD9, C6orf105, HIVEP1, EDN1, PHACTR1, TBC1D7, GFOD1, C6orf114, SIRT5, NOL7, RANBP9, C6orf79, RNF182, CD83, JARID2, DTNBP1, MYLIP, GMPR, ATXN1, RBM24, CAP2, FAM8A1, NUP153, KIF13A, NHLRC1, TPMT, AOF1, DEK, IBRDC2, ID4, MBOAT1, E2F3, CDKAL1, SOX4, PRL, HDGFL1, NRSN1, DCDC2, KAAG1, MRS2L, GPLD1, ALDH5A1, KIAA0319, TTRAP, THEM2, C6orf62, GMNN, C6orf32, LRRC16, SCGN, HIST1H2AA, HIST1H2BA, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F,

V_0070_LC7931_Iafrate et al. (2004), V_0071_LC7931_Iafrate et al. (2004), V_0072_LC7984_Iafrate et al. (2004), V_0076_LC8230_Iafrate et al. (2004), V_0077_LC8268_Iafrate et al. (2004), V_0715_LC8143_Sharp et al. (2005), V_0716_LC8143_Sharp et al. (2005), V_0717_LC8143_Sharp et al. (2005), V_2095_LC8143_Locke et al. (2006), V_2096_LC8143_Locke et al. (2006), V_2097_LC8143_Locke et al. (2006), V_4483_LC7931_Wong et al. (2007), V_4484_LC7948_Wong et al. (2007), V_4485_LC7995_Wong et al. (2007), V_4486_LC8077_Wong et al. (2007), V_4487_LC8122_Wong et al. (2007), V_4488_LC8136_Wong et al. (2007), V_4489_LC8143_Wong et al. (2007), V_4490_LC8143_Wong et al. (2007), V_4491_LC8158_Wong et al. (2007), V_4492_LC8203_Wong et al. (2007), V_4493_LC8208_Wong et al. (2007), V_4669_LC8166_Wong et al. (2007), V_4767_LC8208_Wong et al. (2007), V_5038_LC8092_Wong et al.

(2007), V_0374_LC7931_Bejjani et al. (2005) p25.3-p21.16 45375844 47671273 RP11-472L1 RP11-385F7 26 2.295429 -0.350738728 SUPT3H, RUNX2, CLIC5, ENPP4, ENPP5, DSCR1L1, CYP39A1, SLC25A27, TDRD6, PLA2G7, MEP1A, GPR116, GPR110, TNFRSF21, CD2AP V_0078_LC8319_Iafrate et al. (2004), V_0718_LC8331_Sharp et al. (2005) p12.3

6 50387092 56527558 RP11-673E15 RP11-263F20 57 6.140466 -0.678177248TFAP2D, TFAP2B, PKHD1, IL17, IL17F, MCM3, PAQR8, EFHC1, TRAM2, TMEM14A, GSTA2, GSTA1, GSTA5, GSTA3, GSTA4, ICK, FBXO9, GCM1, ELOVL5, GCLC, KLHL31, LRRC1, C6orf142, TINAG, C6orf143, HCRTR2, UNQ9356,

HMGCLL1, BMP5, COL21A1, DST p12.3-p12.16 73101138 74115777 RP11-236L15 RP11-637O20 9 1.014639 -0.421861381 RIMS1, KCNQ5, C6orf148 V_0087_LC8488_Iafrate et al. (2004) q13

6 90177196 111130824 RP11-806J11 RP11-346C16 204 20.953628 -0.588716152

RRAGD, ANKRD6, LYRM2, MDN1, CASP8AP2, CX62, BACH2, MAP3K7, EPHA7, MANEA, FUT9, KIAA0776, FHL5, GPR63, C6orf66, KLHL32, C6orf167, POU3F2, FBXL4, C6orf168, COQ3, C6orf111, USP45, CCNC, PRDM13, MCHR2, SIM1, ASCC3, GRIK2, HACE1, LIN28B, BVES, POPDC3, PREP, PRDM1, ATG5, AIM1, RTN4IP1, QRSL1, C6orf203, KIAA1553, PDSS2, FLJ10159, SCML4, SEC63, OSTM1, NR2E1, SNX3, LACE1, FOXO3A, ARMC2, SESN1, C6orf182,

C10orf37, CD164, PPIL6, SMPD2, MICAL1, ZBTB24, FLJ25791, FLJ42177, C6orf199, KIAA0274, GPR6, WASF1, CDC40, DDO, SLC22A16, CDC2L6V_0089_LC8676_Iafrate et al. (2004), V_4501_LC8583_Wong et al. (2007), V_4502_LC8592_Wong et al. (2007), V_4503_LC8644_Wong et al. (2007), V_4504_LC8662_Wong et al. (2007),

V_4505_LC8672_Wong et al. (2007) q15-q21

6 111803201 120122917 RP11-801N3 RP11-656C24 70 8.319716 -0.554808306REV3L, TRAF3IP2, FYN, WISP3, TUBE1, LOC619208, LAMA4, LOC442247, MARCKS, FLJ34503, HDAC2, HS3ST5, FRK, NT5DC1, COL10A1, TSPYL4, TSPYL1, DSE, LOC441168, C6orf188, C6orf78, RWDD1, RSHL3, C6orf113, KPNA5,

GPRC6A, RFXDC1, VGLL2, ROS1, DCBLD1, GOPC, C6orf68, SLC35F1, C6orf204, PLN, ASF1A, MCMDC1, C6orf60, MAN1A1 V_4506_LC8686_Wong et al. (2007) q21-q22.31

6 123757675 131424482 RP11-166L6 RP11-456H15 72 7.666807 -0.570380878TRDN, TCBA1, IBRDC1, TPD52L1, HDDC2, HEY2, NCOA7, HINT3, C6orf75, C6orf173, RSPO3, RNF146, ECHDC1, KIAA0408, C6orf174, LOC389429, C6orf190, PTPRK, LAMA2, ARHGAP18, C6orf191, L3MBTL3, SAMD3, KIAA1913,

EPB41L2 V_0090_LC8741_Iafrate et al. (2004), V_0091_LC8757_Iafrate et al. (2004), V_4507_LC8786_Wong et al. (2007) q22.31-q23.2

6 132332629 170851849 RP11-124J2 RP11-113J6 389 38.51922 -0.980452769

MOXD1, STX7, TAAR9, TAAR8, TAAR6, TAAR5, TAAR2, TAAR1, VNN1, VNN3, VNN2, C6orf192, RPS12, LOC285735, EYA4, TCF21, TBPL1, SLC2A12, SGK, ALDH8A1, HBS1L, MYB, AHI1, PDE7B, FAM54A, BCLAF1, MAP7, MAP3K5, PEX7, SLC35D3, IL20RA, IL22RA2, IFNGR1, OLIG3, TNFAIP3, PERP, KIAA1244, PBOV1, HEBP2, CCDC28A, LFDH, REPS1, HECA, TXLNB, CITED2, NMBR, C6orf55, GPR126, HIVEP2, AIG1, DEADC1, PEX3, FUCA2, PHACTR2, LTV1, PLAGL1, SF3B5, STX11, UTRN, EPM2A, FLJ44955, FBXO30, SHPRH, GRM1, RAB32, STXBP5, LOC389432, SASH1, UST, MAP3K7IP2, SUMO4, PPIL4, C6orf72, KATNA1, LATS1, NUP43, PCMT1, LRP11, RAET1E, RAET1G, ULBP2, ULBP1, RAET1L, ULBP3, PPP1R14C, C6orf71, PLEKHG1, MTHFD1L, AKAP12, ZBTB2, C6orf96, C6orf211, C6orf97, ESR1, SYNE1, MYCT1, VIP, FBXO5, MTRF1L, RGS17, OPRM1, PIP3-E, CNKSR3, RBM16, TIAM2, TFB1M, CLDN20,

NOX3, ARID1B, ZDHHC14, SNX9, SYNJ2, SERAC1, GTF2H5, TULP4, DYNLT1, SYTL3, VIL2, LOC202459, RSHL2, TAGAP, FNDC1, SOD2, WTAP, ACAT2, TCP1, MRPL18, PNLDC1, MAS1, IGF2R, SLC22A1, SLC22A2, SLC22A3, LPAL2, LPA, PLG, MAP3K4, AGPAT4, PARK2, PACRG, QKI, C6orf118, PDE10A, LOC441177, T, MGC35308, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31, UNC93A, TTLL2, TCP10, LOC401286, LOC653483, MLLT4, KIF25,

V_0092_LC8865_Iafrate et al. (2004), V_2098_LC9057_Locke et al. (2006), V_4509_LC8851_Wong et al. (2007), V_4510_LC8882_Wong et al. (2007), V_4511_LC8897_Wong et al. (2007), V_4512_LC8905_Wong et al. (2007), V_4513_LC8977_Wong et al. (2007), V_4514_LC8985_Wong et al. (2007), V_4515_LC9007_Wong et al. (2007), V_4516_LC9028_Wong et al. (2007),

V_4517_LC9032_Wong et al. (2007), V_4518_LC9057_Wong et al. (2007), V_4702_LC8905_Wong et al. (2007) q23.2-q27

7 137901345 143460304 RP11-559C14 RP11-137A1 59 5.558959 -0.64142434

TRIM24, LOC136306, ATP6V0A4, MGC14289, ZC3HAV1, TTC26, HSPC268, LUC7L2, FLJ44186, CLEC2L, HIPK2, TBXAS1, PARP12, KIAA1718, SLC37A3, RAB19B, MKRN1, DENND2A, ADCK2, NDUFB2, BRAF, MRPS33, LOC401410, MULK, KIAA1147, FLJ40852, SSBP1, TAS2R3, TAS2R4, TAS2R5, LOC136242, OR9A4, CLEC5A, TAS2R38, MGAM, TRY1, PRSS1, PRSS2, EPHB6, TRPV6, TRPV5, C7orf34, KEL, OR9A2, OR6V1, PIP, TAS2R39, TAS2R40, GSTK1,

TMEM139, CASP2, CLCN1, KIAA0773, FAM131B, ZYX, EPHA1, TAS2R60, TAS2R41, LOC441294, FLJ40722, KIAA0738, OR2F2, OR2F1, OR6B1, OR2A5, OR2A25, OR2A12, OR2A2, OR2A14

V_0110_LC10016_Iafrate et al. (2004), V_0725_LC10016_Sharp et al. (2005), V_2107_LC10016_Locke et al. (2006), V_2108_LC10016_Locke et al. (2006), V_2109_LC10016_Locke et al. (2006), V_4562_LC9987_Wong et al. (2007), V_4563_LC10013_Wong et al. (2007), V_4564_LC10013_Wong et al. (2007), V_4565_LC10013_Wong et al. (2007), V_4566_LC10013_Wong

et al. (2007), V_4567_LC10013_Wong et al. (2007), V_4568_LC10016_Wong et al. (2007), V_4569_LC10016_Wong et al. (2007), V_4570_LC10016_Wong et al. (2007) q34-q357 143845411 149231026 RP11-340G20 RP11-263O17 46 5.385615 -0.564721959 TPK1, LOC402715, CNTNAP2, C7orf33, CUL1, EZH2, PDIA4, ZNF786, ZNF425, ZNF398, ZNF282, ZNF212, ZNF783, ZNF777, FLJ31413, FLJ12700, KRBA1, ZNF467, SSPO, LOC401431, ATP6V0E2L V_0727_LC10049_Sharp et al. (2005) q35-q36.18 3682170 4351213 RP11-199C5 RP11-395E21 6 0.669043 -0.510398659 CSMD1 p23.2

8 5848929 9632692 RP11-32L7 RP11-796J3 26 3.783763 -0.810012657MCPH1, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, LOC653600, DEFA3, DEFA5, PJCG6, DEFB104A, DEFB104B, DEFB107A, DEFB107B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, SPAG11, SPAG11A, DEFB103B,

DEFB103A, DEFB4, DEFB109, CLDN23, MFHAS1, THEX1, PPP1R3B, TNKS

V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp et al. (2005), V_0739_LC10380_Sharp et al. (2005), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006), V_2116_LC10380_Locke

et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_4577_LC10380_Wong et al. (2007), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007), V_4581_LC10380_Wong et al. (2007) p23.2-p23.1

8 11741771 17226879 RP11-367E11 RP11-651E23 46 5.485108 -0.594847879 CTSB, DEFB137, DEFB136, DEFB134, DUB3, FAM86B1, DEFB130, LOC440053, LONRF1, C8orf79, KIAA1456, DLC1, SGCZ, TUSC3, MSR1, FGF20, EFHA2, ZDHHC2, CNOT7, VPS37A, MTMR7V_0116_LC10436_Iafrate et al. (2004), V_0740_LC10408_Sharp et al. (2005), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_2122_LC10408_Locke et al.

(2006), V_4582_LC10408_Wong et al. (2007), V_4583_LC10408_Wong et al. (2007), V_4584_LC10408_Wong et al. (2007) p23.1-p22

8 25495924 35057272 RP11-64H23 RP11-415O7 74 9.561348 -0.606338775EBF2, PPP2R2A, BNIP3L, PNMA2, DPYSL2, ADRA1A, STMN4, TRIM35, PTK2B, CHRNA2, EPHX2, CLU, SCARA3, CCDC25, ESCO2, PBK, SCARA5, ELP3, PNOC, ZNF395, FBXO16, FZD3, EXTL3, RC74, HMBOX1, KIF13B, DUSP4,

TMEM66, LEPROTL1, DCTN6, RBPMS, GTF2E2, GSR, UBXD6, PPP2CB, TEX15, PURG, WRN, NRG1, FUT10, RBM13, C8orf41, RNF122, DUSP26 p21.2-p128 37790754 38298495 CTD-2225N15 CTD-2385A20 5 0.507741 -0.320230438 GPR124, BRF2, RAB11FIP1, GOT1L1, ADRB3, EIF4EBP1, ASH2L, STAR, LSM1, BAG4, DDHD2, PPAPDC1B, WHSC1L1 p128 39186740 40163169 CTD-2172C13 RP11-719N14 8 0.976429 -0.338851964 ADAM32, ADAM18, ADAM2, INDO, C8orf4 p11.23-p11.218 41425293 43895573 RP11-802B19 RP11-32P10 18 2.47028 -0.457007241 GOLGA7, SLD5, AGPAT6, FLJ25169, ANK1, MYST3, AP3M2, PLAT, IKBKB, POLB, DKK4, VDAC3, SLC20A2, C8orf40, CHRNB3, CHRNA6, THAP1, RNF170, HOOK3, FNTA, FLJ23356, POTE8 p11.21-p11.1

10 63259 38455760 RP11-631M21 RP11-677N1 360 38.392501 -0.631034221

TUBB8, ZMYND11, DIP2C, LARP5, GTPBP4, IDI2, IDI1, WDR37, LOC399706, ADARB2, PFKP, PITRM1, KLF6, AKR1CL2, AKR1C1, AKR1C2, AKR1C3, AKR1CL1, AKR1C4, UCN3, TUBAL3, NET1, CALML5, CALML3, ASB13, GDI2, ANKRD16, FBXO18, IL15RA, IL2RA, RBM17, PFKFB3, PRKCQ, SFMBT2, ITIH5, ITIH2, KIN, ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2, USP6NL, ECHDC3, C10orf47, UPF2, DHTKD1, SEC61A2, NUDT5, C10orf7, CAMK1D,

CCDC3, OPTN, MCM10, C10orf49, PHYH, SEPHS1, C10orf30, PRPF18, FRMD4A, FAM107B, ARMETL1, HSPA14, SUV39H2, DCLRE1C, MEIG1, THEDC1, ACBD7, C10orf111, RPP38, NMT2, C10orf38, ITGA8, C10orf97, PTER, C1QL3, RSU1, CUBN, DNMT2, VIM, ST8SIA6, PTPLA, STAM, LOC340843, MRC1, MRC1L1, SLC39A12, CACNB2, NSUN6, ARL5B, PLXDC2, NEBL, C10orf113, C10orf114, FLJ45187, MLLT10, DNAJC1, COMMD3, PCGF4, SPAG6, PIP5K2A,

ARMC3, MSRB2, PTF1A, C10orf67, KIAA1217, ARHGAP21, PRTFDC1, C10orf63, THNSL1, GPR158, MYO3A, GAD2, APBB1IP, PDSS1, ABI1, ANKRD26, YME1L1, MASTL, ACBD5, LOC387646, PTCHD3, RAB18, IRXL1, ARMC4, MPP7, WAC, BAMBI, LYZL1, SVIL, PAPD1, MAP3K8, LYZL2, ZNF438, ZEB1, ARHGAP12, KIF5B, EPC1, CCDC7, C10orf68, ITGB1, NRP1, PARD3, CUL2, CREM, C10orf9, CX40.1, FZD8, ANKRD30A, ZNF248, ZNF25, ZNF33A, ZNF37A

V_4664_LC11931_Wong et al. (2007), V_4665_LC12095_Wong et al. (2007), V_4666_LC12101_Wong et al. (2007), V_4667_LC12118_Wong et al. (2007), V_4668_LC12124_Wong et al. (2007), V_4670_LC12172_Wong et al. (2007), V_4671_LC12175_Wong et al. (2007), V_4672_LC12205_Wong et al. (2007), V_4673_LC12210_Wong et al. (2007), V_4674_LC12215_Wong

et al. (2007), V_4675_LC12231_Wong et al. (2007), V_4676_LC12245_Wong et al. (2007) p15.3-p11.21

Gains

Losses

OVAS

10 104009602 135354737 RP11-346A7 RP11-1065F16 286 31.345135 -0.713511395

GBF1, NFKB2, PSD, FBXL15, CUEDC2, C10orf95, C10orf77, ACTR1A, SUFU, TRIM8, ARL3, SFXN2, C10orf26, CYP17A1, C10orf32, AS3MT, CNNM2, NT5C2, INA, PCGF6, TAF5, USMG5, PDCD11, FAM26B, FAM26C, NEURL, SH3PXD2A, OBFC1, SLK, COL17A1, C10orf78, C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SORCS3, SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1, DUSP5, CSPG6, PDCD4, SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1, C10orf118, TDRD1, VWA2, KIAA1914, ABLIM1, KIAA1600, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3, PNLIP, PNLIPRP1, PNLIPRP2, C10orf82, HSPA12A, KIAA1598, VAX1, KCNK18, SLC18A2, PDZD8, EMX2, RAB11FIP2, C10orf84, PRLHR, C10orf46, NANOS1, EIF3S10, FAM45A, FAM45B, SFXN4, PRDX3, GRK5, RGS10, TIAL1, BAG3, INPP5F, C10orf119, SEC23IP, PPAPDC1A, C10orf85, BRWD2, FGFR2, ATE1, C10orf86, TACC2, C10orf87, PLEKHA1, HTRA1, DMBT1, C10orf120, CUZD1, FAM24B, FAM24A, C10orf88, C10orf89, IKZF5, ACADSB, HMX2, BUB3, GPR26, CPXM2, GALNAC4S-6ST, OAT, LHPP, FAM53B, LOC399818,

KIAA0157, ZRANB1, CTBP2, C10orf137, MMP21, UROS, BCCIP, DHX32, FANK1, ADAM12, C10orf90, LOC728158, DOCK1, FLJ45557, NPS, FLJ46831, CLRN3, PTPRE, MKI67, MGMT, EBF3, TXNL2, TCERG1L, PPP2R2D, BNIP3,

V_0370_LC12807_Le Caignec et al. (2005), V_0766_LC12664_Sharp et al. (2005), V_2162_LC12807_Locke et al. (2006), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007), V_4714_LC12735_Wong et al. (2007), V_4715_LC12747_Wong et al. (2007), V_4716_LC12779_Wong et al. (2007), V_4717_LC12807_Wong et al. (2007),

V_4718_LC12807_Wong et al. (2007), V_4719_LC12807_Wong et al. (2007), V_4720_LC12807_Wong et al. (2007), V_4721_LC12807_Wong et al. (2007), V_4722_LC12807_Wong et al. (2007), V_4723_LC12807_Wong et al. (2007), V_4724_LC12807_Wong et al. (2007) q24.32-q26.3

11 16278275 17218047 RP11-439M19 RP11-689L7 12 0.939772 -0.525587005 SOX6, C11orf58, PLEKHA7, RPS13, PIK3C2A V_4731_LC12993_Wong et al. (2007) p15.111 18019463 19156940 RP11-769A15 RP11-589F4 15 1.137477 -0.560232649 SAAL1, MRGPRX3, MRGPRX4, SAA4, SAA2, SAA1, HPS5, GTF2H1, LDHA, LDHC, LDHAL6A, TSG101, UEV3, SPTY2D1, TMEM86A, IGSF22, PTPN5, MRGPRX1, MRGPRX2, ZDHHC13 V_4732_LC13002_Wong et al. (2007) p15.1

11 19962373 37565233 RP11-614L12 CTD-2196P16 193 17.60286 -0.828595285

NAV2, DBX1, HTATIP2, PRMT3, SLC6A5, NELL1, TMEM16E, SLC17A6, FANCF, GAS2, LUZP2, TMEM16C, MUC15, SLC5A12, LOC387758, BBOX1, CCDC34, LGR4, LIN7C, BDNF, KIF18A, METT5D1, KCNA4, FSHB, C11orf46, MPPED2, DCDC5, DCDC1, ZCSL3, IMMP1L, ELP4, PAX6, RCN1, WT1, WIT1, hfl-B5, CCDC73, PRRG4, QSER1, DEPDC7, TCP11L1, CSTF3, HIPK3, C11orf69, CD59, FBXO3, LMO2, GPIAP1, NAT10, ABTB2, CAT, ELF5, EHF, APIP, PDHX, CD44,

SLC1A2, DKFZP586H212, FJX1, TRIM44, LDLRAD3, C11orf55, COMMD9, FLJ14213, TRAF6, RAG1, RAG2, C11orf74V_0145_LC13078_Iafrate et al. (2004), V_2166_LC13021_Locke et al. (2006), V_4733_LC13087_Wong et al. (2007), V_4734_LC13090_Wong et al. (2007), V_4735_LC13093_Wong et al.

(2007), V_4736_LC13107_Wong et al. (2007), V_4737_LC13107_Wong et al. (2007) p15.1-p1211 79733306 81301980 RP11-353D10 RP11-104B17 13 1.568674 -0.880453023 q14.1

13 17918020 114117194 RP11-77P19 RP11-228M6 811 96.199174 -1.161370204

TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3, FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1, B3GTL, RXFP2, FRY, BRCA2, CG018, PFAAP5, APRIN, KL, STARD13, RFC3, NBEA, MAB21L1, DCAMKL1,

SOHLH2, SPG20, CCNA1, LOC400120, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6, FOXO1A, MRPS31, SLC25A15, ELF1, WBP4, KBTBD6, KBTBD7, MTRF1, NARG1L, RGC32, KIAA0564, DGKH, AKAP11, TNFSF11, FLJ40919, EPSTI1, DNAJC15, PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT,

LOC283514, ZC3H13, CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7, FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70, ATP7B, LOC440138, UTP14C, NEK

V_0167_LC14662_Iafrate et al. (2004), V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4797_LC14674_Wong et al. (2007), V_4798_LC14797_Wong



V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007), V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007), V_4899_LC14682_Wong et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) q11-q34

15 21805449 22576179 RP11-350A1 RP11-340A5 7 0.77073 -0.607934908 C15orf2 V_4880_LC16090_Wong et al. (2007), V_4881_LC16090_Wong et al. (2007) q11.2

15 36379883 98847164 RP11-9J12 RP11-168G16 520 62.467281 -1.676561706

SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C, GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D,

PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76, FRMD5, CASC4, CTDSPL2, EIF3S1, KIAA1840, B2M, RNF36, C15orf43, SORD, DUOX2, DUOXA2, NIP, DUOX1, SHF, SLC28A2, GATM, SPATA5L1,

C15orf48, SLC30A4, C15orf21, PLDN, SQRDL, SEMA6D, SLC24A5, MYEF2, SLC12A1, DUT, FBN1, CEP152, SHC4, CRI1, KIAA0256, COPS2, GALK2, C15orf33, FGF7, DTWD1, ATP8B4, SLC27A2, HDC, GABPB2, USP8, USP50, TRPM7, SPPL2A, AP4E1, TNFAIP8L3, CYP19A1, GLDN, DMXL2, SCG3, LYSMD2, TMOD2, TMOD3, LEO1, MAPK6, BCL2L10, GNB5, MYO5C, MYO5A, ARPP-19, KIAA1370, ONECUT1, WDR72, UNC13C, C15orf15, RAB27A, PIGB, CCPG1,

DYX1C1, PYGO1, PRTG, NEDD4, RFXDC2, TEX9, MNS1, SUHW4, TCF12, CGNL1, Gcom1, GRINL1A, ALDH1A2, AQP9

V_0188_LC16238_Iafrate et al. (2004), V_0189_LC16389_Iafrate et al. (2004), V_0190_LC16450_Iafrate et al. (2004), V_0192_LC16541_Iafrate et al. (2004), V_0785_LC16202_Sharp et al. (2005), V_0786_LC16331_Sharp et al. (2005), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp

et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2194_LC16374_Locke et al. (2006), V_2195_LC16389_Locke et al. (2006), V_2196_LC16398_Locke et al. (2006), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al.


V_4908_LC16467_Wong et al. (2007), V_4909_LC16491_Wong et al. (2007), V_4910_LC16491_Wong et al. (2007), V_4911_LC16537_Wong et al. (2007) q14-q26.3

16 11139 33328324 RP11-344L6 RP13-392N17 324 33.317185 -0.708251469

POLR3K, C16orf33, RHBDF1, MPG, C16orf35, HBZ, HBAP2, HBA2, HBA1, HBQ1, LUC7L, C16orf9, RGS11, ARHGDIG, PDIA2, AXIN1, MRPL28, TMEM8, LOC441743, NME4, DECR2, RAB11FIP3, SOLH, LOC146325, FLJ36208, PIGQ, RAB40C, WFIKKN1, MGC13114, MGC15416, KIAA1924, RHOT2, RHBDL1, STUB1, LOC339123, WDR24, FBXL16, METRN, C16orf24, C16orf25, HAGHL, NARFL, MSLN, MPFL, RPUSD1, CHTF18, GNG13, LOC388199, TMEM112, SOX8,

SSTR5, C1QTNF8, CACNA1H, TPSG1, TPSB2, TPSAB1, TPSD1, UBE2I, BAIAP3, MGC24381, GNPTG, C16orf28, UNKL, LOC283951, CLCN7, LOC390667, TELO2, IFT140, C16orf30, CRAMP1L, C16orf34, MAPK8IP3, NME3, MRPS34, EME2, SPSB3, NUBP2, IGFALS, HAGH, FAHD1, MGC35212, HS3ST6, SEPX1, RPL3L, NDUFB10, LOC91561, RPS2, RNF151, TBL3, NOXO1, GFER, SYNGR3, ZNF598, SLC9A3R2, NTHL1, TSC2, PKD1, RAB26, TRAF7, CASKIN1, GBL,

MGC21830, LOC283871, E4F1, DNASE1L2, DCI, RNPS1, ABCA3, CCNF, C16orf59, NTN2L, KIAA1171, ATP6V0C, AMDHD2, CP-23, PDPK1, LOC283874, KCTD5, PRSS27, SRRM2, TCEB2, PRSS33, PRSS21, LOC124220, PRSS22, LOC114984, FLYWCH1, KREMEN2, PAQR4, PKMYT1, CLDN9, CLDN6, TNFRSF12A, HCFC1R1, THOC6, MMP25, IL32, ZNF206, ZNF205, ZNF213, OR1F1, ZNF200, MEFV, ZNF263, TIGD7, ZNF75A, OR2C1, ZNF434, ZNF174, ZNF597,

FLJ14154, LOC646174, CLUAP1, NOD3, BTBD12, DNASE1, TRAP1, CREBBP, ADCY9, TFAP4, GLIS2, Magmas, CORO

V_0195_LC16821_Iafrate et al. (2004), V_0793_LC16761_Sharp et al. (2005), V_0794_LC16821_Sharp et al. (2005), V_0795_LC16821_Sharp et al. (2005), V_2203_LC16733_Locke et al. (2006), V_2204_LC16736_Locke et al. (2006), V_2205_LC16736_Locke et al. (2006), V_2206_LC16761_Locke et al. (2006), V_2207_LC16761_Locke et al. (2006), V_2208_LC16802_Locke

et al. (2006), V_2209_LC16817_Locke et al. (2006), V_2210_LC16821_Locke et al. (2006), V_2211_LC16821_Locke et al. (2006), V_2212_LC16821_Locke et al. (2006), V_2213_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4779_LC16593_Wong et al. (2007), V_4912_LC16593_Wong et al.


V_4922_LC16660_Wong et al. (2007), V_4923_LC16730_Wong et al. (2007), V_4924_LC16730_Wong et al. (2007), V_4925_LC16730_Wong et al. (2007), V_4926_LC16734_Wong et al. (2007), V_4927_LC16736_Wong et al. (2007), V_4928_LC16736_Wong et al. (2007), V_4929_L p13.3-p11.2

16 33818226 77065819 RP11-448M4 RP11-619H13 378 43.247593 -1.103305766

LOC649159, FLJ43980, SHCBP1, VPS35, ORC6L, MLCK, LOC388272, GPT2, DNAJA2, NETO2, ITFG1, PHKB, ABCC12, ABCC11, LONPL, SIAH1, N4BP1, CBLN1, MGC33367, ZNF423, C16orf69, FLJ20718, PAPD5, ADCY7, BRD7, NKD1, SLIC1, CARD15, CYLD, SALL1, TNRC9, CHD9, RBL2, FTS, KIAA1005, FTO, IRX3, IRX5, IRX6, MMP2, AYTL1, CAPNS2, SLC6A2, CES1, CES7, GNAO1, AMFR, NUDT21, OGFOD1, BBS2, MT4, MT3, MT2A, MT1E, MT1M, MT1A, MT1B,

MT1F, MT1G, MT1H, MTE, MT1X, NUP93, SLC12A3, HERPUD1, CETP, NOD27, CPNE2, NIP30, RSPRY1, ARL2BP, TM4SF11, CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4, MGC10992, GPR114, GPR56, GPR97, CCDC135, KATNB1, KIFC3, CNGB1, TEPP, ZNF319, C16orf57, MMP15, GTL3, CSNK2A2, HSPC065, Klkbl4, FLJ13912, NDRG4, SETD6, CNOT1, FLJ10815, GOT2, CDH8, CDH11, CDH5, TK2, CKLF, CMTM1, CMTM2, CMTM3, CMTM4, DYNC1LI2,

APPBP1, CA7, PDP2, CDH16, RRAD, FAM96B, CES2, FLJ21736, FLJ37464, CBFB, LIN10, MGC4655, TRADD, FBXL8, HSF4, NOL3, LOC653319, LOC283849, E2F4, ELMO3, LRRC29, HSPC171, FHOD1, SLC9A5, PLEKHG4, LRRC36, CGI38, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, FAM65A, CTCF, RLTPR, ACD, PARD6A, C16orf48, LOC388284, MGC11335, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, RCD-8, UNQ2446, PSKH1, CTRL, PSMB10, LCAT, SLC12A4,

DPEP3, DPEP2, DDX28, DUS2L, NFATC3, RBM35B, LYPLA3, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90, CDH3, CD

V_0196_LC16821_Iafrate et al. (2004), V_0197_LC16821_Iafrate et al. (2004), V_0198_LC16863_Iafrate et al. (2004), V_0678_LC16967_Sharp et al. (2005), V_0797_LC16959_Sharp et al. (2005), V_2043_LC16967_Locke et al. (2006), V_2216_LC16959_Locke et al. (2006), V_4949_LC16821_Wong et al. (2007), V_4950_LC16821_Wong et al. (2007), V_4951_LC16821_Wong


(2007), V_4961_LC16934_Wong et al. (2007), V_4962_LC16939_Wong et al. (2007), V_4963_LC16959_Wong et al. (2007), V_4964_LC16959_Wong et al. (2007), V_4965_LC16963_Wong et al. (2007), V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007) p11.2-q23.1

16 77465669 88686715 RP11-236A13 RP11-665E3 174 11.221046 -0.929414289

WWOX, MAF, DYNLRB2, CDYL2, C16orf61, C16orf60, ASCIZ, C16orf46, GCSH, PKD1L2, BCMO1, GAN, CMIP, PLCG2, HSPC105, HSD17B2, MPHOSPH6, CDH13, HSBP1, MLYCD, OSGIN1, EFCBP2, LOC146167, MBTPS1, HSDL1, LRRC50, TAF1C, LOC161931, KCNG4, WFDC1, ATP2C2, KIAA1609, COTL1, C16orf44, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, KIAA0182, Pfs2, MGC17624, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1,

FBXO31, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZFPM1, FLJ45530, NHN1, IL17C, CYBA, MVD, SNAI3, RNF166, LOC348180, FAM38A, FLJ45121, FLJ40448, CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3, LOC197322, CDH15, ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A, PCOLN3, C16orf55, CDK10, MGC26885, C16orf7, ZNF276, FANCA, SPIRE2, NULP1, MC1R, TUBB3, FLJ20186, MGC16385, DBNDD1, MGC3101,

GAS8, C16orf3, PRDM7

V_0199_LC17071_Iafrate et al. (2004), V_0200_LC17076_Iafrate et al. (2004), V_4968_LC17023_Wong et al. (2007), V_4969_LC17043_Wong et al. (2007), V_4970_LC17076_Wong et al. (2007), V_4971_LC17076_Wong et al. (2007), V_4972_LC17076_Wong et al. (2007), V_4973_LC17076_Wong et al. (2007), V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong

et al. (2007), V_4976_LC17076_Wong et al. (2007), V_4977_LC17076_Wong et al. (2007), V_4978_LC17076_Wong et al. (2007) q23.1-q24.317 18110986 18697440 RP11-147H17 RP11-466H1 8 0.586454 -0.629065016 TOP3A, SMCR8, SHMT1, LOC654346, LOC220594, FLJ36492, FLJ40244, TRIM70, FBXW10, FAM18B V_2219_LC17388_Locke et al. (2006), V_4992_LC17388_Wong et al. (2007), V_4993_LC17390_Wong et al. (2007) p11.217 18990988 20683824 RP11-330C20 RP11-572B16 25 1.692836 -0.534957072 EPN2, EPPB9, MAPK7, MFAP4, ZNF179, FLJ10847, ALDH3A2, FLJ31196, ALDH3A1, ULK2, AKAP10, SPECC1, LOC284194 V_4994_LC17394_Wong et al. (2007), V_4995_LC17400_Wong et al. (2007), V_4996_LC17400_Wong et al. (2007), V_4997_LC17400_Wong et al. (2007) p11.2

17 25315155 28876981 RP11-205K5 RP11-745H22 39 3.561826 -0.501976886FLJ46247, CCDC55, SLC6A4, BLMH, TMIGD, CPD, GOSR1, DKFZP434O047, CRLF3, C17orf41, C17orf42, CENTA2, RNF135, NF1, OMG, EVI2B, EVI2A, RAB11FIP4, C17orf79, C17orf40, SUZ12, LRRC37B, RHOT1, RHBDL3, C17orf75,

ZNF207, PSMD11, CDK5R1, MYO1D, TMEM98, SPACA3, ACCN1 V_4999_LC17431_Wong et al. (2007) q11.2-q12

17 73545410 78398677 RP13-783G20 RP11-424C10 44 4.853267 -0.623613027

TNRC6C, TMC6, TMC8, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17, DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713, ENPP7, CBX2, CBX8, CBX4, TBC1D16, GAA, DDX48, CARD14, SGSH, SLC26A11, KIAA1618, C17orf27, FLJ35220, NPTX1, KIAA1303, CHMP6, BAIAP2, AATK, AZI1, C17orf56, MGC15523, C17orf55, TMEM105, BAHCC1, ACTG1, FSCN2, C17orf70, NPLOC4, TSPAN10, PDE6G, LOC339229, ARL16, HGS, MRPL12, SLC25A10, DYSFIP1, P4HB, ARHGDIA, THOC4, ANAPC11, NPB, PCYT2, SIRT7, MAFG, PYCR1, NOTUM, ASPSCR1, STRA13, LRRC45, RAC3, DCXR, RFNG, GPS1, DUS1L, FASN, CCDC57, SLC16A3, CSNK1D,

CD7, SECTM1, FLJ35767, UTS2R, FLJ22222, HEXDC, C17orf62, NARF, FOXK2, WDR45L, RAB40B, FN3KRP, FN3K, TBCD, ZNF750

V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et al. (2006), V_4327_LC17763_Wong et al. (2007), V_5033_LC17737_Wong et al. (2007), V_5034_LC17743_Wong et al. (2007), V_5035_LC17750_Wong

et al. (2007), V_5036_LC17763_Wong et al. (2007), V_5039_LC17763_Wong et al. (2007), V_5040_LC17763_Wong et al. (2007), V_5041_LC17763_Wong et al. (2007), V_5042_LC17763_Wong et al. (2007), V_5043_LC17763_Wong et al. (2007) q25.3

19 75953 8709106 RP11-505K21 RP11-1077G12 79 8.633153 -0.546718315

FLJ45445, PPAP2C, KIAA1193, THEG, SHC2, C19orf19, MADCAM1, C19orf20, CDC34, GZMM, BSG, HCN2, POLRMT, FGF22, RNF126, FSTL3, PRSSL1, PALM, C19orf21, PTBP1, PRG2, AZU1, PRTN3, ELA2, CFD, THRAP5, C19orf22, KISS1R, ARID3A, WDR18, GRIN3B, C19orf6, CNN2, ABCA7, HMHA1, POLR2E, GPX4, KIAA0963, STK11, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, LOC401019, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5, RKHD1, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4, LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1,

SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R, C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK, KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24,

EBI3, CCDC94, SHD, MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2, KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30, FEM1A, TICAM1, M6PRBP1, ARRDC5, C19orf31, UHRF1, JMJD2B,

V_0808_LC18794_Sharp et al. (2005), V_2237_LC18671_Locke et al. (2006), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et al. (2006), V_5065_LC18671_Wong et al. (2007), V_5066_LC18671_Wong et al. (2007), V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007), V_5069_LC18671_Wong et al. (2007), V_5070_LC18730_Wong


(2007), V_5080_LC18794_Wong et al. (2007) p13.3-p13.2

19 8751188 24222706 RP13-622L9 RP11-630I12 172 15.471518 -0.627150054

ZNF558, MBD3L1, MUC16, OR1M1, OR7G2, OR7G1, OR7G3, ZNF317, OR7D2, OR7D4, OR7E24, ZNF699, ZNF559, ZNF177, ZNF266, ZNF560, ZNF426, ZNF121, ZNF561, ZNF562, LOC162993, FBXL12, UBL5, PIN1, OLFM2, COL5A3, RDH8, LOC388503, FLJ11286, ANGPTL6, PPAN, PPAN-P2RY11, P2RY11, EIF3S4, DNMT1, EDG5, MRPL4, ICAM1, ICAM4, ICAM5, MGC19604, RAVER1, ICAM3, TYK2, CDC37, PDE4A, KEAP1, EDG8, ATG4D, FLJ12949, CDKN2D,

AP1M2, SLC44A2, ILF3, QTRT1, DNM2, TMED1, CARM1, YIPF2, LOC90580, SMARCA4, LDLR, SPBC24, ANKRD25, DOCK6, LOC55908, TSPAN16, RAB3D, UNQ501, LOC126075, LPPR2, FLJ35119, EPOR, RGL3, MGC20983, PRKCSH, ELAVL3, ZNF653, SITPEC, CNN1, ELOF1, ACP5, ZNF627, LOC401898, HSZFP36, ZNF441, ZNF491, ZNF439, ZNF69, ZNF700, ZNF440L, ZNF433, LOC729747, ZNF20, ZNF625, ZNF136, ZNF44, ZNF563, ZNF442, ZNF443, ZNF709, ZNF564, ZNF490, FLJ90396, MAN2B1, C19orf56, MORG1, DHPS, FBXW9, TNPO2, MGC2803, ASNA1, BEST2, HOOK2, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, DNASE2, KLF1, GCDH, FARSA, CALR, RAD23A, GADD45GIP1,

DAND5, NFIX, LYL1, TRMT1, BTBD14B, STX10, IER2, CACNA1A, MGC10471, MGC3207, HSPC023, ZSWIM4, MGC11271, CC2D1A, FLJ23447, LOC90379, RFX1, RLN3, IL27RA, SAMD1, PRKACA, ASF1B, LPHN1, CD97, DDX39, PKN1,

V_0220_LC18794_Iafrate et al. (2004), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_2242_LC18908_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong


(2007), V_5095_LC18908_Wong et al. (2007) p13.2-p1219 36871853 37639482 RP11-109B11 RP11-449C9 8 0.767629 -0.497121881 ZNF507, MGC35440, DPY19L3 q12-q13.11

20 32231487 35971325 RP11-313J10 RP11-727D18 35 3.739838 -0.69251968

ASIP, AHCY, ITCH, DYNLRB1, MAP1LC3A, CDC91L1, TP53INP2, NCOA6, GGTL3, ACSS2, GSS, MYH7B, TRPC4AP, C20orf31, PROCR, MMP24, ITGB4BP, C20orf128, C20orf44, GDF5, CEP250, ERGIC3, SPAG4, CPNE1, RBM12, NFS1, C20orf52, RNPC2, PHF20, SCAND1, C20orf152, EPB41L1, C20orf4, DLGAP4, MYL9, TGIF2, C20orf24, SLA2, NDRG3, C20orf172, C20orf117, C20orf118, SAMHD1, RBL1, C20orf132, RPN2, GHRH, MANBAL, SRC, BLCAP, NNAT,

FLJ42133, CTNNBL1, C20orf102 V_5134_LC19585_Wong et al. (2007), V_5135_LC19601_Wong et al. (2007), V_5136_LC19617_Wong et al. (2007) q11.22-q11.23

20 41406987 44287243 RP11-523P9 RP11-373A15 27 2.880256 -0.573032712

SFRS6, L3MBTL, SGK2, IFT52, MYBL2, FAM112A, C20orf100, JPH2, C20orf111, GDAP1L1, C20orf142, R3HDML, HNF4A, C20orf121, SERINC3, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35, C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13, SPINT4, WFDC3, DNTTIP1, UBE2C, TNNC2,

C20orf161, SNX21, ACOT8, ZSWIM3, ZSWIM1, C20orf165, NEURL2, CTSA, PLTP, C20orf67, ZNF335, MMP9, SLC12A5, NCOA5, CD40, CDH22 q13.11-q13.1220 45010893 47335590 CTD-2225N10 RP11-746F15 13 2.324697 -0.696376501 EYA2, PRKCBP1, NCOA3, SULF2, PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1 V_2251_LC19741_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007) q13.12-q13.13

21 9749033 10096956 RP11-289G8 RP11-733G18 5 0.347923 -0.502778723 TPTE, BAGE2, BAGE3, BAGE4, BAGE5, BAGEV_2253_LC20054_Locke et al. (2006), V_5151_LC20054_Wong et al. (2007), V_5152_LC20054_Wong et al. (2007), V_5153_LC20054_Wong et al. (2007), V_5154_LC20054_Wong et al.

(2007), V_5155_LC20054_Wong et al. (2007), V_5156_LC20054_Wong et al. (2007) p11.2-p11.121 22555603 23797076 RP11-692E3 RP11-42M18 13 1.241473 -0.37119117 q21.1-q21.221 27237595 29726441 RP11-578G12 RP11-781A17 23 2.488846 -0.280841254 ADAMTS5, HEMK2, ZNF294, C21orf6, USP16, CCT8, C21orf7, BACH1 q21.3

22 14440103 15895815 CTD-2177M20 RP11-453H13 12 1.455712 -0.439575262 ACTBL1, OR11H1, CESK1, XKR3, GAB4V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007), V_5165_LC20342_Wong et al.

(2007), V_5166_LC20342_Wong et al. (2007) q11.1

22 19847992 20448350 RP11-818K20 RP11-47L18 5 0.600358 -0.495461676 HIC2, LOC220686, LOC375133, UBE2L3, LOC150223, FLJ36046, SDF2L1, PPIL2, YPEL1V_0816_LC20342_Sharp et al. (2005), V_0817_LC20342_Sharp et al. (2005), V_2262_LC20342_Locke et al. (2006), V_2263_LC20342_Locke et al. (2006), V_5170_LC20342_Wong et al.

(2007), V_5171_LC20342_Wong et al. (2007), V_5172_LC20342_Wong et al. (2007), V_5173_LC20342_Wong et al. (2007) q11.21

23 550000 134471806 RP13-76L22 CTD-2305L24 1195 133.921806 -1.375460763

XG, GYG2, ARSD, ARSE, ARSH, ARSF, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX-C, KAL1, FAM9A, FAM9B, TBL1X, GPR143, APXL, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2,

S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4,

MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41,

ARAF, SYN1, TIMP1, CFP, ELK1, UXT, ZNF81, ZNF21, ZNF630, SSX6, LOC389852, SPACA5B, SSX5, SSX1, SSX9, SS

V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0243_LC20866_Iafrate et al. (2004), V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004),

V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004), V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. (2004), V_0362_LC20686_Shaw-Smith et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005),

V_0822_LC20844_Sharp et al. (2005), V_0823_LC20844_Sharp et al. (2005), V_0824_LC20844_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006), V_2276_LC20844_Locke et al. (2006), V_2277_LC20844_Locke et al. (2006), V_2278_LC20844_Locke et al. (2006), V_2279_LC20881_Locke

et al. (2006), V_2280_LC21120_Locke et al. (2006) p22.33-q26.323 135535297 137567735 RP11-504F6 RP11-98B14 17 2.032438 -0.67215834 CD40LG, ARHGEF6, RBMX, GPR101, ZIC3, FGF13 q26.323 138831460 139366860 RP11-395D13 RP11-751D22 4 0.5354 -0.467554248 LOC347487 q27.123 139981265 141308983 RP11-288M21 RP11-435F11 19 1.327718 -0.738392226 LDOC1, SPANXC, SPANXA2, SPANXA1, SPANXD, SPANXE, MAGEC3, MAGEC1, MAGEC2 V_0255_LC21142_Iafrate et al. (2004), V_0827_LC21138_Sharp et al. (2005), V_2282_LC21138_Locke et al. (2006) q27.1-q27.223 141624839 142046534 RP11-669N21 RP11-585O13 3 0.421695 -0.722333795 SPANX-N4 q27.2-q27.323 142575463 145877164 RP11-29O6 RP11-632J20 34 3.301701 -0.973583639 SPANX-N2, UBE2NL, SPANXN1, SLITRK2, CXorf1 q27.323 150187874 150602962 RP11-607J16 RP11-484M11 3 0.415088 -0.552024729 LOC203547, PASD1 q2823 150888783 151595970 RP11-269E9 RP13-586H7 9 0.707187 -0.665844667 GABRE, MAGEA5, MAGEA10, GABRA3, GABRQ q28

23 152675400 154906914 RP11-398P14 RP11-1245L19 27 2.231514 -0.675415044PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ, ATP6AP1, GDI1,

FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, CTAG1A, CTAG1B, CTAG2, GAB3, DKC1, MPP1, F8, FUNDC2, MTCP1, CXorf53, VBP1, RAB39B, CLIC2, F8A1, F8A2, F8A3, H2AFB1, H2AFB3, H2AFB2, TMLHE V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q2824 482246 7593034 CTD-2584M8 CTD-2533J17 59 7.110788 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y, PRKY V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 117317966 120432218 RP11-715G3 RP11-723D17 28 3.114252 1.000569273 PTGFRN, IGSF2, TTF2, TRIM45, VTCN1, MAN1A2, FAM46C, GDAP2, WDR3, SPAG17, TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2 V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007) p13.1-p121 143665914 143842858 RP11-184I13 RP11-63B18 5 0.176944 0.661362252 PDE4DIP, SEC22B V_0685_LC0752_Sharp et al. (2005), V_4249_LC0752_Wong et al. (2007) q21.1

2 94973470 132069288 RP11-645D10 RP11-24O13 345 37.095818 1.584707306

MAL, MRPS5, ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A, TRIM43, LOC150763, ADRA2B, ASTL, DUSP2, STARD7, LOC285033, TMEM127, WDR39, ASCC3L1, KIAA1754L, BRRN1, LINCR, ARID5A, FLJ10081, LOC90342, LMAN2L, CNNM4, CNNM3, ANKRD23, ANKRD39, SEMA4C, LOC51252, DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B, ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A, MGC42367, TSGA10, C2orf15, LIPT1,

LOC129531, MRPL30, LYG2, LOC129530, TXNDC9, EIF5B, REV1L, AFF3, LONRF2, CHST10, NMS, PDCL3, NPAS2, RPL31, C2orf29, RNF149, CREG2, MAP4K4, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294, POU3F3, MRPS9, GPR45, TGFBRAP1, MGC5509, FHL2, NCK2, ECRG4, UXS1, ST6GAL2, SLC5A7, SULT1C3, SULT1C1, SULT1C2, GCC2, LIMS1, RANBP2, FLJ32745, EDAR, LOC729164, C2orf26, MALL, NPHP1,

LIMS3, RGPD5, RGPD7, BUB1, ACOXL, BCL2L11, ANAPC1, MERTK, TMEM87B, FLJ37440, ZC3H8, ZC3H6, TTL, POLR1B, CHCHD5, SLC20A1, FLJ40629, IL1A, IL1B, IL1F7, IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8, CBWD2, FOXD4L1, RABL2A, SLC35F5, ACTR3, DPP10, DDX18, FLJ10996, INSIG2, EN1, MARCO, C1QL2, STEAP3, LOC130355, DBI, TMEM37, SCTR, MGC33657, MGC10993, PTPN4, EPB41L5, RALB, INHBB, GLI2, TFCP2L1, CLASP1,

V_0021_LC2111_Iafrate et al. (2004), V_0024_LC2234_Iafrate et al. (2004), V_0025_LC2234_Iafrate et al. (2004), V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005),V_0692_LC2122_Sharp et al. (2005), V_0693_LC2234_Sharp et al. (2005), V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke et al. (2006), V_4299_LC2057_Wong et al. (2007), V_4300_LC2064_Wong et al. (2007), V_4301_LC2072_Wong et al. (2007), V_4302_LC2081_Wong et al. (2007), V_4303_LC2134_Wong et al. (2007), V_4304_LC2184_Wong et al. (2007),

V_4305_LC2229_Wong et al. (2007), V_4306_LC2234_Wong et al. (2007) q11.1-q21.12 132821463 133774459 RP11-412C19 RP11-736B1 8 0.952996 0.92546804 GPR39, LYPD1, NAP5 V_4308_LC2246_Wong et al. (2007) q21.2

7 57058234 61797715 RP11-511E2 RP11-34I22 17 4.739481 0.535493548 V_4538_LC9545_Wong et al. (2007), V_4539_LC9545_Wong et al. (2007), V_4540_LC9545_Wong et al. (2007), V_5063_LC9543_Wong et al. (2007), V_0375_LC9545_Bejjani et al. (2005) p11.2-q11.217 62369882 62974749 RP11-1162A20 RP11-500H11 9 0.604867 0.579433942 q11.2117 41834276 42244748 RP11-57A24 RP11-84A7 3 0.410472 1.01291071 LOC474170, ARL17, NSF, WNT3 V_0207_LC17522_Iafrate et al. (2004), V_0803_LC17522_Sharp et al. (2005), V_2228_LC17522_Locke et al. (2006), V_5014_LC17522_Wong et al. (2007) q21.31-q21.3219 33507712 36580910 RP11-719O4 RP11-549E8 39 3.073198 2.025472934 UQCRFS1, POP4, PLEKHF1, C19orf12, CCNE1, C19orf2, ZNF536, TSHZ3 q1220 29297109 30100964 RP11-559K10 RP11-71I2 8 0.803855 0.86474274 DEFB115, DEFB116, DEFB118, DEFB119, DEFB121, DEFB123, DEFB124, REM1, HM13, ID1, COX4I2, BCL2L1, TPX2, MYLK2, FKHL18, DUSP15, TTLL9, PDRG1, XKR7, C20orf160 V_5131_LC19539_Wong et al. (2007) q11.2120 30932284 32294344 RP11-232L16 RP11-318O16 16 1.36206 0.880486818 SPAG4L, BPIL1, BPIL3, C20orf185, C20orf186, C20orf70, C20orf71, PLUNC, C20orf114, CDK5RAP1, SNTA1, CBFA2T2, APBA2BP, C20orf144, C20orf134, E2F1, PXMP4, ZNF341, CHMP4B, RALY, EIF2S2 V_5133_LC19567_Wong et al. (2007) q11.21-q11.2220 47317703 47958110 RP11-140I7 RP11-444K9 4 0.640407 0.8041508 ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2 q13.1320 50785613 52944036 RP11-287I16 CTD-2014A12 26 2.158423 1.775561826 TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4, DOK5 V_0226_LC19822_Iafrate et al. (2004), V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2

20 54873605 58194562 RP11-492C4 RP11-56D21 31 3.320957 1.733267622BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D,

C20orf177, CDH26, FLJ33860 q13.31-q13.33

20 60809452 61326392 RP11-325F17 RP11-402J8 6 0.51694 0.939490155 NTSR1, C20orf20, OGFR, COL9A3, TCFL5, DIDO1, C20orf11, C20orf59, BHLHB4, YTHDF1V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al.

(2007) q13.3320 61927525 62434349 RP11-799O9 RP11-350G15 5 0.506824 1.086008868 C20orf135, TPD52L2, DNAJC5, UCKL1, GM632, SAMD10, PRPF6, LOC284739, SOX18, TCEA2, RGS19, OPRL1, LOC198437, NPBWR2, MYT1, PCMTD2 V_2252_LC19985_Locke et al. (2006) q13.33

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands2 94973470 96126973 RP11-645D10 RP11-401C13 12 1.153503 1.584707306 MAL, MRPS5, ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A, TRIM43, LOC150763 V_4299_LC2057_Wong et al. (2007) q11.1-q11.22 96942431 98788598 RP11-219H23 RP11-692C8 19 1.846167 1.225374296 DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B, ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A, MGC42367 q11.22 99280912 100356468 RP11-63E1 RP11-285I4 8 1.075556 1.082762618 LOC129530, TXNDC9, EIF5B, REV1L, AFF3, LONRF2 q11.219 33507712 36580910 RP11-719O4 RP11-549E8 39 3.073198 2.025472934 UQCRFS1, POP4, PLEKHF1, C19orf12, CCNE1, C19orf2, ZNF536, TSHZ3 q1220 54989120 55264472 RP11-44A6 RP11-560A15 3 0.275352 1.201689699 BMP7 q13.3120 55873878 58194562 RP11-464H20 RP11-56D21 22 2.320684 1.733267622 C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D, C20orf177, CDH26, FLJ33860 q13.31-q13.33



KOC7C


2 87197001 87846427 RP11-223J6 CTD-2007A8 13 0.649426 0.56927728 MGC4677, PLGLB2, PLGLB1, RGPD2V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et al. (2007), V_4293_LC2035_Wong et al. (2007),

V_4294_LC2035_Wong et al. (2007) p11.2

7 65529244 75345977 RP11-618F10 RP11-812L15 120 9.816733 0.600690408KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28,

ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24

V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007),V_4542_LC9602_Wong et al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007),

V_4545_LC9609_Wong et al. (2007) q11.21-q11.2311 1374763 1795184 RP13-583J20 RP11-652F20 3 0.420421 0.354533934 BRSK2, HCCA2, DUSP8, KRTAP5-1, KRTAP5-2, KRTAP5-3, KRTAP5-4, KRTAP5-5, KRTAP5-6, CTSD V_4728_LC12896_Wong et al. (2007), V_4729_LC12896_Wong et al. (2007) p15.5


1 16638358 17153536 RP11-777P8 RP11-497I3 7 0.515178 -0.422293886 NECAP2, NBPF1, LOC440570, CROCC

V_0005_LC0177_Iafrate et al. (2004), V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al.(2006), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007), V_4209_LC0177_Wong et al.(2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al.

(2007) p36.134 5922696 7364917 RP11-764F17 RP11-620M13 15 1.442221 -0.798431363 CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2 V_2067_LC4192_Locke et al. (2006) p16.1

8 7041464 7339057 RP11-738O21 RP11-739E3 3 0.297593 -0.810012657 PJCG6, DEFB104A, DEFB104B

V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al.(2005), V_0736_LC10380_Sharp et al. (2005), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke

et al. (2006), V_2119_LC10380_Locke et al. (2006), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007) p23.1

8 86620595 86898973 RP11-509F16 RP11-13P8 5 0.278378 -0.635823436 REXO1L1

V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong

et al. (2007), V_4605_LC10727_Wong et al. (2007) q21.2

16 31864841 33829917 RP11-545B4 CTD-2188K3 20 1.965076 -0.564682076 TP53TG3

V_0195_LC16821_Iafrate et al. (2004), V_0794_LC16821_Sharp et al. (2005), V_0795_LC16821_Sharp et al.(2005), V_0796_LC16821_Sharp et al. (2005), V_2210_LC16821_Locke et al. (2006), V_2211_LC16821_Locke

et al. (2006), V_2212_LC16821_Locke et al. (2006), V_2213_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et al. (2006), V_2215_LC16821_Locke et al. (2006), V_4440_LC16821_Wong et al.

(2007), V_4943_LC16821_Wong et al. (2007), V_4944_LC16821_Wong et al. (2007), V_4945_LC16821_Wong et al. (2007), V_4946_LC16821_Wong et al. (2007), V_4947_LC16821_Wong et al. (2007),

V_4948_LC16821_Wong et al. (2007) p11.216 76618051 76923722 RP11-599N21 RP11-737J9 6 0.305671 -0.629060628 CLEC3A, WWOX q23.1


chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobandsAmplification threshold = 0.8


Losses

Gains

KK

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 79564467 82431016 CTD-2017D1 RP11-403N19 27 2.866549 0.465866747 LPHN2 V_4232_LC0542_Wong et al. (2007) p31.11 87722823 88982596 RP11-338K19 RP11-382A2 15 1.259773 0.779853622 PKN2 p22.3-p22.21 97680296 98770104 RP11-626C12 RP11-775F5 9 1.089808 0.824391172 DPYD V_4236_LC0622_Wong et al. (2007) p21.31 104893141 108385498 RP11-341D24 RP11-272G8 41 3.492357 0.72208628 PRMT6, NTNG1, VAV3 V_0682_LC0656_Sharp et al. (2005), V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007) p21.1-p13.3

1 111290448 148331279 RP11-598G14 RP11-793H3 144 37.040831 1.073585296

C1orf103, TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C1orf88, OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A, C1orf183, DDX20, KCND3, CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC, PPM1J, FAM19A3, SLC16A1, LRIG2, MAGI3, PHTF1, RSBN1, PTPN22, C1orf178, AP4B1, DCLRE1B, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, DENND2C, AMPD1, NRAS, CSDE1, SIKE, SYCP1, TSHB, TSPAN2, NGFB, VANGL1, CASQ2, NHLH2, SLC22A15, C1orf161, ATP1A1, CD58, IGSF3, CD2, PTGFRN, IGSF2, TTF2, TRIM45, VTCN1, MAN1A2, FAM46C, GDAP2, WDR3, SPAG17,

TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2, LOC440607, NBPF20, PDE4DIP, SEC22B, NOTCH2NL, HFE2, TXNIP, POLR3GL, ANKRD34, LIX1L, RBM8A, PEX11B, ITGA10, ANKRD35, PIAS3, NUDT17, POLR3C, ZNF364, CD160, PDZK1, FAM108A2, PRKAB2, FMO5, CHD1L, BCL9, ACP6, GJA5, GJA8, GPR89A, NBPF11, NBPF14, NBPF10, NBPF15, LOC388692, LOC440686, PPIAL4, FCGR1A, HIST2H2BF, H2A/R, HIST2H2AA, H3/o, HIST2H3C, H4/o, HIST2H4, HIST2H2BE, HIST2H2AC, HIST2H2AB, BOLA1, SV2A, SF3B4, MTMR11,

OTUD7B, VPS45A

V_0013_LC0711_Iafrate et al. (2004), V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_2052_LC0752_Locke et al. (2006), V_4242_LC0704_Wong et al. (2007), V_4243_LC0729_Wong et al. (2007), V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007), V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007), V_4251_LC0752_Wong et al. (2007), V_4252_LC0752_Wong et al. (2007), V_4253_LC0752_Wong et al. (2007), V_4254_LC0752_Wong et al. (2007),

V_4255_LC0752_Wong et al. (2007), V_4256_LC0752_Wong et al. (2007) p13.3-q21.21 149888055 150664148 RP11-114B18 RP11-440D12 7 0.776093 1.026280369 SNX27, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN q21.3

1 150782752 152092704 RP11-92M2 RP11-216N14 10 1.309952 0.980799263LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9,

S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4, S100A3, S100A2, S100A16, S100A14, S100A13, S100A1, C1orf77, SNAPAP, ILF2, NPR1, INTS3, SLC27A3, GATAD2B q21.31 152680290 153200297 RP11-719O24 RP11-196D4 3 0.520007 0.63083575 IL6R, SHE, TDRD10, UBE2Q1, CHRNB2, ADAR, KCNN3, PMVK, PBXIP1, PYGO2 q21.3

1 155146025 246944046 RP11-384J22 RP11-378I20 874 91.798021 1.307334919

PEAR1, C1orf92, ARHGEF11, FLJ16478, ETV3, FCRL5, FCRL4, FCRL3, FCRL2, FCRL1, CD5L, KIRREL, CD1D, CD1A, CD1C, CD1B, CD1E, OR10T2, OR10K2, OR10K1, OR10R2, OR6Y1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, IFI16, AIM2, IGSF4B, DARC, FCER1A, OR10J3, OR10J1, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, VSIG8, CCDC19, TAGLN2, IGSF9, SLAMF9, PIGM, KCNJ10, KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1, PEA15, WDR42A, PEX19, COPA, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, ITLN2, F11R, USF1, ARHGAP30, PVRL4, KARCA1, PFDN2, NIT1, DEDD, UFC1, USP21, PPOX, B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, NR1I3, MPZ, SDHC, C1orf192, FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2, DUSP12, ATF6,

OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52, MGST3, ALDH9A1, TMCO1, UCK2, FAM78B, POGK, TADA1L, C1orf32, MAEL, GPA33, DUSP27, POU2F1, CD247, CREG1, RCSD1, MPZL1, SAC, BRP44, IQWD1, GPR161, TIPRL, SFT2D2, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BLZF1, C1orf114, SLC19A2, F5, SELP, SELL, SELE, C1orf156, C1orf112, SCYL3, KIFAP3, SCYL1BP1, PRRX1, C1orf129, FMO3, FMO2, FMO1, FMO4, BAT2D1, MYOC, VAMP4, KIAA0859, DNM3, C1orf105, PIGC,

C1orf9, FASLG, TNFSF18, TNFSF4, PRDX6, SLC9A11, ANKRD45, KLHL20, C1orf155, DARS2, ZBTB37, SERPINC1, RC3H1, GPR52, RABGAP1L, CAC

V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al. (2006), V_2056_LC1401_Locke et al. (2006), V_2091_LC1120_Locke et al. (2006), V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007), V_4264_LC0975_Wong et al. (2007), V_4265_LC0992_Wong et al. (2007), V_4266_LC1019_Wong et al. (2007), V_4267_LC1097_Wong et al. (2007), V_4268_LC1117_Wong et al. (2007), V_4269_LC1125_Wong et al. (2007), V_4270_LC1176_Wong et al. (2007),

V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et al. (2007) q23.1-q442 39840163 41854862 RP11-454P5 RP11-173M7 14 2.014699 0.716776753 THUMPD2, SLC8A1 p22.1-p212 211734934 213042553 RP11-293L17 RP11-694B12 12 1.307619 0.604651531 ERBB4 q342 213295958 214010488 RP11-59D12 RP11-38N8 6 0.71453 0.544028199 IKZF2, SPAG16 V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007) q342 218596839 219110147 RP11-50E4 RP11-424L12 4 0.513308 0.266329382 FLJ46536, IL8RB, IL8RA, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MGC50811, SLC11A1, CTDSP1, VIL1, USP37 q353 58788665 60045882 RP11-19B12 RP11-769M23 13 1.257217 0.363423374 FLJ42117, FHIT p14.23 83811218 89960025 RP11-470H8 RP11-84M14 42 6.148807 1.147059587 IGSF4D, VGLL3, CHMP2B, POU1F1, HTR1F, CGGBP1, ZNF654, C3orf38, EPHA3 V_0695_LC3383_Sharp et al. (2005), V_4344_LC3397_Wong et al. (2007), V_4345_LC3405_Wong et al. (2007) p12.1-p11.13 95053092 96230679 RP11-519D23 RP11-182F6 13 1.177587 0.465504835 PROS1, ARL13B, STX19, DHFRL1, NSUN3 q11.2

3 97543024 123406602 RP11-8N23 RP11-742P12 295 25.863578 0.835793047

EPHA6, ARL6, DKFZp667G211, MINA, OR5AC2, OR5H1, OR5H14, OR5H15, OR5H6, OR5H2, OR5K4, OR5K3, OR5K1, OR5K2, CLDND1, GPR15, CPOX, ST3GAL6, DCBLD2, COL8A1, FLJ44076, C3orf26, DOC1, TBC1D23, NIT2, TOMM70A, TMEM45A, GPR128, TFG, ABI3BP, IMPG2, SENP7, RG9MTD1, PCNP, ZBTB11, RPL24, LRRIQ2, FAM55C, NFKBIZ, ZPLD1, ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, KIAA1524, DZIP3, RETNLB, TRAT1, GUCA1C, MORC1, DPPA2, DPPA4, PVRL3, CD96, ZBED2, PLCXD2, PHLDB2, ABHD10, TAGLN3, TMPRSS7, C3orf52, GCET2, SLC9A10, CD200, BTLA, ATG3, SLC35A5, URB, CD200R2, CD200R1, GTPBP8, C3orf17, BOC, WDR52, CCDC52, SIDT1, KIAA2018, MAK3, ATP6V1A, GRAMD1C, ZDHHC23, KIAA1407, QTRTD1, DRD3, ZNF80, VSIG9, ZBTB20, GAP43, LSAMP, IGSF11, C3orf30, UPK1B, B4GALT4, CDGAP,

TMEM39A, C3orf9, C3orf1, CD80, ADPRH, PLA1A, POPDC2, COX17, C3orf15, NR1I2, GSK3B, GPR156, FSTL1, NDUFB4, HGD, RABL3, GTF2E1, POLQ, ARGFX, FBXO40, HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASRV_0035_LC3553_Iafrate et al. (2004), V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007), V_4350_LC3509_Wong et al. (2007),

V_4351_LC3524_Wong et al. (2007) q11.2-q21.13 145099780 150648699 RP11-451I2 CTD-2192F6 67 5.548919 1.098765394 C3orf58, PLOD2, PLSCR4, PLSCR2, PLSCR1, ZIC4, ZIC1, AGTR1, CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1 V_4355_LC3723_Wong et al. (2007) q24-q25.1

3 151142896 179907301 RP11-687O5 RP11-385J1 264 28.764405 1.091184159

RNF13, PFN2, TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ, SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L, B3GALT3, NMD3, C3orf57, LOC131149, SI, SLITRK3, BCHE, FLJ23049, SERPINI2, WDR49, PDCD10, SERPINI1, GOLPH4, EVI1, MDS1, ARPM1,

MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B, GHSR, TNFSF10, AADACL1, ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1, KCNMB2

V_0037_LC3745_Iafrate et al. (2004), V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_0040_LC3895_Iafrate et al. (2004), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007), V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et al. (2007), V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007), V_4363_LC3872_Wong et al. (2007) q25.1-q26.32

3 180682042 183933140 RP11-15L13 RP11-797B9 27 3.251098 0.459001405 ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, TTC14, FXR1, DNAJC19, SOX2 q26.333 188185938 188693624 RP11-529D12 RP11-104O10 3 0.507686 0.423301346 ST6GAL1, RPL39L, RTP1, MASP1, RTP4 q27.33 189297943 191495489 RP11-76L15 RP11-35A15 22 2.197546 0.480584511 LPP, FAM79B, TP73L, LEPREL1 q27.3-q283 191692496 195865329 RP11-69N3 RP11-798D9 36 4.172833 0.573955728 IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12, C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1, HES1, CPN2, LRRC15, GP5, TMEM44, LSG1 V_2062_LC4004_Locke et al. (2006) q28-q293 198196971 198765727 RP11-803A10 RP13-616I3 7 0.568756 0.49524759 MFI2, DLG1, BDH1 V_0043_LC4057_Iafrate et al. (2004) q295 148993677 149476896 RP11-3G18 RP11-21I20 4 0.483219 0.55766811 FLJ41603, PPARGC1B, PDE6A, SLC26A2, TIGD6, CSF1R, PDGFRB q33.1

6 64779 8653256 RP13-486F12 RP11-607K24 82 8.588477 0.725053038FLJ43763, DUSP22, IRF4, EXOC2, HUS1B, FOXQ1, FOXF2, FOXC1, GMDS, C6orf195, LOC340156, WRNIP1, SERPINB1, SERPINB9, SERPINB6, DKFZp686I152, NQO2, LOC401233, RIPK1, BPHL, TUBB2A, TUBB2B, C6orf85, C6orf145, FAM50B, PRPF4B, C6orf146, C6orf201, PECI, CDYL, RPP40,

C6orf149, FARS2, NRN1, F13A1, LY86, RREB1, SSR1, CAGE1, RIOK1, DSP, C6orf151, BMP6, TXNDC5, MUTED, EEF1E1, SLC35B3V_0070_LC7931_Iafrate et al. (2004), V_0071_LC7931_Iafrate et al. (2004), V_0072_LC7984_Iafrate et al. (2004), V_4483_LC7931_Wong et al. (2007),

V_4484_LC7948_Wong et al. (2007), V_4485_LC7995_Wong et al. (2007), V_0374_LC7931_Bejjani et al. (2005) p25.3-p24.36 11164609 13873478 RP11-692B12 RP11-625B11 37 2.708869 0.478198944 HERV-FRD, NEDD9, C6orf105, HIVEP1, EDN1, PHACTR1, TBC1D7, GFOD1, C6orf114, SIRT5, NOL7, RANBP9 p24.2-p236 17007348 21420334 RP11-401D8 RP11-21G24 46 4.412986 0.400471372 RBM24, CAP2, FAM8A1, NUP153, KIF13A, NHLRC1, TPMT, AOF1, DEK, IBRDC2, ID4, MBOAT1, E2F3, CDKAL1 V_4486_LC8077_Wong et al. (2007), V_5038_LC8092_Wong et al. (2007) p22.3

6 22081828 28647274 RP11-541P16 RP11-150B16 71 6.565446 0.481790881

PRL, HDGFL1, NRSN1, DCDC2, KAAG1, MRS2L, GPLD1, ALDH5A1, KIAA0319, TTRAP, THEM2, C6orf62, GMNN, C6orf32, LRRC16, SCGN, HIST1H2AA, HIST1H2BA, SLC17A4, SLC17A1, SLC17A3, SLC17A2, TRIM38, HIST1H1A, HIST1H3A, HIST1H4A, HIST1H4B, HIST1H3B, HIST1H2AB, HIST1H2BB, HIST1H3C, HIST1H1C, HFE, HIST1H4C, HIST1H1T, HIST1H2BC, HIST1H2AC, HIST1H1E, HIST1H2BD, HIST1H2BE, HIST1H4D, HIST1H3D, HIST1H2AD, HIST1H2BF, HIST1H4E, HIST1H2BG, HIST1H2AE, HIST1H3E, HIST1H1D, HIST1H4F, HIST1H4G, HIST1H3F, HIST1H2BH,

HIST1H3G, HIST1H2BI, HIST1H4H, BTN3A2, BTN2A2, BTN3A1, BTN2A3, BTN3A3, BTN2A1, BTN1A1, HMGN4, ABT1, ZNF322A, HIST1H2BJ, HIST1H2AG, HIST1H2BK, HIST1H4I, HIST1H2AH, PRSS16, LOC346157, ZNF184, HIST1H2BL, HIST1H2AI, HIST1H3H, HIST1H2AJ, HIST1H2BM, HIST1H4J, HIST1H4K, HIST1H2AK, HIST1H2BN, HIST1H2AL, HIST1H1B, HIST1H3I, HIST1H4L, HIST1H3J, HIST1H2AM, HIST1H2BO, OR2B2, OR2B6, ZNF165, ZNF435, ZNF192, ZNF193, ZNF307, C6orf194, ZNF187, PGBD1, ZNF323, ZNF306, ZNF96, GPX6, GPX5

V_0715_LC8143_Sharp et al. (2005), V_0716_LC8143_Sharp et al. (2005), V_0717_LC8143_Sharp et al. (2005), V_2095_LC8143_Locke et al. (2006), V_2096_LC8143_Locke et al. (2006), V_2097_LC8143_Locke et al. (2006), V_4487_LC8122_Wong et al. (2007), V_4488_LC8136_Wong et al. (2007),

V_4489_LC8143_Wong et al. (2007), V_4490_LC8143_Wong et al. (2007), V_4491_LC8158_Wong et al. (2007) p22.3-p22.16 32491645 33221750 RP11-379F19 RP11-80O4 18 0.730105 0.511641304 HLA-DRA, HLA-DRB5, HLA-DRB1, HLA-DQA1, HLA-DQA2, HLA-DOB, TAP2, PSMB8, TAP1, PSMB9, HLA-DMB, HLA-DMA, BRD2, HLA-DOA, HLA-DPA1, HLA-DPB1 V_0076_LC8230_Iafrate et al. (2004), V_4493_LC8208_Wong et al. (2007), V_4767_LC8208_Wong et al. (2007) p21.326 34239429 34822655 CTD-2242D5 RP11-140K17 4 0.583226 0.582147865 HMGA1, C6orf1, NUDT3, RPS10, PACSIN1, SPDEF, C6orf106 p21.317 83327218 85277429 RP11-398N16 CTD-2083K15 26 1.950211 0.677478045 SEMA3A, SEMA3D q21.11

8 29004 5654065 RP11-130K11 RP11-367L9 62 5.625061 0.382106229 OR4F21, ZNF596, FBXO25, C8orf42, LOC389607, ERICH1, DLGAP2, CLN8, C8orf61, ARHGEF10, KBTBD11, MYOM2, CSMD1V_0731_LC10225_Sharp et al. (2005), V_0732_LC10225_Sharp et al. (2005), V_2112_LC10225_Locke et al. (2006), V_2113_LC10225_Locke et al. (2006),

V_4276_LC10225_Wong et al. (2007), V_4575_LC10225_Wong et al. (2007), V_4576_LC10225_Wong et al. (2007) p23.3-p23.28 13780000 19210026 RP11-367O17 RP11-809N7 44 5.430026 0.47530996 SGCZ, TUSC3, MSR1, FGF20, EFHA2, ZDHHC2, CNOT7, VPS37A, MTMR7, SLC7A2, PDGFRL, MTUS1, FGL1, PCM1, ASAH1, NAT1, NAT2, PSD3 V_0116_LC10436_Iafrate et al. (2004), V_2122_LC10408_Locke et al. (2006), V_4585_LC10449_Wong et al. (2007) p22-p21.38 57547319 60743597 RP11-17A4 RP11-51L11 30 3.196278 0.763788927 IMPAD1, C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX V_4594_LC10611_Wong et al. (2007), V_4595_LC10619_Wong et al. (2007) q12.18 68439786 70378915 RP11-252K16 RP11-21C17 20 1.939129 0.71334986 CPA6, DEPDC2, C8orf34 q13.2

8 72709911 94331876 RP11-710I5 RP11-772P22 183 21.621965 0.963805083MSC, TRPA1, KCNB2, TERF1, RPESP, RPL7, RDH10, STAU2, UBE2W, TCEB1, TMEM70, LY96, JPH1, GDAP1, PI15, CRISPLD1, HNF4G, ZFHX4, PXMP3, PKIA, C8orf70, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10, ZNF704, PAG1, FABP5, PMP2, PERF15, FABP4, IMPA1, SLC10A5, ZFAND1,

CHMP4C, SNX16, LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1, WDR21C, MMP16, RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64, EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1

V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007),


8 105416692 120454829 RP11-437B2 RP11-318N11 125 15.038137 1.013687871 TM7SF4, DPYS, LRP12, ZFPM2, OXR1, ABRA, ANGPT1, RSPO2, EIF3S6, TTC35, TMEM74, TRHR, NUDCD1, ENY2, PKHD1L1, EBAG9, FLJ20366, KCNV1, CSMD3, TRPS1, EIF3S3, C8orf53, RAD21, LOC441376, SLC30A8, THRAP6, EXT1, SAMD12, TNFRSF11B, COLEC10, MAL2 V_4608_LC10811_Wong et al. (2007) q22.3-q24.128 124702971 127954207 RP11-562D1 RP11-633P13 24 3.251236 0.599526911 C8ORFK36, ANXA13, FAM91A1, C8ORFK23, C8orf54, TMEM65, TRMT12, RNF139, TATDN1, NDUFB9, MTSS1, ZNF572, SQLE, KIAA0196, C8orf36, TRIB1, FAM84B q24.13-q24.218 130747846 131208098 RP11-274M4 RP11-155H18 5 0.460252 0.416125664 MLZE, FAM49B, DDEF1 q24.21

8 131324955 143994028 RP11-230K1 RP11-304E16 115 12.669073 0.744328531DDEF1, ADCY8, KIAA0143, OC90, KCNQ3, LRRC6, TMEM71, PHF20L1, TG, SLA, WISP1, NDRG1, ST3GAL1, ZNF406, KHDRBS3, C8ORFK32, COL22A1, KCNK9, NIBP, CHRAC1, EIF2C2, PTK2, DENND3, SLC45A4, GPR20, PTP4A3, FLJ43860, TSNARE1, BAI1, ARC, JRK, PSCA, LY6K, C8orf55,

SLURP1, LYPD2, LYNX1, LY6D, GML, CYP11B1, CYP11B2V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_4610_LC10912_Wong et al. (2007), V_4611_LC10941_Wong et al. (2007),

V_4791_LC10979_Wong et al. (2007) q24.21-q24.39 29038 4374969 RP11-143M1 RP11-403B1 37 4.345931 0.885669008 FOXD4, CBWD1, C9orf66, DOCK8, ANKRD15, DMRT1, DMRT3, DMRT2, SMARCA2, VLDLR, KCNV2, KIAA0020, RFX3, GLIS3 V_0125_LC11024_Iafrate et al. (2004), V_0126_LC11024_Iafrate et al. (2004) p24.3-p24.29 6837952 15513615 RP11-190M2 RP11-795K4 81 8.675663 0.493881064 JMJD2C, C9orf123, PTPRD, TYRP1, C9orf150, MPDZ, NFIB, ZDHHC21, CER1, FREM1, C9orf52, SNAPC3, PSIP1 V_0127_LC11147_Iafrate et al. (2004), V_4615_LC11143_Wong et al. (2007) p24.1-p22.3

9 15964174 30915030 RP11-97O17 RP11-98O11 147 14.950856 0.597790405BNC2, LOC648570, C9orf39, SH3GL2, ADAMTSL1, C9orf94, C9orf138, RRAGA, FAM29A, ADFP, DENND4C, RPS6, ASAH3L, SLC24A2, MLLT3, KIAA1797, PTPLAD2, IFNB1, IFNW1, IFNA21, IFNA4, IFNA14, IFNA7, IFNA10, IFNA16, IFNA17, IFNA5, KLHL9, IFNA6, IFNA13, IFNA2, IFNA8, IFNA1,

IFNE1, MTAP, CDKN2A, CDKN2B, DMRTA1, ELAVL2, TUSC1, C9orf82, PLAA, IFT74, LRRC19, TEK, C9orf11, MOBKL2B, IFNK, C9orf72, LRRN6C V_0128_LC11164_Iafrate et al. (2004), V_4616_LC11224_Wong et al. (2007), V_4617_LC11257_Wong et al. (2007) p22.3-p21.1

9 34745917 89448313 RP11-597L11 RP11-192D21 262 54.702396 1.12529805

DNAJB5, MGC41945, VCP, FANCG, PIGO, STOML2, KIAA1539, UNC13B, FLJ46309, LOC158381, RUSC2, TESK1, CD72, SIT1, MGC31967, C9orf100, CA9, TPM2, TLN1, CREB3, GBA2, KIAA0258, PC-3, NPR2, SPAG8, HINT2, C9orf128, C9orf127, OR13J1, LOC646962, OR2S2, RECK, C9orf19, CCIN, CLTA, GNE, RNF38, MELK, PAX5, ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10, FRMPD1, RG9MTD3, EXOSC3, WDR32, MCART1, SHB, ALDH1B1, IGFBPL1, CNTNAP3, LOC642265, LOC727830, ZNF658, ZNF658B, ANKRD20A2, LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5, C9orf71, PIP5K1B, C9orf42, PRKACG, FXN, TJP2, C9orf61, APBA1, LOC138255, MAMDC2, SMC5, KLF9, TRPM3, TMEM2, C9orf77, C9orf85, GDA, ZA20D2, TMC1, ALDH1A1, ANXA1, RORB, TRPM6, C9orf40, C9orf41, C9orf95, OSTF1,

PCSK5, RFK, GCNT1, KIAA0367, C9orf65, LOC442425, VPS13A, GNA14, GNAQ, PSAT1, TLE4, TLE1, FLJ46321, RASEF, FRMD3, C9orf103, UBQLN1, GKAP1, KIF27, C9orf64, HNRPK, C9orf76, SLC28A3, NTRK2, AGTPBP1, MAK10, GOLPH2, C9orf153, HBLD2, ZCCHC6, GAS1, FLJ45537, DAPK1

V_0129_LC11470_Iafrate et al. (2004), V_0742_LC11330_Sharp et al. (2005), V_0743_LC11344_Sharp et al. (2005), V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_2127_LC11326_Locke et al. (2006), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. (2006), V_2131_LC11330_Locke et al. (2006), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2140_LC11330_Locke et al. (2006),

V_2141_LC11344_Locke et al. (2006), V_2142_LC11330_Locke et al. (2006), V_21 p13.3-q21.339 90481773 92255717 RP11-204A14 RP11-269P20 20 1.773944 0.335671106 C9orf47, EDG3, SHC3, CKS2, SECISBP2, LOC349236, SEMA4D, GADD45G V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005) q22.1-q22.2

9 101917303 125830161 RP11-467B11 RP11-140H11 235 23.912858 0.892523385

INVS, TEX10, C9orf30, TMEFF1, LOC347273, PRG-3, BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FCMD, TAL2, TMEM38B, ZNF462, RAD23B, KLF4, ACTL7B, ACTL7A, IKBKAP, C9orf6, CTNNAL1, C9orf5, C9orf4, EPB41L4B, PTPN3, PALM2, PALM2-AKAP2, AKAP2, C9orf152, TXN, TXNDC8, SVEP1, MUSK, EDG2, OR2K2, KIAA0368, ZNF483, LTB4DH, bA16L21.2.1, LOC552891, GNG10, C9orf84, UGCG, SUSD1, ROD1,HSDL2, KIAA1958, C9orf80, TSCOT, ZFP37, SLC31A2, SLC31A1, CDC26, PRPF4, RNF183, WDR31, BSPRY, HDHD3, ALAD, POLE3, C9orf43, RGS3, ZNF618, AMBP, KIF12, COL27A1, ORM1, ORM2, AKNA, DFNB31, ATP6V1G1, C9orf91, TNFSF15, TNFSF8, TNC, PAPPA, ASTN2, TRIM32, TLR4, DBC1, CDK5RAP2, MEGF9, FBXW2, PSMD5, PHF19, TRAF1, C5, CEP110, RAB14, GSN, STOM, DAB2IP, TTLL11, NDUFA8, C9orf18, LHX6, RBM18, MRRF, PTGS1, OR1J1, OR1J2, OR1J4, OR1N1, OR1N2, OR1L8, OR1Q1, OR1B1, OR1L1, OR1L3, OR1L4, OR1L6, OR5C1, OR1K1, PDCL, MNAB,

ZBTB6, ZBTB26, RABGAP1, GPR21, STRBP, CRB2, DENND1A, LHX2V_0131_LC11661_Iafrate et al. (2004), V_4650_LC11572_Wong et al. (2007), V_4651_LC11606_Wong et al. (2007), V_4652_LC11661_Wong et al. (2007),

V_4653_LC11698_Wong et al. (2007) q31.1-q33.39 127160267 129138449 RP11-661B9 RP11-430F11 17 1.978182 0.452041943 GAPVD1, MAPKAP1, PBX3, C9orf28, LMX1B, ZNF297B, RALGPS1, ANGPTL2, GARNL3 V_4654_LC11759_Wong et al. (2007), V_4655_LC11759_Wong et al. (2007), V_4656_LC11759_Wong et al. (2007) q33.3

12 16595 7524619 RP13-492B24 RP11-326A16 76 7.508024 0.925754261

IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2, DCP1B, CACNA1C, FKBP4, ITFG2, NRIP2, FOXM1, C12orf32, TULP3, TEAD4, TSPAN9, PRMT8, MGC4266, PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B, VWF, CD9, PLEKHG6, TNFRSF1A, SCNN1A, LTBR, CD27, TAPBPL, VAMP1, MRPL51, CNAP1, GAPDH, HOM-TES-103, NOL1, CHD4, GPR92, ACRBP, ING4, ZNF384, C12orf53, COPS7A,

MLF2, PTMS, LAG3, CD4, GPR162, LEPREL2, GNB3, CDCA3, USP5, TPI1, SPSB2, LRRC23, ENO2, ATN1, C12orf57, PTPN6, PHB2, EMG1, OACT5, C1S, C1R, C1RL, RBP5, CLSTN3, PEX5, LOC341392, CD163L1, CD163 V_0161_LC13778_Iafrate et al. (2004), V_4765_LC13757_Wong et al. (2007), V_4766_LC13773_Wong et al. (2007) p13.33-p13.31

12 8486385 15266098 RP11-561P12 RP11-169O7 57 6.779713 0.648155491

CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, FAM80B, A2ML1, PHC1, M6PR, KLRG1, C12orf33, A2M, PZP, KLRB1, CLEC2D, DCAL1, CD69, KLRF1, CLEC2B, CLEC12A, CLEC1B, CLEC12B, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRK1, KLRC4, KLRC3, KLRC2, KLRC1, KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4, PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19,

CDKN1B, APOLD1, DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP, FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4, MGP, C12orf46, ARHGDIB, PDE6H, RERG V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007) p13.31-p12.312 25282796 26032352 RP11-707G18 RP11-16A24 6 0.749556 0.578042043 KRAS, FLJ36004, RASSF8 p12.112 26326612 27822752 RP11-281N18 RP11-4O2 15 1.49614 0.533511874 ITPR2, C12orf11, FGFR1OP2, TM7SF3, SURB7, LOC728858, STK38L, ARNTL2, PPFIBP1, REP15, MRPS35 p11.23-p11.22

12 29280819 47234868 RP11-415C12 RP11-156P16 181 17.954049 0.628672813

MLSTD1, ERGIC2, OVCH1, TMTC1, IPO8, C1QDC1, TSPAN11, DDX11, OVOS2, FAM60A, MGC24039, MGC50559, LOC196394, LOC440093, C12orf35, BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4, AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856,

OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1 V_2170_LC13972_Locke et al. (2006), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007) p11.22-q13.11

12 50055267 51476774 RP11-607P23 RP11-563M1 16 1.421507 0.48586237 GALNT6, SLC4A8, SCN8A, LOC401720, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRTHB1, KRTHB6, KRTHB3, KRT85, KRTHB4, KRTHB2, K6HF, KRT6B, KRT6C, KRT6A, KRT5, KRT6IRS, K6IRS4, K6IRS2, K6IRS3, KRT2A, KRT1, KRT1B, KRT76, KRT3 V_4778_LC14057_Wong et al. (2007) q13.1312 53692814 54287319 RP11-318K1 RP11-222A15 5 0.594505 0.439072 NEUROD4, OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4 V_4780_LC14080_Wong et al. (2007) q13.2

12 56509410 107369930 RP11-620J15 RP11-558G19 520 50.86052 1.011322948

SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, PSRC2, THAP2, TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1, NUDT4, UBE2N, MRPL42, SOCS2, CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT, METAP2, USP44, NTN4, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, PCTK2, C12orf63, NEDD1, TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, TMEM16D, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM, CCDC53, NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1,

C12orf42, STAB2, NT5DC3, HSP90B1, TDG, GLT8D2, HCFC2, NFYB, TXNRD1, EID3, CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NU


V_4786_LC14380_Wong et al. (2007) q14.1-q23.312 112700663 113535769 RP11-297D4 RP11-385N17 8 0.835106 0.455248299 RBM19, TBX5 q24.13-q24.2112 113759204 115377242 RP11-324M3 RP11-484E21 17 1.618038 0.447332168 THRAP2 V_4787_LC14460_Wong et al. (2007) q24.21-q24.2212 116014617 118883261 RP11-183N5 RP11-147D16 38 2.868644 0.460068761 TESC, FBXO21, NOS1, KSR2, RFC5, WSB2, FLJ20674, PEBP1, TAOK3, SUDS3, KIAA1853, HSPB8, CCDC60, PRKAB1, CIT V_4789_LC14468_Wong et al. (2007) q24.22-q24.23

12 122235689 132289529 RP11-135O20 CTD-2140B24 92 10.05384 0.544439999MPHOSPH9, C12orf65, CDK2AP1, SBNO1, SETD8, MGC7036, U1SNRNPBP, FLJ39378, TMED2, DDX55, EIF2B1, GTF2H3, C12orf38, ATP6V0A2, DNAH10, CCDC92, ZNF664, FAM101A, NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS, TMEM132B, SLC15A4, GLT1D1, TMEM132D, FZD10, PIWIL1,

RIMBP2, EPIM, RAN, GPR133, SFRS8, MMP17, ULK1, PUS1, EP400, DDX51, NOC4L, GALNT9, P2RX2, POLE, PXMP2, PGAM5, GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10, ZNF268V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. (2006), V_4404_LC14595_Wong et al. (2007), V_4792_LC14514_Wong et al. (2007), V_4793_LC14538_Wong et al. (2007), V_4794_LC14556_Wong et al. (2007), V_4795_LC14556_Wong et al. (2007), V_4796_LC14595_Wong et al. (2007) q24.31-q24.33

14 18071243 72090238 RP11-404K10 RP11-437J15 444 54.018995 0.893101205

OR11H12, POTE14, LOC440157, OR4Q3, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1, OR4K15, OR4K14, OR4K13, OR4L1, OR4K17, OR4N5, OR11G2, OR11H6, OR11H4, TTC5, CCNB1IP1, PARP2, TEP1, OSGEP, APEX1, TMEM55B, NP, RNASE10, RNASE9, RNASE11, RNASE12, OR6S1, ANG, RNASE4, FAM12A, FAM12B, RNASE6, RNASE1, RNASE3, RNASE2, FLJ20859, SLC39A2, NDRG2, C14orf8, RNASE13, RNASE7, RNASE8, FLJ10357, ZNF219, OR5AU1, HNRPC, RPGRIP1, SUPT16H, CHD8, RAB2B, C14orf92, METTL3, SALL2, OR10G3, OR10G2, OR4E2, DAD1, ABHD4, OXA1L,

SLC7A7, MRPL52, MMP14, LRP10, REM2, RBM23, PRMT5, C14orf94, JUB, C14orf93, PSMB5, CDH24, ACIN1, C14orf119, CEBPE, SLC7A8, KIAA1443, BCL2L2, PABPN1, SLC22A17, EFS, IL17E, CMTM5, MYH6, MYH7, C14orf120, THTPA, AP1G2, JPH4, DHRS2, C14orf165, DHRS4, DHRS4L2, LOC728635, C14orf121, CPNE6, NRL, PCK2, WDR23, LOC161247, PSME1, C14orf122, PSME2, RNF31, ISGF3G, REC8L1, IPO4, TM9SF1, TSSK4, CHMP4A, MDP-1, NEDD8, GMPR2, TINF2, TGM1, RABGGTA, DHRS1, C14orf21, CIDEB, LTB4R2, LTB4R, ADCY4, RIPK3, NFATC4, KIAA1305, CBLN3,

KIAA0323, C14orf124, CMA1, CTSG, GZMH, GZMB, STXBP6, NOVA1, FOXG1B, PRKD1, KIAA1333, SCFD1, COCH, STRN3, AP4S1, HECTD1, C14orf126, NUBPL, ARHGAP5, AKAP6, NPAS3, EGLN3, C14orf147, C14orf11, SNX6, CFL2, BAZ1A, SRP54, C14orf24, C14orf10, KIAA0391, PSMA6, NFKBIA, INSM2, GARNL1, BRMS1L, MBIP, TITF1, NKX2-8, PAX9, SLC25A21, MIPOL1, FOXA1, TTC6, SSTR1, CLEC14A, SEC23A, SIP1, TRAPPC6B,

V_0174_LC15357_Iafrate et al. (2004), V_0175_LC15404_Iafrate et al. (2004), V_0176_LC15452_Iafrate et al. (2004), V_0812_LC15340_Sharp et al. (2005), V_2174_LC15340_Locke et al. (2006), V_2175_LC15340_Locke et al. (2006), V_2256_LC15340_Locke et al. (2006), V_4822_LC15340_Wong et al. (2007), V_4823_LC15340_Wong et al. (2007), V_4824_LC15340_Wong et al. (2007), V_4825_LC15340_Wong et al. (2007), V_4826_LC15340_Wong et al. (2007), V_4827_LC15340_Wong et al. (2007), V_4828_LC15358_Wong et al. (2007), V_4829_LC15358_Wong et al. (2007), V_4830_LC15358_Wong et al. (2007), V_4831_LC15358_Wong et al. (2007), V_4832_LC15402_Wong et al. (2007), V_4833_LC15499_Wong et al. (2007), V_4834_LC15537_Wong et al. (2007), V_4835_LC15559_Wong et al. (2007), V_4836_LC15600_Wong et al. (2007), V_4837_LC15650_Wong et al. (2007), V_4838_LC15719_Wong et al. (2007),

V_0376_LC15340_Bejjani et al. (2005) q11.1-q24.214 74883816 76813365 RP11-550C19 RP11-379H3 16 1.929549 0.731399739 JDP2, BATF, C14orf58, C14orf1, TTLL5, TGFB3, MGC16028, C14orf118, ESRRB, VASH1, ANGEL1, C14orf166B, C14orf4, KIAA1737, ZDHHC22, TMEM63C, NGB, POMT2 V_4840_LC15786_Wong et al. (2007) q24.314 77641968 88494064 RP11-305H24 RP11-99F24 89 10.852096 0.588224754 NRXN3, DIO2, C14orf145, TSHR, GTF2A1, STON2, SEL1L, FLRT2, GALC, GPR65, KCNK10, SPATA7, PTPN21, FLJ11806, EML5, TTC8 V_0178_LC15831_Iafrate et al. (2004), V_4841_LC15841_Wong et al. (2007), V_4842_LC15858_Wong et al. (2007) q24.3-q31.314 93529735 94074240 RP11-145P14 RP11-749G2 5 0.544505 0.385156142 C14orf48, OTUB2, DDX24, FAM14B, IFI27, FAM14A, KIAA1622, SERPINA10, SERPINA6, SERPINA1, SERPINA11, SERPINA9, SERPINA12 q32.1314 94451329 99691376 RP13-603A18 RP13-556C12 42 5.240047 0.541514822 DICER1, CLMN, C14orf49, GLRX5, TCL6, TCL1B, TCL1A, BDKRB2, BDKRB1, C14orf103, C14orf129, AK7, PAPOLA, VRK1, FLJ25773, BCL11B, SETD3, CCNK, KIAA1822, CYP46A1, EML1, EVL, DEGS2 V_4846_LC15993_Wong et al. (2007) q32.13-q32.2

14 104701664 106318374 RP11-1087P8 CTD-2313E3 18 1.61671 0.449455026 JAG2, NUDT14, BRF1, BTBD6, PACS2, MTA1, CRIP2, CRIP1, C14orf80, TMEM121


V_4859_LC16055_Wong et al. (2007), V_4860_LC16055_Wong et al. (2007), V_0377_LC16055_Bejjani et al. (2005) q32.3317 32864722 33387765 RP11-50A9 CTD-2344A6 5 0.523043 1.042607643 TADA2L, DUSP14, AP1GBP1, DDX52, TCF2 V_5002_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007) q1217 36315177 36762766 RP11-625J8 RP13-649M11 4 0.447589 0.850320037 KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A V_0205_LC17492_Iafrate et al. (2004) q21.217 40555338 41326291 RP11-666C2 RP11-656O14 12 0.770953 0.645980476 PLCD3, ACBD4, HEXIM1, HEXIM2, FMNL1, C17orf46, MAP3K14, ARHGAP27, LOC201175, PLEKHM1, C17orf69, CRHR1, IMP5 V_5010_LC17522_Wong et al. (2007) q21.31

17 41834276 43788748 RP11-57A24 RP13-495A21 18 1.954472 1.12781257 LOC474170, ARL17, NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1, SNX11, SKAP1V_0207_LC17522_Iafrate et al. (2004), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_2228_LC17522_Locke et al. (2006),

V_2229_LC17530_Locke et al. (2006), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007) q21.31-q21.32

17 46892558 54069934 RP11-368A16 RP11-795C13 74 7.177376 2.00166997 CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14 V_0209_LC17565_Iafrate et al. (2004), V_4410_LC17595_Wong et al. (2007), V_5019_LC17572_Wong et al. (2007) q21.33-q2217 54923237 55709933 RP11-301K2 RP11-767P9 10 0.786696 0.98027994 DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1, CA4, USP32 V_0805_LC17601_Sharp et al. (2005) q23.1-q23.217 56319919 57374119 RP11-124P2 CTD-2245N4 12 1.0542 0.965386429 BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2 q23.217 58308724 58892053 RP11-579J2 RP11-441O7 5 0.583329 0.99951659 CYB561 V_5021_LC17617_Wong et al. (2007) q23.2-q23.3

17 60135129 60371453 RP11-443O21 CTD-2310D18 7 0.236324 0.685878496 FLJ34306 V_2231_LC17631_Locke et al. (2006), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007), V_5024_LC17631_Wong et al. (2007) q24.117 64191239 64790608 RP11-618E4 RP11-615I10 7 0.599369 0.566128181 ABCA8, ABCA9, ABCA6, ABCA10, ABCA5 q24.2-q24.317 64891799 67905909 RP11-582J10 RP11-95C11 26 3.01411 0.638244654 MAP2K6, KCNJ16, KCNJ2, SOX9 V_0211_LC17666_Iafrate et al. (2004), V_5028_LC17688_Wong et al. (2007) q24.320 7401688 10223651 RP11-742H14 RP11-120D2 29 2.821963 0.579983017 HAO1, TXNDC13, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25 V_5124_LC19312_Wong et al. (2007) p12.3-p12.220 12097826 14184948 RP11-174D12 RP11-158K16 19 2.087122 0.482267218 SPTLC2L, TASP1, C20orf6, C20orf7 V_5125_LC19365_Wong et al. (2007) p12.1

20 15973459 25235374 RP11-654N22 RP11-156D15 71 9.261915 0.461243597C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179, SNX5, C20orf72, OVOL2, CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, C20orf26, INSM1, C20orf74, C20orf19, XRN2, NKX2-2, PAX1,

FOXA2, SSTR4, THBD, CD93, NXT1, ZNF336, NAPB, CSTL1, CST11, CST8, CST9L, CST9, CST3, CST4, CST1, CST2, CST5, GGTLA4, C20orf39, CST7, C20orf3, ACSS1, VSX1, ENTPD6, PYGB, ABHD12 V_0224_LC19418_Iafrate et al. (2004), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et al. (2007), V_5129_LC19510_Wong et al. (2007) p12.1-p11.2120 35978952 39172885 RP11-523K15 CTD-2007O4 27 3.193933 0.638436365 C20orf102, KIAA0406, C20orf77, TGM2, KIAA1755, BPI, LBP, KIAA1219, SMAF1, SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, MAFB, TOP1 V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007) q11.23-q1220 39677527 41263012 RP11-138M11 RP11-375L22 13 1.585485 0.565364858 CHD6, PTPRT q12-q13.1120 42735088 43769989 CTD-2028B20 CTD-2013L23 9 1.034901 0.676178848 WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35, C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13 q13.1220 44086132 48071197 RP11-373A15 RP11-223M11 27 3.985065 0.8041508 SLC12A5, NCOA5, CD40, CDH22, SLC35C2, ELMO2, ZNF334, SLC13A3, TP53RK, SLC2A10, EYA2, PRKCBP1, NCOA3, SULF2, PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, ZNF313, SNAI1 V_2251_LC19741_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007) q13.12-q13.1320 49641774 50137940 RP11-94M5 RP11-260O1 4 0.496166 0.440223732 ATP9A, SALL4 q13.2

20 52483586 62434349 RP11-6L15 RP11-350G15 85 9.950763 1.733267622

DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C, BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45,C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D, C20orf177, CDH26, FLJ33860, LOC284757, CDH4, TAF4, LSM14B, PSMA7, SS18L1, GTPBP5, HRH3, OSBPL2, ADRM1, LAMA5, RPS21, CABLES2, C20orf151, GATA5, FLJ30313, C20orf166, SLCO4A1, NTSR1, C20orf20, OGFR, COL9A3, TCFL5,

DIDO1, C20orf11, C20orf59, BHLHB4, YTHDF1, BIRC7, C20orf58, ARFGAP1, COL20A1, CHRNA4, KCNQ2, EEF1A2, C20orf149, PTK6, SRMS, C20orf195, PRIC285, GMEB2, STMN3, RTEL1, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, BTBD4, C20orf135, TPD52L2, DNAJC5, UCKL1, GM632,SAMD10, PRPF6, LOC284739, SOX18, TCEA2, RGS19, OPRL1, LOC198437, NPBWR2, MYT1, PCMTD2

V_2252_LC19985_Locke et al. (2006), V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al. (2007), V_5149_LC19985_Wong et al. (2007), V_5150_LC19985_Wong et al. (2007) q13.2-q13.33

21 14574560 30677617 RP11-675D22 RP11-777I18 143 16.103057 0.794162131STCH, SAMSN1, NRIP1, USP25, C21orf34, CXADR, BTG3, C21orf91, CHODL, PRSS7, NCAM2, MRPL39, JAM2, ATP5J, GABPA, APP, CYYR1, ADAMTS1, ADAMTS5, HEMK2, ZNF294, C21orf6, USP16, CCT8, C21orf7, BACH1, GRIK1, CLDN17, CLDN8, KRTAP26-1, KRTAP27-1, KRTAP23-1,

KRTAP13-2V_0231_LC20086_Iafrate et al. (2004), V_0232_LC20109_Iafrate et al. (2004), V_5158_LC20061_Wong et al. (2007), V_5159_LC20079_Wong et al. (2007),

V_5160_LC20086_Wong et al. (2007) q11.2-q22.1121 35108743 36129760 RP11-67H7 RP11-714H12 7 1.021017 0.407452069 RUNX1 q22.1221 37864241 39654126 CTD-2507A20 RP11-115E14 19 1.789885 0.333083664 KCNJ6, DSCR4, DSCR8, DSCR10, KCNJ15, ERG, C21orf24, ETS2, FLJ45139, DSCR2, BRWD1, C21orf87, LOC728776, HMGN1 q22.13-q22.2

21 44797530 45829672 RP11-421A4 RP11-797N4 14 1.032142 0.380496094C21orf29, KRTAP10-3, KRTAP10-4, KRTAP10-5, KRTAP10-6, KRTAP10-7, KRTAP10-8, KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-3, KRTAP12-2, KRTAP12-1, KRTAP10-12, UBE2G2, SUMO3, PTTG1IP, ITGB2, C21orf69, C21orf67, C21orf70, ADARB1, PRED57, POFUT2,

COL18A1, C21orf123, SLC19A1 q22.3

22 14440103 14836998 CTD-2177M20 RP11-532J16 6 0.396895 0.691860514 ACTBL1, OR11H1V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007),

V_5165_LC20342_Wong et al. (2007), V_5166_LC20342_Wong et al. (2007) q11.123 550000 3119788 RP13-76L22 RP11-240H7 9 2.569788 0.317848983 XG, GYG2, ARSD, ARSE, ARSH, ARSF V_0821_LC20656_Sharp et al. (2005) p22.3323 16189704 16878421 CTD-2381G24 RP11-777N18 6 0.688717 0.291495635 CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2 p22.223 18043731 19502156 RP11-358F8 RP11-270L12 16 1.458425 0.434319414 CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1 p22.13-p22.1223 23439119 24280714 RP11-93C1 RP11-610N14 8 0.841595 0.346614593 PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX p22.1123 39353049 41396947 RP11-20I14 CTD-2264F9 20 2.043898 0.422747965 BCOR, ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK p11.423 44058402 44819157 RP11-750B11 RP13-604A7 6 0.760755 0.242604665 EFHC2, FUNDC1, DUSP21, UTX p11.3

23 46643781 48212489 RP11-48J14 RP11-344N17 16 1.568708 0.489338774 PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41, ARAF, SYN1, TIMP1, CFP, ELK1, UXT, ZNF81, ZNF21, ZNF630, SSX6, LOC389852, SPACA5B, SSX5, SSX1, SSX9, SSX3, SSX4B, SSX4, SLC38A5 V_0822_LC20844_Sharp et al. (2005), V_0823_LC20844_Sharp et al. (2005), V_2276_LC20844_Locke et al. (2006), V_2277_LC20844_Locke et al. (2006) p11.3-p11.2323 51359958 54095733 RP11-141O19 RP13-444K19 24 2.735775 0.90137179 GSPT2, MAGED1, MAGED4, LOC401589, XAGE2, LOC653216, XAGE1, SSX7, SSX2, SPANXN5, XAGE5, XAGE3, TMEM29, GPR173, TSPYL2, SMCX, IQSEC2, SMC1L1, RIBC1, HADH2, HUWE1, PHF8 p11.22

23 61987824 121650228 RP11-772H16 RP11-604P10 541 59.662404 0.71342072

SNX12, MLLT7, LOC158830, IL2RG, MED12, NLGN3, GJB1, ZMYM3, NONO, ITGB1BP2, TAF1, OGT, ACRC, CXCR3, RGAG4, LOC340527, FLJ44635, PIN4, LOC728758, FLJ20105, RPS4X, CITED1, HDAC8, PHKA1, LOC728656, DMRTC1, LOC645974, LOC340529, NAP1L2, CDX4, CHIC1, ZCCHC13, SLC16A2, RNF12, KIAA2022, ABCB7, UPRT, ZDHHC15, MAGEE2, CXorf26, MAGEE1, FGF16, ATRX, DKFZp564K142, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, ZCCHC5, GPR23, P2RY10, GPR174, ITM2A, TBX22, FAM46D, BRWD3, NSBP1, SH3BGRL, POU3F4, CYLC1, RPS6KA6,

CXorf43, FAM121A, SATL1, ZNF6, POF1B, CHM, DACH2, KLHL4, CPXCR1, TGIF2LX, PABPC5, PCDH11X, NAP1L3, RP1-32F7.2, DIAPH2, RPA4, PCDH19, TNMD, TSPAN6, SRPX2, SYTL4, CSTF2, NOX1, XKRX, ARL13A, CXorf34, TMEM35, FSHPRH1, DRP2, TAF7L, TIMM8A, BTK, RPL36A, GLA, HNRPH2, ARMCX1, ARMCX6, ARMCX3, ARMCX2, NXF5, ZMAT1, TCEAL2, TCEAL6, NGFRAP1L1, NXF2, TMSL8, ARMCX5, GPRASP1, GPRASP2, BHLHB9, LOC286526, BEX1, NXF3, BEXL1, TCEAL8, TCEAL5, BEX2, TCEAL7, WBP5, NGFRAP1, RAB40A, TCEAL4, TCEAL3, TCEAL1, MORF4L2,

TMEM31, PLP1, RAB9B, MGC39900, H2BFWT, MCART6, CXorf39, ESX1, IL1RAPL2, TEX13A, NRK, SERPINA7, MUM1L1, CXorf57, RNF128, FLJ20298

V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004),

V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) q11.1-q2523 122535814 123284246 RP11-524K17 RP11-799O20 5 0.748432 0.294667674 THOC2, BIRC4, STAG2 q2523 124028412 124499129 RP11-439D6 RP11-438A5 4 0.470717 0.349387092 q2523 124738790 125960329 RP11-210M24 RP13-493G18 13 1.221539 0.552635422 LOC340578, WDR40B V_0253_LC21091_Iafrate et al. (2004) q2523 128300464 129548939 RP11-373I3 RP11-360B10 13 1.248475 0.575364276 SMARCA1, OCRL, APLN, XPNPEP2, CXorf9, ZDHHC9, UTP14A, BCORL1, ELF4, PDCD8, RAB33A, SUHW3, SLC25A14, GPR119, RBMX2 q2523 131791560 133982363 RP11-679D1 RP11-235B13 23 2.190803 0.532928188 HS6ST2, USP26, TFDP3, GPC4, GPC3, PHF6, HPRT1, PLAC1, LOC159090, FAM122C, MOSPD1, FAM127C V_0254_LC21120_Iafrate et al. (2004) q26.2-q26.323 136296904 137135488 RP11-136K20 RP11-308P13 8 0.838584 0.342576118 ZIC3 q26.323 138451808 142407323 RP11-767M15 RP11-771D3 47 3.955515 0.628551541 F9, MCF2, ATP11C, LOC347487, SOX3, CDR1, SPANXB1, SPANXB2, LDOC1, SPANXC, SPANXA2, SPANXA1, SPANXD, SPANXE, MAGEC3, MAGEC1, MAGEC2, SPANX-N4 V_0255_LC21142_Iafrate et al. (2004), V_0827_LC21138_Sharp et al. (2005), V_2282_LC21138_Locke et al. (2006) q27.1-q27.3

23 147887745 154906914 RP11-373B10 RP11-1245L19 76 7.019169 0.408078305

AFF2, IDS, CXorf40A, LW-1, FAM11A, MAGEA11, LOC728269, MAGEA9, MAGEA8, FLJ16423, CXorf40B, CXorf6, MTM1, MTMR1, CD99L2, HMGB3, GPR50, LOC203547, PASD1, PRRG3, FATE1, CNGA2, MAGEA4, GABRE, MAGEA5, MAGEA10, GABRA3, GABRQ, MAGEA6, MAGEA12, CSAG1, MAGEA2, MAGEA2B, CSAG3A, CSAG2, MAGEA3, CETN2, NSDHL, PNMA5, PNMA3, PNMA6A, MAGEA1, ZNF275, TREX2, UIP1, BGN, ATP2B3, FAM58A, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP,

HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ, ATP6AP1, GDI1, FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, CTAG1A, CTAG1B, CTAG2, GAB3, DKC1, MPP1, F8, FUNDC2, MTCP1, CXorf53, VBP1, RAB39B, CLIC2, F8A1, F8A2, F8A3, H2AFB1, H2AFB3, H2AFB2, TMLHE V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q28

24 2909481 6691826 RP11-846I7 RP11-671A18 36 3.782345 0.490281595 ZFY, TGIF2LY, PCDH11Y, TSPY2 V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.31-p11.2


1 1896464 16680777 RP11-547D24 RP11-219J7 133 14.784313 -1.188865279

KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, ACTRT2, PRDM16, ARHGEF16, MEGF6, FAM79A, WDR8, TP73, KIAA0495, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2, IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10, PRAMEF3, PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2, KIAA1026, FLJ43806,

TMEM51, EFHD2, CTRC, ELA2A, ELA2B, CASP9, DNAJC16, AGMAT, DDI2, RSC1A1, SLC25A34, LOC388595, FBLIM1, SPEN, ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, C1orf117, EPHA2, ARHGEF19, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2

V_0003_LC0126_Iafrate et al. (2004), V_0004_LC0152_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005), V_0677_LC0152_Sharp et al. (2005), V_4192_LC0040_Wong et al. (2007), V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007), V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007), V_4203_LC0113_Wong et al. (2007), V_4204_LC0118_Wong et al. (2007), V_4205_LC0141_Wong et al. (2007), V_4206_LC0165_Wong et al. (2007), V_4207_LC0177_Wong et al. (2007),

V_4403_LC0152_Wong et al. (2007) p36.33-p36.13

1 17049946 39811460 RP11-497I3 RP11-69E11 248 22.761514 -0.603632119

PLA2G5, PLA2G2D, PLA2G2F, UBXD3, FLJ32784, CAMK2N1, C1orf166, FAM43B, CDA, PINK1, DDOST, KIF17, HP1BP3, EIF4G3, ECE1, NBPF3, ALPL, RAP1GA1, USP48, LDLRAD2, HSPG2, ELA3B, ELA3A, CDC42, WNT4, ZBTB40, EPHA8, C1QA, C1QC, C1QB, EPHB2, AOF2, LUZP1, HTR1D, HNRPR, ZNF436, LOC148898, TCEA3, DDEFL1, E2F2, ID3, RPL11, TCEB3, C1orf128, LYPLA2, GALE, HMGCL, FUCA1, CNR2, PNRC2, FUSIP1, MYOM3, IL22RA1, IL28RA, GRHL3, C1orf201, NPAL3, DSCR1L2, C1orf130, SRRM1, CLIC4, RUNX3, SYF2, C1orf63, RHD, TMEM50A, RHCE, TMEM57,

LDLRAP1, MAN1C1, SEPN1, FAM54B, C1orf135, PAQR7, FLJ32206, STMN1, PAFAH2, EXTL1, SLC30A2, TRIM63, PDIK1L, GRRP1, ZNF593, CNKSR1, CATSPER4, CCDC21, SH3BGRL3, UBXD5, CD52, FLJ38020, AIM1L, ZNF683, LIN28, DHDDS, HMGN2, RPS6KA1, ARID1A, PIGV, ZDHHC18, SFN, ATPBD1B, GPATC3, NR0B2, NUDC, C1orf172, LOC388610, FAM46B, SLC9A1, WDTC1, C1orf160, SYTL1, MAP3K6, FCN3, CD164L2, GPR3, WASF2, AHDC1, FGR, IFI6, FAM76A, STX12, PPP1R8, C1orf38, RPA2, SMPDL3B, XKR8, EYA3, PTAFR, DNAJC8, ATPIF1, SESN2, MED18, PHACTR4,

SNHG3-RCC1, RCC1, TRSPAP1, RAB42, TAF12, GMEB1, YTHDF2, OPRD1, EPB41, TTMB, SFRS4, MECR, PTPRU, MATN1, LAPTM5, SDC3, PUM1,

V_0006_LC0305_Iafrate et al. (2004), V_0680_LC0248_Sharp et al. (2005), V_2045_LC0219_Locke et al. (2006), V_2046_LC0230_Locke et al. (2006), V_2047_LC0248_Locke et al. (2006), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al. (2007), V_4213_LC0201_Wong et al. (2007), V_4214_LC0213_Wong et al. (2007), V_4215_LC0219_Wong et al. (2007), V_4216_LC0219_Wong et al. (2007),


4 39105 191137774 RP11-335H3 CTD-2011O21 1545 191.098669 -2.341710798

ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, TETRAN, C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1,

PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131, LOC650293, DRD5, SLC2A9, WDR1, KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL, SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721, PCDH7, CENTD1, FLJ11017, RELL1, PGM2, TBC1D1, PTTG2, KLF3, TLR10, TLR1, TLR6, LOC92689, FLJ23235, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS, UGDH, LOC201895, HIP2, SCC-112, N4BP2, RHOH, CHRNA9, FLJ20273,

FLJ14001, APBB2, UCHL1, DKFZP686A012, PHOX2B, TMEM33, WDR21B, SLC30A9, CCDC4, LOC152573, ATP8A1, LOC389207, KCTD8, YIPF7, GUF

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0050_LC5522_Iafrate et al. (2004), V_0051_LC5838_Iafrate et al. (2004), V_0052_LC5911_Iafrate et al. (2004), V_0053_LC5929_Iafrate et al. (2004), V_0054_LC6039_Iafrate et al. (2004), V_0057_LC6244_Iafrate et al. (2004), V_0130_LC4464_Iafrate et al. (2004), V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_0700_LC4677_Sharp et al. (2005), V_0701_LC4909_Sharp et al. (2005), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_2066_LC4068_Locke et al. (2006), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_2071_LC4709_Locke et al. (2006), V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007),

V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_ p16.3-q35.25 72312 504867 RP11-811I15 RP11-597A21 3 0.432555 -0.520147468 KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3 V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong et al. (2007) p15.335 1356206 3588044 RP11-600M8 RP13-513C3 24 2.231838 -0.644793408 CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4, IRX2, CEI p15.335 4057459 12945841 RP11-128A3 RP11-57H16 88 8.888382 -0.654433546 ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2 V_2082_LC6572_Locke et al. (2006), V_4430_LC6506_Wong et al. (2007) p15.33-p15.2

5 13465637 18536186 RP11-175H24 RP11-298P8 63 5.070549 -0.466204821 DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10, BASP1 V_0061_LC6634_Iafrate et al. (2004), V_4431_LC6634_Wong et al. (2007), V_4432_LC6634_Wong et al. (2007), V_5051_LC6639_Wong et al. (2007) p15.2-p14.36 50502234 53183514 RP11-512M24 RP11-730O11 21 2.68128 -0.476322463 TFAP2D, TFAP2B, PKHD1, IL17, IL17F, MCM3, PAQR8, EFHC1, TRAM2, TMEM14A, GSTA2, GSTA1, GSTA5, GSTA3, GSTA4, ICK, FBXO9, GCM1 p12.3-p12.16 55796805 56304819 RP11-619C9 RP11-292O14 5 0.508014 -0.323360826 BMP5, COL21A1 p12.16 57442546 63690838 RP11-158I24 RP13-508D12 36 6.248292 -0.410676726 PRIM2A, GUSBL2, KHDRBS2 V_0080_LC8417_Iafrate et al. (2004), V_0081_LC8420_Iafrate et al. (2004), V_4496_LC8416_Wong et al. (2007) p11.2-q12

6 67459297 162698441 CTD-2034K14 RP11-168A5 951 95.239144 -0.612164049

BAI3, LMBRD1, COL19A1, COL9A1, KIAA1411, C6orf57, SMAP1, B3GAT2, OGFRL1, RIMS1, KCNQ5, C6orf148, DPPA5, ECAT1, LOC441161, DDX43, C6orf150, MTO1, EEF1A1, SLC17A5, CD109, COL12A1, COX7A2, TMEM30A, FILIP1, SENP6, MYO6, IMPG1, HTR1B, IRAK1BP1, PHIP, HMGN3, C6orf152, SH3BGRL2, ELOVL4, TTK, BCKDHB, FAM46A, IBTK, TPBG, C6orf157, DOPEY1, PGM3, RWDD2, ME1, PRSS35, SNAP91, C6orf159, CYB5R4, C6orf117, C6orf84, TBX18, NT5E, SNX14, SYNCRIP, HTR1E, CGA, GJB7, C6orf162, C6orf165, SLC35A1, RARSL, ORC3L, C6orf166, SPACA1,CNR1, RNGTT, PNRC1, SRrp35, ACY1L2, GABRR1, GABRR2, UBE2J1, RRAGD, ANKRD6, LYRM2, MDN1, CASP8AP2, CX62, BACH2, MAP3K7, EPHA7, MANEA, FUT9, KIAA0776, FHL5, GPR63, C6orf66, KLHL32, C6orf167, POU3F2, FBXL4, C6orf168, COQ3, C6orf111, USP45, CCNC, PRDM13, MCHR2, SIM1, ASCC3, GRIK2, HACE1, LIN28B, BVES, POPDC3, PREP, PRDM1, ATG5, AIM1, RTN4IP1, QRSL1, C6orf203, KIAA1553, PDSS2, FLJ10159, SCML4, SEC63, OSTM1, NR2E1, SNX3, LACE1, FOXO3A, ARMC2, SESN1, C6orf182, C10orf37, CD164, PPIL6, SMPD2, MICAL1, ZBTB24, FLJ25791, FLJ42177, C6orf199, KIAA0274, GPR6, WASF1, CDC40, DDO, SLC22A16, CDC2L6, AMD1, C6orf51, BXDC1, SLC16A10, KIAA1919, REV3L, TRAF3IP2, FYN, WISP3, TUBE1, LOC619208, LAMA4, LOC442247, MARCKS, FLJ34503, HDAC2, HS3ST5, FRK, NT5DC1, COL10A1, TSPYL4,

TSPYL1, DSE, LOC441168, C6orf188, C6orf78, RWDD1, RSHL3, C6orf113, KPNA5, GPRC6A, RFXDC1, VGLL2, ROS1, DCBLD1, GOPC, C6orf68, SLC3

V_0086_LC8475_Iafrate et al. (2004), V_0087_LC8488_Iafrate et al. (2004), V_0089_LC8676_Iafrate et al. (2004), V_0090_LC8741_Iafrate et al. (2004), V_0091_LC8757_Iafrate et al. (2004), V_0092_LC8865_Iafrate et al. (2004), V_0360_LC8473_Shaw-Smith et al. (2004), V_4497_LC8475_Wong et al. (2007),

V_4498_LC8515_Wong et al. (2007), V_4499_LC8546_Wong et al. (2007), V_4500_LC8569_Wong et al. (2007), V_4501_LC8583_Wong et al. (2007), V_4502_LC8592_Wong et al. (2007), V_4503_LC8644_Wong et al. (2007), V_4504_LC8662_Wong et al. (2007), V_4505_LC8672_Wong et al. (2007), V_4506_LC8686_Wong et al. (2007), V_4507_LC8786_Wong et al. (2007), V_4508_LC8791_Wong et al. (2007), V_4509_LC8851_Wong et al. (2007), V_4510_LC8882_Wong et al. (2007), V_4511_LC8897_Wong et al. (2007), V_4512_LC8905_Wong et al. (2007), V_4513_LC8977_Wong et al. (2007),

V_4514_LC8985_Wong et al. (2007), V_4702_LC8905_Wong et al. (2007) q12-q26

6 162984801 170851849 CTD-2019O18 RP11-113J6 74 7.867048 -0.815788539PARK2, PACRG, QKI, C6orf118, PDE10A, LOC441177, T, MGC35308, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31, UNC93A, TTLL2, TCP10, LOC401286, LOC653483, MLLT4, KIF25, FRMD1, DACT2, SMOC2, THBS2, WDR27, C6orf120, PHF10, TCTE3, C6orf70, C6orf122,

C6orf208, DLL1, KIAA1838, PSMB1, TBP, PDCD2V_2098_LC9057_Locke et al. (2006), V_4515_LC9007_Wong et al. (2007), V_4516_LC9028_Wong et al. (2007), V_4517_LC9032_Wong et al. (2007),

V_4518_LC9057_Wong et al. (2007) q26-q277 55614733 57368235 RP11-535N12 RP11-747K23 17 1.753502 -0.366951127 FKBP9L, FLJ44060, ZNF713, MRPS17, GBAS, PSPH, CCT6A, SUMF2, PHKG1, CHCHD2, LOC401357 V_0720_LC9535_Sharp et al. (2005) p11.2

7 61613655 62539297 RP11-34I22 RP11-1162A20 9 0.925642 -0.402168499V_0104_LC9545_Iafrate et al. (2004), V_0721_LC9545_Sharp et al. (2005), V_2100_LC9545_Locke et al. (2006), V_4540_LC9545_Wong et al. (2007),

V_0375_LC9545_Bejjani et al. (2005) q11.21

7 64803841 75963306 RP11-265G24 RP11-351A5 132 11.159465 -0.874083814

VKORC1L1, GUSB, ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24,

RHBDD2, POR, TMPIT, STYXL1, MDH2, FLJ37078, HSPB1, YWHAG, SRCRB4D, ZP3, DTX2V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007),


7 99511524 102274432 RP11-494B20 RP11-694M1 28 2.762908 -0.453949686

ZNF3, COPS6, MCM7, AP4M1, TAF6, MGC40499, LOC255374, LOC389541, FLJ10925, GAL3ST4, GPC2, STAG3, GATS, MGC2463, MGC57359, PILRB, PILRA, ZCWPW1, BCDIN3, C7orf47, LOC402573, TSC22D4, FLJ37538, HRBL, LRCH4, FBXO24, PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, PERQ1, POP7, EPO, ZAN, EPHB4, SLC12A9, TRIP6, ARS2, LOC402682, ACHE, MUC17, TRIM56, SERPINE1, AP1S1, VGF, FLJ39237, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYLC2PL, CUTL1, SH2B2, PRKRIP1, C7orf19, ALKBH4, DKFZp434K181, POLR2J, MGC119295,

POLR2J3, RASA4, POLR2J2, MGC35361, FBXL13

V_0107_LC9766_Iafrate et al. (2004), V_0724_LC9769_Sharp et al. (2005), V_2104_LC9753_Locke et al. (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_4551_LC9756_Wong et al. (2007),


11 60103197 61524883 RP11-743C17 RP11-61G16 17 1.421686 -0.916229895MS4A8B, MGC35295, MS4A10, CCDC86, GPR44, ZP1, PRPF19, TMEM109, TMEM132A, SLC15A3, CD6, CD5, VPS37C, PGA3, PGA4, PGA5, VWCE, DDB1, DAK, CYBASC3, TMEM138, MGC13379, FLJ12529, FLJ20487, C11orf66, SYT7, C11orf11, C11orf9, C11orf10, FEN1, FADS1, FADS2, FADS3,

RAB3IL1, VMD2, FTH1, LOC399900 V_4747_LC13245_Wong et al. (2007), V_4748_LC13245_Wong et al. (2007) q12.2-q12.3

11 62116800 71201465 RP11-831H9 RP11-31I14 84 9.084665 -0.812001182

SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, HRASLS3, DKFZP564J086, RTN3, LOC144097, MARK2, RCOR2, NAT11, COX8A, OTUB1, LRP16, FLRT1, STIP1, URP2, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, KCNK4, ESRRA, HSPC152, PRDX5, CCDC88, RPS6KA4, SLC22A11, SLC22A12, NRXN2, RASGRP2, PYGM, SF1, MAP4K2, MEN1, CDC42BPG, EHD1, KIAA0404, PPP2R5B, GPHA2, LOC283129, BATF2, ARL2, SNX15, SAC3D1, NAALADL1, CDCA5, ZFPL1, C11orf2, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, LOC387778, CAPN1,

FLJ16331, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FKSG44, SCYL1, LTBP3, SSSCA1, FAM89B, KCNK7, MAP3K11, SIPA1, RELA, HTATIP, RNASEH2C, DKFZp761E198, OVOL1, FLJ30934, CFL1, MUS81, EFEMP2, CTSW, FIBP, DIPA, FOSL1, C11orf68, DRAP1, TSGA10IP, SART1, MGC11102, BANF1, CST6, CATSPER1, GAL3ST3, SF3B2, PACS1, KLC2, RAB1B, CNIH2, YIF1A, MGC33486, CD248, RIN1, BRMS1, B3GNT1, SLC29A2, NPAS4, MRPL11, PELI3, DPP3, BBS1, ZDHHC24, ACTN3, CTSF, CCDC87, CCS, RBM14, RBM4, RBM4B, SPTBN2, FLJ22531, RCE1, PC, LRFN4,

SYT12, RHOD, FBXL11, ADRBK1, ANKRD13D, SSH3, POLD4, CLCF1, RAD9A, PPP1CA, TBC1D10C, RPS6KB2, PTPRCAP, CORO1B, GPR152, CABP


V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) q12.3-q13.411 79877023 80883273 RP11-738I24 RP11-497J24 10 1.00625 -0.880453023 q14.1

13 17918020 114117194 RP11-77P19 RP11-228M6 811 96.199174 -1.161370204

TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3,FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1,

B3GTL, RXFP2, FRY, BRCA2, CG018, PFAAP5, APRIN, KL, STARD13, RFC3, NBEA, MAB21L1, DCAMKL1, SOHLH2, SPG20, CCNA1, LOC400120, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6, FOXO1A, MRPS31, SLC25A15, ELF1, WBP4, KBTBD6, KBTBD7, MTRF1, NARG1L, RGC32, KIAA0564, DGKH, AKAP11, TNFSF11, FLJ40919, EPSTI1, DNAJC15, PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13,CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7, FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70,

ATP7B, LOC440138, UTP14C, NEK5, NEK3, THSD1, VPS36, CKAP2, LOC144983, SUGT1, LECT1, PCDH8, OLFM4, FLJ40296, PCDH17, DIAPH3, TDR

V_0167_LC14662_Iafrate et al. (2004), V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4797_LC14674_Wong et al. (2007), V_4798_LC14797_Wong et al. (2007), V_4799_LC14805_Wong et al. (2007), V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007), V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007),

V_4899_LC14682_Wong et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) q11-q3415 18898414 19133581 RP11-403L7 RP11-552D3 3 0.235167 -0.764241997 LOC283755 V_4865_LC16090_Wong et al. (2007), V_4866_LC16090_Wong et al. (2007), V_4867_LC16090_Wong et al. (2007) q11.2

15 20026206 35667055 RP13-512L9 RP11-624A17 155 15.640849 -0.866461303TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7,

CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2

V_0183_LC16121_Iafrate et al. (2004), V_0185_LC16139_Iafrate et al. (2004), V_0186_LC16139_Iafrate et al. (2004), V_0187_LC16139_Iafrate et al. (2004), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_2183_LC16090_Locke et al. (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. (2007), V_4876_LC16139_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007), V_4878_LC16090_Wong et al. (2007), V_4879_LC16090_Wong et al. (2007), V_4880_LC16090_Wong et al. (2007), V_4881_LC16090_Wong et al. (2007), V_4882_LC16139_Wong et al. (2007), V_4883_LC16139_Wong et al. (2007),

V_4884_LC16139_Wong et al. (2007), V_4885_LC16139_Wong et al. (2007), V_488 q11.2-q1415 62602005 63674813 RP13-494K10 RP11-668O18 8 1.072808 -0.59885068 ZNF609, OAZ2, RBPMS2, C15orf20, PLEKHQ1, ANKDD1A, SPG21, MTFMT, OSTbeta, RASL12, PDCD7, CLPX, CILP, PARP16, PUNC, NOPE, DPP8, PTPLAD1, C15orf44 q22.31

15 70437159 86439592 RP11-660B20 RP11-159D9 131 16.002433 -0.773309209

HEXA, FLJ27523, ARIH1, GOLGA, BBS4, ADPGK, NEO1, HCN4, LOC283677, NPTN, CD276, LOC388135, TBC1D21, LOXL1, STOML1, PML, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, SEMA7A, UBL7, ARID3B, CLK3, LSM16, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, SCAMP2, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC, C15orf39, COMMD4, NEIL1, MAN2C1, SIN3A, PTPN9, SNUPN, IMP3, SH3PX3, CSPG4, ODF3L1, UBE2Q2, FBXO22, NRG4, C15orf27, ETFA, ISL2, ZNF291, RCN2, PSTPIP1, TSPAN3, HMG20A, LRRN6A, TBC1D2B, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, LOC123688, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, MORF4L1, CTSH, RASGRF1, TMED3, KIAA1024, MTHFS, C15orf37, BCL2A1, ZA20D3, FAH, ARNT2, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5, TMC3, RKHD3, EFTUD1, DKFZp666G057,

FLJ22795, RPS17, CPEB1, AP3B2, FSD2, WHDC1, HOMER2, FAM103A1, C15orf40, BTBD1, TM6SF1, HDGFRP3, BNC1, SH3GL3, ADAMTSL3, KIAA1920, ZSCAN2, WDR73, NMB, SEC11L1, ZNF592, ALPK3, SLC28A1, PDE8A, AKAP13, KLHL25, FLJ32310, NTRK3

V_0189_LC16389_Iafrate et al. (2004), V_0190_LC16450_Iafrate et al. (2004), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2195_LC16389_Locke et al. (2006), V_2196_LC16398_Locke et al. (2006), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4905_LC16412_Wong et al. (2007), V_4906_LC16417_Wong et al. (2007),

V_4907_LC16456_Wong et al. (2007), V_4908_LC16467_Wong et al. (2007) q24.1-q25.316 2491719 2935707 RP11-20I23 RP11-613G15 5 0.443988 -0.368203259 KIAA1171, ATP6V0C, AMDHD2, CP-23, PDPK1, LOC283874, KCTD5, PRSS27, SRRM2, TCEB2, PRSS33, PRSS21, LOC124220, PRSS22, LOC114984, FLYWCH1 V_4918_LC16593_Wong et al. (2007), V_4919_LC16593_Wong et al. (2007), V_4920_LC16652_Wong et al. (2007) p13.3

16 4193491 10792855 RP11-803N7 CTD-2023I3 62 6.599364 -0.708251469TFAP4, GLIS2, Magmas, CORO7, SLITL2, DNAJA3, HSCARG, HMOX2, C16orf5, FAM100A, MGRN1, NUDT16L1, ANKS3, LOC146562, ZNF500, ROGDI, N-PAC, UBN1, PPL, NAGPA, MGC45438, ALG1, FAM86A, A2BP1, C16orf68, ABAT, TMEM186, PMM2, CARHSP1, USP7, PRO0149, GRIN2A,

ATF7IP2, EMP2, FLJ32871, NUBP1, LOC780776 p13.3-p13.13

16 15316547 16684023 RP11-739A11 RP11-726J15 14 1.367476 -0.359183778 FLJ39599, C16orf45, LKAP, NDE1, MYH11, C16orf63, ABCC1, ABCC6

V_2203_LC16733_Locke et al. (2006), V_2204_LC16736_Locke et al. (2006), V_2205_LC16736_Locke et al. (2006), V_4924_LC16730_Wong et al. (2007), V_4925_LC16730_Wong et al. (2007), V_4926_LC16734_Wong et al. (2007), V_4927_LC16736_Wong et al. (2007), V_4928_LC16736_Wong et al. (2007),

V_4929_LC16736_Wong et al. (2007) p13.1116 17074705 17760316 RP11-2M20 RP11-205E24 7 0.685611 -0.328155967 XYLT1 p12.316 20729162 21327085 RP11-481A2 CTD-2138I8 4 0.597923 -0.292136807 LOC81691, DCUN1D3, LOC57149, DNAH3, LOC57146, ZP2, ANKS4B, CRYM, LOC400509 V_4931_LC16758_Wong et al. (2007) p12.216 22743613 25034827 RP11-207A10 RP11-620P1 19 2.291214 -0.378316597 HS3ST2, USP31, SCNN1G, SCNN1B, COG7, GGA2, EARS2, KIAA1970, UBPH, NDUFAB1, PALB2, DCTN5, PLK1, ERN2, LOC63928, PRKCB1, CACNG3, RBBP6, FLJ45256, TNRC6A, SLC5A11, ARHGAP17, LCMT1 V_4935_LC16781_Wong et al. (2007) p12.1

Gains

Losses

KK

16 68414096 69127224 RP11-728C23 RP11-715L2 6 0.713128 -0.575275609 WWP2, PDPR, MGC34761, EXOSC6, AARS, DDX19B, DDX19A, ST3GAL2, FUK, COG4, SF3B3V_0797_LC16959_Sharp et al. (2005), V_2216_LC16959_Locke et al. (2006), V_4963_LC16959_Wong et al. (2007), V_4964_LC16959_Wong et al. (2007),

V_4965_LC16963_Wong et al. (2007) q22.116 71566542 74403212 RP11-608H1 RP11-37L6 26 2.83667 -0.684512362 ATBF1, PSMD7, LOC440348, LOC348174, LOC497190, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1, CTRB2, CTRB1, BCAR1, CFDP1, LOC124491, CHST6, CHST5, FLJ22167, GABARAPL2, ADAT1, KARS, TERF2IP V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007) q22.3-q23.116 76762805 78093717 RP11-737J9 RP11-342A3 22 1.330912 -1.040284684 WWOX q23.1

16 82567035 88686715 RP11-274I19 RP11-665E3 70 6.11968 -0.837759694

EFCBP2, LOC146167, MBTPS1, HSDL1, LRRC50, TAF1C, LOC161931, KCNG4, WFDC1, ATP2C2, KIAA1609, COTL1, C16orf44, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, KIAA0182, Pfs2, MGC17624, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZFPM1, FLJ45530, NHN1, IL17C, CYBA, MVD, SNAI3, RNF166, LOC348180, FAM38A, FLJ45121, FLJ40448, CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3, LOC197322, CDH15, ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A,

PCOLN3, C16orf55, CDK10, MGC26885, C16orf7, ZNF276, FANCA, SPIRE2, NULP1, MC1R, TUBB3, FLJ20186, MGC16385, DBNDD1, MGC3101, GAS8, C16orf3, PRDM7



17 52192 11165806 CTD-2326F1 RP11-466J1 121 11.113614 -0.691982223

RUTBC1, MNT, LOC284009, METT10D, PAFAH1B1, KIAA0664, GARNL4, OR1D4, OR1D5, OR1D2, OR1G1, OR1A2, OR1A1, OR3A2, OR3A1, OR3A4, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3, TRPV1, CARKL, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, P2RX1, ATP2A3, ZZEF1, CYB5D2, ANKFY1, UBE2G1, MGC29671, MYBBP1A, GGT6, FLJ42461, ALOX15, PELP1, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, LOC388323, PSMB6, PLD2, MINK1, CHRNE, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, UNQ5783, RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1, KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1, ALOX12, MGC71993, C17orf49, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2, PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, TMEM95, TNK1, PLSCR3, C17orf61, NLGN2, C17orf83, C17orf74, TMEM102, FGF11, CHRNB1, ZBTB4, POLR2A, TNFSF12, TNFSF12-TNFS, TNFSF13,

SENP3, EIF4A1, CD68, MPDU1, SOX15, FXR2, SAT2, SHBG, ATP1B2, TP53, WDR79, EFNB3, DNHD3, JMJD3, TMEM88, LSMD1, CYB5D1, CHD3, KC

V_2217_LC17259_Locke et al. (2006), V_4979_LC17159_Wong et al. (2007), V_4980_LC17159_Wong et al. (2007), V_4981_LC17250_Wong et al. (2007), V_4982_LC17265_Wong et al. (2007), V_4983_LC17269_Wong et al. (2007), V_4984_LC17276_Wong et al. (2007), V_4985_LC17280_Wong et al. (2007), V_4986_LC17280_Wong et al. (2007), V_4987_LC17280_Wong et al. (2007), V_4988_LC17315_Wong et al. (2007), V_4989_LC17333_Wong et al. (2007) p13.3-p13.1

18 17653 7812629 RP11-683L23 RP11-314M20 79 7.794976 -1.210819794 USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3, TTMA, L3MBTL4, ARHGAP28, LAMA1, PTPRM V_5044_LC17825_Wong et al. (2007) p11.32-p11.23

18 8182007 76098439 RP11-386O2 RP11-565D23 636 67.916432 -0.923035939

PTPRM, RAB12, KIAA0802, NDUFV2, ANKRD12, TWSG1, RALBP1, PPP4R1, RAB31, TXNDC2, VAPA, APCDD1, NAPG, FAM38B, GNAL, CHMP1B, MPPE1, IMPA2, CIDEA, TUBB6, AFG3L2, C18orf43, SPIRE1, CEP76, TNFSF5IP1, PTPN2, SEH1L, CEP192, C18orf1, C18orf19, RNMT, MC5R, MC2R, ZNF519, MGC26718, ROCK1, KIAA1772, ESCO1, SNRPD1, ABHD3, MIB1, GATA6, CTAGE1, RBBP8, CABLES1, C18orf45, RIOK3, C18orf8, NPC1, ANKRD29, LAMA3, C18orf17, CABYR, OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, KCTD1, AQP4, CHST9, CDH2, DSC3, DSC2, DSC1, DSG1,

DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, MEP1B, FAM59A, KLHL14, C18orf34, NOL4, DTNA, MAPRE2, ZNF397, ZNF271, ZNF24, ZNF396, C18orf37, GALNT1, C18orf21, P15RS, SLC39A6, STATIP1, MOCOS, FHOD3, C18orf10, KIAA1328, BRUNOL4, PIK3C3, RIT2, SYT4, SETBP1, SLC14A2, SLC14A1, CD33L3, KIAA1632, PSTPIP2, ATP5A1, CCDC5, C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, TCEB3C, TCEB3B, HDHD2, IER3IP1, SMAD2, ZBTB7C, KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1,

PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERP

V_0216_LC18106_Iafrate et al. (2004), V_0217_LC18181_Iafrate et al. (2004), V_0218_LC18301_Iafrate et al. (2004), V_2236_LC17918_Locke et al. (2006), V_5045_LC17914_Wong et al. (2007), V_5046_LC17976_Wong et al. (2007), V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007), V_5050_LC18106_Wong et al. (2007), V_5052_LC18144_Wong et al. (2007), V_5053_LC18156_Wong et al. (2007), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007),

V_5062_LC18530_Wong et al. (2007), V_5064_LC18537_Wong et al. (2007) p11.23-q23

19 75953 8709106 RP11-505K21 RP11-1077G12 79 8.633153 -0.546718315

FLJ45445, PPAP2C, KIAA1193, THEG, SHC2, C19orf19, MADCAM1, C19orf20, CDC34, GZMM, BSG, HCN2, POLRMT, FGF22, RNF126, FSTL3, PRSSL1, PALM, C19orf21, PTBP1, PRG2, AZU1, PRTN3, ELA2, CFD, THRAP5, C19orf22, KISS1R, ARID3A, WDR18, GRIN3B, C19orf6, CNN2, ABCA7,HMHA1, POLR2E, GPX4, KIAA0963, STK11, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, LOC401019, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5, RKHD1, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4,

LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R, C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK, KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD,

MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2, KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30, FEM1A, TICAM1, M6PRBP1, ARRDC5, C19orf31, UHRF1, JMJD2B, PTPRS, ZNRF4, PLAC2, SAFB2, SAFB, P117, SCDR10, RPL36, PRSS15, TMEM146, MGC24975, DUS3L, NRTN, FUT6, FUT3, FUT5, NDUFA11, VMAC, CAPS, RANBP3, RFX2, ACSBG2, MLLT1, ASAH3, CLPP, ALKBH7, PSPN


19 8751188 63770533 RP13-622L9 CTD-2575K21 565 55.019345 -0.9119419

ZNF558, MBD3L1, MUC16, OR1M1, OR7G2, OR7G1, OR7G3, ZNF317, OR7D2, OR7D4, OR7E24, ZNF699, ZNF559, ZNF177, ZNF266, ZNF560, ZNF426, ZNF121, ZNF561, ZNF562, LOC162993, FBXL12, UBL5, PIN1, OLFM2, COL5A3, RDH8, LOC388503, FLJ11286, ANGPTL6, PPAN, PPAN-P2RY11, P2RY11, EIF3S4, DNMT1, EDG5, MRPL4, ICAM1, ICAM4, ICAM5, MGC19604, RAVER1, ICAM3, TYK2, CDC37, PDE4A, KEAP1, EDG8, ATG4D, FLJ12949, CDKN2D, AP1M2, SLC44A2, ILF3, QTRT1, DNM2, TMED1, CARM1, YIPF2, LOC90580, SMARCA4, LDLR, SPBC24, ANKRD25, DOCK6,

LOC55908, TSPAN16, RAB3D, UNQ501, LOC126075, LPPR2, FLJ35119, EPOR, RGL3, MGC20983, PRKCSH, ELAVL3, ZNF653, SITPEC, CNN1, ELOF1, ACP5, ZNF627, LOC401898, HSZFP36, ZNF441, ZNF491, ZNF439, ZNF69, ZNF700, ZNF440L, ZNF433, LOC729747, ZNF20, ZNF625, ZNF136, ZNF44, ZNF563, ZNF442, ZNF443, ZNF709, ZNF564, ZNF490, FLJ90396, MAN2B1, C19orf56, MORG1, DHPS, FBXW9, TNPO2, MGC2803, ASNA1, BEST2, HOOK2, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, DNASE2, KLF1, GCDH, FARSA, CALR, RAD23A, GADD45GIP1, DAND5, NFIX, LYL1, TRMT1, BTBD14B, STX10, IER2, CACNA1A, MGC10471, MGC3207, HSPC023, ZSWIM4, MGC11271, CC2D1A, FLJ23447, LOC90379, RFX1, RLN3, IL27RA, SAMD1, PRKACA, ASF1B, LPHN1, CD97, DDX39, PKN1, PTGER1, GIPC1, DNAJB1, GPSN2, NDUFB7, FLJ45910, EMR3, ZNF333, EMR2,

OR7C1, OR7A5, OR7A10, OR7A17, OR7C2, SLC1A6, FLJ40365, CASP14, OR1I1, SYDE1, ILVBL, NOTCH3, ABHD9, BRD4, AKAP8, AKAP8L, FLJ2143

V_0220_LC18794_Iafrate et al. (2004), V_0221_LC19039_Iafrate et al. (2004), V_0809_LC19144_Sharp et al. (2005), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_2242_LC18908_Locke et al. (2006), V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. (2006), V_2245_LC19036_Locke et al. (2006), V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et al. (2006), V_2248_LC19144_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007), V_5087_LC18821_Wong et al. (2007), V_5088_LC18841_Wong et al. (2007), V_5089_LC18844_Wong et al. (2007), V_5090_LC18847_Wong et al. (2007), V_5091_LC18881_Wong et al. (2007), V_5092_LC18883_Wong et al. (2007), V_5093_LC18883_Wong et al. (2007), V_5094_LC18905_Wong et al. (2007), V_5095_LC18908_Wong et al. (2007), V_5096_LC18924_Wong et al. (2007), V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007), V_5099_LC18991_Wong et al. (2007),

V_5100_LC19016_Wong et al. (2007), V_5101_LC19026_Wong et al. (2007), V_510 p13.2-q13.43

20 37210 3238538 CTD-2506E2 RP11-26F18 29 3.201328 -0.762728906DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55, ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35,

TGM3, TGM6, SNRPB, ZNF343, TMC2, NOL5A, IDH3B, CPXM, C20orf141, FAM113A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5, FLJ13149, ProSAPiP1, C20orf116, ITPA, SLC4A11V_0222_LC19227_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007),

V_5121_LC19253_Wong et al. (2007) p13

22 14747425 24204902 RP11-561P7 RP11-261O10 86 9.457477 -1.022228547

OR11H1, CESK1, XKR3, GAB4, IL17RA, CECR6, CECR5, CECR1, SLC25A18, ATP6V1E1, BCL2L13, BID, PEX26, TUBA8, USP18, DGCR6, PRODH, DGCR2, DGCR14, TSSK2, GSCL, SLC25A1, CLTCL1, HIRA, MRPL40, LOC128977, UFD1L, CDC45L, CLDN5, GP1BB, TBX1, GNB1L, C22orf29, TXNRD2, COMT, ARVCF, C22orf25, DGCR8, HTF9C, RANBP1, ZDHHC8, RTN4R, DGCR6L, ZNF74, SCARF2, KLHL22, PCQAP, PIK4CA, SERPIND1, SNAP29, CRKL, AIFL, LZTR1, THAP7, MGC16703, P2RXL1, SLC7A4, LOC400891, FLJ42953, HIC2, LOC220686, LOC375133, UBE2L3, LOC150223, FLJ36046, SDF2L1, PPIL2, YPEL1, MAPK1, PPM1F, TOP3B, VPREB1, SUHW2, SUHW1, PRAME, GGTL4, RTDR1, GNAZ, RAB36, BCR, FLJ31568, LOC388882, IGLL1, LOC51233, Rgr, ZNF70, VPREB3, C22orf15, C22orf16, MMP11, SMARCB1, DERL3, SLC2A11, MIF, LOC653689, LOC100037417,

DDT, GSTT2, GSTT1, CABIN1, SUSD2, GGTLA1, KIAA0376, ADORA2A, UPB1, C22orf13, SNRPD3, C22orf36, GGT1, PIWIL3, RUTBC2, bA9F11.1, CRYBB3, CRYBB2, LOC91353, LRP5L

V_0235_LC20386_Iafrate et al. (2004), V_0688_LC20386_Sharp et al. (2005), V_0813_LC20342_Sharp et al. (2005), V_0814_LC20342_Sharp et al. (2005), V_0815_LC20342_Sharp et al. (2005), V_0816_LC20342_Sharp et al. (2005), V_0817_LC20342_Sharp et al. (2005), V_0818_LC20342_Sharp et al. (2005), V_0819_LC20395_Sharp et al. (2005), V_2029_LC20395_Urban et al (2006), V_2030_LC20342_Urban et al (2006), V_2031_LC20342_Urban et al (2006), V_2032_LC20386_Urban et al (2006), V_2033_LC20386_Urban et al (2006), V_2034_LC20342_Urban et al (2006), V_2035_LC20386_Urban et al (2006),

V_2036_LC20386_Urban et al (2006), V_2257_LC20342_Locke et al. (2006), V_2258_LC20342_Locke et al. (2006), V_2259_LC20342_Locke et al. (2006), V_2260_LC20342_Locke et al. (2006), V_2261_LC20342_Locke et al. (2006), V_2262_LC20342_Locke et al. (2006), V_2263_LC20342_Locke et al. (2006), V_2264_LC20342_Locke et al. (2006), V_2265_LC20342_Locke et al. (2006), V_2266_LC20342_Locke et al. (2006), V_2267_LC20342_Locke et al. (2006), V_2268_LC20342_Locke et al. (2006), V_2269_LC20395_Locke et al. (2006), V_2270_LC20395_Locke et al. (2006), V_2271_LC20395_Locke et al. (2006),

V_2272_LC20395_Locke et al. (2006), V_5166_LC20342_Wong et al. (2007), V_51 q11.1-q11.23

22 26459879 37940950 RP11-99K6 RP11-714K23 105 11.481071 -0.754552552

MN1, PITPNB, CHEK2, HSC20, FLJ33814, XBP1, HS747E2A, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RRP22, AP1B1, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UCRC, ASCC2, MTMR3, LOC400924, HORMAD2, LIF, OSM, LOC652968, TBC1D10A, SF3A1, LOC550631, LOC200312, SEC14L2, MTP18, SEC14L3, SEC14L4, GAL3ST1, PES1, TCN2, SLC35E4, DUSP18, OSBP2, MORC2, SMTN, SELM, PIB5PA, PLA2G3, RNF185, LIMK2, MGC17330, ZNF278, DRG1, EIF4ENIF1, SFI1, PISD, MGC50372, DEPDC5, YWHAH, LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28, BPIL2, FBXO7, SYN3, TIMP3, LARGE, RAXLX, HMG2L1, TOM1, HMOX1, MCM5, RASD2, MB, LOC284912, APOL6, APOL5, RBM9, APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB, NCF4, CSF2RB, MGC35206, TST, MPST,

KCTD17, TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2, PSCD4, KIAA1904, MFNG, CARD10, CDC42EP1, LGALS2, GGA1, SH3BP1, PDXP, LGALS1, MGC3731, TRIOBP, H1F0, GCAT, GALR3, LOC129138, EIF3S6IP, MICAL-L1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF,C22orf5, CSNK1E, KCNJ4, KDELR3, DDX17, DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7

V_0236_LC20439_Iafrate et al. (2004), V_0237_LC20476_Iafrate et al. (2004), V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5181_LC20466_Wong et al. (2007), V_5182_LC20466_Wong et al. (2007), V_5183_LC20479_Wong et al. (2007), V_5184_LC20492_Wong et al. (2007),


chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands2 113898809 114238497 RP11-548H23 RP11-702P7 3 0.339688 0.532831705 CBWD2, FOXD4L1, RABL2A, SLC35F5 q14.12 212932892 213388041 RP11-609G5 RP11-329G9 4 0.455149 0.636177919 ERBB4 q343 150570473 151234541 RP11-398B7 RP11-651P23 8 0.664068 0.864590092 TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2 q25.13 188813069 189352040 RP11-1E24 RP11-464D9 5 0.538971 0.624209072 SST, RTP2, BCL6 q27.33 191490396 191745029 RP11-752K1 RP11-697G7 3 0.254633 0.583494408 CLDN1, CLDN16, UNQ846, IL1RAP q288 127851608 130745615 RP11-664D24 RP11-259L23 24 2.894007 0.650562167 MYC, TMEM75 V_4609_LC10877_Wong et al. (2007) q24.218 131229001 131483904 RP11-531O18 RP11-1292J5 3 0.254903 0.643775633 DDEF1 q24.21

12 15098075 25349131 CTD-2037H21 RP11-583L24 92 10.251056 0.821202436RERG, PTPRO, EPS8, STRAP, DERA, MGST1, LMO3, FLJ22655, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5,

FLJ32894, BCAT1, LRMP, CASC1, LYRM5, KRASV_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4770_LC13869_Wong et al. (2007), V_4772_LC13891_Wong et al. (2007),

V_4773_LC13907_Wong et al. (2007) p12.3-p12.112 26000566 26380314 RP11-48I4 RP11-360E24 4 0.379748 0.4996513 RASSF8, BHLHB3, SSPN, ITPR2 p12.1-p11.2312 27777653 29382885 RP11-569E5 RP11-602C4 20 1.605232 0.634956504 MRPS35, KLHDC5, PTHLH, CCDC91, MLSTD1 p11.2220 6122936 7476529 RP11-649H22 RP11-164M15 12 1.353593 0.689686412 BMP2 V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007) p12.320 10061435 12170047 RP11-34L10 CTD-2080M11 20 2.108612 0.589901527 SNAP25, MKKS, C20orf94, JAG1, BTBD3 p12.2-p12.120 14358153 16129466 RP11-280O9 RP11-684H3 17 1.771313 0.575301104 C20orf133 V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007) p12.120 39114015 39673014 RP11-126O24 RP11-469I22 5 0.558999 1.062459422 TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6 V_5138_LC19665_Wong et al. (2007) q1220 48142652 49747349 RP11-73P14 RP11-320F9 22 1.604697 0.893502838 Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175, PARD6B, BCAS4, ADNP, DPM1, MOCS3, KCNG1, NFATC2, ATP9A V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q13.13-q13.220 50050712 52530584 RP11-184L6 RP11-55L7 25 2.479872 1.775561826 ZFP64, TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4, DOK5 V_0226_LC19822_Iafrate et al. (2004), V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2

23 3046947 16375524 RP11-325L9 RP11-793P1 118 13.328577 0.703906099MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX-C, KAL1, FAM9A, FAM9B, TBL1X, GPR143, APXL, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B,

FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR V_0362_LC20686_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006) p22.33-p22.223 16741637 18082568 RP11-716A19 RP11-768A24 14 1.340931 0.695891614 CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2 p22.2-p22.1323 19476075 23454099 RP11-471E22 RP11-305M7 36 3.978024 0.564378783 SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1 p22.12-p22.11

23 24216417 39411011 RP11-573B14 RP11-814I19 137 15.194594 0.975892562PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR,

OTC, TSPAN7, MID1IP1 V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004) p22.11-p11.423 41351919 44123895 RP11-592I17 RP11-605I23 26 2.771976 0.585274627 CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2 p11.4-p11.323 44912255 46693195 RP11-643B24 RP11-101C24 15 1.78094 0.692872668 CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16 p11.323 49444577 51398129 RP11-58H17 RP11-735M8 15 1.953552 0.604662565 PAGE4, CLCN5, AKAP4, CCNB3, DGKK, SHROOM4, BMP15, NUDT10, LOC340602, NUDT11 p11.23-p11.2223 121497861 122559278 RP11-779A15 RP11-475E17 9 1.061417 0.624804811 GRIA3 V_0252_LC21078_Iafrate et al. (2004) q2523 123227286 124191731 CTD-2090H17 RP11-632D3 22 0.964445 0.684513631 SH2D1A, ODZ1 q2523 124353083 124816236 RP11-271O13 RP11-638C13 4 0.463153 0.498492602 q2523 125879174 128390576 RP11-656M17 RP11-309O22 18 2.511402 0.604906818 ACTRT1 q2523 129419519 131831033 RP11-657G1 RP11-375I10 21 2.411514 0.713922992 COVA1, FLJ30058, IGSF1, OR13H1, MST4, LOC90167, RAP2C, MBNL3, HS6ST2 q25-q26.2

23 133936982 136451963 RP11-15L15 RP11-697E24 23 2.514981 0.59090876 FAM127C, FAM127A, FAM127B, CXorf48, ZNF75, ZNF449, DDX26B, CT45-1, CT45-2, CT45-3, CT45-4, CT45-5, CT45-6, SAGE1, TMEM32, SLC9A6, FHL1, GPR112, BRS3, HTATSF1, VGLL1, CD40LG, ARHGEF6, RBMX, GPR101V_0254_LC21120_Iafrate et al. (2004), V_0826_LC21120_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2280_LC21120_Locke et al. (2006),

V_2281_LC21120_Locke et al. (2006) q26.323 137291937 138587277 RP11-65G20 RP11-1144I12 10 1.29534 0.586501572 FGF13, F9, MCF2 q26.3-q27.123 142324612 147972306 RP11-131B17 RP11-202E19 56 5.647694 0.711898576 SPANX-N3, SLITRK4, SPANX-N2, UBE2NL, SPANXN1, SLITRK2, CXorf1, FMR1, FMR1NB, AFF2 q27.3-q28




HCH1

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 14771742 15265864 RP11-554C10 RP11-408B19 6 0.494122 0.437213531 KIAA1026 p36.211 16168110 16680777 RP11-411G18 RP11-219J7 4 0.512667 0.300544457 ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, C1orf117, EPHA2, ARHGEF19, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2 V_4207_LC0177_Wong et al. (2007) p36.131 49434001 51048083 RP11-421N22 RP11-670L5 14 1.614082 0.439015753 ELAVL4, FAF1 p331 55284332 62308102 RP11-109I2 RP11-55I4 65 7.02377 0.654505579 PCSK9, FLJ45337, PPAP2B, PRKAA2, C1orf168, C8A, C8B, DAB1, OMA1, TACSTD2, JUN, FLJ10986, HOOK1, CYP2J2, C1orf87, NFIA, TM2D1, INADL V_0008_LC0405_Iafrate et al. (2004), V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007) p32.3-p31.3

1 62669888 72711159 RP11-293K19 RP11-634D10 89 10.041271 0.939315915USP1, DOCK7, ANGPTL3, ATG4C, FOXD3, ALG6, ITGB3BP, KIAA1799, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, AK3L2, DNAJC6, LEPR, LEPROT, PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A,

GNG12, DIRAS3, GPR177, RPE65, DEPDC1, LRRC7, LRRC40, SFRS11, ANKRD13C, HHLA3, CTH, PTGER3, ZNF265, NEGR1 V_0009_LC0463_Iafrate et al. (2004), V_4229_LC0493_Wong et al. (2007) p31.3-p31.11 147066269 147192890 RP11-761K20 RP11-806H3 4 0.126621 0.569171781 q21.1

1 148099981 150059917 RP11-793H3 RP11-505C18 21 1.959936 0.507861969

HIST2H2BE, HIST2H2AC, HIST2H2AB, BOLA1, SV2A, SF3B4, MTMR11, OTUD7B, VPS45A, PLEKHO1, ANP32E, CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, KIAA0460, TARSL1, ECM1, ADAMTSL4, MCL1, ENSA, GOLPH3L, HORMAD1, CTSS, CTSK, ARNT, SETDB1, LASS2, ANXA9, FAM63A, PRUNE, BNIPL, C1orf56, CDC42SE1, MLLT11, MGC29891, SEMA6C, TNFAIP8L2, LYSMD1, SCNM1, TMOD4, VPS72, PIP5K1A, PSMD4, ZNF687, PIK4CB, RFX5, SELENBP1, PSMB4, POGZ, CGN, TUFT1, SNX27, TNRC4, MRPL9, OAZ3, TDRKH,

LINGO4, RORC V_2052_LC0752_Locke et al. (2006) q21.2-q21.31 151991643 152693409 RP11-759F5 RP11-749D14 8 0.701766 0.292288079 INTS3, SLC27A3, GATAD2B, CRTC2, SLC39A1, CREB3L4, JTB, RAB13, RPS27, NUP210L, TPM3, C1orf189, C1orf43, UBAP2L, HAX1, AQP10, ATP8B2, IL6R q21.3

1 153344354 154412236 RP11-459O3 RP11-702H12 12 1.067882 0.393997347EFNA1, RAG1AP1, DPM3, KRTCAP2, TRIM46, MUC1, THBS3, MTX1, GBA, C1orf2, SCAMP3, CLK2, HCN3, PKLR, FDPS, C1orf104, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, SSR2, UBQLN4, MAPBPIP, RAB25, LMNA,

SEMA4A V_4257_LC0831_Wong et al. (2007) q221 155539223 156112222 CTD-2012D8 RP11-815P20 7 0.572999 0.489263293 FCRL5, FCRL4, FCRL3, FCRL2, FCRL1, CD5L q23.11 156644879 157370850 RP11-693A3 RP11-670P22 7 0.725971 0.537609179 OR10K2, OR10K1, OR10R2, OR6Y1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, IFI16, AIM2 q23.1-q23.21 159669654 163862146 RP11-488K1 RP11-606E15 40 4.192492 0.582801381 FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2, DUSP12, ATF6, OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52 V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007) q23.3-q24.11 166445799 169187589 RP11-692N22 RP11-165A8 37 2.74179 0.490586447 SFT2D2, TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BLZF1, C1orf114, SLC19A2, F5, SELP, SELL, SELE, C1orf156, C1orf112, SCYL3, KIFAP3, SCYL1BP1, PRRX1, C1orf129 V_4261_LC0907_Wong et al. (2007) q24.2-q24.31 170069073 171187941 RP11-398I12 RP11-157E7 9 1.118868 0.581485662 DNM3, C1orf105, PIGC, C1orf9, FASLG q24.3

1 178261110 198105817 RP11-656N11 RP11-115O14 163 19.844707 0.896252695

CEP350, QSCN6, LHX4, ACBD6, XPR1, STX6, MR1, IER5, CACNA1E, ZNF648, GLUL, TEDDM1, RNASEL, RGS16, RGS8, NPL, DHX9, C1orf14, LAMC1, LAMC2, NMNAT2, SMG7, NCF2, ARPC5, RGL1, APOBEC4, GLT25D2, C1orf19, C1orf21, C1orf22, C1orf24, RNF2, C1orf25, C1orf26, IVNS1ABP, HMCN1, PRG4, TPR, C1orf27, OCLM, PDC, PTGS2, PLA2G4A, C1orf99, FAM5C, RGS18, RGS21, RGS1, RGS13, RGS2, UCHL5, TROVE2, GLRX2, CDC73, B3GALT2, KCNT2, CFH, CFHR3, CFHR1, CFHR4, CFHR2, CFHR5, F13B, ASPM, ZBTB41, CRB1,

FLJ20054, DENND1B, C1orf53, LHX9, NEK7, ATP6V1G3, PTPRCV_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al.

(2006), V_4264_LC0975_Wong et al. (2007), V_4265_LC0992_Wong et al. (2007), V_4266_LC1019_Wong et al. (2007) q25.2-q32.12 41662 696156 CTD-2379H9 RP11-354J21 7 0.654494 0.509255352 SH3YL1, ACP1, LOC285016, TMEM18 p25.32 3329896 10104887 RP11-565M18 RP11-686G9 56 6.774991 0.703010708 TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC, SOX11, FLJ41046, LOC129607, RSAD2, RNF144, ID2, KIDINS220, OACT2, DDEF2, ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11 V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007) p25.3-p25.12 11947820 14578508 RP11-489A14 RP11-231J10 21 2.630688 0.681686873 TRIB2 p25.1-p24.32 15175256 15726860 RP11-619O15 RP11-422A6 5 0.551604 0.598348632 NAG, DDX1 p24.32 16256064 23236587 RP11-701O10 RP11-102J24 64 6.980523 0.776163575 FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3, GDF7, C2orf43, APOB V_4275_LC1625_Wong et al. (2007) p24.3-p24.1

2 34472432 36670315 RP11-764P18 CTD-2019E22 25 2.197883 0.772754338 CRIM1, FEZ2V_0018_LC1749_Iafrate et al. (2004), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et al.

(2007) p22.3-p22.22 39690526 42036971 RP11-288L6 RP11-44F22 17 2.346445 0.716776753 MGC33926, THUMPD2, SLC8A1 p22.1-p212 44433254 44880932 RP11-764D2 RP11-111K7 4 0.447678 0.532872105 PREPL, C2orf34 V_4283_LC1814_Wong et al. (2007) p212 45282682 45695360 RP11-346E19 RP11-478H15 3 0.412678 0.535421237 FLJ10379 p212 46287884 46591228 RP11-125F15 RP11-749C14 3 0.303344 0.669881059 EPAS1 p212 48903347 60539678 RP11-413F4 RP11-137E3 106 11.636331 0.749794731 FSHR, NRXN1, ASB3, CHAC2, C2orf30, GPR75, PSME4, ACYP2, TSPYL6, FLJ40298, SPTBN1, RTN4, FLJ31438, RPS27A, MTIF2, LOC344405, KIAA1212, CCDC104, SMEK2, PNPT1, EFEMP1, CCDC85A, VRK2, FANCL, BCL11A V_4285_LC1867_Wong et al. (2007), V_4286_LC1888_Wong et al. (2007) p16.3-p16.12 62869370 64392669 RP11-527J2 RP11-207O24 17 1.523299 0.610651274 EHBP1, OTX1, LOC51057, MDH1, UGP2, VPS54, PELI1 V_4288_LC1904_Wong et al. (2007) p15-p142 65806171 69741847 RP11-72G10 RP11-538A19 40 3.935676 0.697554903 FLJ16124, MEIS1, ETAA16, C1D, LOC116143, LOC56902, PPP3R1, C2orf32, PLEK, LOC554251, C2orf13, PROKR1, ARHGAP25, BMP10, GDDR, GKN1, ANTXR1, GFPT1, HIRIP5, DKFZp686K161, AAK1 p142 74988527 80228525 RP11-15G4 RP11-543B23 51 5.239998 0.735571436 POLE4, TACR1, FLJ13391, MRPL19, C2orf3, LRRTM4, REG3G, REG1B, REG1A, REG3A, CTNNA2 V_4289_LC1968_Wong et al. (2007) p13.1-p122 81127914 85038515 RP11-282I7 RP11-600J5 36 3.910601 0.858886942 LOC388965, SUCLG1, FLJ37357, TMSB10 V_0020_LC1992_Iafrate et al. (2004) p12-p11.2

2 89304385 91390314 RP11-631O12 RP11-205B4 15 2.085929 0.656514252V_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_4296_LC2046_Wong et al. (2007), V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al.

(2007), V_0373_LC2046_Bejjani et al. (2005) p11.2-p11.12 102065945 105023048 RP11-445H21 RP11-574D15 22 2.957103 0.902276828 IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294, POU3F3, MRPS9 q11.2-q12.12 106568258 107845875 RP11-789I2 RP11-58I21 12 1.277617 0.850633728 ST6GAL2 V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp et al. (2005) q12.2-q12.32 114036666 120842934 RP11-702P7 RP11-438O12 70 6.806268 0.969359861 RABL2A, SLC35F5, ACTR3, DPP10, DDX18, FLJ10996, INSIG2, EN1, MARCO, C1QL2, STEAP3, LOC130355, DBI, TMEM37, SCTR, MGC33657, MGC10993, PTPN4, EPB41L5, RALB, INHBB V_4304_LC2184_Wong et al. (2007) q14.1-q14.22 122466219 126983540 CTD-2022K6 RP11-2M10 36 4.517321 1.040407904 CNTNAP5 q14.3

2 137799234 165725147 RP11-291P1 RP11-640F17 271 27.925913 0.873533833

THSD7B, HNMT, LOC339745, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZFHX1B, ACVR2A, ORC4L, MBD5, EPC2, KIF5C, LOC130576, MGC52057, C2orf25, RND3, FLJ45645, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, ARL6IP6, RPRM, GALNT13, KCNJ3, NR4A2, GPD2, GALNT5, KIAA1189, PSCDBP, ACVR1C, ACVR1, UPP2, LOC130940, PKP4, LOC92196, TANC1, WDSUB1, BAZ2B, CD302, LY75, PLA2R1, ITGB6, RBMS1, TANK, PSMD14, TBR1, SLC4A10, DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN, GRB14, COBLL1,

FLJ39822, SCN3AV_4309_LC2319_Wong et al. (2007), V_4310_LC2333_Wong et al. (2007), V_4311_LC2333_Wong et al. (2007), V_4312_LC2343_Wong et al. (2007), V_4313_LC2352_Wong et al.

(2007), V_4314_LC2392_Wong et al. (2007), V_4315_LC2398_Wong et al. (2007), V_4316_LC2400_Wong et al. (2007) q22.1-q24.32 166223226 171273239 RP11-603P3 RP11-81F17 40 5.050013 0.762193646 TAIP-2, GALNT3, TTC21B, SCN1A, SCN9A, SCN7A, CMYA3, B3GALT1, STK39, LASS6, NOSTRIN, SPBC25, G6PC2, ABCB11, DHRS9, LRP2, BBS5, KBTBD10, FLJ21901, PPIG, PHOSPHO2, KLHL23, SSB, METTL5, ZNF650, MYO3B V_0027_LC2428_Iafrate et al. (2004), V_4317_LC2405_Wong et al. (2007), V_4318_LC2416_Wong et al. (2007) q24.3-q31.12 172875781 174919347 RP11-1E20 RP11-451F14 18 2.043566 0.65504757 ITGA6, PDK1, RAPGEF4, ZAK, CDCA7, SP3, PTD004, FLJ46347 V_0028_LC2438_Iafrate et al. (2004) q31.12 177058947 178415570 RP11-324L17 RP11-100I14 13 1.356623 0.736793846 HNRPA3, NFE2L2, AGPS, TTC30B, TTC30A, PDE11A q31.1-q31.2

2 178887319 199282002 RP11-166L8 RP11-205N8 178 20.394683 0.867141117

OSBPL6, PRKRA, DFNB59, FKBP7, PLEKHA3, TTN, FLJ39502, SESTD1, ZNF533, KIAA1604, UBE2E3, ITGA4, CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, C2orf10, FSIP2, FLJ44048, ZC3H15, ITGAV, KIAA1946, ZSWIM2, CALCRL, TFPI, GULP1, DIRC1, COL3A1, COL5A2, WDR75, SLC40A1, ASNSD1, FLJ25415, OSGEPL1, ORMDL1, PMS1, GDF8, MGC13057, HIBCH, INPP1, FLJ20160, NAB1, GLS, STAT1, STAT4, MYO1B, OBFC2A, SDPR, TMEFF2, SLC39A10, DNAH7, STK17B, HECW2,

FLJ39660, GTF3C3, UNQ6411, PGAP1, ANKRD44, SF3B1, COQ10B, HSPD1, HSPE1, PREI3, C2orf11, MARS2, BOLL, PLCL1V_0029_LC2519_Iafrate et al. (2004), V_4319_LC2466_Wong et al. (2007), V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007), V_4322_LC2517_Wong et al.

(2007), V_4323_LC2558_Wong et al. (2007) q31.2-q33.1

2 201277110 204021483 RP11-663N2 RP11-320B20 25 2.744373 0.611549766BZW1, CLK1, PPIL3, NIF3L1, ORC2L, FAM126B, NDUFB3, CFLAR, CASP10, CASP8, ALS2CR12, TRAK2, ALS2CR2, ALS2CR11, ALS2CR4, MPP4, ALS2, ALS2CR7, FZD7, FLJ39061, SUMO1, NOP5/NOP58, BMPR2, ALS2CR13, ICA1L, WDR12, ALS2CR8, CYP20A1, ABI2,

RAPH1 q33.1-q33.2

3 11390415 16290798 RP11-604C14 RP11-713B22 39 4.900383 0.898932149ATG7, VGLL4, C3orf31, SYN2, TIMP4, PPARG, TSEN2, MKRN2, RAF1, TMEM40, CAND2, RPL32, IQSEC1, NUP210, HDAC11, FBLN2, WNT7A, CHCHD4, TMEM43, XPC, LSM3, SLC6A6, GRIP2, C3orf19, C3orf20, FGD5, NR2C2, MRPS25, ZFYVE20, CAPN7, SH3BP5, METTL6,

EAF1, COLQ, PHYH2, BTD, ANKRD28, GALNTL2, ZCSL2, OXNAD1 p25.3-p24.33 19465901 20327328 RP11-641E6 RP11-338N24 9 0.861427 0.414228999 KCNH8, EFHB, RAB5A, C3orf48, PCAF, SGOL1 p24.33 23405015 24092195 RP11-316D6 RP11-158K4 6 0.68718 0.538290842 UBE2E2, UBE2E1, NKIRAS1, RPL15, NR1D2 p24.3-p24.23 24592470 31657151 RP11-434O3 RP11-356I4 69 7.064681 0.619744048 RARB, TOP2B, NGLY1, OXSM, LRRC3B, NEK10, SLC4A7, EOMES, MGC61571, AZI2, ZCWPW2, RBMS3, TGFBR2, GADL1, STT3B p24.2-p233 34281895 36294404 RP11-151D3 RP11-637N22 35 2.012509 0.437441851 ARPP-21 p22.33 53287752 56505741 RP11-557M5 RP11-326J12 22 3.217989 0.315592992 DCP1A, CACNA1D, CHDH, IL17RB, ACTR8, SELK, CACNA2D3, LRTM1, WNT5A, CAST1 p21.1-p14.33 58517748 64225944 RP11-475O23 RP11-159M8 52 5.708196 0.474468515 FAM107A, FAM3D, FLJ42117, FHIT, PTPRG, C3orf14, ZNF312, CADPS, SYNPR, FLJ44379, THOC7, ATXN7, PSMD6, PRICKLE2 p14.2-p14.1

3 64727183 123942668 RP11-589G4 CTD-2016B20 536 59.215485 1.147059587

CHMP2B, POU1F1, HTR1F, CGGBP1, ZNF654, C3orf38, EPHA3, PROS1, ARL13B, STX19, DHFRL1, NSUN3, EPHA6, ARL6, DKFZp667G211, MINA, OR5AC2, OR5H1, OR5H14, OR5H15, OR5H6, OR5H2, OR5K4, OR5K3, OR5K1, OR5K2, CLDND1, GPR15, CPOX, ST3GAL6, DCBLD2, COL8A1, FLJ44076, C3orf26, DOC1, TBC1D23, NIT2, TOMM70A, TMEM45A, GPR128, TFG, ABI3BP, IMPG2, SENP7, RG9MTD1, PCNP, ZBTB11, RPL24, LRRIQ2, FAM55C, NFKBIZ, ZPLD1, ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, KIAA1524, DZIP3,

RETNLB, TRAT1, GUCA1C, MORC1, DPPA2, DPPA4, PVRL3, CD96, ZBED2, PLCXD2, PHLDB2, ABHD10, TAGLN3, TMPRSS7, C3orf52, GCET2, SLC9A10, CD200, BTLA, ATG3, SLC35A5, URB, CD200R2, CD200R1, GTPBP8, C3orf17, BOC, WDR52, CCDC52, SIDT1, KIAA2018, MAK3, ATP6V1A, GRAMD1C, ZDHHC23, KIAA1407, QTRTD1, DRD3, ZNF80, VSIG9, ZBTB20, GAP43, LSAMP, IGSF11, C3orf30, UPK1B, B4GALT4, CDGAP, TMEM39A, C3orf9, C3orf1, CD80, ADPRH, PLA1A, POPDC2, COX17, C3orf15, NR1I2, GSK3B, GPR156, FSTL1,

NDUFB4, HGD, RABL3, GTF2E1, POLQ, ARGFX, FBXO40, HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58

V_0035_LC3553_Iafrate et al. (2004), V_0695_LC3383_Sharp et al. (2005), V_2061_LC3320_Locke et al. (2006), V_4340_LC3314_Wong et al. (2007), V_4341_LC3320_Wong et al. (2007), V_4342_LC3338_Wong et al. (2007), V_4343_LC3365_Wong et al. (2007), V_4344_LC3397_Wong et al. (2007), V_4345_LC3405_Wong et al. (2007), V_4346_LC3406_Wong et al. (2007), V_4347_LC3406_Wong et al. (2007), V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007), V_4350_LC3509_Wong et al. (2007), V_4351_LC3524_Wong

et al. (2007) p14.1-q21.13 131340131 134606591 RP11-687B8 RP11-542F6 24 3.26646 0.700942319 FLJ35880, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBE1DC1, NPHP3, TMEM108, BFSP2 V_4353_LC3617_Wong et al. (2007), V_4354_LC3619_Wong et al. (2007) q21.3-q22.1

3 144336827 184625155 RP11-745O22 RP11-752G21 386 40.288328 1.098765394

SLC9A9, C3orf58, PLOD2, PLSCR4, PLSCR2, PLSCR1, ZIC4, ZIC1, AGTR1, CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2, TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ,

SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L, B3GALT3, NMD3, C3orf57, LOC131149, SI, SLITRK3, BCHE, FLJ23049, SERPINI2, WDR49, PDCD10, SERPINI1, GOLPH4, EVI1, MDS1, ARPM1, MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B, GHSR, TNFSF10, AADACL1, ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1, KCNMB2, WIG1, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, TTC14,

FXR1, DNAJC19, SOX2, ATP11B, DCUN1D1, MCCC1, LAMP3, MCF2L2, B3GNT5

V_0037_LC3745_Iafrate et al. (2004), V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_0040_LC3895_Iafrate et al. (2004), V_4355_LC3723_Wong et al. (2007), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007), V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et

al. (2007), V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007), V_4363_LC3872_Wong et al. (2007) q23-q27.13 188977637 194489699 RP11-30O15 RP11-615G2 54 5.512062 0.624209072 LPP, FAM79B, TP73L, LEPREL1, CLDN1, CLDN16, UNQ846, IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12, C3orf59, HRASLS, ATP13A5 V_2062_LC4004_Locke et al. (2006) q27.3-q29

4 92089713 127437920 RP11-349I14 CTD-2150K13 251 35.348207 0.637783494

GRID2, ATOH1, SMARCAD1, PGDS, PDLIM5, BMPR1B, UNC5C, PDHA2, MGC46496, RAP1GDS1, TSPAN5, EIF4E, METAP1, ADH5, ADH4, ADH6, ADH1A, ADH1B, ADH1C, ADH7, C4orf17, RG9MTD2, MTTP, DAPP1, MAP2K1IP1, DNAJB14, H2AFZ, DDIT4L, EMCN, PPP3CA, BANK1, SLC39A8, NFKB1, MANBA, UBE2D3, LOC493856, LOC150159, LOC133308, BDH2, CENPE, TACR3, CXXC4, KIAA1546, PPA2, FLJ20184, INTS12, FLJ13273, NPNT, MGC16169, SCYE1, DKK2, PAPSS1, SGMS2, CYP2U1, HADHSC, LEF1, RPL34, DC2, AGXT2L1,

COL25A1, SEC24B, FLJ20647, CASP6, PLA2G12A, CFI, NOLA1, RRH, FLJ44691, EGF, ELOVL6, ENPEP, PITX2, FLJ39370, C4orf16, TIFA, ALPK1, NEUROG2, LOC91431, FLJ11331, HDCMA18P, ANK2, CAMK2D, ARSJ, UGT8, NDST4, TRAM1L1, NDST3, PRSS12, KIAA1627, SEC24D, SYNPO2, MYOZ2, USP53, LOC401152, FABP2, PDE5A, MAD2L1, PRDM5, FLJ23191, TNIP3, GPR103, ANXA5, TMEM155, EXOSC9, CCNA2, BBS7, TRPC3, Tenr, IL2, IL21, FLJ35630, FGF2, NUDT6, SPATA5, SPRY1, ANKRD50, FAT4

V_0048_LC5301_Iafrate et al. (2004), V_0049_LC5396_Iafrate et al. (2004), V_0050_LC5522_Iafrate et al. (2004), V_4406_LC5192_Wong et al. (2007), V_4407_LC5203_Wong et al. (2007), V_4408_LC5273_Wong et al. (2007), V_4409_LC5332_Wong et al. (2007), V_4411_LC5470_Wong et al. (2007), V_4587_LC5465_Wong et al. (2007) q22.1-q28.1

4 136926277 139941485 RP11-60K19 CTD-2037B12 20 3.015208 0.584664997 PCDH18, SLC7A11 V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007) q28.3-q31.14 141744144 145639725 RP11-495M18 RP11-605B12 50 3.895581 0.70670104 TBC1D9, RNF150, ZNF330, IL15, INPP4B, USP38, GAB1, SMARCA5, LOC441046, GYPE, GYPB, GYPA V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4419_LC5731_Wong et al. (2007) q31.21-q31.224 149340162 151865853 RP11-148P11 RP11-173A1 18 2.525691 0.487141598 NR3C2, DCAMKL2, LRBA, MAB21L2 q31.23-q31.34 156885891 159231813 RP11-683H8 RP11-423E20 19 2.345922 0.553149063 GUCY1B3, ACCN5, TDO2, CTSO, PDGFC, GLRB, GRIA2 q32.14 162539460 165772937 RP11-119H13 RP11-521O15 18 3.233477 0.728242663 FSTL5, LOC92345, NPY1R, NPY5R, TKTL2, FLJ11184, ANP32C V_0053_LC5929_Iafrate et al. (2004) q32.2-q32.3

4 166331197 183932473 RP11-630K1 RP11-384D13 145 17.601276 0.591255951FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1, HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4,

ASB5, SPCS3, VEGFC, NEIL3, AGA, ODZ3 V_0054_LC6039_Iafrate et al. (2004), V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007) q32.3-q35.14 186457935 187164185 RP11-714G18 RP11-751E4 7 0.70625 0.415879486 SNX25, LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2 q35.15 16593113 17494085 RP11-743N11 RP11-546A19 16 0.900972 0.774925508 FLJ20152, MYO10, BASP1 V_0061_LC6634_Iafrate et al. (2004), V_4431_LC6634_Wong et al. (2007) p15.1

5 21248643 21607723 RP11-742H1 RP11-524H13 3 0.35908 0.386160169V_0709_LC6669_Sharp et al. (2005), V_2083_LC6669_Locke et al. (2006), V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_4435_LC6669_Wong et al.

(2007), V_4436_LC6669_Wong et al. (2007) p14.35 21907045 22443489 RP11-631P2 RP11-402L24 5 0.536444 0.539548082 CDH12 p14.35 43022413 44027614 RP11-620E16 RP11-565O2 9 1.005201 0.776610239 LOC389289, ZNF131, MGC42105, HMGCS1, CCL28, FLJ21657, FLJ32363, PAIP1, NNT V_4441_LC6869_Wong et al. (2007) p125 52120289 52743515 RP11-730O15 RP11-479L18 8 0.623226 0.547669139 PELO, ITGA1, ITGA2, MOCS2 q11.25 54724410 55623134 CTD-2315M5 RP11-253J16 16 0.898724 0.415737556 SKIV2L2, PPAP2A, FLJ90709, DDX4, IL31RA, IL6ST, FLJ11795 V_4445_LC6923_Wong et al. (2007) q11.25 131806486 132238302 RP11-500D21 RP11-252D24 3 0.431816 0.876852162 LOC441108, IRF1, IL5, RAD50, IL13, IL4, KIF3A, FLJ16793, ANKRD43, APXL2, GDF9, UQCRQ, LEAP-2 q31.15 132599159 133318206 RP11-562N18 RP11-378P20 7 0.719047 0.32927056 FSTL4 q31.15 134312306 137402473 RP11-757O10 RP11-481K6 63 3.090167 0.731752105 PCBD2, CATSPER3, PITX1, H2AFY, C5orf20, NEUROG1, CXCL14, LOC153328, IL9, FBXL21, LECT2, TGFBI, SMAD5, TRPC7, SPOCK1, KLHL3, HNRPA0, MYOT, PKD2L2, C5orf5 V_4479_LC7555_Wong et al. (2007) q31.1-q31.2

5 142315631 148581129 CTD-2024C20 RP11-19G16 76 6.265498 0.555242282ARHGAP26, NR3C1, HB-1, YIPF5, KCTD16, MGC21644, LOC643226, SH3RF2, PLAC8L1, LARS, POU4F3, TCERG1, GPR151, PPP2R2B, STK32A, DPYSL3, JAKMIP2, SPINK1, SCGB3A2, MGC23985, SPINK5, SPINK5L2, SPINK6, SPINK5L3, SPINK7, SPINK9, FBXO38, HTR4,

ADRB2, SH3TC2, ABLIM3 q31.3-q33.1

5 154230640 167388849 RP11-653K21 RP11-103J9 122 13.158209 0.771539152CNOT8, GEMIN5, MRPL22, SGCD, TIMD4, HAVCR1, HAVCR2, CRSP9, FAM71B, ITK, CYFIP2, MGC27121, ADAM19, SOX30, ICF45, LSM11, ENTH, EBF, FLJ31951, UBLCP1, IL12B, ADRA1B, TTC1, FABP6, CCNJL, C1QTNF2, LOC63920, SLU7, PTTG1, GABRB2, GABRA6,

GABRA1, GABRG2, CCNG1, NUDCD2, HMMR, MAT2B, ODZ2 q33.2-q346 1108044 2815840 RP11-16N9 RP11-420G6 14 1.707796 0.34415869 FOXQ1, FOXF2, FOXC1, GMDS, C6orf195, LOC340156, WRNIP1, SERPINB1 V_4484_LC7948_Wong et al. (2007) p25.3-p25.26 8147452 10011623 RP11-438E10 RP11-211P3 29 1.864171 0.398589281 SLC35B3, OFCC1 p24.36 11164609 13419038 RP11-692B12 RP11-297P5 30 2.254429 0.478198944 HERV-FRD, NEDD9, C6orf105, HIVEP1, EDN1, PHACTR1, TBC1D7 p24.2-p24.16 13623365 14458529 RP11-165E20 RP11-387L6 7 0.835164 0.516973902 SIRT5, NOL7, RANBP9, C6orf79, RNF182, CD83 p236 18571387 20240335 RP11-240J23 RP11-345F7 21 1.668948 0.400471372 IBRDC2, ID4, MBOAT1 V_5038_LC8092_Wong et al. (2007) p22.36 22293196 24572982 RP11-638C3 RP11-393N1 20 2.279786 0.481790881 PRL, HDGFL1, NRSN1, DCDC2, KAAG1, MRS2L, GPLD1 V_4487_LC8122_Wong et al. (2007) p22.3-p22.26 25147353 25982188 CTD-2105C9 RP11-681A10 11 0.834835 0.362550817 LRRC16, SCGN, HIST1H2AA, HIST1H2BA, SLC17A4, SLC17A1, SLC17A3 V_4488_LC8136_Wong et al. (2007) p22.26 44968364 46734973 RP11-225K16 RP11-148L13 23 1.766609 0.432792402 SUPT3H, RUNX2, CLIC5, ENPP4, ENPP5, DSCR1L1, CYP39A1, SLC25A27 V_0078_LC8319_Iafrate et al. (2004) p21.1-p12.3

6 47162744 73844143 RP11-758B6 RP11-138M5 229 26.681399 0.557855913

TNFRSF21, CD2AP, GPR111, GPR115, OPN5, LOC442213, FLJ41841, MUT, C6orf139, RHAG, CRISP2, CRISP3, PGK2, CRISP1, DEFB114, DEFB113, DEFB110, DEFB111, DEFB112, TFAP2D, TFAP2B, PKHD1, IL17, IL17F, MCM3, PAQR8, EFHC1, TRAM2, TMEM14A, GSTA2, GSTA1, GSTA5, GSTA3, GSTA4, ICK, FBXO9, GCM1, ELOVL5, GCLC, KLHL31, LRRC1, C6orf142, TINAG, C6orf143, HCRTR2, UNQ9356, HMGCLL1, BMP5, COL21A1, DST, C6orf65, KIAA1586, ZNF451, BAG2, RAB23, PRIM2A, GUSBL2, KHDRBS2, GLULD1, PTP4A1, PHF3,

LOC643136, EGFL11, BAI3, LMBRD1, COL19A1, COL9A1, KIAA1411, C6orf57, SMAP1, B3GAT2, OGFRL1, RIMS1, KCNQ5

V_0080_LC8417_Iafrate et al. (2004), V_0081_LC8420_Iafrate et al. (2004), V_0082_LC8431_Iafrate et al. (2004), V_0083_LC8439_Iafrate et al. (2004), V_0086_LC8475_Iafrate et al. (2004), V_0087_LC8488_Iafrate et al. (2004), V_0360_LC8473_Shaw-Smith et al. (2004), V_0718_LC8331_Sharp et al. (2005), V_4494_LC8335_Wong et al. (2007),

V_4495_LC8337_Wong et al. (2007), V_4496_LC8416_Wong et al. (2007), V_4497_LC8475_Wong et al. (2007) p12.3-q136 74483212 80051597 RP11-796M21 RP11-798M24 59 5.568385 0.470633092 CD109, COL12A1, COX7A2, TMEM30A, FILIP1, SENP6, MYO6, IMPG1, HTR1B, IRAK1BP1, PHIP, HMGN3 V_4498_LC8515_Wong et al. (2007) q13-q14.16 80720248 86041349 RP11-640P24 RP11-555E2 59 5.321101 0.378917716 TTK, BCKDHB, FAM46A, IBTK, TPBG, C6orf157, DOPEY1, PGM3, RWDD2, ME1, PRSS35, SNAP91, C6orf159, CYB5R4, C6orf117, C6orf84, TBX18 V_4499_LC8546_Wong et al. (2007) q14.1-q14.36 91116002 106179768 RP11-542E3 RP11-705E4 137 15.063766 0.500051396 MAP3K7, EPHA7, MANEA, FUT9, KIAA0776, FHL5, GPR63, C6orf66, KLHL32, C6orf167, POU3F2, FBXL4, C6orf168, COQ3, C6orf111, USP45, CCNC, PRDM13, MCHR2, SIM1, ASCC3, GRIK2, HACE1, LIN28B, BVES, POPDC3, PREP V_4501_LC8583_Wong et al. (2007), V_4502_LC8592_Wong et al. (2007), V_4503_LC8644_Wong et al. (2007) q15-q216 112991590 118969157 RP11-167C24 RP11-5M22 51 5.977567 0.424131767 MARCKS, FLJ34503, HDAC2, HS3ST5, FRK, NT5DC1, COL10A1, TSPYL4, TSPYL1, DSE, LOC441168, C6orf188, C6orf78, RWDD1, RSHL3, C6orf113, KPNA5, GPRC6A, RFXDC1, VGLL2, ROS1, DCBLD1, GOPC, C6orf68, SLC35F1, C6orf204 V_4506_LC8686_Wong et al. (2007) q21-q22.316 119465178 122952161 RP11-619M5 RP11-119P24 34 3.486983 0.515205587 MAN1A1, C6orf170, GJA1, HSF2, SERINC1 q22.31

6 123537458 135474658 RP11-480A5 RP11-349J5 111 11.9372 0.949189954TRDN, TCBA1, IBRDC1, TPD52L1, HDDC2, HEY2, NCOA7, HINT3, C6orf75, C6orf173, RSPO3, RNF146, ECHDC1, KIAA0408, C6orf174, LOC389429, C6orf190, PTPRK, LAMA2, ARHGAP18, C6orf191, L3MBTL3, SAMD3, KIAA1913, EPB41L2, AKAP7, ARG1, CRSP3, ENPP3,

OR2A4, ENPP1, CTGF, MOXD1, STX7, TAAR9, TAAR8, TAAR6, TAAR5, TAAR2, TAAR1, VNN1, VNN3, VNN2, C6orf192, RPS12, LOC285735, EYA4, TCF21, TBPL1, SLC2A12, SGK, ALDH8A1, HBS1L V_0090_LC8741_Iafrate et al. (2004), V_0091_LC8757_Iafrate et al. (2004), V_4507_LC8786_Wong et al. (2007), V_4508_LC8791_Wong et al. (2007) q22.31-q23.3

6 135602776 149469033 RP11-170P19 RP11-162J8 142 13.866257 0.63330085AHI1, PDE7B, FAM54A, BCLAF1, MAP7, MAP3K5, PEX7, SLC35D3, IL20RA, IL22RA2, IFNGR1, OLIG3, TNFAIP3, PERP, KIAA1244, PBOV1, HEBP2, CCDC28A, LFDH, REPS1, HECA, TXLNB, CITED2, NMBR, C6orf55, GPR126, HIVEP2, AIG1, DEADC1, PEX3, FUCA2, PHACTR2,

LTV1, PLAGL1, SF3B5, STX11, UTRN, EPM2A, FLJ44955, FBXO30, SHPRH, GRM1, RAB32, STXBP5, LOC389432, SASH1, UST V_0092_LC8865_Iafrate et al. (2004), V_4509_LC8851_Wong et al. (2007), V_4510_LC8882_Wong et al. (2007) q23.3-q25.16 152743974 154225523 RP11-148O17 RP11-689M23 17 1.481549 0.339459319 SYNE1, MYCT1, VIP, FBXO5, MTRF1L, RGS17 q25.26 155536339 156639437 RP11-133M4 RP11-446N2 7 1.103098 0.40162924 TIAM2, TFB1M, CLDN20, NOX3 q25.2-q25.36 160694454 161296471 CTD-2009I24 RP11-99A24 6 0.602017 0.517215116 SLC22A3, LPAL2, LPA, PLG V_4514_LC8985_Wong et al. (2007) q25.3-q267 5290002 7093692 RP11-50P5 RP11-537L13 12 1.80369 0.715387287 SLC29A4, KIAA1856, FBXL18, ACTB, FSCN1, TRIAD3, C7orf28A, PMS2, JTV1, EIF2AK1, USP42, PSCD3, MGC12966, RAC1, LOC221955, KDELR2, ZDHHC4, C7orf26, ZNF12, LOC222967, C7orf28B V_4524_LC9249_Wong et al. (2007) p22.17 10793526 11238744 RP11-488D12 RP11-99J6 4 0.445218 0.464630115 NDUFA4, PHF14 p21.37 11886979 12221705 RP11-190I6 RP11-518J18 3 0.334726 0.52151483 TMEM106B p21.37 26024586 26451171 RP11-216K12 RP11-73H4 5 0.426585 0.329167062 NFE2L3, HNRPA2B1, CBX3, SNX10 p15.2

7 31388412 43911336 RP11-117E7 RP11-343J6 118 12.522924 0.721780187LOC223075, C7orf16, PDE1C, LSM5, KIAA0241, LOC441208, KBTBD2, LOC441212, FKBP9, NT5C3, RP9, PTHB1, BMPER, AAA1, GPR154, TBX20, FLJ22313, KIAA1706, KIAA0895, ANLN, AOAH, ELMO1, GPR141, TXNDC3, SFRP4, EPDR1, STARD3NL, TARP, AMPH, VPS41,

POU6F2, C7orf36, RALA, CDC2L5, C7orf11, C7orf10, INHBA, GLI3, C7orf25, PSMA2, MRPL32, HECW1, STK17A, FLJ10803, BLVRA, MRPS24, URG4 V_0719_LC9421_Sharp et al. (2005), V_4530_LC9436_Wong et al. (2007), V_4531_LC9464_Wong et al. (2007) p15.1-p137 45906121 47533548 RP11-132L11 RP11-187H11 17 1.627427 0.59913265 IGFBP3, LOC641980, TNS3 V_4534_LC9482_Wong et al. (2007) p13-p12.37 47880437 55131522 RP11-280F6 RP11-781C22 70 7.251085 0.62645371 PKD1L1, HUS1, SUNC1, UPP1, ABCA13, VWC2, ZPBP, ZNFN1A1, FIGNL1, DDC, GRB10, COBL, DKFZp564N247, FLJ45974, MGC33530, SEC61G, EGFR V_4536_LC9495_Wong et al. (2007), V_4537_LC9518_Wong et al. (2007) p12.3-p11.27 64393261 64921480 RP13-929L15 RP11-479O9 14 0.528219 0.523114034 ZNF92 V_0722_LC9554_Sharp et al. (2005), V_2101_LC9554_Locke et al. (2006) q11.217 68577116 69002427 RP11-561G6 RP11-358I11 4 0.425311 0.448729894 AUTS2 q11.22

7 76113087 97174738 RP11-398O10 RP11-312C19 208 21.061651 0.683013195

KIAA1505, FGL2, LOC54103, PTPN12, RSBN1L, TMEM60, PHTF2, MAGI2, MGC34774, GNAI1, CD36, SEMA3C, HGF, CACNA2D1, SEMA3E, SEMA3A, SEMA3D, GRM3, KIAA1324L, DMTF1, C7orf23, CROT, ABCB4, ABCB1, RPIB9, MCFP, DBF4, ADAM22, SRI, STEAP4, FLJ32110, MGC26647, STEAP1, STEAP2, FLJ21062, DKFZP686A101, CLDN12, PFTK1, FZD1, MTERF, AKAP9, CYP51A1, LOC401387, KRIT1, GATAD1, PEX1, DKFZP564O052, MGC40405, CDK6, SAMD9, SAMD9L, LOC253012, FLJ20097, CALCR, TFPI2, GNGT1, GNG11,

BET1, COL1A2, CASD1, SGCE, PEG10, PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, DYNC1I1, SLC25A13, FLJ42280, SHFM1, DLX6, DLX5, ACN9 V_0105_LC9667_Iafrate et al. (2004), V_0106_LC9682_Iafrate et al. (2004), V_0723_LC9631_Sharp et al. (2005), V_4546_LC9689_Wong et al. (2007) q11.23-q21.3

7 102251280 127564678 RP11-617P22 RP11-809F9 220 25.313398 1.057735382

FBXL13, LRRC17, SVH, NAPE-PLD, FLJ36166, PMPCB, ZRF1, PSMC2, SLC26A5, RELN, ORC5L, LHFPL3, MLL5, SRPK2, PUS7, RINT1, ATXN7L4, FLJ23834, SYPL1, PBEF1, FLJ36031, PIK3CG, PRKAR2B, HBP1, COG5, GPR22, DUS4L, BCAP29, SLC26A4, CBLL1, SLC26A3, DLD, LAMB1, LAMB4, NRCAM, IPLA2(GAMMA), THAP5, DNAJB9, LOC154907, IMMP2L, LRRN3, DOCK4, ZNF277P, IFRD1, FLJ39575, FLJ13576, FLJ31818, GPR85, PPP1R3A, FOXP2, MDFIC, TFEC, TES, CAV2, CAV1, MET, CAPZA2, ST7, WNT2, ASZ1, CFTR, CTTNBP2,

LSM8, ANKRD7, KCND2, TSPAN12, ING3, FLJ21986, WNT16, FAM3C, LOC392979, PTPRZ1, AASS, LOC389549, CADPS2, RNF133, RNF148, TAS2R16, SLC13A1, FLJ35834, NDUFA5, ASB15, WASL, HYAL4, SPAM1, LOC392982, GPR37, POT1, LOC401398, GRM8, LOC168850, GCC1, ARF5, FSCN3, PAX4, SND1, NAG8, LRRC4

V_0108_LC9826_Iafrate et al. (2004), V_4554_LC9806_Wong et al. (2007), V_4555_LC9863_Wong et al. (2007), V_4556_LC9887_Wong et al. (2007), V_4557_LC9892_Wong et al. (2007) q22.1-q32.1

7 131359614 137585341 RP11-805M23 RP11-183I20 70 6.225727 0.609507185 PLXNA4B, FLJ40288, CHCHD3, EXOC4, FLJ32786, SLC35B4, AKR1B1, AKR1B10, LOC441282, BPGM, CALD1, TMEM140, MGC5242, HSPC049, LOC346673, CNOT4, NUP205, SLC13A4, UNQ1940, MTPN, CHRM2, PTN, DGKI, CREB3L2, AKR1D1 V_4561_LC9937_Wong et al. (2007) q32.3-q34

7 140260135 142223572 RP11-447A24 CTD-2087C12 23 1.963437 0.719829625 BRAF, MRPS33, LOC401410, MULK, KIAA1147, FLJ40852, SSBP1, TAS2R3, TAS2R4, TAS2R5, LOC136242, OR9A4, CLEC5A, TAS2R38, MGAM, TRY1, PRSS1, PRSS2V_4563_LC10013_Wong et al. (2007), V_4564_LC10013_Wong et al. (2007), V_4565_LC10013_Wong et al. (2007), V_4566_LC10013_Wong et al. (2007), V_4567_LC10013_Wong et al.

(2007) q347 144056587 145632804 RP11-466N22 RP11-593N14 17 1.576217 0.408427304 TPK1, LOC402715, CNTNAP2 q357 146269316 146948420 RP11-739B3 RP11-162A9 5 0.679104 0.3131562 CNTNAP2 q358 15486761 16604425 RP11-314P10 RP11-652H24 8 1.117664 0.438414839 TUSC3, MSR1 p228 21040375 21565316 RP11-449P3 RP11-135I5 5 0.524941 0.49898009 V_2124_LC10461_Locke et al. (2006), V_2125_LC10461_Locke et al. (2006) p21.38 21827292 22089145 RP13-706N6 RP13-600L4 4 0.261853 0.520401936 XPO7, NPM2, FGF17, EPB49, RAI16, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1 V_4586_LC10461_Wong et al. (2007) p21.38 30945723 33321620 RP11-473A17 RP11-405D24 19 2.375897 0.381232763 PURG, WRN, NRG1 p128 33847201 37176230 RP11-498O19 RP11-371M15 26 3.329029 0.309568039 UNC5D, FKSG2 p128 39186740 40464496 CTD-2172C13 RP11-812C6 11 1.277756 0.406504566 ADAM32, ADAM18, ADAM2, INDO, C8orf4 p11.23-p11.218 56002437 56407692 RP11-322N15 RP11-42J12 4 0.405255 0.636734656 XKR4 q12.18 57786278 61996353 RP11-45A19 RP11-764M2 38 4.210075 0.763788927 IMPAD1, C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX, CA8, RAB2, CHD7 V_4594_LC10611_Wong et al. (2007), V_4595_LC10619_Wong et al. (2007) q12.1-q12.28 62486394 66643943 RP11-110E6 RP11-322K18 30 4.157549 0.687077074 MGC34646, ASPH, FAM77D, FLJ39198, GGH, TTPA, YTHDF3, BHLHB5, CYP7B1 V_4596_LC10633_Wong et al. (2007), V_4597_LC10634_Wong et al. (2007), V_4598_LC10640_Wong et al. (2007) q12.3-q13.1

8 68439786 94516611 RP11-252K16 RP11-674P23 219 26.076825 0.963805083

CPA6, DEPDC2, C8orf34, SULF1, SLCO5A1, PRDM14, NCOA2, TRAM1, LACTB2, XKR9, EYA1, MSC, TRPA1, KCNB2, TERF1, RPESP, RPL7, RDH10, STAU2, UBE2W, TCEB1, TMEM70, LY96, JPH1, GDAP1, PI15, CRISPLD1, HNF4G, ZFHX4, PXMP3, PKIA, C8orf70, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10, ZNF704, PAG1, FABP5, PMP2, PERF15, FABP4, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16, LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1,

WDR21C, MMP16, RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64, EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1

V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007),


8 104154317 120599104 RP11-754L23 RP11-230M9 137 16.444787 1.013687871ATP6V1C1, BAALC, FZD6, CTHRC1, SLC25A32, WDSOF1, RIMS2, TM7SF4, DPYS, LRP12, ZFPM2, OXR1, ABRA, ANGPT1, RSPO2, EIF3S6, TTC35, TMEM74, TRHR, NUDCD1, ENY2, PKHD1L1, EBAG9, FLJ20366, KCNV1, CSMD3, TRPS1, EIF3S3, C8orf53, RAD21,

LOC441376, SLC30A8, THRAP6, EXT1, SAMD12, TNFRSF11B, COLEC10, MAL2, NOV V_4608_LC10811_Wong et al. (2007) q22.3-q24.128 121290211 122781140 RP11-508I16 RP11-532K12 10 1.490929 0.489891013 COL14A1, MRPL13, MTBP, SNTB1, HAS2 q24.12-q24.138 126801789 130572529 RP11-781C3 RP11-795G17 30 3.77074 0.650562167 FAM84B, MYC, TMEM75 V_4609_LC10877_Wong et al. (2007) q24.13-q24.218 131034335 131647030 RP11-155H18 RP11-1104D13 6 0.612695 0.643775633 DDEF1 q24.21-q24.228 137364884 139063561 RP11-228K13 RP11-351F11 21 1.698677 0.744328531 q24.239 18848841 19373997 RP11-296P7 RP11-624N8 5 0.525156 0.393399646 C9orf94, C9orf138, RRAGA, FAM29A, ADFP, DENND4C, RPS6 p22.19 74277754 77905027 RP11-584F8 RP11-793O15 29 3.627273 1.12529805 TMC1, ALDH1A1, ANXA1, RORB, TRPM6, C9orf40, C9orf41, C9orf95, OSTF1, PCSK5 V_4643_LC11388_Wong et al. (2007) q21.139 80033523 90026428 RP11-83O16 RP11-345K9 94 9.992905 0.700036398 PSAT1, TLE4, TLE1, FLJ46321, RASEF, FRMD3, C9orf103, UBQLN1, GKAP1, KIF27, C9orf64, HNRPK, C9orf76, SLC28A3, NTRK2, AGTPBP1, MAK10, GOLPH2, C9orf153, HBLD2, ZCCHC6, GAS1, FLJ45537, DAPK1, CTSL1, HCTSL-s, C9orf79, CCRK V_0129_LC11470_Iafrate et al. (2004), V_4644_LC11438_Wong et al. (2007) q21.2-q22.19 90481773 91124711 RP11-204A14 RP11-8C21 7 0.642938 0.299981086 C9orf47, EDG3, SHC3, CKS2, SECISBP2 q22.1-q22.2

9 103167207 108696885 RP11-297N21 RP11-214G2 50 5.529678 0.493919621 BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FCMD, TAL2, TMEM38B, ZNF462 V_4650_LC11572_Wong et al. (2007), V_4651_LC11606_Wong et al. (2007) q31.1-q31.29 116741403 118370971 RP11-818J3 RP11-488L10 14 1.629568 0.428432207 TNC, PAPPA, ASTN2 q33.19 119669045 121070637 RP11-619F14 CTD-2015A22 12 1.401592 0.403360252 DBC1 V_4653_LC11698_Wong et al. (2007) q33.19 122305129 123326438 RP11-810A24 RP11-162D16 7 1.021309 0.37465209 CDK5RAP2, MEGF9, FBXW2, PSMD5, PHF19, TRAF1, C5, CEP110, RAB14, GSN, STOM q33.29 125320527 125712321 RP11-558L8 RP11-640N15 4 0.391794 0.35737227 DENND1A q33.2

10 4377403 5066472 RP11-441N20 RP11-195I21 5 0.689069 0.736704781 AKR1CL2, AKR1C1, AKR1C2 p15.110 7871129 11592050 RP11-309D20 RP11-48A13 29 3.720921 0.546748203 ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2, USP6NL p1410 51600757 64013484 RP11-811L2 RP11-496C12 117 12.412727 0.72879309 ASAH2, TMEM23, RP11-564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2, PCDH15, ZWINT, IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365 V_2156_LC12305_Locke et al. (2006), V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007), V_4696_LC12350_Wong et al. (2007) q11.23-q21.210 65916163 69088264 RP11-757B19 RP11-765O20 40 3.172101 0.544842032 CTNNA3, LRRTM3 V_4700_LC12395_Wong et al. (2007), V_4701_LC12398_Wong et al. (2007) q21.310 76902035 78899964 RP11-7C23 RP11-153F2 20 1.997929 0.609735466 C10orf11, KCNMA1 V_0138_LC12468_Iafrate et al. (2004), V_4703_LC12451_Wong et al. (2007) q22.2-q22.310 82476510 88110303 RP11-20E23 RP11-815L14 47 5.633793 0.614226649 NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1 V_0762_LC12488_Sharp et al. (2005), V_2161_LC12488_Locke et al. (2006), V_4705_LC12506_Wong et al. (2007) q23.1-q23.210 88946983 92958837 RP11-322M19 RP11-351F9 35 4.011854 0.683398508 MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1 V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007) q23.2-q23.3210 106677682 108403168 RP11-236B2 RP11-523M11 15 1.725486 0.530945813 SORCS3, SORCS1 q25.110 108732488 112105813 RP11-349G2 RP11-549L6 29 3.373325 0.528861378 SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1 q25.1-q25.210 113405076 118338660 RP11-47B24 RP11-655F2 44 4.933584 0.611983917 GPAM, TECTB, ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1, C10orf118, TDRD1, VWA2, KIAA1914, ABLIM1, KIAA1600, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3, PNLIP V_0766_LC12664_Sharp et al. (2005), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007) q25.2-q25.310 119422575 120267795 RP11-78F18 RP11-339C6 9 0.84522 0.539711629 RAB11FIP2, C10orf84 q26.11

12 8973046 27229566 RP11-536M6 RP11-236L23 162 18.25652 0.821202436

PHC1, M6PR, KLRG1, C12orf33, A2M, PZP, KLRB1, CLEC2D, DCAL1, CD69, KLRF1, CLEC2B, CLEC12A, CLEC1B, CLEC12B, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRK1, KLRC4, KLRC3, KLRC2, KLRC1, KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50, TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4, PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19, CDKN1B, APOLD1,

DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP, FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4, MGP, C12orf46, ARHGDIB, PDE6H, RERG, PTPRO, EPS8, STRAP, DERA, MGST1, LMO3, FLJ22655, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5, FLJ32894, BCAT1, LRMP, CASC1, LYRM5,

KRAS, FLJ36004, RASSF8, BHLHB3, SSPN, ITPR2, C12orf11, FGFR1OP2, TM7SF3, SURB7, LOC728858V_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007), V_4770_LC13869_Wong et al.

(2007), V_4772_LC13891_Wong et al. (2007), V_4773_LC13907_Wong et al. (2007) p13.31-p11.2312 27618046 29382885 RP11-85K9 RP11-602C4 22 1.764839 0.634956504 PPFIBP1, REP15, MRPS35, KLHDC5, PTHLH, CCDC91, MLSTD1 p11.23-p11.22

12 36900145 45901479 RP11-657C20 RP11-378E16 90 9.001334 0.628672813 ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4, AMIGO2, FAM113B V_4776_LC14002_Wong et al. (2007) q12-q13.1112 53236123 54287863 CTD-2265L24 RP11-165I14 11 1.05174 0.439072 PDE1B, PPP1R1A, LACRT, DCD, SBEM, NEUROD4, OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4 V_4780_LC14080_Wong et al. (2007) q13.2

12 56618854 91662990 RP11-549D7 RP11-766D18 366 35.044136 1.011322948

XRCC6BP1, LRIG3, SLC16A7, FAM19A2, USP15, MON2, C12orf61, AVPR1A, DPY19L2, TMEM5, SRGAP1, FLJ32549, XPOT, TBK1, RASSF3, GNS, WIF1, LEMD3, MSRB3, HMGA2, C12orf31, TMBIM4, IRAK3, HELB, GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B, NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, PSRC2, THAP2, TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290,

TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688V_0165_LC14278_Iafrate et al. (2004), V_2171_LC14120_Locke et al. (2006), V_4774_LC14229_Wong et al. (2007), V_4781_LC14179_Wong et al. (2007), V_4782_LC14235_Wong et al.

(2007), V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007), V_4785_LC14298_Wong et al. (2007) q14.1-q2212 95227258 99482418 RP11-145I4 RP11-635P2 41 4.25516 0.617488476 PCTK2, C12orf63, NEDD1, TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4 q23.112 101002818 102172955 RP11-721B7 RP11-658G20 13 1.170137 0.504327665 NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1 q23.212 103566212 105944772 RP11-419A23 RP11-263M3 21 2.37856 0.602682935 CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NUAK1, CKAP4, TCP11L2, POLR3B, RFX4, RIC8B, C12orf23, MTERFD3, CRY1 q23.312 107506885 107853490 RP11-689B22 CTD-2155D19 4 0.346605 0.244856381 TMEM119, SELPLG, CORO1C, SSH1, DAO, SVOP q24.1112 115722300 116490536 RP11-286N17 RP11-621E17 13 0.768236 0.451895839 TMEM118, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2 V_4788_LC14466_Wong et al. (2007), V_4789_LC14468_Wong et al. (2007) q24.2213 21452320 22522444 CTD-2325E15 RP11-357N10 7 1.070124 0.606685056 q12.11-q12.1213 36708678 39790438 RP11-654P13 RP11-527P15 25 3.08176 0.691999072 POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6 V_4798_LC14797_Wong et al. (2007) q13.3-q14.1113 41083456 41599375 RP11-586C18 RP11-809J21 6 0.515919 0.452437092 KIAA0564, DGKH q14.11

13 42205257 47738418 RP11-632G17 RP11-551P12 52 5.533161 0.695897187 FLJ40919, EPSTI1, DNAJC15, PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13, CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007) q14.11-q14.2

14 18071243 20161983 RP11-404K10 RP11-14J7 23 2.09074 0.53519584OR11H12, POTE14, LOC440157, OR4Q3, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1, OR4K15, OR4K14, OR4K13, OR4L1, OR4K17, OR4N5, OR11G2, OR11H6, OR11H4, TTC5, CCNB1IP1, PARP2, TEP1, OSGEP, APEX1, TMEM55B, NP, RNASE10, RNASE9, RNASE11,

RNASE12


V_4827_LC15340_Wong et al. (2007), V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.2

14 21305621 30483789 RP11-92F11 RP11-802E8 78 9.178168 0.599676797

DAD1, ABHD4, OXA1L, SLC7A7, MRPL52, MMP14, LRP10, REM2, RBM23, PRMT5, C14orf94, JUB, C14orf93, PSMB5, CDH24, ACIN1, C14orf119, CEBPE, SLC7A8, KIAA1443, BCL2L2, PABPN1, SLC22A17, EFS, IL17E, CMTM5, MYH6, MYH7, C14orf120, THTPA, AP1G2, JPH4, DHRS2, C14orf165, DHRS4, DHRS4L2, LOC728635, C14orf121, CPNE6, NRL, PCK2, WDR23, LOC161247, PSME1, C14orf122, PSME2, RNF31, ISGF3G, REC8L1, IPO4, TM9SF1, TSSK4, CHMP4A, MDP-1, NEDD8, GMPR2, TINF2, TGM1, RABGGTA, DHRS1, C14orf21, CIDEB,

LTB4R2, LTB4R, ADCY4, RIPK3, NFATC4, KIAA1305, CBLN3, KIAA0323, C14orf124, CMA1, CTSG, GZMH, GZMB, STXBP6, NOVA1, FOXG1B, PRKD1, KIAA1333, SCFD1, COCH, STRN3V_0175_LC15404_Iafrate et al. (2004), V_4828_LC15358_Wong et al. (2007), V_4829_LC15358_Wong et al. (2007), V_4830_LC15358_Wong et al. (2007), V_4831_LC15358_Wong et al.

(2007), V_4832_LC15402_Wong et al. (2007) q11.2-q1214 32380195 33711991 RP11-642G19 RP11-260C3 12 1.331796 0.425603739 NPAS3, EGLN3 q13.114 35305775 38744740 RP11-119C12 RP11-511F7 31 3.438965 0.490115879 GARNL1, BRMS1L, MBIP, TITF1, NKX2-8, PAX9, SLC25A21, MIPOL1, FOXA1, TTC6, SSTR1, CLEC14A, SEC23A, SIP1, TRAPPC6B, PNN q13.2-q21.114 39369314 39883000 RP11-34O18 RP11-267H5 3 0.513686 0.418867211 q21.114 40367479 42289242 RP11-1151I20 RP11-407M7 17 1.921763 0.451606243 LRFN5 V_4833_LC15499_Wong et al. (2007) q21.1-q21.214 42728966 43688457 RP11-419K22 RP11-118K14 8 0.959491 0.452518349 q21.2-q21.3

14 45233122 62807865 RP11-753K4 RP11-391K4 133 17.574743 0.893101205

RPL10L, MAMDC1, RPS29, PPIL5, RPL36AL, MGAT2, C14orf104, POLE2, KLHDC1, KLHDC2, SDCCAG1, ARF6, LOC283551, LOC196913, C14orf138, SOS2, L2HGDH, ATP5S, CDKL1, MAP4K5, SPG3A, SAV1, NIN, C14orf29, PYGL, TRIM9, TXNDC, FRMD6, GNG2, C14orf166, NID2, PTGDR, PTGER2, KIAA1344, ERO1L, PSMC6, STYX, GNPNAT1, PLEKHC1, DDHD1, BMP4, CDKN3, CNIH, GMFB, CGRRF1, SAMD4A, GCH1, WDHD1, SOCS4, C14orf32, LGALS3, DLG7, FBXO34, KIAA0831, TBPL2, KTN1, PELI2, C14orf101, OTX2, EXOC5, C14orf108,

NAT12, C14orf105, SLC35F4, C14orf37, ACTR10, PSMA3, ARID4A, UNQ9438, TIMM9, KIAA0586, DACT1, DAAM1, GPR135, C14orf149, C14orf100, RTN1, C14orf135, DHRS7, PPM1A, C14orf39, SIX6, SIX1, SIX4, MNAT1, TRMT5, SLC38A6, TMEM30B, PRKCH, HIF1A, SNAPC1, SYT16, KCNH5, RHOJ V_4834_LC15537_Wong et al. (2007), V_4835_LC15559_Wong et al. (2007), V_4836_LC15600_Wong et al. (2007), V_4837_LC15650_Wong et al. (2007) q21.3-q23.2

14 78203239 84867117 RP11-39F22 RP11-46B20 58 6.663878 0.588224754 NRXN3, DIO2, C14orf145, TSHR, GTF2A1, STON2, SEL1L V_0178_LC15831_Iafrate et al. (2004), V_4841_LC15841_Wong et al. (2007), V_4842_LC15858_Wong et al. (2007) q24.3-q31.314 85246333 87174961 RP11-351E2 RP11-392D24 13 1.928628 0.440886211 q31.316 12943978 14308149 RP11-506A20 RP11-318N6 11 1.364171 0.321560088 ERCC4, MKL2 p13.12

16 31649038 33452721 RP11-431E24 RP11-264M14 21 1.803683 0.794547286 ZNF267, TP53TG3

V_0195_LC16821_Iafrate et al. (2004), V_0794_LC16821_Sharp et al. (2005), V_0795_LC16821_Sharp et al. (2005), V_0796_LC16821_Sharp et al. (2005), V_2210_LC16821_Locke et al. (2006), V_2211_LC16821_Locke et al. (2006), V_2212_LC16821_Locke et al. (2006), V_2213_LC16821_Locke et al. (2006), V_2214_LC16821_Locke et al. (2006),

V_2215_LC16821_Locke et al. (2006), V_4440_LC16821_Wong et al. (2007), V_4943_LC16821_Wong et al. (2007), V_4944_LC16821_Wong et al. (2007), V_4945_LC16821_Wong et al. (2007), V_4946_LC16821_Wong et al. (2007), V_4947_LC16821_Wong et al. (2007), V_4948_LC16821_Wong et al. (2007) p11.2

16 69327491 69839688 CTD-2410G13 RP11-783N15 6 0.512197 0.310197472 VAC14, HYDIN V_0678_LC16967_Sharp et al. (2005), V_2043_LC16967_Locke et al. (2006) q22.1-q22.317 36260510 36762766 RP11-146O6 RP13-649M11 5 0.502256 0.940358795 KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A V_0205_LC17492_Iafrate et al. (2004) q21.217 43565909 43931102 RP11-456D7 RP11-636G23 5 0.365193 1.12781257 SKAP1 q21.3217 46563540 51551885 RP11-45O8 RP11-566H7 47 4.988345 2.00166997 NME1, NME1-NME2, NME2, MBTD1, UTP18, CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP V_0209_LC17565_Iafrate et al. (2004), V_5019_LC17572_Wong et al. (2007) q21.33-q2217 56319919 57374119 RP11-124P2 CTD-2245N4 12 1.0542 0.965386429 BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2 q23.217 58308724 58798390 RP11-579J2 RP11-737P17 4 0.489666 0.99951659 V_5021_LC17617_Wong et al. (2007) q23.2-q23.317 63160159 67547347 RP11-484P3 RP11-709B9 41 4.387188 0.638244654 NOL11, BPTF, C17orf58, KPNA2, AMZ2, SLC16A6, ARSG, WIPI1, PRKAR1A, FAM20A, ABCA8, ABCA9, ABCA6, ABCA10, ABCA5, MAP2K6, KCNJ16, KCNJ2 V_0211_LC17666_Iafrate et al. (2004), V_5028_LC17688_Wong et al. (2007) q24.2-q24.317 69072958 69383327 RP11-277J6 RP11-100L23 3 0.310369 0.424615056 C17orf54 q25.118 22310825 27342961 RP11-349H17 RP11-650P15 49 5.032136 1.00388101 KCTD1, AQP4, CHST9, CDH2, DSC3, DSC2, DSC1, DSG1, DSG4, DSG3, DSG2 V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007) q11.2-q12.118 27991653 29931271 RP11-807G14 RP11-117O3 18 1.939618 0.490422727 MEP1B, FAM59A, KLHL14, C18orf34, NOL4 V_0216_LC18106_Iafrate et al. (2004), V_5050_LC18106_Wong et al. (2007) q12.120 47600000 48782946 RP11-414N24 RP11-626D12 8 1.182946 0.893502838 PTGIS, B4GALT5, SLC9A8, SPATA2, ZNF313, SNAI1, Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175, PARD6B V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q13.1320 50176661 54304290 RP11-13O15 RP11-790B5 43 4.127629 1.775561826 ZFP64, TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4, DOK5, CBLN4, MC3R V_0226_LC19822_Iafrate et al. (2004), V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2

21 14574560 31215768 RP11-675D22 RP11-282I5 145 16.641208 0.794162131

STCH, SAMSN1, NRIP1, USP25, C21orf34, CXADR, BTG3, C21orf91, CHODL, PRSS7, NCAM2, MRPL39, JAM2, ATP5J, GABPA, APP, CYYR1, ADAMTS1, ADAMTS5, HEMK2, ZNF294, C21orf6, USP16, CCT8, C21orf7, BACH1, GRIK1, CLDN17, CLDN8, KRTAP26-1, KRTAP27-1, KRTAP23-1, KRTAP13-2, KRTAP13-1, KRTAP13-3, KRTAP13-4, KRTAP15-1, KRTAP19-1, KRTAP19-2, KRTAP19-3, KRTAP19-4, KRTAP19-5, KRTAP19-6, KRTAP19-7, KRTAP6-3, KRTAP6-2, KRTAP22-1, KRTAP6-1, KRTAP20-1, KRTAP20-2, KRTAP21-2, KRTAP21-1, KRTAP8-

1, KRTAP11-1V_0231_LC20086_Iafrate et al. (2004), V_0232_LC20109_Iafrate et al. (2004), V_5158_LC20061_Wong et al. (2007), V_5159_LC20079_Wong et al. (2007), V_5160_LC20086_Wong et al.

(2007) q11.2-q22.1121 35226074 36129760 RP11-71L1 RP11-714H12 6 0.903686 0.407452069 RUNX1 q22.1221 37386223 39009916 RP11-718K4 RP11-807F14 20 1.623693 0.333083664 TTC3, DSCR9, DSCR3, DYRK1A, KCNJ6, DSCR4, DSCR8, DSCR10, KCNJ15, ERG q22.13-q22.2


1 72641637 109752527 RP11-10G6 RP11-321O3 379 37.11089 -0.678218534

FPGT, TNNI3K, C1orf173, CRYZ, C1orf171, LHX8, SLC44A5, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3, ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A, C1orf118, NEXN, FUBP1, DNAJB4, GIPC2, PTGFR, IFI44L, IFI44, LPHN2, TTLL7, PRKACB, SAMD13, DNASE2B, BXDC5, GNG5, SPATA1, CTBS, SSX2IP, EDG7, MCOLN2, MCOLN3, WDR63, C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, CLCA3, SH3GLB1, HS2ST1, LMO4, PKN2, GTF2B, KAT3, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP5,

GBP6, LRRC8B, LRRC8C, LRRC8D, ZNF326, BARHL2, ZNF644, HFM1, CDC7, TGFBR3, BRDT, ABHD7, BTBD8, C1orf146, GLMN, C1orf82, GFI1, EVI5, RPL5, FAM69A, MTF2, TMED5, CCDC18, DR1, FNBP1L, BCAR3, DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3, SLC44A3, CNN3, ALG14, TMEM56, RWDD3, PTBP2, DPYD, SNX7, PAP2D, LPPR4, PALMD, FRRS1, AGL, SLC35A3, HIAT1, SASS6, CCDC76, LRRC39, DBT, RTCD1, CDC14A, GPR88, VCAM1, EXTL2, SLC30A7, DPH5, EDG1, OLFM3, COL11A1, RNPC3, AMY2B, AMY2A,

AMY1A, AMY1C, AMY1B, PRMT6, NTNG1, VAV3, SLC25A24, FAM102B, C1orf59, PRPF38B, FNDC7, STXBP3, C1orf62, GPSM2, CLCC1, WDR47, TAF13, C1orf119, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5

V_0010_LC0552_Iafrate et al. (2004), V_0011_LC0611_Iafrate et al. (2004), V_0012_LC0649_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_2049_LC0673_Locke et al. (2006), V_4230_LC0507_Wong et al. (2007), V_4231_LC0527_Wong et al. (2007), V_4232_LC0542_Wong et al. (2007), V_4233_LC0552_Wong et al. (2007), V_4234_LC0594_Wong et al. (2007), V_4235_LC0611_Wong et al. (2007), V_4236_LC0622_Wong et al. (2007), V_4237_LC0630_Wong

et al. (2007), V_4238_LC0649_Wong et al. (2007), V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007), V_4241_LC0680_Wong et al. (2007), V_0365_LC0642_Vissers et al. p31.1-p13.3

1 111709440 112065749 RP11-717K8 RP11-705K13 3 0.356309 -0.364888822 OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A p13.2

1 112396181 115560754 RP11-2K19 RP11-316G18 26 3.164573 -0.553407123 CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC, PPM1J, FAM19A3, SLC16A1, LRIG2, MAGI3, PHTF1, RSBN1, PTPN22, C1orf178, AP4B1, DCLRE1B, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, DENND2C, AMPD1, NRAS, CSDE1, SIKE, SYCP1, TSHB, TSPAN2 V_0013_LC0711_Iafrate et al. (2004), V_4242_LC0704_Wong et al. (2007) p13.21 116005394 116466983 RP11-305H5 RP11-633H22 3 0.461589 -0.275011089 VANGL1, CASQ2, NHLH2, SLC22A15, C1orf161 p13.11 116771938 120324991 RP11-378H22 RP11-385C11 30 3.553053 -0.565365236 CD58, IGSF3, CD2, PTGFRN, IGSF2, TTF2, TRIM45, VTCN1, MAN1A2, FAM46C, GDAP2, WDR3, SPAG17, TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2 V_4243_LC0729_Wong et al. (2007), V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007) p13.1-p121 154350931 154861834 RP11-647N20 RP11-740J19 3 0.510903 -0.261186328 LMNA, SEMA4A, KIAA0446, PMF1, BGLAP, PAQR6, SMG5, TMEM79, C1orf85, VHLL, CCT3, C1orf182, RHBG, C1orf61, MEF2D, IQGAP3, APOA1BP, GPATC4, HAPLN2 q22-q23.12 199261275 199965422 RP11-87H17 RP11-342I17 6 0.704147 -0.343723982 SATB2 q33.1

2 206231857 216724384 RP11-58D11 RP11-589D23 105 10.492527 -0.607627948NRP2, FLJ20309, NDUFS1, EEF1B2, GPR1, ADAM23, MDH1B, KIAA0971, CPO, KLF7, CREB1, LOC151194, FLJ40432, FZD5, LOC389072, CRYGD, CRYGC, CRYGB, CRYGA, IDH1, PIP5K3, PTHR2, MAP2, C2orf21, RPE, FLJ23861, ACADL, MYL1, LANCL1, CPS1, ERBB4,

IKZF2, SPAG16, LOC402117, BARD1, ABCA12, ATIC, FN1, MREG, PECR, LOC92691, XRCC5 V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007), V_4326_LC2650_Wong et al. (2007) q33.3-q35

2 218596839 236116745 RP11-50E4 RP11-93C24 199 17.519906 -0.884821677

FLJ46536, IL8RB, IL8RA, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MGC50811, SLC11A1, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, WNT10A, CDK5R2, FEV, CRYBA2, DKFZp434O052, IHH, XLF, SLC23A3, C2orf24, C2orf17, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA1, DNAJB2, PTPRN, RESP18, DNPEP, DES, GMPPA, ACCN4, CHPF, MGC99813, OBSL1, INHA, STK11IP, SLC4A3, EPHA4, PAX3, FLJ32447, SGPP2, FARSLB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FLJ22746, CUL3, DOCK10, IRS1, RHBDD1, COL4A4, COL4A3, C2orf33, TM4SF20, HRB, DKFZp547H025, SLC19A3, CCL20, WDR69, FLJ20701, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, LOC93349, SP100, CAB39, ITM2C,

GPR55, PSMD1, HTR2B, ARMC9, B3GNT7, NCL, MGC43122, NMUR1, MGC35154, PTMA, PDE6D, COPS7B, NPPC, DIS3L2, ALPP, ALPPL2, ALPI, ECEL1, CHRND, CHRNG, TIGD1, EIF4E2, EFHD1, TNRC15, KCNJ13, UNQ830, NGEF, NEU2, INPP5D, ATG16L1, SAG, DGKD, USP40, UGT1A8, UGT1A10, UGT1A9, UGT1A7, UGT1A6, UGT1A5, UGT1A4, UGT1A3, HCG3, UGT1A1, DKFZp762E131, TRPM8, SPP2, ARL4C, SH3BP4, CENTG2 V_0030_LC2686_Iafrate et al. (2004), V_4328_LC2702_Wong et al. (2007), V_4329_LC2749_Wong et al. (2007) q35-q37.2

2 240894657 241392414 RP11-649N20 CTD-2036A16 4 0.497757 -0.593131922 GPC1, ANKMY1, LOC285193, RNPEPL1, CAPN10, GPR35, AQP12A, KIF1A q37.32 242174892 242750818 RP11-811O7 RP11-1159G17 4 0.575926 -0.284529788 THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, FLJ33590 V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4331_LC2814_Wong et al. (2007) q37.3

4 39105 5873444 RP11-335H3 RP11-119J9 63 5.834339 -0.805462161

ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, TETRAN, C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2,

EVC, CRMP1 V_2066_LC4068_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) p16.3-p16.14 6576277 7142195 RP11-661G11 RP11-701C17 7 0.565918 -0.460889301 MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1 p16.14 8158012 8557307 RP11-763A16 RP11-774O3 4 0.399295 -0.423269034 ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725 V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007) p16.14 9043685 9460535 RP11-238O15 RP11-389N22 3 0.41685 -0.262797676 DEFB131, LOC650293, DRD5, SLC2A9 V_0699_LC4236_Sharp et al. (2005), V_2069_LC4236_Locke et al. (2006), V_4378_LC4236_Wong et al. (2007) p16.14 9909334 18700810 RP11-385C8 RP11-753I2 75 8.791476 -1.005157277 KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL V_4379_LC4291_Wong et al. (2007) p16.1-p15.31

4 19654595 91735103 CTD-2260I8 RP11-324B17 590 72.080508 -2.341710798

SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721, PCDH7, CENTD1, FLJ11017, RELL1, PGM2, TBC1D1, PTTG2, KLF3, TLR10, TLR1, TLR6, LOC92689, FLJ23235, KLHL5, WDR19, RFC1, KLB, RPL9, LIAS, UGDH, LOC201895, HIP2, SCC-112, N4BP2, RHOH, CHRNA9, FLJ20273, FLJ14001, APBB2, UCHL1, DKFZP686A012, PHOX2B, TMEM33, WDR21B, SLC30A9, CCDC4, LOC152573, ATP8A1, LOC389207, KCTD8, YIPF7, GUF1, GNPDA2, GABRG1, GABRA2, COX7B2, GABRA4, GABRB1, COMMD8, ATP10D, CORIN, NFXL1, CNGA1, NPAL1, TXK, TEC, SLC10A4, ZAR1, FRYL, OCIAD1, OCIAD2, FLJ21511, DCUN1D4, LOC339977, SGCB, SPATA18, USP46, FLJ12684, RASL11B,

SCFD2, FIP1L1, LNX1, LOC402176, CHIC2, GSH2, PDGFRA, KIT, KDR, SRD5A2L, TPARL, CLOCK, PDCL2, NMU, EXOC1, CEP135, AASDH, PPAT, PAICS, SRP72, ARL9, HOP, SPINK2, REST, C4orf14, POLR2B, IGFBP7, LPHN3, SRD5A2L2, EPHA5, CENPC1, BRDG1, UBE1L2, GNRHR, TMPRSS11D, TMPRSS11A, TMPRSS11F, CHR415SYT, TMPRSS11B, YTHDC1, UGT2B17, TMPRSS11E, UGT2B15, UGT2B10, UGT2A3, UGT2B7, UGT2B11, UGT2B28, UGT2B4, UGT2A1, SULT1B1, SULT1E1, CSN1S1, CSN2, STATH, HTN3, HTN1, LOC401137, APIN,

C4orf7, CSN3, NYD-SP26, SMR3A, SMR3B, PROL1, MUC7, AMTN, AMBN, ENAM, IGJ, SAS10, RUFY3, GRSF1, MOBKL1A, DCK, SLC4A4, G

V_0045_LC4542_Iafrate et al. (2004), V_0130_LC4464_Iafrate et al. (2004), V_0700_LC4677_Sharp et al. (2005), V_0701_LC4909_Sharp et al. (2005), V_2071_LC4709_Locke et al. (2006), V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006), V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007), V_4384_LC4441_Wong et al. (2007), V_4385_LC4531_Wong et al. (2007), V_4386_LC4542_Wong et al. (2007), V_4387_LC4546_Wong


(2007), V_4397_LC4723_Wong et al. (2007), V_4398_LC4750_Wong et al. (2007), V_4399_LC4933_Wong et al. (2007), V_4401_LC5023_Wong et al. (2007), V_4402_LC5044_Wong et al. (2007), V_4405_LC5085_Wong et al. (2007), V_4762_LC4709_Wong et al. (2007) p15.31-q22.1

5 56211763 68863065 RP11-122O21 RP11-427A10 221 12.651302 -0.975305861MGC33648, MIER3, GPBP1, DKFZp686D097, PLK2, C5orf29, RAB3C, PDE4D, DEPDC1B, ELOVL7, ERCC8, NDUFA12L, DKFZP686E215, FLJ37543, KIF2A, HSA9761, IPO11, LOC389293, HTR1A, RNF180, R7BP, P18SRP, SDCCAG10, ADAMTS6, CENPK, PPWD1, TRIM23,

FLJ13611, LOC643079, SGTB, NLN, ERBB2IP, SFRS12, FLJ46010, LOC375449, CD180, PIK3R1, SLC30A5, CCNB1, CENPH, MRPS36, CDK7, KENAE, TAF9, RAD17, MARVELD2, OCLN V_4446_LC6996_Wong et al. (2007) q11.2-q13.2

Gains

Losses

HCH1

5 70158352 131752038 RP11-89M15 RP11-111G12 797 61.593686 -0.915857894

SERF1A, SERF1B, SMN1, SMN2, NAIP, GTF2H2, LOC653866, BDP1, MCCC2, CART, MAP1B, MRPS27, PTCD2, ZNF366, TNPO1, FCHO2, TMEM171, MGC13034, FOXD1, BTF3, ANKRA2, UTP15, RGNEF, ENC1, HEXB, GFM2, TINP1, GCNT4, HMGCR, COL4A3BP, POLK, FLJ35779, SV2C, IQGAP2, F2RL2, F2R, F2RL1, S100Z, CRHBP, AGGF1, ZBED3, PDE8B, WDR41, OTP, TBCA, AP3B1, SCAMP1, LHFPL2, ARSB, DMGDH, BHMT2, BHMT, JMY, HOMER1, PAPD4, CMYA5, MTX3, THBS4, SERINC5, SPZ1, ZFYVE16, UNQ9217, DP58, DHFR,

MSH3, RASGRF2, CKMT2, ZCCHC9, ACOT12, SSBP2, ATG10, RPS23, LOC92270, TMEM167, XRCC4, CSPG2, HAPLN1, EDIL3, COX7C, RASA1, CCNH, MGC33214, MEF2C, CETN3, LOC153364, POLR3G, LYSMD3, GPR98, ARRDC3, NR2F1, C5orf21, FLJ25680, MGC34713, ANKRD32, MCTP1, FAM81B, KIAA0372, ARSK, GPR150, LOC317671, SPATA9, RHOBTB3, GLRX, ELL2, PCSK1, CAST, ARTS-1, LRAP, LNPEP, LIX1, RIOK2, RGMB, CHD1, UNQ1912, ST8SIA4, SLCO4C1, SLCO6A1, PAM, FLJ20125, HISPPD1, LOC90355, NUDT12, EFNA5, FBXL17, FER, PJA2, MAN2A1, LOC91137, TSLP, WDR36, CAMK4, STARD4, C5orf13, EPB41L4A, APC, SRP19, REEP5, DCP2, MCC, TSSK1, YTHDC2, KCNN2, TRIM36, PGGT1B, CCDC112, FEM1C, TICAM2, TMED7, CDO1, ATG12, AP3S1, FLJ90650, COMMD10, SEMA6A,

DTWD2, DMXL1, TNFAIP8, HSD17B4, LOC340069, LOC51334, FTMT, SRFBP1, LOX, FLJ32921, SNCAIP, SNX2, SNX24, PPIC, CCDC100, C

V_0065_LC7090_Iafrate et al. (2004), V_0066_LC7143_Iafrate et al. (2004), V_0067_LC7505_Iafrate et al. (2004), V_0710_LC7017_Sharp et al. (2005), V_0712_LC7231_Sharp et al. (2005), V_0713_LC7239_Sharp et al. (2005), V_2088_LC7017_Locke et al. (2006), V_2090_LC7239_Locke et al. (2006), V_4447_LC7017_Wong et al. (2007), V_4449_LC7017_Wong et al. (2007), V_4452_LC7017_Wong et al. (2007), V_4453_LC7022_Wong et al. (2007), V_4454_LC7028_Wong et al. (2007), V_4455_LC7036_Wong et al. (2007), V_4456_LC7103_Wong


(2007), V_4466_LC7203_Wong et al. (2007), V_4467_LC7210_Wong et al. (2007), V_4468_LC7239_Wong et al. (2007), V_4469_LC7272_Wong et al. (2007), V_4470_LC7274_Wong et al. (2007), V_4471_LC7288_Wong et al. (2007), V_4472_LC7288_Wong et al. (2007), V_4473_LC7387_Wong et al. (2007), V_4474_LC7423_Wong et al. (2007), V_4475_LC7446_Wong

et al. (2007), V_4476_LC7446_Wong et al. (2007), V_4477_LC7470_Wong et al. (2007), V_447 q13.2-q31.15 132316849 132704770 RP11-485M7 RP11-254M5 3 0.387921 -0.463419583 AFF4, ZCCHC10, HSPA4, FSTL4 q31.16 162508197 166021806 RP11-168A5 RP11-752K3 37 3.513609 -0.980452769 PARK2, PACRG, QKI, C6orf118, PDE10A V_4515_LC9007_Wong et al. (2007), V_4516_LC9028_Wong et al. (2007), V_4517_LC9032_Wong et al. (2007) q26-q276 169143079 170851849 RP11-420D4 RP11-113J6 15 1.70877 -0.815788539 THBS2, WDR27, C6orf120, PHF10, TCTE3, C6orf70, C6orf122, C6orf208, DLL1, KIAA1838, PSMB1, TBP, PDCD2 V_4518_LC9057_Wong et al. (2007) q27

7 40844 1839666 CTD-2245C5 RP11-613E8 14 1.798822 -0.571185063 FAM20C, PDGFA, PRKAR1B, FLJ20397, UNC84A, FLJ44124, C7orf20, CENTA1, COX19, CYP2W1, MGC11257, GPR146, GPR30, ZFAND2A, LOC641901, UNCX4.1, MICALL2, MICAL-L2, INTS1, MAFK, MGC9712, MGC10911, LOC401296, MAD1L1V_0093_LC9158_Iafrate et al. (2004), V_4519_LC9158_Wong et al. (2007), V_4520_LC9158_Wong et al. (2007), V_4521_LC9158_Wong et al. (2007), V_4522_LC9158_Wong et al.

(2007), V_4523_LC9158_Wong et al. (2007) p22.37 2151519 2627556 RP11-84H20 RP11-745M18 4 0.476037 -0.422837497 MAD1L1, FTSJ2, NUDT1, SNX8, EIF3S9, CHST12, LFNG, C7orf27, IQCE p22.27 4319490 5393991 RP11-651L4 RP11-438P11 7 1.074501 -0.34260984 FOXK1, KIAA0415, FLJ10324, PAPOLB, MMD2, RBAK, LOC389458, WIPI2, SLC29A4, KIAA1856 p22.2-p22.17 65048473 68640661 RP11-636K11 RP11-790K18 36 3.592188 -0.410228207 VKORC1L1, GUSB, ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1 V_2102_LC9561_Locke et al. (2006) q11.21-q11.22

7 69412500 76142312 RP11-180J15 RP11-122A5 84 6.729812 -0.46569082

AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24, RHBDD2, POR, TMPIT, STYXL1, MDH2, FLJ37078,

HSPB1, YWHAG, SRCRB4D, ZP3, DTX2, UPK3B, POMZP3V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al.

(2007), V_4545_LC9609_Wong et al. (2007) q11.22-q11.23

7 97153799 102274432 RP11-743C24 RP11-694M1 48 5.120633 -0.453949686

TAC1, ASNS, LOC441268, OCM, LMTK2, BHLHB8, DKFZP434B033, BRI3, BAIAP2L1, NPTX2, TMEM130, TRRAP, SMURF1, ARPC1A, ARPC1B, PDAP1, BUD31, PTCD1, CPSF4, ATP5J2, LOC285989, ZNF394, ZKSCAN5, DKFZp727G131, ZNF655, ZNF498, CYP3A5, CYP3A7, CYP3A4, CYP3A43, OR2AE1, TRIM4, GJE1, AZGP1, ZKSCAN1, ZNF38, ZNF3, COPS6, MCM7, AP4M1, TAF6, MGC40499, LOC255374, LOC389541, FLJ10925, GAL3ST4, GPC2, STAG3, GATS, MGC2463, MGC57359, PILRB, PILRA, ZCWPW1, BCDIN3, C7orf47, LOC402573,

TSC22D4, FLJ37538, HRBL, LRCH4, FBXO24, PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, PERQ1, POP7, EPO, ZAN, EPHB4, SLC12A9, TRIP6, ARS2, LOC402682, ACHE, MUC17, TRIM56, SERPINE1, AP1S1, VGF, FLJ39237, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYLC2PL, CUTL1, SH2B2, PRKRIP1, C7orf19, ALKBH4, DKFZp434K181, POLR2J, MGC119295, POLR2J3, RASA4, POLR2J2, MGC35361, FBXL13

V_0107_LC9766_Iafrate et al. (2004), V_0724_LC9769_Sharp et al. (2005), V_2104_LC9753_Locke et al. (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_4547_LC9750_Wong et al. (2007), V_4548_LC9750_Wong et al. (2007), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_4551_LC9756_Wong et

al. (2007), V_4552_LC9762_Wong et al. (2007), V_4553_LC9769_Wong et al. (2007) q21.3-q22.1

8 7138613 8212432 RP11-743F19 RP11-556O5 3 1.073819 -0.810012657 DEFB104A, DEFB104B, DEFB107A, DEFB107B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, SPAG11, SPAG11A, DEFB103B, DEFB103A, DEFB4, DEFB109


V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007) p23.1

8 12199767 12511915 RP11-350L10 CTD-2185F10 6 0.312148 -0.457473722 DEFB130, LOC440053V_0740_LC10408_Sharp et al. (2005), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_4582_LC10408_Wong et al. (2007), V_4583_LC10408_Wong et al.

(2007), V_4584_LC10408_Wong et al. (2007) p23.1

9 29038 18875253 RP11-143M1 RP11-269B5 179 18.846215 -0.765712438FOXD4, CBWD1, C9orf66, DOCK8, ANKRD15, DMRT1, DMRT3, DMRT2, SMARCA2, VLDLR, KCNV2, KIAA0020, RFX3, GLIS3, SLC1A1, C9orf68, PPAPDC2, CDC37L1, AK3, RCL1, JAK2, INSL6, INSL4, RLN2, RLN1, C9orf46, CD274, PDCD1LG2, KIAA1432, KIAA1815, MLANA,

KIAA2026, RANBP6, C9orf26, TPD52L3, UHRF2, GLDC, JMJD2C, C9orf123, PTPRD, TYRP1, C9orf150, MPDZ, NFIB, ZDHHC21, CER1, FREM1, C9orf52, SNAPC3, PSIP1, C9orf93, BNC2, LOC648570, C9orf39, SH3GL2, ADAMTSL1, C9orf94V_0125_LC11024_Iafrate et al. (2004), V_0126_LC11024_Iafrate et al. (2004), V_0127_LC11147_Iafrate et al. (2004), V_0128_LC11164_Iafrate et al. (2004), V_4615_LC11143_Wong et

al. (2007) p24.3-p22.1

9 19332911 36774290 RP11-553B3 RP11-8N6 160 17.441379 -0.894923509

DENND4C, RPS6, ASAH3L, SLC24A2, MLLT3, KIAA1797, PTPLAD2, IFNB1, IFNW1, IFNA21, IFNA4, IFNA14, IFNA7, IFNA10, IFNA16, IFNA17, IFNA5, KLHL9, IFNA6, IFNA13, IFNA2, IFNA8, IFNA1, IFNE1, MTAP, CDKN2A, CDKN2B, DMRTA1, ELAVL2, TUSC1, C9orf82, PLAA, IFT74, LRRC19, TEK, C9orf11, MOBKL2B, IFNK, C9orf72, LRRN6C, ACO1, DDX58, TOPORS, NDUFB6, TAF1L, LOC401498, APTX, DNAJA1, SMU1, B4GALT1, SPINK4, BAG1, CHMP5, NFX1, AQP7, AQP3, NOL6, PRSS3, UBE2R2, UBAP2, WDR40A, UBAP1, C9orf48, NUDT2,

KIAA1161, C9orf24, C9orf25, DNAI1, UNQ470, CNTFR, C9orf23, DCTN3, ARID3C, OPRS1, GALT, IL11RA, CCL27, CCL19, CCL21, DNAJB5, MGC41945, VCP, FANCG, PIGO, STOML2, KIAA1539, UNC13B, FLJ46309, LOC158381, RUSC2, TESK1, CD72, SIT1, MGC31967, C9orf100, CA9, TPM2, TLN1, CREB3, GBA2, KIAA0258, PC-3, NPR2, SPAG8, HINT2, C9orf128, C9orf127, OR13J1, LOC646962, OR2S2, RECK, C9orf19, CCIN, CLTA, GNE, RNF38, MELK V_0741_LC11289_Sharp et al. (2005), V_4616_LC11224_Wong et al. (2007), V_4617_LC11257_Wong et al. (2007), V_4618_LC11302_Wong et al. (2007) p22.1-p13.2

9 37229857 38128311 RP11-777A17 RP11-666G2 10 0.898454 -0.571290781 ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10, FRMPD1, RG9MTD3, EXOSC3, WDR32, MCART1, SHB V_2127_LC11326_Locke et al. (2006) p13.2-p13.1

9 38374048 41611477 RP11-579K14 RP11-605F6 15 3.237429 -0.472344899 ALDH1B1, IGFBPL1, CNTNAP3, LOC642265, LOC727830, ZNF658, ZNF658BV_0742_LC11330_Sharp et al. (2005), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. (2006), V_2131_LC11330_Locke et al. (2006), V_4619_LC11330_Wong et al.

(2007), V_4620_LC11330_Wong et al. (2007), V_4623_LC11330_Wong et al. (2007), V_4626_LC11330_Wong et al. (2007) p13.1-p12

9 44924895 67411627 RP11-157L3 RP11-700I13 15 22.486732 -0.601119605 LOC158318, C9orf36


V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_4625_LC11344_Wong et al. (2007), V_4629_LC11330_Wong et al. (2007), V_4631_LC11330_Wong et al. (2007), V_4632_LC11330_Wong et al. (2007),

V_4633_LC11330_Wong et al. (2007), V_4634_LC11330_Wong et al. (2007), V_4635_LC11330_Wong et al. (2007), V_4636_LC11330_Wong et al. (2007), V_4638_LC11330_Wong et al. (2007), V_4639_LC11344_Wong et al. (2007), V_4640_LC11344_Wong et al. (2007) p11.2-q12

9 125650754 126941040 RP11-140H11 RP11-346B17 14 1.290286 -0.612958826 DENND1A, LHX2, NEK6, PSMB7, NR5A1, NR6A1, OLFML2A, LOC401551, RPL35, ARPC5L, GOLGA1, C9orf126 q33.2-q33.3

9 129282729 140237228 RP11-373J8 RP11-668B20 98 10.954499 -2.025448911

ODF2, GLE1L, SPTAN1, WDR34, SET, PKN3, ZDHHC12, ZYG11BL, TBC1D13, ENDOG, C9orf114, CCBL1, LRRC8A, PHYHD1, TMEM15, NUP188, SH3GLB2, FAM73B, DOLPP1, CRAT, PPP2R4, IER5L, C9orf106, C9orf50, C9orf32, ASB6, PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, GPR107, FLJ46836, FREQ, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, P518, FIBCD1, LAMC3, C9orf58, NUP214, FAM78A, PPAPDC3, POMT1, UCK1, RAPGEF1, CRSP8, NTNG2, SETX, TTF1, FLJ46082, BARHL1, DDX31, GTF3C4, C9orf98, C9orf9,

TSC1, GFI1B, GTF3C5, CEL, RALGDS, GBGT1, OBP2B, ABO, SURF6, SURF5, RPL7A, SURF1, SURF2, SURF4, C9orf96, REXO4, ADAMTS13, C9orf7, SLC2A6, LOC389827, ADAMTSL2, LOC642968, DBH, SARDH, VAV2, BRD3, WDR5, RXRA, COL5A1, FCN2, FCN1, OLFM1, KIAA0649, C9orf116, MRPS2, LCN1, OBP2A, PAEP, GLT6D1, LCN9, SOHLH1, KCNT1, CAMSAP1, UBADC1, BTBD14A, LHX3, QSOX2, GPSM1, LOC728489, CARD9, SNAPC4, SDCCAG3, PMPCA, INPP5E, KIAA0310, FLJ36779, NOTCH1, EGFL7, AGPAT2, FAM69B, LCN10,

LCN6, LCN8, UNQ2541, MGC14141, KIAA1984, C9orf86, LOC389813, PHPT1, MAMDC4, EDF1, TRAF2, FBXW5, C8G, LCN12, PTGDS, FLJ4


V_4663_LC11864_Wong et al. (2007) q33.3-q34.3

11 74445 7946476 RP11-182E22 RP11-494M8 65 7.872031 -0.900389485

PDDC1, CEND1, SLC25A22, LRDD, RPLP2, PNPLA2, MGC45840, CD151, POLR2L, TSPAN4, CHID1, AP2A2, MUC2, TOLLIP, BRSK2, HCCA2, DUSP8, KRTAP5-1, KRTAP5-2, KRTAP5-3, KRTAP5-4, KRTAP5-5, KRTAP5-6, CTSD, SYT8, TNNI2, LSP1, TNNT3, MRPL23, IGF2, IGF2AS, INS-IGF2, INS, TH, ASCL2, TSPAN32, CD81, TSSC4, TRPM5, KCNQ1, KCNQ1DN, CDKN1C, SLC22A18AS, SLC22A18, PHLDA2, NAP1L4, CARS, OSBPL5, C11orf36, MRGPRE, ZNF195, ART5, ART1, CHRNA10, NUP98, FRAG1, RHOG, STIM1, RRM1, OR52B4, TRIM21, OR52K2, OR52K1, OR52M1, C11orf40, OR52I2, OR52I1, TRIM68, OR51D1, OR51E1, OR51E2, OR51F1, OR52R1, OR51F2, OR51S1, OR51T1, OR51A7, OR51G2, OR51G1, OR51A4, OR51A2, MMP26, OR51L1, OR52J3, OR52E2, OR52A4, OR52A5, OR52A1, OR51V1, HBB, HBD,

HBG1, HBG2, HBE1, OR51B4, OR51B2, OR51B5, OR51B6, OR51M1, OR51Q1, OR51I1, OR51I2, OR52D1, UBQLN3, UBQLNL, OR52H1, OR52B6, TRIM6, TRIM6-TRIM34, TRIM34, TRIM5, TRIM22, OR56B1, OR52N4, OR52N5, OR52N1, OR52N2, OR52E6, OR52E8, OR52E4, OR56A3, OR52L1, OR56A4, OR56A1, OR56B4, OR52B2, OR52W1, C11orf42, C11orf56, CNGA4, CCKBR, PRKCDBP, SMPD1, APBB1, HPX

V_0767_LC12925_Sharp et al. (2005), V_2163_LC12925_Locke et al. (2006), V_2164_LC12925_Locke et al. (2006), V_4725_LC12865_Wong et al. (2007), V_4726_LC12865_Wong et al. (2007), V_4728_LC12896_Wong et al. (2007), V_4729_LC12896_Wong et al. (2007), V_4730_LC12916_Wong et al. (2007) p15.5-p15.4

11 8805871 10657912 RP11-44B18 RP13-493C22 21 1.852041 -0.608706057 ST5, C11orf17, C11orf16, ASCL3, TMEM9B, NRIP3, SCUBE2, RAB6IP1, TMEM41B, IPO7, ZNF143, WEE1, SWAP70, SBF2, ADM, AMPD3, RNF141, XLKD1, MRVI1 V_0143_LC12968_Iafrate et al. (2004) p15.411 13293220 14876329 RP11-749I12 RP11-699C18 14 1.583109 -0.622799515 ARNTL, BTBD10, PTH, MLSTD2, SPON1, RRAS2, COPB, PSMA1, PDE3B, CYP2R1 p15.211 16040623 17218047 RP11-435C13 RP11-689L7 13 1.177424 -0.525587005 SOX6, C11orf58, PLEKHA7, RPS13, PIK3C2A V_4731_LC12993_Wong et al. (2007) p15.2-p15.111 18102681 19286458 CTD-2015O16 RP11-118A14 15 1.183777 -0.727804706 MRGPRX3, MRGPRX4, SAA4, SAA2, SAA1, HPS5, GTF2H1, LDHA, LDHC, LDHAL6A, TSG101, UEV3, SPTY2D1, TMEM86A, IGSF22, PTPN5, MRGPRX1, MRGPRX2, ZDHHC13, CSRP3, E2F8 V_4732_LC13002_Wong et al. (2007) p15.1

11 19618204 31904318 RP11-359E10 RP11-26B16 130 12.286114 -0.937307324NAV2, DBX1, HTATIP2, PRMT3, SLC6A5, NELL1, TMEM16E, SLC17A6, FANCF, GAS2, LUZP2, TMEM16C, MUC15, SLC5A12, LOC387758, BBOX1, CCDC34, LGR4, LIN7C, BDNF, KIF18A, METT5D1, KCNA4, FSHB, C11orf46, MPPED2, DCDC5, DCDC1, ZCSL3, IMMP1L, ELP4,

PAX6 V_0145_LC13078_Iafrate et al. (2004), V_2166_LC13021_Locke et al. (2006), V_4733_LC13087_Wong et al. (2007) p15.1-p1311 32352513 33454131 RP11-710L2 RP11-319G20 13 1.101618 -0.477366385 WT1, WIT1, hfl-B5, CCDC73, PRRG4, QSER1, DEPDC7, TCP11L1, CSTF3, HIPK3 V_4735_LC13093_Wong et al. (2007) p1311 36607905 44060337 RP11-758L19 RP11-70A9 84 7.452432 -0.826747868 C11orf74, LRRC4C, API5, TTC17, HSD17B12, ALKBH3, LOC390110, PHACS V_4738_LC13143_Wong et al. (2007), V_4739_LC13153_Wong et al. (2007), V_4740_LC13164_Wong et al. (2007) p12-p11.2

11 45752317 56397505 RP11-369O4 RP11-100N3 75 10.645188 -0.827756328

SLC35C1, CRY2, MAPK8IP1, LOC143678, PEX16, GYLTL1B, PHF21A, CREB3L1, DGKZ, MDK, CHRM4, FLJ20294, FLJ32675, KIAA0652, ARHGAP1, ZNF408, F2, CKAP5, LRP4, C11orf49, ZNF289, PACSIN3, DDB2, ACP2, NR1H3, MADD, MYBPC3, SPI1, SLC39A13, PSMC3, RAPSN, CUGBP1, KBTBD4, NDUFS3, C1QTNF4, MTCH2, AGBL2, FNBP4, NUP160, PTPRJ, OR4B1, OR4X2, OR4X1, OR4S1, OR4C3, OR4A47, FOLH1, OR4C13, OR4C12, OR4A5, OR4C46, TRIM48, OR4A16, OR4A15, OR4C15, OR4C16, OR4C11, OR4P4, OR4S2, OR4C6, OR5D13, OR5D14, OR5L1, OR5D18, OR5L2, OR5D16, TRIM51, OR5W2, OR5I1, OR10AG1, OR5F1, OR5AS1, OR8I2, OR8H2, OR8H3, OR8J3, OR8K5, OR5J2, OR5T2, OR5T3, OR5T1, OR8H1, OR8K3, OR8K1, OR8J1, OR8U1, OR5R1, OR5M9, OR5M3, OR5M8, OR5M11,

OR5M10, OR5M1, OR5AP2, OR5AR1, OR9G1, OR9G9, OR9G4V_0147_LC13187_Iafrate et al. (2004), V_0148_LC13223_Iafrate et al. (2004), V_2167_LC13212_Locke et al. (2006), V_4741_LC13180_Wong et al. (2007), V_4742_LC13206_Wong et al.

(2007), V_4743_LC13212_Wong et al. (2007), V_5013_LC13187_Wong et al. (2007) p11.2-q1111 57562600 58461380 RP11-659P15 RP11-780O24 11 0.89878 -0.636565429 OR9Q1, OR9I1, OR9Q2, OR1S2, OR1S1, OR10Q1, OR10W1, OR5B17, OR5B3, OR5B2, OR5B12, OR5B21, LPXN, ZFP91, CNTF, GLYAT, GLYATL2 V_0149_LC13233_Iafrate et al. (2004), V_4745_LC13231_Wong et al. (2007) q12.111 58626315 59409014 RP11-753E17 RP11-568F15 10 0.782699 -0.627383044 FAM111B, FAM111A, MPEG1, OR5AN1, OR5A2, OR5A1, OR4D6, OR4D10, OR4D11, OR4D9, OSBP, FLJ36874, OR10V1, STX3A, MRPL16, GIF, TCN1 V_4746_LC13237_Wong et al. (2007) q12.111 60573488 60850842 RP11-465F2 RP11-42A7 4 0.277354 -0.60544999 CD5, VPS37C, PGA3, PGA4, PGA5, VWCE, DDB1 V_4747_LC13245_Wong et al. (2007), V_4748_LC13245_Wong et al. (2007) q12.2

11 61528804 63411815 RP11-328A20 RP11-466C23 20 1.883011 -0.518331658INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, RBM21, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, LOC751071, LOC790955, LOC51035, LOC221091, BSCL2, GNG3, HNRPUL2, TTC9C, ZBTB3, POLR2G,

TAF6L, LOC374395, MGC3196, NXF1, STX5, WDR74, SLC3A2, CHRM1, SLC22A6, SLC22A8, MGC34821, LOC387601, SLC22A10, SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, HRASLS3, DKFZP564J086, RTN3, LOC144097 V_0150_LC13257_Iafrate et al. (2004), V_4749_LC13256_Wong et al. (2007) q12.3-q13.111 63576522 63926635 RP11-424O11 RP11-64C3 4 0.350113 -0.581178576 LRP16, FLRT1, STIP1, URP2, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, KCNK4, ESRRA, HSPC152, PRDX5, CCDC88, RPS6KA4 V_4750_LC13267_Wong et al. (2007), V_4751_LC13267_Wong et al. (2007) q13.1

11 64590345 65562696 RP11-94G10 RP11-692F22 6 0.972351 -0.397739887CDCA5, ZFPL1, C11orf2, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, LOC387778, CAPN1, FLJ16331, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FKSG44, SCYL1, LTBP3, SSSCA1, FAM89B, KCNK7, MAP3K11, SIPA1, RELA, HTATIP, RNASEH2C, DKFZp761E198, OVOL1,

FLJ30934, CFL1, MUS81, EFEMP2, CTSW, FIBP, DIPA, FOSL1, C11orf68, DRAP1, TSGA10IP, SART1, MGC11102, BANF1, CST6, CATSPER1 q13.111 66535106 67174144 RP11-136D1 RP11-715F10 4 0.639038 -0.224276573 SYT12, RHOD, FBXL11, ADRBK1, ANKRD13D, SSH3, POLD4, CLCF1, RAD9A, PPP1CA, TBC1D10C, RPS6KB2, PTPRCAP, CORO1B, GPR152, CABP4, TMEM134, AIP, PITPNM1, CDK2AP2, CABP2, GSTP1, C11orf72, NDUFV1, NUDT8, TBX10, ACY3 V_4754_LC13285_Wong et al. (2007) q13.1-q13.2

11 79345663 110090050 RP11-375K23 RP11-436I18 277 30.744387 -1.82999252

MGC33846, PRCP, FLJ25416, RAB30, PCF11, ANKRD42, MDS025, DLG2, TMEM126B, TMEM126A, ZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5, TYR, NOX4, PSMAL, TRIM49, NAALAD2, CHORDC1, MTNR1B, SLC36A4, CCDC67, C11orf75, JOSD3, C11orf54, CRSP6, PANX1, LOC390243, GPR83, MRE11A, ANKRD49, FUT4, PIWIL4, AMOTL1, HSPC148, JMJD2D, SFRS2B, SESN3, FAM76B, CEP57, MTMR2, MAML2, CCDC82, JRKL, CNTN5, TMEM133, PGR, TRPC6,

ANGPTL5, KIAA1377, MGC13040, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, PDGFD, DDI1, CASP4, CASP5, CASP1, COP1, INCA, ICEBERG, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, LOC643923, SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10, LOC399947, RDX, FDX1, ARHGAP20

V_0152_LC13403_Iafrate et al. (2004), V_0154_LC13475_Iafrate et al. (2004), V_0155_LC13522_Iafrate et al. (2004), V_0156_LC13530_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006), V_4757_LC13394_Wong et al. (2007), V_4758_LC13426_Wong et al. (2007), V_4759_LC13448_Wong et al. (2007),

V_4760_LC13485_Wong et al. (2007), V_4761_LC13567_Wong et al. (2007), V_4991_LC13460_Wong et al. (2007) q14.1-q23.111 110878342 111740956 RP11-389C9 RP11-739O7 6 0.862614 -0.495734966 BTG4, FLJ46266, LAYN, SNF1LK2, PPP2R1B, ALG9, C11orf1, CRYAB, HSPB2, C11orf52, DIXDC1, DLAT, PIH1D2, C11orf57, TIMM8B, SDHD, IL18, TEX12, BCDO2, PTS q23.1

11 117709640 118758082 RP11-810D5 RP11-150H9 9 1.048442 -0.398557654CD3D, CD3G, UBE4A, ATP5L, MLL, FLJ11783, LOC143941, TMEM25, C11orf60, ARCN1, PHLDB1, TREH, DDX6, BLR1, BCL9L, UPK2, FOXR1, CCDC84, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX, DPAGT1, TMEM24, MIZF, ABCG4, NOD9, PDZD3,

LOC283152, CBL, MCAM, RNF26, C1QTNF5, MFRP, USP2 q23.3

11 120203053 125813499 RP11-601O17 RP11-328I6 46 5.610446 -0.729116025

GRIK4, LRRC35, TECTA, SC5DL, SORL1, BRCC2, STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN, VSIG2, ESAM, C11orf61, ROBO3, ROBO4, HEPACAM, HEPN1, CCDC15, SLC37A2, LOC219854, PKNOX2, FEZ1, EI24, STT3A, CHEK1, ACRV1, PATE, C11orf38, HYLS1, PUS3,

DDX25, CDON, RPUSD4, FAM118B, SRPR, FOXRED1, TIRAP, DCPS, ST3GAL4, KIRREL3 V_5037_LC13656_Wong et al. (2007) q23.3-q24.211 126418590 130410482 RP11-192A19 RP11-489M1 36 3.991892 -0.742180332 ETS1, FLI1, KCNJ1, KCNJ5, C11orf45, P53AIP1, RICS, BARX2, TMEM45B, NFRKB, PRDM10, APLP2, ST14, BTBD15, ADAMTS8, ADAMTS15, C11orf44, SNX19 q24.2-q2511 133372260 133706184 RP11-107G18 RP11-149G17 4 0.333924 -0.531757614 JAM3, hCAP-D3, VPS26B, THYN1, ACAD8, GLB1L3 V_4764_LC13705_Wong et al. (2007) q2512 16595 1871569 RP13-492B24 RP11-21K20 18 1.854974 -0.456688407 IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2 V_4765_LC13757_Wong et al. (2007) p13.33

12 6144898 6911730 RP11-800A22 RP11-789M14 8 0.766832 -0.37073419CD9, PLEKHG6, TNFRSF1A, SCNN1A, LTBR, CD27, TAPBPL, VAMP1, MRPL51, CNAP1, GAPDH, HOM-TES-103, NOL1, CHD4, GPR92, ACRBP, ING4, ZNF384, C12orf53, COPS7A, MLF2, PTMS, LAG3, CD4, GPR162, LEPREL2, GNB3, CDCA3, USP5, TPI1, SPSB2, LRRC23,

ENO2, ATN1 p13.3112 27118051 27749639 RP11-564A17 RP11-371M24 6 0.631588 -0.593647815 LOC728858, STK38L, ARNTL2, PPFIBP1, REP15 p11.23-p11.2213 17918020 21487591 RP11-77P19 RP11-474A17 28 3.569571 -0.948007342 TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9 V_0167_LC14662_Iafrate et al. (2004), V_4797_LC14674_Wong et al. (2007) q11-q12.11

13 47624175 110766874 RP11-795F23 RP11-412K14 522 63.142699 -0.920382271

ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7, FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70, ATP7B, LOC440138, UTP14C, NEK5, NEK3, THSD1, VPS36, CKAP2, LOC144983, SUGT1, LECT1, PCDH8, OLFM4, FLJ40296, PCDH17, DIAPH3, TDRD3, PCDH20, PCDH9, KLHL1, DACH1, LOC440145, FLJ22624, KIAA1008, C13orf24, KLF5, KLF12, TBC1D4, COMMD6, UCHL3, LMO7, KCTD12, CLN5, FBXL3, MYCBP2, SCEL,

FLJ30046, EDNRB, POU4F1, C13orf7, C13orf10, NDFIP2, SPRY2, SLITRK1, SLITRK6, SLITRK5, GPC5, GPC6, DCT, TGDS, GPR180, SOX21, ABCC4, CLDN10, DZIP1, DNAJC3, UGCGL2, HS6ST3, OXGR1, MBNL2, RAP2A, RANBP5, FARP1, RNF113B, STK24, SLC15A1, DOCK9, PHGDHL1, GPR18, EBI2, TM9SF2, CLYBL, ZIC5, ZIC2, PCCA, TMTC4, VGCNL1, ITGBL1, FGF14, TPP2, LOC196541, LOC93081, KDELC1, BIVM, ERCC5, SLC10A2, DAOA, EFNB2, FLJ10154, LOC728215, LIG4, ABHD13, TNFSF13B, MYR8, IRS2, COL4A1, COL4A2,

RAB20, FLJ10769, FLJ12118, ING1, ANKRD10, ARHGEF7

V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007),


V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) q14.2-q34

15 18276592 67527351 RP11-607H20 RP11-72H3 444 49.250759 -1.676561706

LOC283755, POTE15, OR4M2, OR4N4, LOC650137, TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C,

GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76,

FRMD5, CASC4, CTDSPL2, EIF3S1, KIAA1840, B2M, RNF36, C15orf43, SORD, DUOX2, DUOXA2, NIP, DUOX1, SHF, SLC28A2, GATM, SPA

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _al. (2004), V_0775_LC16090_Sharp et al. (2005), V_0776_LC16090_Sharp et al. (2005), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005),


V_2182_LC16090_Locke et al. (2006), V_2183_LC16090_Locke et al. (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006),

V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4861_LC16090_Wong et al. (2007), V_4862_LC16090_Wong et al. (2007), V_4863_LC16090_Wong et al. (2007), V_4864_LC16090_Wong et al. (2007), V_4865_LC16090_Wong et al. (2007), V_4866_ q11.1-q23

15 68678143 70600888 RP11-730A20 RP11-660B20 18 1.922745 -0.499164014 UACA, LARP6, THAP10, LRRC49, THSD4, NR2E3, MYO9A, SENP8, GRAMD2, PKM2, PARP6, BRUNOL6, HEXA, FLJ27523, ARIH1 V_2194_LC16374_Locke et al. (2006), V_2195_LC16389_Locke et al. (2006) q23-q24.115 72775397 73223688 RP11-195A1 RP11-220C14 3 0.448291 -0.288690532 LSM16, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, SCAMP2, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC q24.1-q24.215 73913633 75427942 RP11-454F3 CTD-2143N11 9 1.514309 -0.397710326 UBE2Q2, FBXO22, NRG4, C15orf27, ETFA, ISL2, ZNF291, RCN2, PSTPIP1, TSPAN3 V_4905_LC16412_Wong et al. (2007) q24.2-q24.3

15 76011112 86032632 RP11-323B14 RP11-113C11 80 10.02152 -0.661133206

TBC1D2B, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, LOC123688, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, MORF4L1, CTSH, RASGRF1, TMED3, KIAA1024, MTHFS, C15orf37, BCL2A1, ZA20D3, FAH, ARNT2, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5, TMC3, RKHD3, EFTUD1, DKFZp666G057, FLJ22795, RPS17, CPEB1, AP3B2, FSD2, WHDC1, HOMER2, FAM103A1, C15orf40, BTBD1, TM6SF1, HDGFRP3, BNC1, SH3GL3, ADAMTSL3, KIAA1920, ZSCAN2, WDR73, NMB, SEC11L1, ZNF592, ALPK3, SLC28A1,

PDE8A, AKAP13, KLHL25, FLJ32310

V_0190_LC16450_Iafrate et al. (2004), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006),

V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4907_LC16456_Wong et al. (2007), V_4908_LC16467_Wong et al. (2007) q24.3-q25.3

15 86940103 100260946 RP11-540D22 RP11-95F11 116 13.320843 -0.828619057

ISG20L1, ISG20, ACAN, HAPLN3, MFGE8, ABHD2, RLBP1, KIAA1794, POLG, RHCG, C15orf42, KIF7, PLIN, PEX11A, LOC56964, MESP1, MESP2, ANPEP, AP3S2, C15orf38, ZNF710, IDH2, SEMA4B, CIB1, LOC390637, TTLL13, NGRN, MGC75360, IQGAP1, CRTC3, BLM, FURIN, FES, MAN2A2, HDDC3, UNC45A, RCCD1, PRC1, VPS33B, SV2B, SLCO3A1, ST8SIA2, C15orf32, LOC400451, CHD2, RGMA, MCTP2, NR2F2, SPATA8, ARRDC4, FLJ39743, IGF1R, DMN, TTC23, LRRC28, MEF2A, LYSMD4, LOC400464, ADAMTS17, FLJ42289, LASS3, LINS1,

ASB7, LOC440313, ALDH1A3, LRRK1, CHSY1, SELS, SNRPA1, PCSK6, TM2D3, TARSL2, OR4F6, OR4F15V_0192_LC16541_Iafrate et al. (2004), V_0193_LC16579_Iafrate et al. (2004), V_2201_LC16579_Locke et al. (2006), V_2202_LC16579_Locke et al. (2006), V_4909_LC16491_Wong et al.

(2007), V_4910_LC16491_Wong et al. (2007), V_4911_LC16537_Wong et al. (2007) q26.1-q26.3

16 28259571 30034396 RP13-945E15 RP11-796I19 19 1.774825 -0.484713378CLN3, APOB48R, IL27, NUPR1, LOC112869, SULT1A2, SULT1A1, LOC390688, EIF3S8, LOC440350, ATXN2L, TUFM, SH2B, ATP2A1, RABEP2, CD19, NFATC2IP, SPIN1, LAT, SPN, QPRT, C16orf54, MAZ, PRRT2, C16orf53, MVP, CDIPT, SEZ6L2, ASPHD1, KCTD13,

LOC124446, TAOK2, HIRIP3, FLJ90652, DOC2A, FAM57B, ALDOA, PPP4C, TBX6, YPEL3, GDPD3, MAPK3 V_4937_LC16802_Wong et al. (2007), V_4938_LC16802_Wong et al. (2007), V_4939_LC16808_Wong et al. (2007), V_4940_LC16814_Wong et al. (2007) p11.216 45058798 47235945 RP11-46D6 RP11-184M24 21 2.177147 -0.517164534 FLJ43980, SHCBP1, VPS35, ORC6L, MLCK, LOC388272, GPT2, DNAJA2, NETO2, ITFG1, PHKB, ABCC12, ABCC11, LONPL, SIAH1, N4BP1 q11.2-q12.116 48464093 49113421 RP11-38D13 RP11-778B20 6 0.649328 -0.57295011 C16orf69, FLJ20718, PAPD5, ADCY7, BRD7 q12.116 49649051 52744468 RP11-80B1 RP11-571I10 49 3.095417 -0.648820684 SALL1, TNRC9, CHD9, RBL2, FTS, KIAA1005, FTO V_0198_LC16863_Iafrate et al. (2004), V_4954_LC16857_Wong et al. (2007), V_4955_LC16867_Wong et al. (2007) q12.1-q12.2

16 54545810 63565330 RP11-461O7 RP11-275K9 92 9.01952 -1.103305766GNAO1, AMFR, NUDT21, OGFOD1, BBS2, MT4, MT3, MT2A, MT1E, MT1M, MT1A, MT1B, MT1F, MT1G, MT1H, MTE, MT1X, NUP93, SLC12A3, HERPUD1, CETP, NOD27, CPNE2, NIP30, RSPRY1, ARL2BP, TM4SF11, CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4,

MGC10992, GPR114, GPR56, GPR97, CCDC135, KATNB1, KIFC3, CNGB1, TEPP, ZNF319, C16orf57, MMP15, GTL3, CSNK2A2, HSPC065, Klkbl4, FLJ13912, NDRG4, SETD6, CNOT1, FLJ10815, GOT2, CDH8, CDH11 V_4957_LC16881_Wong et al. (2007), V_4958_LC16891_Wong et al. (2007), V_4959_LC16914_Wong et al. (2007), V_4960_LC16916_Wong et al. (2007) q13-q21

16 64949815 69356635 RP11-290E4 RP11-309L8 42 4.40682 -0.594834564

CDH5, TK2, CKLF, CMTM1, CMTM2, CMTM3, CMTM4, DYNC1LI2, APPBP1, CA7, PDP2, CDH16, RRAD, FAM96B, CES2, FLJ21736, FLJ37464, CBFB, LIN10, MGC4655, TRADD, FBXL8, HSF4, NOL3, LOC653319, LOC283849, E2F4, ELMO3, LRRC29, HSPC171, FHOD1, SLC9A5, PLEKHG4, LRRC36, CGI-38, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, FAM65A, CTCF, RLTPR, ACD, PARD6A, C16orf48, LOC388284, MGC11335, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, RCD-8, UNQ2446, PSKH1, CTRL, PSMB10, LCAT, SLC12A4, DPEP3,

DPEP2, DDX28, DUS2L, NFATC3, RBM35B, LYPLA3, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90, CDH3, CDH1, FLJ12331, HAS3, CTF8, CIRH1A, SNTB2, VPS4A, COG8, PDF, NIP7, TMED6, TERF2, CYB5B, NFAT5, NQO1, PSMD8BP1, WWP2, PDPR, MGC34761, EXOSC6, AARS, DDX19B, DDX19A, ST3GAL2, FUK, COG4, SF3B3, MGC34647, LOC92154, VAC14

V_0797_LC16959_Sharp et al. (2005), V_2216_LC16959_Locke et al. (2006), V_4962_LC16939_Wong et al. (2007), V_4963_LC16959_Wong et al. (2007), V_4964_LC16959_Wong et al. (2007), V_4965_LC16963_Wong et al. (2007) q21-q22.1

16 69727407 76899769 RP11-204A24 RP11-72G1 76 7.172362 -0.745925941HYDIN, FLJ11171, CALB2, ZNF23, ZNF19, CHST4, TAT, MARVELD3, PHLPPL, AP1G1, LOC55565, KIAA0174, DHODH, HP, HPR, TXNL4B, DHX38, PMFBP1, ATBF1, PSMD7, LOC440348, LOC348174, LOC497190, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1,

CTRB2, CTRB1, BCAR1, CFDP1, LOC124491, CHST6, CHST5, FLJ22167, GABARAPL2, ADAT1, KARS, TERF2IP, CNTNAP4, MON1B, ADAMTS18, KIAA1576, CLEC3A, WWOX V_0678_LC16967_Sharp et al. (2005), V_2043_LC16967_Locke et al. (2006), V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007) q22.2-q23.116 79060755 80809656 RP11-455P18 RP11-525L24 33 1.748901 -0.768910629 DYNLRB2, CDYL2, C16orf61, C16orf60, ASCIZ, C16orf46, GCSH, PKD1L2, BCMO1, GAN, CMIP, PLCG2, HSPC105, HSD17B2, MPHOSPH6 V_4968_LC17023_Wong et al. (2007) q23.2-q23.316 87361164 87538812 RP11-830F9 RP11-370B20 3 0.177648 -0.520679939 CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3 V_4975_LC17076_Wong et al. (2007), V_4976_LC17076_Wong et al. (2007) q24.3

17 52192 9362398 CTD-2326F1 RP11-43O5 101 9.310206 -0.651192161

SMG6, SRR, TSR1, RUTBC1, MNT, LOC284009, METT10D, PAFAH1B1, KIAA0664, GARNL4, OR1D4, OR1D5, OR1D2, OR1G1, OR1A2, OR1A1, OR3A2, OR3A1, OR3A4, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3, TRPV1, CARKL, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, P2RX1, ATP2A3, ZZEF1, CYB5D2, ANKFY1, UBE2G1, MGC29671, MYBBP1A, GGT6, FLJ42461, ALOX15, PELP1, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, LOC388323, PSMB6, PLD2, MINK1, CHRNE, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, UNQ5783, RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1, KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1, ALOX12, MGC71993, C17orf49, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2, PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, TMEM95, TNK1, PLSCR3, C17orf61,

NLGN2, C17orf83, C17orf74, TMEM102, FGF11, CHRNB1, ZBTB4, POLR2A, TNFSF12, TNFSF12-TNFS, TNFSF13, SENP3, EIF4A1, CD68, M



17 33267468 34955272 CTD-2344A6 RP11-85O18 16 1.687804 -0.369207141 TBC1D3B, TBC1D3, MRPL45, GPR179, SOCS7, SNIP, MLLT6, PCGF2, PSMB3, PIP5K2B, CCDC49, LOC388381, RPL23, LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, FBXL20, PPARBP, CRKRSV_2224_LC17457_Locke et al. (2006), V_5002_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al. (2007), V_5006_LC17473_Wong et al.

(2007) q1217 35262985 35997410 RP11-32H6 RP11-51J19 8 0.734425 -0.215268073 ZNFN1A3, ZPBP2, GSDML, ORMDL3, GSDM1, PSMD3, CSF3, THRAP4, THRA, NR1D1, CASC3, RAPGEFL1, WIRE, CDC6, RARA, GJC1, TOP2A, IGFBP4, TNS4, CCR7 q12-q21.2

17 36732410 43602175 RP11-639G19 RP11-475C18 79 6.869765 -0.52696682

GCN5L2, HSPB9, RAB5C, KCNH4, HCRT, LGP1, STAT5B, STAT5A, STAT3, PTRF, ATP6V0A1, NAGLU, HSD17B1, COASY, MLX, PSMC3IP, LOC162427, TUBG1, TUBG2, PLEKHH3, CCR10, CNTNAP1, EZH1, RAMP2, VPS25, WNK4, CCDC56, CNTD, BECN1, PSME3, AOC2, AOC3, G6PC, AARSD1, RUNDC1, RPL27, IFI35, VAT1, RND2, BRCA1, NBR1, TMEM106A, ARL4D, DHX8, ETV4, MEOX1, SOST, DUSP3, MPP3, CD300LG, MPP2, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, C17orf53, ASB16, C17orf65, TMUB2, UBTF, SLC4A1, RPIP8,CGI-69, GRN, ITGA2B, KIAA0553, FZD2, FLJ35848, CCDC43, DBF4B, ADAM11, GJA7, HIGD1B, EFTUD2, LOC388389, GFAP, LOC146909, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, FMNL1, C17orf46, MAP3K14, ARHGAP27, LOC201175, PLEKHM1, C17orf69, CRHR1, IMP5, MAPT, STH, KIAA1267, LRRC37A, LOC474170, ARL17, NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1,

CBX1, SNX11, SKAP1

V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004), V_0207_LC17522_Iafrate et al. (2004), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006),

V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006), V_2229_LC17530_Locke et al. (2006), V_5007_LC17508_Wong et al. (2007), V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et al. (2007), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007), V_5012_LC17522_Wong et al. (2007),


17 43846848 46380311 RP11-420B16 RP11-506D12 35 2.533463 -0.261280476SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13, TTLL6, CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB, NGFR, NXPH3, SPOP, SLC35B1, LOC81558, MYST2,

TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1 V_0208_LC17538_Iafrate et al. (2004), V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007) q21.32-q21.33

17 69598059 78398677 RP11-464L2 RP11-424C10 93 8.800618 -0.623613027

NT5C, HN1, SUMO2, NUP85, GGA3, MRPS7, MIF4GD, SLC25A19, GRB2, KIAA0195, CASKIN2, TSEN54, LLGL2, RECQL5, SAP30BP, ITGB4, GALK1, H3F3B, ZC3H5, UNC13D, WBP2, TRIM47, TRIM65, MRPL38, FBF1, ACOX1, CDK3, EVPL, SRP68, GALR2, LGICZ1, EXOC7, FOXJ1, RNF157, FAM100B, QRICH2, PRPSAP1, SPHK1, UBE2O, AANAT, RHBDF2, CYGB, PRCD, ST6GALNAC2, ST6GALNAC1, MXRA7, PTDSR, LOC124512, SFRS2, ET, MGAT5B, SEC14L1, FLJ45079, TNRC6C, TMC6, TMC8, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17, DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713, ENPP7, CBX2, CBX8, CBX4, TBC1D16, GAA, DDX48, CARD14, SGSH, SLC26A11, KIAA1618, C17orf27, FLJ35220, NPTX1, KIAA1303, CHMP6, BAIAP2, AATK, AZI1, C17orf56, MGC15523, C17orf55, TMEM105, BAHCC1, ACTG1, FSCN2, C17orf70, NPLOC4, TSPAN10, PDE6G, LOC339229, ARL16, HGS, MRPL12, SLC25A10, DYSFIP1, P4HB, ARHGDIA, THOC4, ANAPC11, NPB, PCYT2, SIRT7, MAFG, PYCR1, NOTUM, ASPSCR1, STRA13,

LRRC45, RAC3, DCXR, RFNG, GPS1, DUS1L, FASN, CCDC57, SLC16A3, CSNK1D, CD7, SECTM1, FLJ35767, UTS2R, FLJ22222, HEXDC,

V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et al. (2006), V_4327_LC17763_Wong et al. (2007), V_5029_LC17706_Wong et al. (2007), V_5030_LC17713_Wong et al. (2007),



18 35489798 73776516 RP11-25C13 RP11-118I2 362 38.286718 -0.841198532

PIK3C3, RIT2, SYT4, SETBP1, SLC14A2, SLC14A1, CD33L3, KIAA1632, PSTPIP2, ATP5A1, CCDC5, C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, TCEB3C, TCEB3B, HDHD2, IER3IP1, SMAD2, ZBTB7C, KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532,

SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1, FBXO15, C18orf55, CYB5A, C18orf51, CNDP2, CNDP1, LOC400657, ZNF407, ZADH2, TSHZ1, LOC284274, ZNF236, MBP, GALR1

V_0217_LC18181_Iafrate et al. (2004), V_0218_LC18301_Iafrate et al. (2004), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007),

V_5061_LC18463_Wong et al. (2007), V_5062_LC18530_Wong et al. (2007) q12.2-q2318 74335054 76098439 RP11-296A2 RP11-565D23 15 1.763385 -0.839794259 SALL3, ATP9B, NFATC1, CTDP1, KCNG2, PQLC1, TXNL4A, C18orf22, KIAA0863, PARD6G V_5064_LC18537_Wong et al. (2007) q23

19 75953 8709106 RP11-505K21 RP11-1077G12 79 8.633153 -0.546718315

C19orf6, CNN2, ABCA7, HMHA1, POLR2E, GPX4, KIAA0963, STK11, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, LOC401019, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5, RKHD1, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4, LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3,

SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R, C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK, KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2, KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30, FEM1A, TICAM1, M6PRBP1,

ARRDC5, C19orf31, UHRF1, JMJD2B, PTPRS, ZNRF4, PLAC2, SAFB2, SAFB, P117, SCDR10, RPL36, PRSS15, TMEM146, MGC24975, DUS




19 8751188 20005191 RP13-622L9 RP11-4K8 119 11.254003 -0.627150054

PPAN, PPAN-P2RY11, P2RY11, EIF3S4, DNMT1, EDG5, MRPL4, ICAM1, ICAM4, ICAM5, MGC19604, RAVER1, ICAM3, TYK2, CDC37, PDE4A, KEAP1, EDG8, ATG4D, FLJ12949, CDKN2D, AP1M2, SLC44A2, ILF3, QTRT1, DNM2, TMED1, CARM1, YIPF2, LOC90580, SMARCA4, LDLR, SPBC24, ANKRD25, DOCK6, LOC55908, TSPAN16, RAB3D, UNQ501, LOC126075, LPPR2, FLJ35119, EPOR, RGL3, MGC20983, PRKCSH, ELAVL3, ZNF653, SITPEC, CNN1, ELOF1, ACP5, ZNF627, LOC401898, HSZFP36, ZNF441, ZNF491, ZNF439, ZNF69, ZNF700,

ZNF440L, ZNF433, LOC729747, ZNF20, ZNF625, ZNF136, ZNF44, ZNF563, ZNF442, ZNF443, ZNF709, ZNF564, ZNF490, FLJ90396, MAN2B1, C19orf56, MORG1, DHPS, FBXW9, TNPO2, MGC2803, ASNA1, BEST2, HOOK2, JUNB, PRDX2, RNASEH2A, RTBDN, MAST1, DNASE2, KLF1, GCDH, FARSA, CALR, RAD23A, GADD45GIP1, DAND5, NFIX, LYL1, TRMT1, BTBD14B, STX10, IER2, CACNA1A, MGC10471, MGC3207, HSPC023, ZSWIM4, MGC11271, CC2D1A, FLJ23447, LOC90379, RFX1, RLN3, IL27RA, SAMD1, PRKACA, ASF1B, LPHN1,

CD97, DDX39, PKN1, PTGER1, GIPC1, DNAJB1, GPSN2, NDUFB7, FLJ45910, EMR3, ZNF333, EMR2, OR7C1, OR7A5, OR7A10, OR7A17, O

V_0220_LC18794_Iafrate et al. (2004), V_2240_LC18794_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007),

V_5087_LC18821_Wong et al. (2007), V_5088_LC18841_Wong et al. (2007), V_5089_LC18844_Wong et al. (2007), V_5090_LC18847_Wong et al. (2007), V_5091_LC18881_Wong et al. (2007), V_5092_LC18883_Wong et al. (2007), V_5093_LC18883_Wong et al. (2007) p13.2-p12

19 37157827 47956951 RP11-354M22 RP11-653D16 122 10.799124 -0.43858971

ZNF599, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467, ZD52F10, SBSN, GAPDHS, NIFIE14, ATP4A, MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6, LOC148137, SNX26, PRODH2, NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565, ZNF146, KIAA1559,

ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345, DKFZp779O175, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, EIF3S12, ACTN4, CAPN12, LGALS7, LOC653499, LGALS4, ECH1, HNRPL, FLJ45909, SIRT2, NFKBIB, SARS2, MRPS12, FBXO17, FBXO27, FLJ16165,

PAK4, LOC342897, SYCN, IL28B, IL28A, IL29, GMFG, SAMD4B, PAF1, IXL, ZFP36, PLEKHG2, RPS16, SUPT5H, TIMM50, DLL3, SELV, EID-V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007), V_5099_LC18991_Wong et al. (2007), V_5100_LC19016_Wong et al. (2007), V_5101_LC19026_Wong et al.

(2007) q13.11-q13.31

19 48468988 63770533 RP11-160A19 CTD-2575K21 207 15.301545 -0.533944273

CD177, TEX101, LYPD3, PHLDB3, ETHE1, ZNF575, XRCC1, IRGQ, ZNF576, C19orf37, IGSF4C, PLAUR, IRGC, C19orf61, KCNN4, LYPD5, ZNF404, ZNF45, ZNF221, ZNF155, ZNF230, ZNF222, ZNF223, ZNF284, ZNF224, ZNF225, ZNF234, ZNF226, ZNF227, ZNF233, ZNF235, ZNF228, ZNF285A, ZNF229, ZNF180, PVR, CEACAM19, CEACAM16, BCL3, CBLC, BCAM, PVRL2, TOMM40, APOE, APOC1, APOC4, APOC2, CLPTM1, RELB, SFRS16, ZNF342, GEMIN7, NKPD1, TRAPPC6A, BLOC1S3, XTP7, MARK4, CKM, KLC3, ERCC2, PPP1R13L,

CD3EAP, ERCC1, FOSB, RTN2, FLJ40125, VASP, OPA3, GPR4, EML2, GIPR, SNRPD2, QPCTL, FBXO46, SIX5, DMPK, DMWD, RSHL1, SYMPK, FOXA3, IRF2BP1, LOC339344, NANOS2, NOVA2, LOC729440, PGLYRP1, IGFL4, IGFL3, IGFL2, IGFL1, HIF3A, PPP5C, CCDC8, FLJ10781, LOC400707, CALM3, PTGIR, GNG8, MGC15476, PRKD2, STRN4, FKRP, SLC1A5, AP2S1, GRLF1, NPAS1, FLJ20512, C19orf7, SAE1, BBC3, CCDC9, C5AR1, GPR77, DHX34, MEIS3, SLC8A2, KPTN, NAPA, GLTSCR1, EHD2, GLTSCR2, SEPW1, TPRX1, CRX, SULT2A1, ELSPBP1, CABP5, PLA2G4C, LIG1, LOC374920, CARD8, ZNF114, FLJ32926, EMP3, FLJ10922, SYNGR4, KDELR1, GRIN2D, GRWD1, KCNJ14, PSCD2, LMTK3, SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, LOC126147, FUT2, FLJ36070, RASIP1,

IZUMO1, FUT1, FGF21, BCAT2, DHRS10, PLEKHA4, PPP1R15A, TULP2, NUCB1, DHDH, BAX, FTL, GYS1, RUVBL2, LHB, CGB, CGB2, CG

V_0221_LC19039_Iafrate et al. (2004), V_0809_LC19144_Sharp et al. (2005), V_2244_LC19026_Locke et al. (2006), V_2245_LC19036_Locke et al. (2006), V_2246_LC19081_Locke et al. (2006), V_2247_LC19092_Locke et al. (2006), V_2248_LC19144_Locke et al. (2006), V_5103_LC19048_Wong et al. (2007), V_5104_LC19056_Wong et al. (2007),


V_5114_LC19090_Wong et al. (2007), V_5115_LC19131_Wong et al. (2007), V_5116_LC19144_Wong et al. (2007), V_5117_LC19144_Wong et al. (2007), V_5118_LC19144_Wong et al. (2007), V_5119_LC19144_Wong et al. (2007) q13.31-q13.43

20 37210 784494 CTD-2506E2 CTD-2135F24 8 0.747284 -0.405833801 DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55 V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007) p13

20 2526915 13238138 RP11-784K18 RP11-696G12 105 10.711223 -0.762728906

TMC2, NOL5A, IDH3B, CPXM, C20orf141, FAM113A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5, FLJ13149, ProSAPiP1, C20orf116, ITPA, SLC4A11, ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA, PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2, PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2, HAO1, TXNDC13, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, C20orf94,

JAG1, BTBD3, SPTLC2LV_5121_LC19253_Wong et al. (2007), V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007), V_5125_LC19365_Wong et al.

(2007) p13-p12.1

20 14358153 21048676 RP11-280O9 RP11-27G16 58 6.690523 -0.847123229 C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179, SNX5, C20orf72, OVOL2, CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, C20orf26, INSM1, C20orf74 V_0224_LC19418_Iafrate et al. (2004), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007) p12.1-p11.2322 27034863 27727963 RP11-579K6 RP11-652D6 5 0.6931 -0.538594549 CHEK2, HSC20, FLJ33814, XBP1 q12.1

22 35061869 38135769 RP11-108P21 RP11-630N12 29 3.0739 -0.696980633

MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB, NCF4, CSF2RB, MGC35206, TST, MPST, KCTD17, TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2, PSCD4, KIAA1904, MFNG, CARD10, CDC42EP1, LGALS2, GGA1, SH3BP1, PDXP, LGALS1, MGC3731, TRIOBP, H1F0, GCAT, GALR3, LOC129138, EIF3S6IP, MICAL-L1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF, C22orf5, CSNK1E, KCNJ4, KDELR3, DDX17, DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B,

APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7, PDGFB, RPL3, SYNGR1, MAP3K7IP1V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5183_LC20479_Wong et al. (2007), V_5184_LC20492_Wong et al. (2007), V_5185_LC20500_Wong et al.

(2007), V_5186_LC20500_Wong et al. (2007) q12.3-q13.1

22 39849237 41820131 RP11-391O13 RP11-786O6 19 1.970894 -0.330996266EP300, L3MBTL2, RANGAP1, ZC3H7B, TEF, TOB2, PHF5A, ACO2, POLR3H, CSDC2, PMM1, D15Wsu75e, XRCC6, NHP2L1, FLJ23584, MGC40042, FLJ22349, SREBF2, TNFRSF13C, C22orf18, MGC26816, NAGA, FAM109B, LOC91689, NDUFA6, CYP2D6, TCF20, NFAM1,

SERHL, CGI-96, SERHL2, POLDIP3, CYB5R3, A4GALT, ARFGAP3, PACSIN2, TTLL1 V_5188_LC20524_Wong et al. (2007), V_5189_LC20524_Wong et al. (2007) q13.222 42472505 43290473 RP11-80L20 RP11-41J1 8 0.817968 -0.427133806 FLJ23588, SULT4A1, PNPLA5, ADPN, SAMM50, PARVB, PARVG, LDOC1L q13.2-q13.3123 550000 3119788 RP13-76L22 RP13-497D16 8 2.569788 -0.615275345 XG, GYG2, ARSD, ARSE, ARSH, ARSF V_0821_LC20656_Sharp et al. (2005) p22.3323 4041837 5902830 RP11-465A24 RP11-769N24 16 1.860993 -0.616786859 NLGN4X p22.33-p22.32

23 10244056 17398738 RP11-390N14 RP11-80N6 63 7.154682 -1.373056661MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2,

S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS p22.2-p22.13

23 20165576 38735436 RP11-304L10 RP11-406O21 170 18.56986 -0.836625023RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3,

MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1 V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004) p22.12-p11.423 40348166 46795584 RP11-776A11 RP11-48J14 59 6.447418 -0.722436947 ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16 p11.4-p11.323 51043896 52085986 RP11-17K17 RP11-363G10 9 1.04209 -0.765580461 NUDT10, LOC340602, NUDT11, GSPT2, MAGED1, MAGED4, LOC401589 p11.2223 53822764 58037917 RP11-108L22 RP11-605K15 40 4.215153 -0.642256915 PHF8, CXorf17, WNK3, RP1-112K5.2, FGD1, GNL3L, ITIH5L, MAGED2, TRO, PFKFB1, APEX2, ALAS2, PAGE2B, PAGE2, FAM104B, PAGE5, PAGE3, MAGEH1, USP51, FOXR2, RRAGB, KLF8, UBQLN2, SPIN3, SPIN-2, SPIN2, FLJ31204, ZXDB, ZXDA V_0243_LC20866_Iafrate et al. (2004) p11.22-p11.123 58334919 67807729 RP11-96A5 RP11-567A13 65 9.47281 -0.96788756 LOC139886, ARHGEF9, FAM123B, ASB12, MTMR8, KIAA1166, ZC3H12B, LAS1L, MSN, VSIG4, HEPH, EDA2R, AR, OPHN1, YIPF6, STARD8 V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) p11.1-q13.123 68425429 70195537 RP11-761G17 RP11-320L13 16 1.770108 -0.580951199 TMEM28, EDA, DGAT2L4, OTUD6A, IGBP1, DGAT2L6, DGAT2L3, P2RY4, ARR3, RAB41, PDZD11, KIF4A, GDPD2, DLG3, TEX11, SLC7A3 q13.1

23 72114497 110183160 RP11-74A13 RP11-812J15 333 38.068663 -0.888331229

LOC645974, LOC340529, NAP1L2, CDX4, CHIC1, ZCCHC13, SLC16A2, RNF12, KIAA2022, ABCB7, UPRT, ZDHHC15, MAGEE2, CXorf26, MAGEE1, FGF16, ATRX, DKFZp564K142, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, ZCCHC5, GPR23, P2RY10, GPR174, ITM2A, TBX22, FAM46D, BRWD3, NSBP1, SH3BGRL, POU3F4, CYLC1, RPS6KA6, CXorf43, FAM121A, SATL1, ZNF6, POF1B, CHM, DACH2, KLHL4, CPXCR1, TGIF2LX, PABPC5, PCDH11X, NAP1L3, RP1-32F7.2, DIAPH2, RPA4, PCDH19, TNMD, TSPAN6, SRPX2, SYTL4, CSTF2,

NOX1, XKRX, ARL13A, CXorf34, TMEM35, FSHPRH1, DRP2, TAF7L, TIMM8A, BTK, RPL36A, GLA, HNRPH2, ARMCX1, ARMCX6, ARMCX3, ARMCX2, NXF5, ZMAT1, TCEAL2, TCEAL6, NGFRAP1L1, NXF2, TMSL8, ARMCX5, GPRASP1, GPRASP2, BHLHB9, LOC286526, BEX1, NXF3, BEXL1, TCEAL8, TCEAL5, BEX2, TCEAL7, WBP5, NGFRAP1, RAB40A, TCEAL4, TCEAL3, TCEAL1, MORF4L2, TMEM31, PLP1, RAB9B, MGC39900, H2BFWT, MCART6, CXorf39, ESX1, IL1RAPL2, TEX13A, NRK, SERPINA7, MUM1L1, CXorf57, RNF128, FLJ20298,

CLDN2, MORC4, FLJ11016, FLJ20130, CXorf41, PRPS1, TSC22D3, MID2, TEX13B, VSIG1, PSMD10, ATG4A, COL4A6, COL4A5, IRS4, GUCY2F, NXT2, KCNE1L, ACSL4, RP13-360B22., AMMECR1, RGAG1, CHRDL1V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et

al. (2004), V_0249_LC20974_Iafrate et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004) q13.1-q22.323 112168775 117839057 RP11-385O17 RP11-351E4 51 5.670282 -0.758830583 HTR2C, IL13RA2, LRCH2, LUZP4, PLS3, AGTR2, SLC6A14, LOC203413, KLHL13, WDR44, DOCK11, IL13RA1 q23-q24

23 119443231 147395967 RP11-423F7 RP11-540P2 297 27.952736 -0.973583639

LAMP2, CUL4B, MCTS1, C1GALT1C1, CT47.7, CT47.1, CT47.5, CT47.10, CT47.11, CT47.2, CT47.3, CT47.4, CT47.8, CT47.9, CT47.6, GLUD2, GRIA3, THOC2, BIRC4, STAG2, SH2D1A, ODZ1, LOC340578, WDR40B, ACTRT1, SMARCA1, OCRL, APLN, XPNPEP2, CXorf9, ZDHHC9, UTP14A, BCORL1, ELF4, PDCD8, RAB33A, SUHW3, SLC25A14, GPR119, RBMX2, COVA1, FLJ30058, IGSF1, OR13H1, MST4, LOC90167, RAP2C, MBNL3, HS6ST2, USP26, TFDP3, GPC4, GPC3, PHF6, HPRT1, PLAC1, LOC159090, FAM122C, MOSPD1, FAM127C,

FAM127A, FAM127B, CXorf48, ZNF75, ZNF449, DDX26B, CT45-1, CT45-2, CT45-3, CT45-4, CT45-5, CT45-6, SAGE1, TMEM32, SLC9A6, FHL1, GPR112, BRS3, HTATSF1, VGLL1, CD40LG, ARHGEF6, RBMX, GPR101, ZIC3, FGF13, F9, MCF2, ATP11C, LOC347487, SOX3, CDR1, SPANXB1, SPANXB2, LDOC1, SPANXC, SPANXA2, SPANXA1, SPANXD, SPANXE, MAGEC3, MAGEC1, MAGEC2, SPANX-N4, SPANX-N3, SLITRK4, SPANX-N2, UBE2NL, SPANXN1, SLITRK2, CXorf1, FMR1, FMR1NB, AFF2

V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. (2004), V_0255_LC21142_Iafrate et al. (2004), V_0826_LC21120_Sharp et al. (2005), V_0827_LC21138_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2280_LC21120_Locke et al. (2006), V_2281_LC21120_Locke et al. (2006),

V_2282_LC21138_Locke et al. (2006) q24-q2823 150058204 150602962 CTD-2012F6 RP11-484M11 4 0.544758 -0.552024729 GPR50, LOC203547, PASD1 q2823 150888783 151701499 RP11-269E9 RP11-793M20 10 0.812716 -0.665844667 GABRE, MAGEA5, MAGEA10, GABRA3, GABRQ, MAGEA6, MAGEA12, CSAG1, MAGEA2, MAGEA2B, CSAG3A, CSAG2, MAGEA3 q28

23 152462709 154906914 RP11-437K1 RP11-1245L19 29 2.444205 -0.783872442ATP2B3, FAM58A, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1,

TAZ, ATP6AP1, GDI1, FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, CTAG1A, CTAG1B, CTAG2, GAB3, DKC1, MPP1, F8, FUNDC2, MTCP1, CXorf53, VBP1, RAB39B, CLIC2, F8A1, F8A2, F8A3, H2AFB1, H2AFB3, H2AFB2, TMLHE V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q2824 482246 6691826 CTD-2584M8 RP11-258E22 51 6.20958 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2 V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.224 7247222 7583226 CTD-2546H24 RP11-305H21 3 0.336004 -0.540739207 PRKY p11.224 14696463 15159608 RP11-536O12 RP11-71M14 7 0.463145 -0.497154494 NLGN4Y q11.22124 19127278 19471651 RP11-362D22 RP11-20H21 5 0.344373 -0.426896987 HSFY1, HSFY2 q11.22224 27004540 57705178 RP11-428D10 CTD-2341N11 5 30.700638 -0.523115703 SPRY3, SYBL1 V_4843_LC21267_Wong et al. (2007) q11.23-q12


1 16638358 17153536 RP11-777P8 RP11-497I3 7 0.515178 0.739377316 NECAP2, NBPF1, LOC440570, CROCCV_0005_LC0177_Iafrate et al. (2004), V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al.

(2007), V_4209_LC0177_Wong et al. (2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al. (2007) p36.131 40860040 41566641 RP11-644L15 RP11-164K22 5 0.706601 0.626474332 RIMS3, NFYC, KCNQ4, CITED4, CTPS, FLJ23878, SCMH1 p34.2

1 120249993 147166180 RP11-723D17 RP11-52L8 54 26.916187 1.073585296NOTCH2, LOC440607, NBPF20, PDE4DIP, SEC22B, NOTCH2NL, HFE2, TXNIP, POLR3GL, ANKRD34, LIX1L, RBM8A, PEX11B, ITGA10, ANKRD35, PIAS3, NUDT17, POLR3C, ZNF364, CD160, PDZK1, FAM108A2, PRKAB2, FMO5, CHD1L, BCL9, ACP6, GJA5, GJA8, GPR89A,

NBPF11, NBPF14, NBPF10, NBPF15

V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007), V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et

al. (2007), V_4251_LC0752_Wong et al. (2007), V_4252_LC0752_Wong et al. (2007), V_4253_LC0752_Wong et al. (2007) p12-q21.11 147840444 147979384 RP13-573F13 CTD-2288N2 4 0.13894 0.79600022 V_2052_LC0752_Locke et al. (2006), V_4255_LC0752_Wong et al. (2007), V_4256_LC0752_Wong et al. (2007) q21.1

1 149888055 152092704 RP11-114B18 RP11-216N14 20 2.204649 1.026280369

SNX27, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN, LCE5A, C1orf42, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4, S100A3, S100A2, S100A16,

S100A14, S100A13, S100A1, C1orf77, SNAPAP, ILF2, NPR1, INTS3, SLC27A3, GATAD2B q21.31 152680290 153313451 RP11-719O24 RP11-624P9 4 0.633161 0.63083575 IL6R, SHE, TDRD10, UBE2Q1, CHRNB2, ADAR, KCNN3, PMVK, PBXIP1, PYGO2, SHC1, CKS1B, FLAD1, LENEP, ZBTB7B, DCST2, DCST1, ADAM15, EFNA4 q21.3-q22

1 199995083 246944046 CTD-2016H18 RP11-378I20 462 46.948963 1.307334919

ATP2B4, LAX1, ZC3H11A, SNRPE, C1orf157, SOX13, ETNK2, REN, KISS1, GOLT1A, PLEKHA6, PPP1R15B, PIK3C2B, MDM4, LRRN5, NFASC, CNTN2, TMEM81, RBBP5, RIPK5, TMCC2, NUAK2, KLHDC8A, LEMD1, PCTK3, MFSD4, ELK4, SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569, SLC26A9, AVPR1B, C1orf186, CTSE, SRGAP2, IKBKE, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CD46, CD34, PLXNA2, CAMK1G, LAMB3, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14, SERTAD4, HHAT, KCNH1, RCOR3, TRAF5, C1orf97, C1orf36, SLC30A1, NEK2, LPGAT1, INTS7, DTL, PPP2R5A, C1orf75, NENF, ATF3, FAM71A, SNFT, C1orf48, TATDN3, LOC149643, FLVCR, FLJ12505, ANGEL2,

RPS6KC1, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, LOC128153, RRP15, TGFB2, LYPLAL1, SLC30A10, EPRS, BPNT1, IARS2, RAB3GAP2, MARK1, C1orf115, MOSC2, MOSC1, HLX1, C1orf140, DUSP10, KIAA1822L, TAF1A, MIA3, C1orf80, C1orf58, FLJ43505, DISP1, TLR5, SUSD4, C1orf65, CAPN2, TP53BP2, FBXO28, DEGS1, NVL, CNIH4, WDR26, CNIH3, LBR, ENAH

V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006), V_2091_LC1120_Locke et al. (2006), V_4267_LC1097_Wong et al. (2007), V_4268_LC1117_Wong et al. (2007), V_4269_LC1125_Wong et al. (2007), V_4270_LC1176_Wong et al. (2007), V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et

al. (2007) q32.1-q442 165689926 166321316 RP11-218M2 RP11-71B17 5 0.63139 0.70578638 SCN3A, SCN2A2, TAIP-2, GALNT3 q24.32 199845778 201363696 RP11-404F23 RP11-3D1 15 1.517918 0.70518243 SATB2, FLJ38973, FLJ37953, FLJ22555, DNAPTP6, KCTD18, SGOL2, AOX1 q33.12 204004773 206311412 RP11-711B14 RP11-48O16 25 2.306639 1.680071522 ABI2, RAPH1, CD28, CTLA4, ICOS, PARD3B, NRP2 q33.2-q33.33 36784 9606088 RP11-359E9 RP11-45B16 74 9.569304 0.83229822 CHL1, CNTN6, CNTN4, IL5RA, TRNT1, CRBN, LRRN1, SETMAR, SUMF1, ITPR1, BHLHB2, ARL8B, EDEM1, GRM7, LMCD1, LOH3CR2A, C3orf32, CAV3, OXTR, RAD18, SRGAP3, THUMPD3, SETD5, LOC375323 V_0359_LC2871_Shaw-Smith et al. (2004) p26.3-p25.33 10402872 11469746 CTD-2200M6 RP11-718C20 11 1.066874 0.61474942 ATP2B2, SLC6A11, SLC6A1, HRH1, ATG7 p25.33 16190705 19493745 RP11-661I14 RP11-38B6 33 3.30304 0.716788425 GALNTL2, ZCSL2, OXNAD1, RAFTLIN, DAZL, PLCL2, TBC1D5, SATB1, KCNH8 p24.33 20240612 23601929 RP11-638F19 RP11-612M5 34 3.361317 0.709139438 ZNF659, UBE2E2 V_4332_LC3007_Wong et al. (2007) p24.33 24012117 24694883 RP11-796D2 RP11-646L10 5 0.682766 0.897055041 THRB p24.23 64187739 64841491 RP11-795J19 RP11-633G20 3 0.653752 0.828342942 ADAMTS9 p14.1

5 72312 2556940 RP11-811I15 RP11-32G8 19 2.484628 0.711129988 KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4

V_0704_LC6379_Sharp et al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_4228_LC6379_Wong et

al. (2007), V_4427_LC6379_Wong et al. (2007), V_4428_LC6379_Wong et al. (2007), V_4429_LC6379_Wong et al. (2007) p15.335 4002349 16772158 RP11-614B9 RP11-707B8 138 12.769809 1.078722294 ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2, DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10 V_2082_LC6572_Locke et al. (2006), V_4430_LC6506_Wong et al. (2007) p15.33-p15.1

5 17374146 21370075 RP11-209F18 RP11-627F13 35 3.995929 1.147680064 CDH18

V_0061_LC6634_Iafrate et al. (2004), V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_2083_LC6669_Locke et al. (2006), V_4431_LC6634_Wong et al. (2007), V_4432_LC6634_Wong et al. (2007), V_4433_LC6655_Wong et al. (2007), V_4434_LC6659_Wong et al. (2007), V_4435_LC6669_Wong et al. (2007), V_5051_LC6639_Wong et

al. (2007) p15.1-p14.35 21549827 21835251 RP11-350C5 RP11-650G16 3 0.285424 0.891235082 CDH12 V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_4436_LC6669_Wong et al. (2007) p14.3

5 22348790 42989778 RP11-301A11 RP11-692O9 236 20.640988 1.054041046CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN, FLJ11193, PDZD2, GOLPH3, MTMR12, ZFR, SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1,

UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBL, FLJ13231, NUP155, WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1V_0062_LC6809_Iafrate et al. (2004), V_0063_LC6852_Iafrate et al. (2004), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_4437_LC6794_Wong et al.

(2007), V_4438_LC6794_Wong et al. (2007), V_4439_LC6842_Wong et al. (2007) p14.3-p125 43942203 52270852 RP11-451M5 RP11-272D2 63 8.328649 1.132178952 FGF10, MRPS30, LOC441070, HCN1, EMB, PARP8, ISL1, PELO, ITGA1 V_4441_LC6869_Wong et al. (2007), V_4442_LC6871_Wong et al. (2007), V_4443_LC6881_Wong et al. (2007), V_4444_LC6892_Wong et al. (2007) p12-q11.25 52603366 54800705 RP11-380C11 RP11-643H16 37 2.197339 0.694956898 FST, NDUFS4, ARL15, HSPB3, SNAG1, ESM1, GZMK, GZMA, FLJ37927, LOC493869, UNG2, DHX29, SKIV2L2, PPAP2A q11.25 55463122 56265652 RP11-365H8 CTD-2310F14 12 0.80253 0.756554143 FLJ11795, MGC33648, MIER3 q11.26 46648836 47238640 RP11-738L16 RP11-640H4 5 0.589804 0.749649587 CYP39A1, SLC25A27, TDRD6, PLA2G7, MEP1A, GPR116, GPR110 p12.37 7010427 10911382 RP11-174C14 RP11-142A15 31 3.900955 1.299892523 C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631 V_2099_LC9264_Locke et al. (2006), V_4525_LC9277_Wong et al. (2007) p22.1-p21.37 11303052 12027801 RP11-708A9 RP11-384E21 11 0.724749 0.958772216 p21.3

7 12125704 26121748 RP11-773N16 RP11-613P15 134 13.996044 0.959075396TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7,

DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9

V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_4526_LC9320_Wong et al. (2007), V_4527_LC9340_Wong et

al. (2007), V_4528_LC9358_Wong et al. (2007) p21.3-p15.2

7 26378061 31320443 RP11-348N16 RP11-684G24 49 4.942382 2.536435835SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS,

CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1 V_4529_LC9384_Wong et al. (2007) p15.2-p15.19 78820525 80139836 RP11-637O13 RP11-761F6 15 1.319311 0.938219474 LOC442425, VPS13A, GNA14, GNAQ, PSAT1 q21.13-q21.2


1 149888055 151649639 RP11-114B18 RP11-252O16 17 1.761584 1.026280369SNX27, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN, LCE5A, C1orf42, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C,

LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8 q21.3

1 204607427 208428508 RP11-421E17 RP11-156H13 41 3.821081 1.061238183 SRGAP2, IKBKE, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CD46, CD34, PLXNA2, CAMK1G, LAMB3, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14 V_2091_LC1120_Locke et al. (2006), V_4269_LC1125_Wong et al. (2007) q32.1-q32.21 208638515 209169786 CTD-2016A12 RP11-137J15 4 0.531271 0.957999121 HHAT, KCNH1 q32.21 212021452 218081188 RP11-594F4 RP11-144A7 61 6.059736 1.205280543 PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, LOC128153, RRP15, TGFB2, LYPLAL1 V_4270_LC1176_Wong et al. (2007) q32.3-q411 218406885 221574220 RP11-637H5 RP13-918G3 25 3.167335 1.307334919 RAB3GAP2, MARK1, C1orf115, MOSC2, MOSC1, HLX1, C1orf140, DUSP10, KIAA1822L, TAF1A, MIA3, C1orf80, C1orf58, FLJ43505, DISP1, TLR5, SUSD4 q41



HCH1

1 225278001 225528871 RP11-143H11 RP11-274L11 3 0.25087 1.019386433 CDC42BPA q42.131 230331828 230777027 RP11-472H20 RP11-98M5 5 0.445199 1.029894381 SIPA1L2 q42.21 231277906 233546093 RP11-575P21 RP11-37J2 22 2.268187 1.132963874 PCNXL2, KIAA1804, KCNK1, SLC35F3, C1orf31, TARBP1, IRF2BP2, TOMM20, RBM34, ARID4B V_0016_LC1285_Iafrate et al. (2004), V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et al. (2007) q42.2-q42.31 233834184 234051430 RP11-259C11 RP11-509I1 3 0.217246 1.002480386 GNG4, LYST q42.31 235879553 238303887 RP11-652F18 RP11-35L17 23 2.424334 1.220682528 RYR2, ZP4, CHRM3 q431 238993339 239906571 RP11-184G22 CTD-2110B24 13 0.913232 1.044374738 RGS7, FH, KMO, OPN3, CHML q431 246570675 246944046 RP11-407H12 RP11-378I20 4 0.373371 1.164322763 OR5BF1, OR2T4, OR2T6, OR2T1, OR2T2, OR2T3, OR2T5, OR2G6, OR2T29, OR2T34, OR2T10, OR2T11, OR2T35, OR2T27, OR5BU1 V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006) q442 204004773 206311412 RP11-711B14 RP11-48O16 25 2.306639 1.680071522 ABI2, RAPH1, CD28, CTLA4, ICOS, PARD3B, NRP2 q33.2-q33.35 4002349 5866974 RP11-614B9 RP11-185O11 12 1.864625 1.078722294 ADAMTS16 V_4430_LC6506_Wong et al. (2007) p15.33-p15.325 7393218 9891138 RP11-46O23 RP11-513P1 20 2.49792 1.05082515 ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1 p15.31-p15.25 10636001 12358211 RP11-215G15 RP11-107O20 31 1.72221 1.064449872 DAP, CTNND2 V_2082_LC6572_Locke et al. (2006) p15.25 12352114 16772158 RP11-666I4 RP11-707B8 52 4.420044 1.033959344 DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10 p15.2-p15.1

5 17662950 21158365 RP11-801H23 RP11-337D24 32 3.495415 1.147680064 CDH18 V_0708_LC6659_Sharp et al. (2005), V_4432_LC6634_Wong et al. (2007), V_4433_LC6655_Wong et al. (2007), V_4434_LC6659_Wong et al. (2007), V_5051_LC6639_Wong et al. (2007) p15.1-p14.35 21549827 21835251 RP11-350C5 RP11-650G16 3 0.285424 0.891235082 CDH12 V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_4436_LC6669_Wong et al. (2007) p14.35 22348790 23262939 RP11-301A11 RP11-147J19 13 0.914149 0.933752141 CDH12 p14.35 29636448 31579045 RP11-258I24 RP11-742H7 15 1.942597 1.047226767 CDH6, RNASEN, FLJ11193 p13.35 35821274 36944365 RP11-67N10 RP11-369L23 11 1.123091 0.922894188 FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBL V_0062_LC6809_Iafrate et al. (2004) p13.25 37524528 40467093 RP11-49C16 RP11-18N11 46 2.942565 1.042101271 WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2 V_4439_LC6842_Wong et al. (2007) p13.2-p13.15 40933118 42863532 RP11-301A5 RP11-237B16 12 1.930414 0.967130034 C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1 V_0063_LC6852_Iafrate et al. (2004) p13.1-p125 44285204 44602638 RP11-29N22 RP11-422A12 3 0.317434 1.132178952 FGF10 p125 49908881 51198402 RP11-269M20 RP11-254G13 20 1.289521 1.088756096 PARP8, ISL1 q11.1-q11.27 7010427 8651958 RP11-174C14 RP11-705I21 12 1.641531 1.299892523 C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1 V_2099_LC9264_Locke et al. (2006) p22.1-p21.37 27914550 31297263 RP11-651D9 RP11-85N10 36 3.382713 2.536435835 JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1 V_4529_LC9384_Wong et al. (2007) p15.2-p15.1

OVTOKO


1 153361602 181119612 RP11-263K19 RP11-249O6 273 27.75801 0.734617622

BGLAP, PAQR6, SMG5, TMEM79, C1orf85, VHLL, CCT3, C1orf182, RHBG, C1orf61, MEF2D, IQGAP3, APOA1BP, GPATC4, HAPLN2, BCAN, NES, CRABP2, ISG20L2, C1orf66, MRPL24, HDGF, PRCC, SH2D2A, INSRR, NTRK1, PEAR1, C1orf92, ARHGEF11, FLJ16478, ETV3, FCRL5, FCRL4, FCRL3,FCRL2, FCRL1, CD5L, KIRREL, CD1D, CD1A, CD1C, CD1B, CD1E, OR10T2, OR10K2, OR10K1, OR10R2, OR6Y1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, IFI16, AIM2, IGSF4B, DARC, FCER1A, OR10J3, OR10J1, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, VSIG8, CCDC19, TAGLN2, IGSF9, SLAMF9, PIGM, KCNJ10, KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1, PEA15, WDR42A, PEX19, COPA, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, ITLN2, F11R, USF1, ARHGAP30, PVRL4, KARCA1, PFDN2,

NIT1, DEDD, UFC1, USP21, PPOX, B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, NR1I3, MPZ, SDHC, C1orf192, FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2, DUSP12, ATF6, OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52, MGST3, ALDH9A1, TMCO1, UCK2, FAM78B, POGK, TADA1L, C1orf32, MAE

V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_4257_LC0831_Wong et al. (2007), V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007),

V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007), V_4264_LC0975_Wong et al. (2007) q22-q25.3

1 181632953 246944046 RP11-691F12 RP11-378I20 615 65.311093 1.307334919

NMNAT2, SMG7, NCF2, ARPC5, RGL1, APOBEC4, GLT25D2, C1orf19, C1orf21, C1orf22, C1orf24, RNF2, C1orf25, C1orf26, IVNS1ABP, HMCN1, PRG4, TPR, C1orf27, OCLM, PDC, PTGS2, PLA2G4A, C1orf99, FAM5C, RGS18, RGS21, RGS1, RGS13, RGS2, UCHL5, TROVE2, GLRX2, CDC73, B3GALT2, KCNT2, CFH, CFHR3, CFHR1, CFHR4, CFHR2, CFHR5, F13B, ASPM, ZBTB41, CRB1, FLJ20054, DENND1B, C1orf53, LHX9, NEK7, ATP6V1G3, PTPRC, NR5A2, ZNF281, KIF14, DDX59, CAMSAP1L1, GPR25, C1orf106, KIF21B, CACNA1S, TMEM9, DKFZp434B123, PKP1, TNNT2, LAD1, TNNI1, PHLDA3, CSRP1, NAV1, IPO9, TMEM58, LMOD1, TIMM17A, RNPEP, ELF3, GPR37L1, ARL8A, PTPN7, LGR6, UBE2T, PPP1R12B, SYT2, JARID1B, RABIF, KLHL12, ADIPOR1, CYB5R1, C1orf37, C1orf37-DUP, PPFIA4, MYOG, ADORA1, MYBPH, CHI3L1, CHIT1, BTG2, FMOD, PRELP, OPTC,

ATP2B4, LAX1, ZC3H11A, SNRPE, C1orf157, SOX13, ETNK2, REN, KISS1, GOLT1A, PLEKHA6, PPP1R15B, PIK3C2B, MDM4, LRRN5, NFASC, CNTN2, TMEM81, RBBP5, RIPK5, TMCC2, NUAK2, KLHDC8A, LEMD1, PCTK3, MFSD4, ELK4, SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569, SLC26A9, AVPR1B, C1orf186, CTSE, SRGAP2, IKBKE, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CD46, CD34, PLXNA2, CAMK1G, LAMB3, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107,

SYT14, SERTAD4, HHAT, KCNH1, RCOR3, TRAF5, C1orf97, C1orf36, SLC30A1, NEK2, LPGAT1, INTS7, DTL, PPP2R5A, C1orf75, NENF, ATF3, FAM71

V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharpet al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al. (2006),

V_2056_LC1401_Locke et al. (2006), V_2091_LC1120_Locke et al. (2006), V_4265_LC0992_Wong et al. (2007), V_4266_LC1019_Wong et al. (2007), V_4267_LC1097_Wong et al. (2007), V_4268_LC1117_Wong et al. (2007), V_4269_LC1125_Wong et al. (2007),


2 41662 201946378 CTD-2379H9 RP11-155P18 1893 201.904716 1.584707306

SH3YL1, ACP1, LOC285016, TMEM18, SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC, SOX11, FLJ41046, LOC129607, RSAD2, RNF144, ID2, KIDINS220, OACT2, DDEF2, ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11, CYS1, RRM2, FLJ25102, HPCAL1, ODC1, NOL10, ATP6V1C2, PDIA6, KCNF1, FLJ25143, PQLC3, ROCK2, E2F6, GREB1, NTSR2, LPIN1, TRIB2, FAM84A, NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2,

RHOB, HS1BP3, GDF7, C2orf43, APOB, UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4, FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI, MGC16372, OTOF, CIB4, KCNK3, C2orf18,CENPA, DPYSL5, MAPRE3, FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646,

XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE, FOSL2, PLB1, PPP1CB, SPDY1, FLJ20628, LOC165186, FLJ34931, RSNL2, ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH, SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A, CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC3

V_0018_LC1749_Iafrate et al. (2004), V_0019_LC1897_Iafrate et al. (2004), V_0020_LC1992_Iafrate et al. (2004), V_0021_LC2111_Iafrateet al. (2004), V_0024_LC2234_Iafrate et al. (2004), V_0025_LC2234_Iafrate et al. (2004), V_0027_LC2428_Iafrate et al. (2004),

V_0028_LC2438_Iafrate et al. (2004), V_0029_LC2519_Iafrate et al. (2004), V_0689_LC1609_Sharp et al. (2005), V_0690_LC2119_Sharpet al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp et al. (2005), V_0693_LC2234_Sharp et al. (2005),

V_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke etal. (2006), V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007), V_4275_LC1625_Wong et al. (2007),

V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et al. (2007), V_4282_LC1766_Wong et al. (2007), V_4283_LC1814_Wong et al. (2007),

V_4284_LC1832_Wong et al. (2007), V_4285_LC1867_Wong et al. (2007), V_4286_LC1888_Wong et al. (2007), V_4287_LC1900_Wong et al. (2007), V_4288_LC1904_Wong et al. (2007), V_4289_LC1968_Won p25.3-q33.1

5 72312 54987398 RP11-811I15 RP11-173I16 591 54.915086 1.147680064

KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L, SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4, IRX2, CEI, IRX1, ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2, DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10, BASP1, CDH18, CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN, FLJ11193, PDZD2, GOLPH3, MTMR12, ZFR,

SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBL, FLJ13231, NUP155, WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1, LOC389289, ZNF131, MGC42105, HMGCS1, CCL28, FLJ21657, FLJ32363, PAIP1, NNT, FGF10, MRPS30, LOC441070, HCN1, EMB, PARP8, ISL1,

PELO, ITGA1, ITGA2, MOCS2, FST, NDUFS4, ARL15, HSPB3, SNAG1, ESM1, GZMK, GZMA, FLJ37927, LOC493869, UNG2, DHX29, SKIV2L2, PPAP2A, FLJ90709

V_0061_LC6634_Iafrate et al. (2004), V_0062_LC6809_Iafrate et al. (2004), V_0063_LC6852_Iafrate et al. (2004), V_0704_LC6379_Sharpet al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005),

V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke etal. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006),

V_2082_LC6572_Locke et al. (2006), V_2083_LC6669_Locke et al. (2006), V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke etal. (2006), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007),


V_4434_LC6659_Wong et al. (2007), V_4435_LC6669_Wong et al. (2007), V_4436_LC6669_Wong et al. (2007), V_4437_LC6794_Wong et al. (2007), V_4438_LC6794_Wong et al. (2007), V_4439_LC6842_Won p15.33-q11.2

5 55546768 59523974 RP11-412L4 RP11-360M14 68 3.977206 0.756554143 FLJ11795, MGC33648, MIER3, GPBP1, DKFZp686D097, PLK2, C5orf29, RAB3C, PDE4D q11.2-q12.15 59675325 64247337 RP11-263N7 RP11-694I1 75 4.572012 0.768687112 DEPDC1B, ELOVL7, ERCC8, NDUFA12L, DKFZP686E215, FLJ37543, KIF2A, HSA9761, IPO11, LOC389293, HTR1A, RNF180, R7BP, P18SRP, SDCCAG10 q12.1-q12.35 65420291 68208737 RP11-425G9 RP11-571A5 45 2.788446 0.687112719 SFRS12, FLJ46010, LOC375449, CD180, PIK3R1 q12.3-q13.1

7 40844 158818116 CTD-2245C5 CTD-2319F20 1552 158.777272 2.536435835

FAM20C, PDGFA, PRKAR1B, FLJ20397, UNC84A, FLJ44124, C7orf20, CENTA1, COX19, CYP2W1, MGC11257, GPR146, GPR30, ZFAND2A, LOC641901, UNCX4.1, MICALL2, MICAL-L2, INTS1, MAFK, MGC9712, MGC10911, LOC401296, MAD1L1, FTSJ2, NUDT1, SNX8, EIF3S9, CHST12, LFNG, C7orf27, IQCE, TTYH3, AMZ1, GNA12, CARD11, SDK1, FOXK1, KIAA0415, FLJ10324, PAPOLB, MMD2, RBAK, LOC389458, WIPI2, SLC29A4, KIAA1856, FBXL18, ACTB, FSCN1, TRIAD3, C7orf28A, PMS2, JTV1, EIF2AK1, USP42, PSCD3, MGC12966, RAC1, LOC221955, KDELR2, ZDHHC4, C7orf26,ZNF12, LOC222967, C7orf28B, C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631, NDUFA4, PHF14, TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7, DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693, C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9, NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2,

HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2, CARD4, C7orf24, GARS, CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16, PDE1C, LSM5, KIAA0241, LOC441208, KBTBD2, LOC441212, FKBP9, NT5C3, RP9, PTHB1, B



V_0110_LC10016_Iafrate et al. (2004), V_0111_LC10099_Iafrate et al. (2004), V_0719_LC9421_Sharp et al. (2005), V_0720_LC9535_Sharp et al. (2005), V_0721_LC9545_Sharp et al. (2005), V_0722_LC9554_Sharp et al. (2005), V_0723_LC9631_Sharp et

al. (2005), V_0724_LC9769_Sharp et al. (2005), V_0725_LC10016_Sharp et al. (2005), V_0726_LC10016_Sharp et al. (2005), V_0727_LC10049_Sharp et al. (2005), V_0728_LC10049_Sharp et al. (2005), V_0729_LC10082_Sharp et al. (2005),

V_0730_LC10082_Sharp et al. (2005), V_2099_LC9264_Locke et al. (2006), V_2100_LC9545_Locke et al. (2006), V_2101_LC9554_Locke et al. (2006), V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Lo p22.3-q36.3

9 40567914 70234204 RP11-479H15 RP11-211E19 44 29.66629 0.685599593 LOC727830, ZNF658, ZNF658B, ANKRD20A2, LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5

V_0743_LC11344_Sharp et al. (2005), V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005),V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_2129_LC11330_Locke et al. (2006), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2140_LC11330_Locke et al. (2006), V_2141_LC11344_Locke et al. (2006), V_2142_LC11330_Locke et al. (2006), V_2143_LC11330_Locke et al. (2006),

V_2144_LC11344_Locke et al. (2006), V_2145_LC11344_Locke et al. ( p12-q13

10 37859931 135354737 CTD-2190G3 RP11-1065F16 908 97.494806 0.781913281

ZNF248, ZNF25, ZNF33A, ZNF37A, ZNF11B, BMS1L, RET, GALNACT-2, RASGEF1A, FXYD4, HNRPF, ZNF239, ZNF485, ZNF32, CXCL12, RASSF4, C10orf10, C10orf25, ZNF22, OR13A1, ALOX5, ANUBL1, FAM21C, CTGLF1, LOC594834, PDZK5B, SYT15, KIAA0514, PPYR1, ANXA8, LOC653107, ZNF488, RBP3, GDF2, GDF10, PTPN20A, PTPN20B, FRMPD2, MAPK8, ARHGAP22, LRRC18, C10orf72, C10orf71, LOC644168, ERCC6, PGBD3, SLC18A3, CHAT, C10orf53, OGDHL, PARG, CTGLF5, CTGLF4, MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-564C4.2, ACF,

PRKG1, CSTF2T, DKK1, MBL2, PCDH15, ZWINT, IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2, NRBF2, JMJD1C, REEP3, CTNNA3, LRRTM3, DNAJC12, SIRT1, HERC4,FLJ14437, ATOH7, MAWBP, HNRPH3, RUFY2, DNA2L, SLC25A16, CXXC6, CCAR1, STOX1, DDX50, DDX21, KIAA1279, PRG1, VPS26A, SUPV3L1, HKDC1, HK1, TACR2, TSPAN15, NEUROG3, C10orf35, COL13A1, H2AFY2, AMID, TYSND1, SAR1A, PPA1, NPFFR1, LRRC20, EIF4EBP2, NODAL, KIAA1274, PRF1, ADAMTS14, C10orf27, SGPL1, PCBD1, UNC5B, SLC29A3, CDH23, C10orf54, PSAP, CHST3, SPOCK2, ASCC1, C10orf104, DDIT4, DNAJB12, CBARA1, C10orf42, OIT3, PLA2G12B, P4HA1, NUDT13, ECD, DNAJC9, MRPS16, TTC18, ANXA7, ZMYND17, PPP3CB, USP54, MYOZ1,

SYNPO2L, SEC24C, FUT11, CHCHD1, KIAA0913, NDST2, CAMK2G, C10orf55, PLAU, VCL, AP3M1, ADK, MYST4, DUPD1, DUSP13, SAMD8, VDAC2,

V_0136_LC12274_Iafrate et al. (2004), V_0138_LC12468_Iafrate et al. (2004), V_0370_LC12807_Le Caignec et al. (2005),V_0762_LC12488_Sharp et al. (2005), V_0763_LC12261_Sharp et al. (2005), V_0764_LC12274_Sharp et al. (2005), V_0765_LC12481_Sharp et al. (2005), V_0766_LC12664_Sharp et al. (2005), V_2152_LC12261_Locke et al. (2006), V_2153_LC12274_Locke et al. (2006), V_2154_LC12274_Locke et al. (2006), V_2155_LC12288_Locke et al. (2006), V_2156_LC12305_Locke et al. (2006), V_2157_LC12477_Locke et al. (2006), V_2158_LC12478_Locke et al. (2006), V_2159_LC12481_Locke et al. (2006), V_2160_LC12485_Locke et al. (2006), V_2161_LC12488_Locke et al. (2006), V_2162_LC12807_Locke et al. (2006), V_4677_LC12257_Wong et al. (2007), V_4678_LC12257_Wong et al. (2007), V_4679_LC12257_Wong et al. (2007), V_4680_LC12257_Wong et al. (2007), V_4681_LC12274_Wong et al. (2007), V_4682_LC12274_Wong et al. (2007), V_4683_LC12274_Wong et al. (2007), V_4684_LC12274_Wong et al. (2007), V_4685_LC12274_Wong et al. (2007), V_4686_LC12298_Wong et al. (2007), V_4687_LC12274_Wong et al. (2007),

V_4688_LC12274_Wong et al. (2007), V_4689_LC12274_Wong et al. ( p11.21-q26.3

11 61089887 65021218 RP11-5F17 RP11-456L5 42 3.931331 0.719559338

SYT7, C11orf11, C11orf9, C11orf10, FEN1, FADS1, FADS2, FADS3, RAB3IL1, VMD2, FTH1, LOC399900, INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, RBM21, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, LOC751071, LOC790955, LOC51035, LOC221091, BSCL2, GNG3, HNRPUL2, TTC9C, ZBTB3, POLR2G, TAF6L, LOC374395, MGC3196, NXF1, STX5, WDR74, SLC3A2, CHRM1, SLC22A6, SLC22A8, MGC34821, LOC387601, SLC22A10, SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, HRASLS3,

DKFZP564J086, RTN3, LOC144097, MARK2, RCOR2, NAT11, COX8A, OTUB1, LRP16, FLRT1, STIP1, URP2, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, KCNK4, ESRRA, HSPC152, PRDX5, CCDC88, RPS6KA4, SLC22A11, SLC22A12, NRXN2, RASGRP2, PYGM, SF1, MAP4K2, MEN1, CDC42BPG, EHD1, KIAA0404, PPP2R5B, GPHA2, LOC283129, BATF2, ARL2, SNX15, SAC3D1, NAALADL1, CDCA5, ZFPL1, C11orf2, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, LOC387778, CAPN1, FLJ16331, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FKSG44

V_0150_LC13257_Iafrate et al. (2004), V_4749_LC13256_Wong et al. (2007), V_4750_LC13267_Wong et al. (2007), V_4751_LC13267_Wong et al. (2007), V_4752_LC13273_Wong et al. (2007), V_4753_LC13273_Wong et al. (2007) q12.2-q13.1

11 71399963 80194218 RP11-92H23 RP11-355G10 73 8.794255 1.435967617

NUMA1, LRRC51, C11orf59, C11orf51, FOLR3, FOLR1, FOLR2, INPPL1, PHOX2A, CLPB, PDE2A, CENTD2, STARD10, ATG16L2, FCHSD2, P2RY2, P2RY6, ARHGEF17, TNFRSF19L, KIAA0280, PLEKHB1, RAB6A, MRPL48, CHCHD8, WDR71, DNAJB13, UCP2, UCP3, DKFZP586P012, PPME1, P4HA3, PGM2L1, KCNE3, MGC12965, POLD3, CHRDL2, LOC653566, SPCS2, NEU3, OR2AT4, SLCO2B1, ARRB1, RPS3, FLJ33790, GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG, WNT11, PRKRIR, C11orf30, LRRC32, LRRC54, PHCA, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1,

AQP11, CLNS1A, HBXAP, PTD015, INTS4, KCTD14, THRSP, NDUFC2, ALG8, LOC283219, GAB2, NARS2V_0151_LC13373_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006),

V_4727_LC13373_Wong et al. (2007) q13.4-q14.112 3851445 5803169 RP11-358F19 RP11-792F18 16 1.951724 0.579858111 PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B p13.32-p13.3112 30015090 31158927 RP11-174D5 RP11-294K14 13 1.143837 0.545074842 IPO8, C1QDC1, TSPAN11, DDX11, OVOS2 p11.22-p11.21

12 32229775 47460844 RP11-768K13 RP11-676A5 142 15.231069 0.628672813BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1, ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2,

SLC38A4, AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA, C12orf41, CCNT1, ADCY6 V_2170_LC13972_Locke et al. (2006), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007) p11.21-q13.1212 57528337 61267390 RP11-630J21 CTD-2057F24 55 3.739053 0.461192619 LRIG3, SLC16A7, FAM19A2, USP15, MON2 q14.1

12 69726624 83977622 RP11-13A5 RP11-1L6 128 14.250998 0.847977049TSPAN8, LGR5, PSRC2, THAP2, TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7, NAV3, SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2,

CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1V_4774_LC14229_Wong et al. (2007), V_4781_LC14179_Wong et al. (2007), V_4782_LC14235_Wong et al. (2007),

V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007) q15-q21.3112 84442776 87916579 RP11-200P9 RP11-651M5 31 3.473803 0.617001383 PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG V_0165_LC14278_Iafrate et al. (2004) q21.31-q21.3312 88275620 91721639 RP11-12B6 RP11-742I4 34 3.446019 0.547638482 WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1 V_4785_LC14298_Wong et al. (2007) q21.33-q2212 92650639 94381166 RP11-644H3 RP11-583C2 13 1.730527 0.384444496 CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT q22

12 94815208 119459071 RP11-504F21 RP11-50I20 262 24.643863 0.617488476

NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1, C12orf42, STAB2, NT5DC3, HSP90B1, TDG, GLT8D2, HCFC2, NFYB, TXNRD1, EID3, CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NUAK1, CKAP4, TCP11L2, POLR3B, RFX4, RIC8B, C12orf23, MTERFD3, CRY1, BTBD11, PWP1, PRDM4,ASCL4, KIAA0789, CMKLR1, HYPE, SART3, NIFUN, TMEM119, SELPLG, CORO1C, SSH1, DAO, SVOP, USP30, ALKBH2, UNG, ACACB, FOXN4, KCTD10, UBE3B, MMAB, MVK, C12orf34, TRPV4, GLTP, TCHP, GIT2, ANKRD13, FLJ40142, IFT81, ATP2A2, ANAPC7, ARPC3, ATPBD1C, C12orf24, VPS29, RAD9B, PPTC7, TECT1, HVCN1, PPP1CC, CCDC63, MYL2, CUTL2, FAM109A, LNK, ATXN2, BRAP, ACAD10, ALDH2, MAPKAPK5, TMEM116, ERP29, C12orf30, TRAFD1, C12orf51, RPL6, PTPN11, RPH3A, OAS1, OAS3, OAS2, DTX1, RASAL1, DDX54, C12orf52, IQCD, TPCN1, SLC24A6,

LOC196463, SDS, SDSL, LHX5, RBM19, TBX5, TBX3, THRAP2, FLJ42957, C12orf49, TMEM118, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2, RFC5, WSB2, FLJ20674, PEBP1, TAOK3, SUDS3, KIAA1853, HSPB8, CCDC60, PRKAB1, CIT, CCDC64, RAB35, GCN1L1, RPLP0, PXN, SIRT4, PLA2G1B, MSI1, COX6A1, TRIAP1, 15E1.2, SFRS9, DYNLL1, COQ5, RNF10

V_0166_LC14429_Iafrate et al. (2004), V_4786_LC14380_Wong et al. (2007), V_4787_LC14460_Wong et al. (2007), V_4788_LC14466_Wong et al. (2007), V_4789_LC14468_Wong et al. (2007) q23.1-q24.31

12 122591055 132289529 RP11-387F15 CTD-2140B24 91 9.698474 0.544439999TMED2, DDX55, EIF2B1, GTF2H3, C12orf38, ATP6V0A2, DNAH10, CCDC92, ZNF664, FAM101A, NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS, TMEM132B, SLC15A4, GLT1D1, TMEM132D, FZD10, PIWIL1, RIMBP2, EPIM, RAN, GPR133, SFRS8, MMP17, ULK1, PUS1, EP400, DDX51, NOC4L,

GALNT9, P2RX2, POLE, PXMP2, PGAM5, GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10, ZNF268

V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. (2006), V_4404_LC14595_Wong et al. (2007), V_4792_LC14514_Wong et al. (2007), V_4793_LC14538_Wong et al. (2007), V_4794_LC14556_Wong et al. (2007),


14 18071243 19360529 RP11-404K10 RP11-447E14 11 1.289286 0.53519584 OR11H12, POTE14, LOC440157, OR4Q3, OR4M1

V_0812_LC15340_Sharp et al. (2005), V_2174_LC15340_Locke et al. (2006), V_2256_LC15340_Locke et al. (2006), V_4822_LC15340_Wong et al. (2007), V_4823_LC15340_Wong et al. (2007), V_4824_LC15340_Wong et al. (2007), V_4825_LC15340_Wong et al. (2007), V_4826_LC15340_Wong et al. (2007), V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.2

16 11067102 11625737 RP11-228K9 RP11-788A3 4 0.558635 0.514128419 KIAA0350, SOCS1, TNP2, PRM3, PRM2, PRM1, MGC24665, LOC400499, LITAF p13.13

17 5112395 22550739 RP11-683P7 RP11-1432H15 182 17.438344 0.545744722

PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, TMEM95, TNK1, PLSCR3, C17orf61, NLGN2, C17orf83, C17orf74, TMEM102, FGF11, CHRNB1, ZBTB4, POLR2A, TNFSF12, TNFSF12-TNFS, TNFSF13, SENP3, EIF4A1, CD68, MPDU1, SOX15, FXR2, SAT2, SHBG, ATP1B2, TP53, WDR79, EFNB3, DNHD3, JMJD3, TMEM88, LSMD1, CYB5D1, CHD3, KCNAB3, TRAPPC1, CNTROB, GUCY2D, ALOX15B, ALOX12B, ALOXE3, HES7, PER1, VAMP2, TMEM107, C17orf59, AURKB, C17orf68, PFAS, SLC25A35, RANGNRF, ARHGEF15, ODF4, KRBA2, RPL26, NDEL1, MYH10, CCDC42, FLJ35773, C17orf38, PIK3R5, NTN1, STX8, WDR16, USP43, GLP2R, RCV1, GAS7, MYH13, MYH8, MYH4, MYH1, MYH2, MYH3, SCO1, C17orf48, LOC388335, FLJ45455, DNAH9, ZNF18, MAP2K4, MYOCD, KIAA0672, ELAC2, HS3ST3A1, COX10, CDRT15, HS3ST3B1, FLJ45831, PMP22, TEKT3, CDRT4, FAM18B2, CDRT1, TRIM16, ZNF286, MGC51025, ADORA2B, SWS1, TTC19, NCOR1, PIGL, PRR6, UBB, TRPV2, C17orf45, C17orf76, ZNF287, ZNF624, TNFRSF13B, M-RIP, LOC201164, FLCN, COPS3, NT5M, MED9, RASD1, PEMT, RAI1,

SREBF1, TOM1L2, LRRC48, ATPAF2, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII, SMCR7, TOP3A, SMCR8, SHMT1, LOC654346, LOC220594, F

V_0798_LC17354_Sharp et al. (2005), V_2218_LC17354_Locke et al. (2006), V_2219_LC17388_Locke et al. (2006), V_4988_LC17315_Wong et al. (2007), V_4989_LC17333_Wong et al. (2007), V_4990_LC17383_Wong et al. (2007), V_4992_LC17388_Wong et al. (2007), V_4993_LC17390_Wong et al. (2007), V_4994_LC17394_Wong et al. (2007), V_4995_LC17400_Wong et al. (2007), V_4996_LC17400_Wong et al. (2007), V_4997_LC17400_Wong et al. (2007),

V_4998_LC17406_Wong et al. (2007) p13.2-q11.1

17 28500161 33427467 RP11-134L18 RP11-121G16 54 4.927306 1.042607643ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, FLJ44815, TMEM132E, CCT6B, CCDC16, LIG3, RFFL, RAD51L3, FNDC8, NLE1, UNC45B, AMAC1, SLFN5, FLJ34922, FLJ10260, SLFN13, PEX12, AP2B1, RASL10B, GAS2L2, C17orf50, MMP28, TAF15, C17orf66, CCL5, RDM1, LYZL6, CCL16,

CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, CCL3L1, CCL3L3, CCL4L1, CCL4L2, TBC1D3C, LOC654341, ZNHIT3, MYOHD1, PIGW, ZNF403, MGC4172, MRM1, LHX1, AATF, ACACA, C17orf78, TADA2L, DUSP14, AP1GBP1, DDX52, TCF2

V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_2220_LC17457_Locke et al. (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. (2006), V_2223_LC17457_Locke et al. (2006), V_5001_LC17457_Wong et al. (2007), V_5002_LC17457_Wong et al. (2007), V_5003_LC17457_Wong et al. (2007),

V_5004_LC17457_Wong et al. (2007) q11.2-q1217 40772510 41005728 RP11-345I14 RP11-798G7 3 0.233218 0.645980476 ARHGAP27, LOC201175, PLEKHM1 V_5010_LC17522_Wong et al. (2007) q21.31

17 42061812 60310829 RP11-84A7 RP11-737D4 219 18.249017 2.00166997

NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1, SNX11, SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13, TTLL6, CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB, NGFR, NXPH3, SPOP, SLC35B1, LOC81558, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2,

MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2, MBTD1, UTP18, CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1, CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2, MRC2, RNF190, CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2,

CSH2, GH2, CSH1, CSHL1, GH1, CD79B, SCN4A, ICAM2, ERN1, TEX2, PECAM1, POLG2, DDX5, CCDC45, SMURF2, FLJ34306

V_0207_LC17522_Iafrate et al. (2004), V_0208_LC17538_Iafrate et al. (2004), V_0209_LC17565_Iafrate et al. (2004), V_0210_LC17626_Iafrate et al. (2004), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_0805_LC17601_Sharp et al. (2005), V_2228_LC17522_Locke et al. (2006), V_2229_LC17530_Locke et al. (2006), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_4410_LC17595_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007), V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007), V_5019_LC17572_Wong et al. (2007), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007), V_5022_LC17631_Wong et al. (2007),


17 60499372 78398677 RP11-169I9 RP11-424C10 185 17.899305 0.638244654

RGS9, AXIN2, CCDC46, APOH, PRKCA, CACNG5, CACNG4, CACNG1, HELZ, PSMD12, PITPNC1, NOL11, BPTF, C17orf58, KPNA2, AMZ2, SLC16A6, ARSG, WIPI1, PRKAR1A, FAM20A, ABCA8, ABCA9, ABCA6, ABCA10, ABCA5, MAP2K6, KCNJ16, KCNJ2, SOX9, SLC39A11, SSTR2, COG1, FAM104A, C17orf80, CDC42EP4, SDK2, C17orf54, RPL38, TTYH2, DNAI2, KIF19, LOC388419, GPR142, GPRC5C, CD300A, CD300LB, CD300C, C17orf77, CD300E, CD300LF, RAB37, SLC9A3R1, NAT9, TMEM104, GRIN2C, FDXR, FADS6, USH1G, OTOP2, OTOP3, C17orf28, CDR2L, ICT1, ATP5H,

KCTD2, SLC16A5, ARMC7, NT5C, HN1, SUMO2, NUP85, GGA3, MRPS7, MIF4GD, SLC25A19, GRB2, KIAA0195, CASKIN2, TSEN54, LLGL2, RECQL5, SAP30BP, ITGB4, GALK1, H3F3B, ZC3H5, UNC13D, WBP2, TRIM47, TRIM65, MRPL38, FBF1, ACOX1, CDK3, EVPL, SRP68, GALR2, LGICZ1, EXOC7, FOXJ1, RNF157, FAM100B, QRICH2, PRPSAP1, SPHK1, UBE2O, AANAT, RHBDF2, CYGB, PRCD, ST6GALNAC2, ST6GALNAC1, MXRA7, PTDSR, LOC124512, SFRS2, ET, MGAT5B, SEC14L1, FLJ45079, TNRC6C, TMC6, TMC8, SYNGR2, TK1, AFMID, BIRC5, SOCS3, PGS1, DNAH17,

DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713, ENPP7, CBX2, CBX8, CBX4, TBC1D16, GAA, DDX48, CARD14, SGSH, SLC26A11, KIAA1618, C17orf27, FLJ35220, NPTX1, KIAA1303, CHMP6, BAIAP2, AATK, AZI1, C17orf56, MGC15523, C17orf55,TMEM105, BAHCC1, ACTG1, FSCN2, C17orf70, NPLOC4, TSPAN10, PDE6G, LOC339229, ARL16, HGS, MRPL12, SLC25A10, DYSFIP1, P4HB, ARHG

V_0211_LC17666_Iafrate et al. (2004), V_0212_LC17741_Iafrate et al. (2004), V_0213_LC17753_Iafrate et al. (2004), V_0806_LC17642_Sharp et al. (2005), V_0807_LC17750_Sharp et al. (2005), V_2232_LC17640_Locke et al. (2006), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006), V_2235_LC17756_Locke et al. (2006), V_4327_LC17763_Wong et al. (2007), V_5026_LC17636_Wong et al. (2007), V_5027_LC17640_Wong et al. (2007), V_5028_LC17688_Wong et al. (2007), V_5029_LC17706_Wong et al. (2007), V_5030_LC17713_Wong et al. (2007), V_5031_LC17717_Wong et al. (2007), V_5032_LC17720_Wong et al. (2007), V_5033_LC17737_Wong et al. (2007), V_5034_LC17743_Wong et al. (2007), V_5035_LC17750_Wong et al. (2007), V_5036_LC17763_Wong et al. (2007), V_5039_LC17763_Wong et al. (2007), V_5040_LC17763_Wong et al. (2007), V_5041_LC17763_Wong et al. (2007),


18 17653 15399258 RP11-683L23 RP11-390I6 165 15.381605 1.157348441USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3, TTMA, L3MBTL4, ARHGAP28, LAMA1, PTPRM, RAB12, KIAA0802, NDUFV2, ANKRD12, TWSG1,

RALBP1, PPP4R1, RAB31, TXNDC2, VAPA, APCDD1, NAPG, FAM38B, GNAL, CHMP1B, MPPE1, IMPA2, CIDEA, TUBB6, AFG3L2, C18orf43, SPIRE1, CEP76, TNFSF5IP1, PTPN2, SEH1L, CEP192, C18orf1, C18orf19, RNMT, MC5R, MC2R, ZNF519, MGC26718V_2236_LC17918_Locke et al. (2006), V_5044_LC17825_Wong et al. (2007), V_5045_LC17914_Wong et al. (2007),

V_5046_LC17976_Wong et al. (2007) p11.32-p11.2118 18124764 18690942 RP11-219C7 RP11-424A12 4 0.566178 0.497310989 CTAGE1 q11.2

20 37210 62434349 CTD-2506E2 RP11-350G15 541 62.397139 1.775561826

DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55, ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35,TGM3, TGM6, SNRPB, ZNF343, TMC2, NOL5A, IDH3B, CPXM, C20orf141, FAM113A, VPS16, PTPRA, GNRH2, MRPS26, OXT, AVP, UBOX5, FLJ13149, ProSAPiP1, C20orf116, ITPA, SLC4A11, ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA,PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2, PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2, HAO1, TXNDC13, PLCB1, PLCB4, C20orf103, PAK7, ANKRD5, SNAP25, MKKS, C20orf94, JAG1, BTBD3, SPTLC2L, TASP1, C20orf6, C20orf7, FLRT3, C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179, SNX5, C20orf72, OVOL2, CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, C20orf26,

INSM1, C20orf74, C20orf19, XRN2, NKX2-2, PAX1, FOXA2, SSTR4, THBD, CD93, NXT1, ZNF336, NAPB, CSTL1, CST11, CST8, CST9L, CST9, CST3, C

V_0222_LC19227_Iafrate et al. (2004), V_0224_LC19418_Iafrate et al. (2004), V_0225_LC19530_Iafrate et al. (2004),V_0226_LC19822_Iafrate et al. (2004), V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_2251_LC19741_Locke et al. (2006), V_2252_LC19985_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007), V_5121_LC19253_Wong et al. (2007), V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007), V_5125_LC19365_Wong et al. (2007), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et al. (2007), V_5129_LC19510_Wong et al. (2007), V_5130_LC19530_Wong et al. (2007), V_5131_LC19539_Wong et al. (2007), V_5132_LC19553_Wong et al. (2007), V_5133_LC19567_Wong et al. (2007), V_5134_LC19585_Wong et al. (2007), V_5135_LC19601_Wong et al. (2007), V_5136_LC19617_Wong et al. (2007), V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007), V_5139_LC19754_Wong et al. (2007), V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007),

V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. ( p13-q13.3322 14440103 14660949 CTD-2177M20 RP11-506K22 5 0.220846 0.691860514 ACTBL1 V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007), V_5165_LC20342_Wong et al. (2007) q11.1


1 1622658 4210480 RP11-730K14 RP11-727K9 21 2.587822 -0.909173882CDC2L1, CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, LOC339457, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, ACTRT2, PRDM16, ARHGEF16, MEGF6, FAM79A, WDR8, TP73, KIAA0495, CCDC27, LRRC47,

KIAA0562, DFFB, C1orf174

V_0002_LC0028_Iafrate et al. (2004), V_2042_LC0028_Locke et al. (2006), V_4192_LC0040_Wong et al. (2007), V_4193_LC0040_Wong etal. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007),

V_4197_LC0040_Wong et al. (2007) p36.33-p36.32

1 6039489 7021954 RP11-668O13 RP11-334N17 11 0.982465 -0.708222138 KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et

al. (2007) p36.31

1 7959002 14453885 RP11-478I22 RP11-181N12 53 6.494883 -0.605505768

PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2, IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10, PRAMEF3,

PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2V_0003_LC0126_Iafrate et al. (2004), V_0004_LC0152_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005), V_0677_LC0152_Sharp

et al. (2005), V_4204_LC0118_Wong et al. (2007), V_4205_LC0141_Wong et al. (2007), V_4403_LC0152_Wong et al. (2007) p36.23-p36.21

1 15165486 16869758 RP11-164M5 RP11-408H16 19 1.704272 -0.462480371 KIAA1026, FLJ43806, TMEM51, EFHD2, CTRC, ELA2A, ELA2B, CASP9, DNAJC16, AGMAT, DDI2, RSC1A1, SLC25A34, LOC388595, FBLIM1, SPEN, ZBTB17, C1orf64, HSPB7, CLCNKA, CLCNKB, C1orf117, EPHA2, ARHGEF19, C1orf89, FBXO42, C1orf144, SPATA21, NECAP2, NBPF1V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et

al. (2007), V_4209_LC0177_Wong et al. (2007) p36.21-p36.13

2 202350308 237043120 RP11-59N16 RP11-155J6 369 34.692812 -1.09040918

LOC389072, CRYGD, CRYGC, CRYGB, CRYGA, IDH1, PIP5K3, PTHR2, MAP2, C2orf21, RPE, FLJ23861, ACADL, MYL1, LANCL1, CPS1, ERBB4, IKZF2, SPAG16, LOC402117, BARD1, ABCA12, ATIC, FN1, MREG, PECR, LOC92691, XRCC5, SMARCAL1, RPL37A, IGFBP2, IGFBP5, TNP1, TNS1, FLJ46536, IL8RB, IL8RA, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MGC50811, SLC11A1, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, WNT10A, CDK5R2, FEV, CRYBA2, DKFZp434O052, IHH, XLF, SLC23A3, C2orf24, C2orf17, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA1, DNAJB2, PTPRN, RESP18, DNPEP, DES, GMPPA, ACCN4, CHPF, MGC99813, OBSL1, INHA, STK11IP, SLC4A3, EPHA4, PAX3, FLJ32447, SGPP2, FARSLB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2,

FLJ22746, CUL3, DOCK10, IRS1, RHBDD1, COL4A4, COL4A3, C2orf33, TM4SF20, HRB, DKFZp547H025, SLC19A3, CCL20, WDR69, FLJ20701, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, LOC93349, SP100, CAB39, ITM2C, GPR55, PSMD1, HTR2B, ARMC9, B3GNT7, NCL, MGC43122, NMUR1, MGC35154, PTMA, PDE6D, COPS7B, NPPC, DIS3L2, ALPP, ALPPL2, ALPI, ECEL1, CHRND, CHRNG, TIGD1, EIF4E2, EFHD1, TNRC15, KCN

V_0030_LC2686_Iafrate et al. (2004), V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007), V_4326_LC2650_Wong et al. (2007), V_4328_LC2702_Wong et al. (2007), V_4329_LC2749_Wong et al. (2007) q33.1-q37.3

2 238245777 238822618 RP11-96N17 RP11-526L8 5 0.576841 -0.613391876 LRRFIP1, FLJ40411, RAMP1, UBE2F, SCLY, LOC339768, KLHL30, ILKAP, HES6, PER2 q37.32 241063271 242750818 RP11-27M15 RP11-1159G17 15 1.687547 -0.613143905 ANKMY1, LOC285193, RNPEPL1, CAPN10, GPR35, AQP12A, KIF1A, AGXT, FLJ22671, SNED1, MTERFD2, PASK, PPP1R7, TMEM16G, HDLBP, FARP2, STK25, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2, NEU4, PDCD1, FLJ33590 V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4331_LC2814_Wong et al. (2007) q37.33 127333435 128962916 RP11-311P9 CTD-2342N21 18 1.629481 -0.338288409 ALDH1L1, KLF15, CCDC37, ZXDC, UROC1, CHST13, C3orf22, TR2IT1, CHCHD6, PLXNA1, C3orf56, GPR175, MCM2, PODXL2, ABTB1, MGLL q21.2-q21.33 139761363 142042468 RP11-186B11 RP11-739B15 31 2.281105 -0.37822841 CEP70, FAIM, PIK3CB, FOXL2, LOC389151, FLJ46210, MRPS22, COPB2, RBP2, RBP1, NMNAT3, CLSTN2, TRIM42 V_0036_LC3666_Iafrate et al. (2004) q22.3-q233 142430989 142737178 RP11-453M9 RP11-115D2 4 0.306189 -0.294633185 ACPL2, ZBTB38, RASA2 q233 184871882 185981023 RP11-12L14 RP11-157M17 11 1.109141 -0.279559329 KLHL24, YEATS2, MAP6D1, PARL, ABCC5, HTR3D, HTR3C, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, ALG3, MGC2408, CAMK2N2, ECE2, PSMD2, EIF4G1, C3orf40, CLCN2, POLR2H, THPO, CHRD, EPHB3, MAGEF1 V_4364_LC3931_Wong et al. (2007), V_4365_LC3931_Wong et al. (2007) q27.13 198002031 198552178 RP11-296H14 RP11-149L3 6 0.550147 -0.296120228 PAK2, SENP5, NCBP2, PIGZ, MFI2, DLG1 V_0043_LC4057_Iafrate et al. (2004), V_4369_LC4050_Wong et al. (2007) q293 198624956 199236059 CTD-2021K18 RP11-721B3 4 0.611103 -0.312980981 BDH1, FYTTD1, LRCH3, IQCG, RPL35A, LMLN V_0044_LC4057_Iafrate et al. (2004), V_4370_LC4057_Wong et al. (2007) q29

8 86620595 86898973 RP11-509F16 RP11-13P8 5 0.278378 -0.635823436 REXO1L1

V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007),

V_4605_LC10727_Wong et al. (2007) q21.2

9 100914806 117814870 RP11-734K7 RP11-81L14 165 16.900064 -1.108937541

TGFBR1, ALG2, SEC61B, NR4A3, STX17, TXNDC4, INVS, TEX10, C9orf30, TMEFF1, LOC347273, PRG-3, BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FCMD, TAL2, TMEM38B, ZNF462, RAD23B, KLF4, ACTL7B, ACTL7A, IKBKAP, C9orf6, CTNNAL1, C9orf5, C9orf4, EPB41L4B, PTPN3, PALM2, PALM2-AKAP2, AKAP2, C9orf152, TXN, TXNDC8, SVEP1, MUSK, EDG2, OR2K2, KIAA0368, ZNF483, LTB4DH, bA16L21.2.1,LOC552891, GNG10, C9orf84, UGCG, SUSD1, ROD1, HSDL2, KIAA1958, C9orf80, TSCOT, ZFP37, SLC31A2, SLC31A1, CDC26, PRPF4, RNF183, WDR31, BSPRY, HDHD3, ALAD, POLE3, C9orf43, RGS3, ZNF618, AMBP, KIF12, COL27A1, ORM1, ORM2, AKNA, DFNB31, ATP6V1G1, C9orf91,

TNFSF15, TNFSF8, TNCV_0131_LC11661_Iafrate et al. (2004), V_4649_LC11564_Wong et al. (2007), V_4650_LC11572_Wong et al. (2007),


9 121736149 129785560 RP11-360A18 RP11-34I9 82 8.049411 -0.685281021

CDK5RAP2, MEGF9, FBXW2, PSMD5, PHF19, TRAF1, C5, CEP110, RAB14, GSN, STOM, DAB2IP, TTLL11, NDUFA8, C9orf18, LHX6, RBM18, MRRF, PTGS1, OR1J1, OR1J2, OR1J4, OR1N1, OR1N2, OR1L8, OR1Q1, OR1B1, OR1L1, OR1L3, OR1L4, OR1L6, OR5C1, OR1K1, PDCL, MNAB, ZBTB6, ZBTB26, RABGAP1, GPR21, STRBP, CRB2, DENND1A, LHX2, NEK6, PSMB7, NR5A1, NR6A1, OLFML2A, LOC401551, RPL35, ARPC5L, GOLGA1, C9orf126, PPP6C, RABEPK, HSPA5, GAPVD1, MAPKAP1, PBX3, C9orf28, LMX1B, ZNF297B, RALGPS1, ANGPTL2, GARNL3, SLC2A8, ZNF79, RPL12,

LRSAM1, C9orf88, STXBP1, C9orf117, PTRH1, TTC16, TOR2A, SH2D3C, CDK9, FPGS, ENG, AK1, ST6GALNAC6, ST6GALNAC4, PIP5KL1, DPM2, FAM102A V_4654_LC11759_Wong et al. (2007), V_4655_LC11759_Wong et al. (2007), V_4656_LC11759_Wong et al. (2007) q33.1-q34.11

9 130040094 140237228 RP11-152I20 RP11-668B20 88 10.197134 -2.025448911

ASB6, PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, GPR107, FLJ46836, FREQ, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, P518, FIBCD1, LAMC3, C9orf58, NUP214, FAM78A, PPAPDC3, POMT1, UCK1, RAPGEF1, CRSP8, NTNG2, SETX, TTF1, FLJ46082, BARHL1, DDX31, GTF3C4, C9orf98, C9orf9, TSC1, GFI1B, GTF3C5, CEL, RALGDS, GBGT1, OBP2B, ABO, SURF6, SURF5, RPL7A, SURF1, SURF2, SURF4, C9orf96, REXO4, ADAMTS13, C9orf7, SLC2A6, LOC389827, ADAMTSL2, LOC642968, DBH, SARDH, VAV2, BRD3, WDR5, RXRA, COL5A1, FCN2, FCN1, OLFM1,

KIAA0649, C9orf116, MRPS2, LCN1, OBP2A, PAEP, GLT6D1, LCN9, SOHLH1, KCNT1, CAMSAP1, UBADC1, BTBD14A, LHX3, QSOX2, GPSM1, LOC728489, CARD9, SNAPC4, SDCCAG3, PMPCA, INPP5E, KIAA0310, FLJ36779, NOTCH1, EGFL7, AGPAT2, FAM69B, LCN10, LCN6, LCN8, UNQ2541, MGC14141, KIAA1984, C9orf86, LOC389813, PHPT1, MAMDC4, EDF1, TRAF2, FBXW5, C8G, LCN12, PTGDS, FLJ45224, C9orf142, CLIC3, ABCA2, FLJ36268, FUT7, NPDC1, ENTPD2, C9orf140, UAP1L1, MAN1B1, DPP7, GRIN1, LOC389816, ANAPC2, SSNA1, C9orf75, MGC14327, NDOR1,

LOC727800, MGC59937, SLC34A3, TUBB2C, LOC401565, LOC441476, COBRA1, FLJ20245, MGC61598, FLJ20433, NOXA1, ENTPD8, NELF, C9orf111


V_4663_LC11864_Wong et al. (2007) q34.11-q34.3

11 30310028 36714019 RP11-147M9 RP11-465C16 77 6.403991 -0.828595285C11orf46, MPPED2, DCDC5, DCDC1, ZCSL3, IMMP1L, ELP4, PAX6, RCN1, WT1, WIT1, hfl-B5, CCDC73, PRRG4, QSER1, DEPDC7, TCP11L1, CSTF3, HIPK3, C11orf69, CD59, FBXO3, LMO2, GPIAP1, NAT10, ABTB2, CAT, ELF5, EHF, APIP, PDHX, CD44, SLC1A2, DKFZP586H212, FJX1, TRIM44,

LDLRAD3, C11orf55, COMMD9, FLJ14213, TRAF6, RAG1, RAG2, C11orf74V_4733_LC13087_Wong et al. (2007), V_4734_LC13090_Wong et al. (2007), V_4735_LC13093_Wong et al. (2007),

V_4736_LC13107_Wong et al. (2007), V_4737_LC13107_Wong et al. (2007) p14.1-p12

11 80121515 94161775 RP11-423C22 RP11-349I16 118 14.04026 -1.82999252MGC33846, PRCP, FLJ25416, RAB30, PCF11, ANKRD42, MDS025, DLG2, TMEM126B, TMEM126A, ZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5, TYR, NOX4, PSMAL, TRIM49, NAALAD2, CHORDC1, MTNR1B, SLC36A4,

CCDC67, C11orf75, JOSD3, C11orf54, CRSP6, PANX1, LOC390243, GPR83, MRE11A, ANKRD49, FUT4, PIWIL4, AMOTL1V_0152_LC13403_Iafrate et al. (2004), V_4757_LC13394_Wong et al. (2007), V_4758_LC13426_Wong et al. (2007),

V_4759_LC13448_Wong et al. (2007), V_4991_LC13460_Wong et al. (2007) q14.1-q2111 94794352 96833884 RP11-760H10 RP11-346I21 24 2.039532 -0.473335343 FAM76B, CEP57, MTMR2, MAML2, CCDC82, JRKL V_0154_LC13475_Iafrate et al. (2004) q21-q22.1

11 98418657 110090050 RP11-120I1 RP11-436I18 103 11.671393 -0.633925791CNTN5, TMEM133, PGR, TRPC6, ANGPTL5, KIAA1377, MGC13040, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, PDGFD, DDI1, CASP4, CASP5, CASP1, COP1, INCA, ICEBERG, GRIA4, KIAA1826, KBTBD3,

AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, LOC643923, SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10, LOC399947, RDX, FDX1, ARHGAP20 V_0155_LC13522_Iafrate et al. (2004), V_0156_LC13530_Iafrate et al. (2004), V_4761_LC13567_Wong et al. (2007) q22.1-q23.1

11 121790657 125500535 RP11-164B14 RP11-152P4 31 3.709878 -0.729116025STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1,

SIAE, SPA17, NRGN, VSIG2, ESAM, C11orf61, ROBO3, ROBO4, HEPACAM, HEPN1, CCDC15, SLC37A2, LOC219854, PKNOX2, FEZ1, EI24, STT3A, CHEK1, ACRV1, PATE, C11orf38, HYLS1, PUS3, DDX25, CDON V_5037_LC13656_Wong et al. (2007) q24.1-q24.211 126559530 127661642 RP11-281D23 RP11-702B10 8 1.102112 -0.671593723 q24.2-q24.311 128851141 129898343 RP11-4B4 RP11-586O14 11 1.047202 -0.569547028 TMEM45B, NFRKB, PRDM10, APLP2, ST14, BTBD15, ADAMTS8, ADAMTS15 q24.3

13 17918020 114117194 RP11-77P19 RP11-228M6 811 96.199174 -1.161370204

TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3,FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1,

B3GTL, RXFP2, FRY, BRCA2, CG018, PFAAP5, APRIN, KL, STARD13, RFC3, NBEA, MAB21L1, DCAMKL1, SOHLH2, SPG20, CCNA1, LOC400120, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6, FOXO1A, MRPS31, SLC25A15, ELF1, WBP4, KBTBD6, KBTBD7, MTRF1, NARG1L, RGC32, KIAA0564, DGKH, AKAP11, TNFSF11, FLJ40919, EPSTI1, DNAJC15, PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13,CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7, FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70,

ATP7B, LOC440138, UTP14C, NEK5, NEK3, THSD1, VPS36, CKAP2, LOC144983, SUGT1, LECT1, PCDH8, OLFM4, FLJ40296, PCDH17, DIAPH3, TDR

V_0167_LC14662_Iafrate et al. (2004), V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004),V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4797_LC14674_Wong et al. (2007), V_4798_LC14797_Wong et al. (2007), V_4799_LC14805_Wong et al. (2007), V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007),

V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. ( q11-q3415 18898414 19133581 RP11-403L7 RP11-552D3 3 0.235167 -0.764241997 LOC283755 V_4865_LC16090_Wong et al. (2007), V_4866_LC16090_Wong et al. (2007), V_4867_LC16090_Wong et al. (2007) q11.2

15 19970520 63008644 RP13-515J11 RP11-639L19 391 43.038124 -1.676561706

TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C, GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5,

NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76, FRMD5, CASC4, CTDSPL2, EIF3S1, KIAA1840, B2M, RNF36, C15orf43, SORD, DUOX2, DUOXA2, NIP, DUOX1, SHF, SLC28A2, GATM, SPATA5L1, C15orf48,

SLC30A4, C15orf21, PLDN, SQRDL, SEMA6D, SLC24A5, MYEF2, SLC12A1, DUT, FBN1, CEP152, SHC4, CRI1, KIAA0256, COPS2, GALK2, C15orf33, F

V_0183_LC16121_Iafrate et al. (2004), V_0185_LC16139_Iafrate et al. (2004), V_0186_LC16139_Iafrate et al. (2004),V_0187_LC16139_Iafrate et al. (2004), V_0188_LC16238_Iafrate et al. (2004), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_2182_LC16090_Locke et al. (2006), V_2183_LC16090_Locke et al. (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. (2007), V_4876_LC16139_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007), V_4878_LC16090_Wong et al. (2007),

V_4879_LC16090_Wong et al. (2007), V_4880_LC16090_Wong et al. ( q11.2-q22.31

18 44549759 76098439 RP11-437N5 RP11-565D23 305 31.54868 -0.917070432

KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1, FBXO15, C18orf55, CYB5A, C18orf51, CNDP2, CNDP1, LOC400657, ZNF407, ZADH2, TSHZ1, LOC284274, ZNF236, MBP, GALR1, SALL3, ATP9B, NFATC1, CTDP1, KCNG2,

PQLC1, TXNL4A, C18orf22, KIAA0863, PARD6G

V_0218_LC18301_Iafrate et al. (2004), V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007), V_5062_LC18530_Wong et al. (2007), V_5064_LC18537_Wong et al. (2007) q21.1-q23

23 550000 154906914 RP13-76L22 RP11-1245L19 1412 154.356914 -1.375460763

XG, GYG2, ARSD, ARSE, ARSH, ARSF, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX-C, KAL1, FAM9A, FAM9B, TBL1X, GPR143, APXL, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1,

MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, CRSP2, USP9X,

DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41, ARAF, SYN1, TIMP1, CFP, ELK1, UXT, ZNF81, ZNF21, ZNF630, SSX6, LOC389852, SPACA5B, SSX5, SSX1, SSX9, SSX3, SSX4B, SSX4, SLC38A5, FTSJ1, PORCN, EBP, TBC1D25, RBM3, WDR13, WAS, SUV39H1, LOC39

V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0243_LC20866_Iafrate et al. (2004),V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004), V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. (2004), V_0255_LC21142_Iafrate et al. (2004),

V_0362_LC20686_Shaw-Smith et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005), V_0822_LC20844_Sharp et al. (2005), V_0823_LC20844_Sharp et al. (2005), V_0824_LC20844_Sharp et al. (2005), V_0825_LC21225_Sharp et al. (2005), V_0826_LC21120_Sharp et al. (2005), V_0827_LC21138_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006), V_2276_LC20844_Locke et al. (2006),

V_2277_LC20844_Locke et al. (2006), V_2278_LC20844_Locke et al. ( p22.33-q2824 482246 7074238 CTD-2584M8 RP11-196J6 54 6.591992 -0.579304786 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 181065684 181571274 RP11-450F15 RP11-175L1 4 0.50559 0.735111084 DHX9, C1orf14, LAMC1, LAMC2, NMNAT2 q25.32 201871624 202459101 RP11-790H5 RP11-396E9 6 0.587477 0.611549766 ALS2CR12, TRAK2, ALS2CR2, ALS2CR11, ALS2CR4, MPP4, ALS2, ALS2CR7 q33.1

17 60115129 60554447 RP11-1272G7 RP11-484A6 10 0.439318 0.698519117 FLJ34306, GNA13V_2231_LC17631_Locke et al. (2006), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007),

V_5024_LC17631_Wong et al. (2007) q24.1


Losses

Gains



RMG1


1 22107800 26663611 RP11-26H16 RP11-423L24 57 4.555811 0.443823821

HSPG2, ELA3B, ELA3A, CDC42, WNT4, ZBTB40, EPHA8, C1QA, C1QC, C1QB, EPHB2, AOF2, LUZP1, HTR1D, HNRPR, ZNF436, LOC148898, TCEA3, DDEFL1, E2F2, ID3, RPL11, TCEB3, C1orf128, LYPLA2, GALE, HMGCL, FUCA1, CNR2, PNRC2, FUSIP1, MYOM3, IL22RA1, IL28RA, GRHL3, C1orf201,NPAL3, DSCR1L2, C1orf130, SRRM1, CLIC4, RUNX3, SYF2, C1orf63, RHD, TMEM50A, RHCE, TMEM57, LDLRAP1, MAN1C1, SEPN1, FAM54B, C1orf135, PAQR7, FLJ32206, STMN1, PAFAH2, EXTL1, SLC30A2, TRIM63, PDIK1L, GRRP1, ZNF593, CNKSR1, CATSPER4, CCDC21, SH3BGRL3, UBXD5, CD52,

FLJ38020, AIM1L, ZNF683, LIN28, DHDDSV_0680_LC0248_Sharp et al. (2005), V_2045_LC0219_Locke et al. (2006), V_2046_LC0230_Locke et al. (2006), V_2047_LC0248_Locke et

al. (2006), V_4215_LC0219_Wong et al. (2007), V_4216_LC0219_Wong et al. (2007), V_4217_LC0248_Wong et al. (2007) p36.12-p36.111 46965671 47991568 RP11-384I18 RP11-458M5 10 1.025897 0.273030372 CYP4B1, CYP4A11, CYP4X1, CYP4Z1, CYP4A22, PDZK1IP1, TAL1, STIL, CMPK, FOXE3, FOXD2 p33

1 51802557 61556855 RP11-88E11 RP11-108D17 94 9.754298 0.654505579OSBPL9, NRD1, RAB3B, TXNDC12, KTI12, BTF3L4, ZFYVE9, CC2D1B, ORC1L, PRPF38A, ZCCHC11, GPX7, MGC52498, C1orf163, ZYG11B, ECHDC2, SCP2, PODN, SLC1A7, CPT2, C1orf123, MAGOH, LRP8, DMRTB1, GLIS1, TMEM48, YIPF1, DIO1, C1orf41, LRRC42, LDLRAD1, TMEM59, C1orf83, CDCP2,

LOC606495, MRPL37, SSBP3, ACOT11, C1orf179, C1orf175, TTC4, PARS2, TTC22, C1orf177, DHCR24, TMEM61, BSND, PCSK9, FLJ45337, PPAP2B, PRKAA2, C1orf168, C8A, C8B, DAB1, OMA1, TACSTD2, JUN, FLJ10986, HOOK1, CYP2J2, C1orf87, NFIAV_0008_LC0405_Iafrate et al. (2004), V_4223_LC0373_Wong et al. (2007), V_4224_LC0373_Wong et al. (2007), V_4225_LC0378_Wong et

al. (2007), V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007) p32.3-p31.3

1 62669888 71449208 RP11-293K19 RP11-802C16 78 8.77932 0.939315915USP1, DOCK7, ANGPTL3, ATG4C, FOXD3, ALG6, ITGB3BP, KIAA1799, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, AK3L2, DNAJC6, LEPR, LEPROT, PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A, GNG12, DIRAS3, GPR177,

RPE65, DEPDC1, LRRC7, LRRC40, SFRS11, ANKRD13C, HHLA3, CTH, PTGER3, ZNF265 V_0009_LC0463_Iafrate et al. (2004) p31.3-p31.11 72445945 74647191 RP11-145G22 RP11-744P7 25 2.201246 0.524165676 NEGR1, FPGT, TNNI3K V_4229_LC0493_Wong et al. (2007) p31.11 75077257 76344239 RP11-664F18 RP11-550H2 10 1.266982 0.392432422 LHX8, SLC44A5, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3 V_4230_LC0507_Wong et al. (2007) p31.11 76927319 78081353 RP11-794G9 RP11-417K2 10 1.154034 0.473417839 ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A p31.11 81457377 81979888 RP11-669B21 RP11-64D15 4 0.522511 0.465866747 V_4232_LC0542_Wong et al. (2007) p31.1

1 233472428 246944046 RP11-39F23 RP11-378I20 145 13.471618 1.220682528

ARID4B, GGPS1, TBCE, B3GALNT2, GNG4, LYST, NID1, GPR137B, ERO1LB, EDARADD, LGALS8, HEATR1, ACTN2, MTR, LOC645745, RYR2, ZP4, CHRM3, FMN2, GREM2, RGS7, FH, KMO, OPN3, CHML, WDR64, EXO1, MAP1LC3C, PLD5, CEP170, SDCCAG8, AKT3, ZNF238, LOC440742, C1orf100, ADSS, C1orf101, C1orf121, FAM36A, HNRPU, EFCAB2, KIF26B, SMYD3, TFB2M, C1orf71, SCCPDH, AHCTF1, ZNF695, ZNF670, ZNF669, FLJ45717, ZNF124, VN1R5, ZNF496, NLRP3, CIAS1, OR2B11, OR2W5, OR2C3, C1orf150, OR2G2, OR2G3, OR13G1, OR6F1, OR5AY1, OR1C1, OR5AT1, OR11L1,

TRIM58, OR2W3, OR2T8, OR2L13, OR2L8, OR2AK2, OR2L2, OR2L3, OR2M5, OR2M2, OR2M3, OR2M4, OR2T33, OR2T12, OR2M7, OR5BF1, OR2T4, OR2T6, OR2T1, OR2T2, OR2T3, OR2T5, OR2G6, OR2T29, OR2T34, OR2T10, OR2T11, OR2T35, OR2T27, OR5BU1 V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006) q42.3-q442 640765 2332916 RP11-186N17 RP11-83A4 13 1.692151 0.621182657 TMEM18, SNTG2, TPO, PXDN, MYT1L p25.32 3270157 4344371 RP11-763G15 RP11-738L3 13 1.074214 0.622338978 TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC p25.3-p25.22 8612849 11754223 RP11-434B12 RP11-641J22 32 3.141374 0.618971375 ID2, KIDINS220, OACT2, DDEF2, ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11, CYS1, RRM2, FLJ25102, HPCAL1, ODC1, NOL10, ATP6V1C2, PDIA6, KCNF1, FLJ25143, PQLC3, ROCK2, E2F6, GREB1, NTSR2 p25.12 13389284 20372716 RP11-5N22 RP11-794H5 64 6.983432 0.661942928 FAM84A, NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2 V_0689_LC1609_Sharp et al. (2005), V_4275_LC1625_Wong et al. (2007) p24.3-p24.1

2 20842473 35174806 RP11-452B12 RP11-745N18 138 14.332333 1.015463562

C2orf43, APOB, UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4, FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI, MGC16372, OTOF, CIB4, KCNK3, C2orf18, CENPA, DPYSL5, MAPRE3,FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33,

RBKS, BRE, FOSL2, PLB1, PPP1CB, SPDY1, FLJ20628, LOC165186, FLJ34931, RSNL2, ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH, SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007) p24.1-p22.32 36843245 39710002 RP11-412M19 RP11-109N19 30 2.866757 0.744195004 VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC34824, ARL6IP2, HNRPLL, GALM, SFRS7, GEMIN6, DHX57, SOS1, CDKL4, MAP4K3 V_4282_LC1766_Wong et al. (2007) p22.2-p22.1

2 42033434 49796893 RP11-34L1 RP11-716H19 76 7.763459 0.677049965LOC91461, EML4, COX7A2L, KCNG3, MTA3, OXER1, HAAO, ZFP36L2, THADA, PLEKHH2, DYNC2LI1, ABCG5, ABCG8, LRPPRC, PPM1B, SLC3A1, PREPL, C2orf34, SIX3, SIX2, FLJ10379, PRKCE, EPAS1, ATP6V1E2, RHOQ, PIGF, CRIPT, SOCS5, MCFD2, TTC7A, FLJ40172, CALM2, TACSTD1, MSH2,

KCNK12, MSH6, FBXO11, FOXN2, LOC129285, FLJ46838, SALF, STON1, ALF, LHCGR, FSHR V_4283_LC1814_Wong et al. (2007), V_4284_LC1832_Wong et al. (2007) p21-p16.32 51035350 57972717 RP11-518D15 CTD-2026C7 67 6.937367 0.749794731 NRXN1, ASB3, CHAC2, C2orf30, GPR75, PSME4, ACYP2, TSPYL6, FLJ40298, SPTBN1, RTN4, FLJ31438, RPS27A, MTIF2, LOC344405, KIAA1212, CCDC104, SMEK2, PNPT1, EFEMP1, CCDC85A V_4285_LC1867_Wong et al. (2007), V_4286_LC1888_Wong et al. (2007) p16.3-p16.12 59093511 60689605 RP11-604J13 RP11-685I11 15 1.596094 0.626818145 BCL11A p16.12 62021331 65158989 RP11-772D22 RP11-359K10 34 3.137658 0.629619357 COMMD1, B3GNT2, TMEM17, EHBP1, OTX1, LOC51057, MDH1, UGP2, VPS54, PELI1, HSPC159, AFTIPHILIN, SERTAD2, SLC1A4, CEP68 V_4287_LC1900_Wong et al. (2007), V_4288_LC1904_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007) p15-p14

2 65645580 77561844 RP11-61N6 RP11-749O19 112 11.916264 0.735571436

FLJ16124, MEIS1, ETAA16, C1D, LOC116143, LOC56902, PPP3R1, C2orf32, PLEK, LOC554251, C2orf13, PROKR1, ARHGAP25, BMP10, GDDR, GKN1, ANTXR1, GFPT1, HIRIP5, DKFZp686K161, AAK1, ANXA4, GMCL1, RY1, MXD1, FLJ25084, PCBP1, FLJ20558, TIA1, PCYOX1, SNRPG, FLJ14668, TGFA, ADD2, FIGLA, CLEC4F, CD207, VAX2, ATP6V1B1, FLJ12056, TEX261, NAGK, MCEE, MPHOSPH10, ZNF638, DYSF, CYP26B1, SPR, EMX1, SFXN5, RAB11FIP5, SMYD5, C2orf7, CCT7, FBXO41, EGR4, ALMS1, NAT8, LOC200420, NAT8B, TPRKB, DUSP11, FLJ43987, STAMBP, ACTG2, DGUOK, BOLA3,

MOBK1B, MTHFD2, SLC4A5, DCTN1, WDR54, RTKN, ZNHIT4, WBP1, GCS1, MRPL53, FLJ14397, TTC31, LBX2, PCGF1, TLX2, DQX1, AUP1, HTRA2, LOXL3, DOK1, LOC130951, SEMA4F, HK2, POLE4, TACR1, FLJ13391, MRPL19, C2orf3 V_4289_LC1968_Wong et al. (2007) p14-p12

2 77812362 88974892 RP11-319M18 RP11-433P11 124 11.16253 0.858886942REG3G, REG1B, REG1A, REG3A, CTNNA2, LRRTM1, LOC388965, SUCLG1, FLJ37357, TMSB10, KCMF1, TCF7L1, TGOLN2, RetSat, RBED1, CAPG, LOC284948, MAT2A, GGCX, VAMP8, VAMP5, LOC51255, TMEM150, FLJ90024, LOC388969, USP39, SFTPB, GNLY, ATOH8, ST3GAL5, POLR1A, FLJ20758,

IMMT, MRPL35, REEP1, JMJD1A, VPS24, RNF103, FLJ13910, CD8A, CD8B, LOC285074, MGC4677, PLGLB2, PLGLB1, RGPD2, LOC51315, SMYD1, FABP1, FLJ10916, FLJ25369, EIF2AK3, RPIAV_0020_LC1992_Iafrate et al. (2004), V_4290_LC1992_Wong et al. (2007), V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et

al. (2007), V_4293_LC2035_Wong et al. (2007), V_4294_LC2035_Wong et al. (2007), V_4295_LC2046_Wong et al. (2007) p12-p11.22 94973470 95341751 RP11-645D10 CTD-2365A22 3 0.368281 1.584707306 MAL, MRPS5, ZNF514, ZNF2, PROM2 q11.12 95970951 97171337 RP11-401C13 RP11-641B23 11 1.200386 1.00851369 LOC150763, ADRA2B, ASTL, DUSP2, STARD7, LOC285033, TMEM127, WDR39, ASCC3L1, KIAA1754L, BRRN1, LINCR, ARID5A, FLJ10081, LOC90342, LMAN2L, CNNM4, CNNM3, ANKRD23, ANKRD39, SEMA4C, LOC51252, DKFZp434N062, ANKRD36 V_4300_LC2064_Wong et al. (2007) q11.2

2 97703681 112916311 RP11-173M4 RP11-119B10 132 15.21263 1.082762618

ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A, MGC42367, TSGA10, C2orf15, LIPT1, LOC129531, MRPL30, LYG2, LOC129530, TXNDC9, EIF5B, REV1L, AFF3, LONRF2, CHST10, NMS, PDCL3, NPAS2, RPL31, C2orf29, RNF149, CREG2, MAP4K4, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294, POU3F3, MRPS9, GPR45, TGFBRAP1, MGC5509, FHL2, NCK2, ECRG4, UXS1, ST6GAL2, SLC5A7, SULT1C3, SULT1C1, SULT1C2, GCC2, LIMS1, RANBP2, FLJ32745, EDAR, LOC729164, C2orf26, MALL, NPHP1, LIMS3, RGPD5, RGPD7, BUB1, ACOXL,

BCL2L11, ANAPC1, MERTK, TMEM87B, FLJ37440, ZC3H8, ZC3H6

V_0021_LC2111_Iafrate et al. (2004), V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp etal. (2005), V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke et al. (2006), V_4301_LC2072_Wong et al. (2007),

V_4302_LC2081_Wong et al. (2007), V_4303_LC2134_Wong et al. (2007) q11.2-q132 148773141 149334331 RP11-780J17 RP11-785J16 4 0.56119 0.589459918 MBD5, EPC2 q23.13 36784 9606088 RP11-359E9 RP11-45B16 74 9.569304 0.83229822 CHL1, CNTN6, CNTN4, IL5RA, TRNT1, CRBN, LRRN1, SETMAR, SUMF1, ITPR1, BHLHB2, ARL8B, EDEM1, GRM7, LMCD1, LOH3CR2A, C3orf32, CAV3, OXTR, RAD18, SRGAP3, THUMPD3, SETD5, LOC375323 V_0359_LC2871_Shaw-Smith et al. (2004) p26.3-p25.33 169224512 173421123 RP11-114L5 RP11-686B21 32 4.196611 0.864134579 GOLPH4, EVI1, MDS1, ARPM1, MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B V_4362_LC3840_Wong et al. (2007) q26.2-q26.313 173972987 178281523 RP11-590E4 RP11-796M13 40 4.308536 0.870994976 ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1 V_4363_LC3872_Wong et al. (2007) q26.31-q26.324 39105 1864481 RP11-335H3 RP11-241P10 22 1.825376 0.490226633 ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1 V_2066_LC4068_Locke et al. (2006) p16.34 3414014 3686598 RP11-565K22 RP11-181M20 4 0.272584 0.996957075 HGFAC, C4orf25, LRPAP1 V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007) p16.2

4 4685030 19211401 RP11-359G4 RP11-722O4 124 14.526371 0.717495405MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131, LOC650293,

DRD5, SLC2A9, WDR1, KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL

V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke etal. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_4373_LC4228_Wong et al. (2007),

V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_Wong et al. (2007), V_4379_LC4291_Wong et al. (2007) p16.2-p15.31

4 110536707 128896007 RP11-112G23 RP11-11P20 139 18.3593 0.751849464SEC24B, FLJ20647, CASP6, PLA2G12A, CFI, NOLA1, RRH, FLJ44691, EGF, ELOVL6, ENPEP, PITX2, FLJ39370, C4orf16, TIFA, ALPK1, NEUROG2, LOC91431, FLJ11331, HDCMA18P, ANK2, CAMK2D, ARSJ, UGT8, NDST4, TRAM1L1, NDST3, PRSS12, KIAA1627, SEC24D, SYNPO2, MYOZ2, USP53,

LOC401152, FABP2, PDE5A, MAD2L1, PRDM5, FLJ23191, TNIP3, GPR103, ANXA5, TMEM155, EXOSC9, CCNA2, BBS7, TRPC3, Tenr, IL2, IL21, FLJ35630, FGF2, NUDT6, SPATA5, SPRY1, ANKRD50, FAT4, PDZD6, SLC25A31V_0049_LC5396_Iafrate et al. (2004), V_0050_LC5522_Iafrate et al. (2004), V_4411_LC5470_Wong et al. (2007), V_4587_LC5465_Wong et

al. (2007) q25-q28.1

4 129220972 159359620 RP11-716N7 RP11-89C4 237 30.138648 0.70670104

LARP2, PGRMC2, PHF17, FLJ30655, LOC132321, PCDH10, PCDH18, SLC7A11, CCRN4L, ELF2, OSAP, NDUFC1, NARG1, RAB33B, SETD7, MGST2, MAML3, SCOC, CLGN, ELMOD2, UCP1, TBC1D9, RNF150, ZNF330, IL15, INPP4B, USP38, GAB1, SMARCA5, LOC441046, GYPE, GYPB, GYPA, HHIP, ANAPC10, ABCE1, OTUD4, SMAD1, MMAA, LOC646603, LOC152485, LSM6, SLC10A7, C4orf13, POU4F2, NYD-SP14, EDNRA, TMEM34, LOC90826, ARHGAP10, NR3C2, DCAMKL2, LRBA, MAB21L2, RPS3A, SH3D19, ESSPL, PET112L, FBXW7, FLJ32028, TIGD4, ARFIP1, KIAA1727, TRIM2, MND1,

KIAA0922, TLR2, RNF175, SFRP2, DCHS2, PLRG1, FGB, FGA, FGG, LRAT, MGC27016, NPY2R, ASAP, GUCY1A3, GUCY1B3, ACCN5, TDO2, CTSO, PDGFC, GLRB, GRIA2, C4orf18, TMEM144

V_0051_LC5838_Iafrate et al. (2004), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke etal. (2006), V_4412_LC5587_Wong et al. (2007), V_4413_LC5596_Wong et al. (2007), V_4414_LC5605_Wong et al. (2007),

V_4415_LC5607_Wong et al. (2007), V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007), V_4418_LC5696_Wong et al. (2007), V_4419_LC5731_Wong et al. (2007) q28.2-q32.1

4 159831765 181798441 RP11-117D6 RP11-442N5 173 21.966676 0.728242663ETFDH, PPID, FLJ25371, FSTL5, LOC92345, NPY1R, NPY5R, TKTL2, FLJ11184, ANP32C, TRIM61, FLJ31659, TRIM60, FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1,

HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4, ASB5, SPCS3, VEGFC, NEIL3, AGAV_0052_LC5911_Iafrate et al. (2004), V_0053_LC5929_Iafrate et al. (2004), V_0054_LC6039_Iafrate et al. (2004), V_4420_LC5892_Wong

et al. (2007), V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007) q32.1-q34.3

4 182654849 191137774 RP11-14N12 CTD-2011O21 85 8.482925 0.493092238ODZ3, DCTD, FLJ30277, WWC2, CDKN2AIP, ING2, RWDD4A, FLJ12716, STOX2, ENPP6, IRF2, CASP3, FLJ33167, MLF1IP, ACSL1, HELT, SLC25A4, SNX25, LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2, TLR3, DKFZP564J102, CYP4V2, KLKB1, F11, MTNR1A, FAT, ZFP42, FLJ25801,

FLJ36180, FRG1V_0057_LC6244_Iafrate et al. (2004), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_4423_LC6218_Wong et

al. (2007), V_4424_LC6244_Wong et al. (2007), V_4425_LC6244_Wong et al. (2007), V_4426_LC6244_Wong et al. (2007) q35.1-q35.25 142315631 142728964 CTD-2024C20 RP11-92B6 4 0.413333 0.406716817 ARHGAP26, NR3C1 q31.35 150086022 150508111 RP11-678D15 RP11-701D20 4 0.422089 0.368312308 DCTN4, MST150, ZNF300, GPX3, TNIP1, ANXA6 q33.1

8 86620595 87188682 RP11-509F16 RP11-626K6 8 0.568087 0.444942766 REXO1L1, PSKH2, ATP6V0D2

V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007),

V_4605_LC10727_Wong et al. (2007) q21.2

9 44908131 45975582 RP11-353M14 RP11-21A19 5 1.067451 0.685599593

V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_4629_LC11330_Wong et al. (2007), V_4631_LC11330_Wong et al. (2007), V_4632_LC11330_Wong et al. (2007), V_4633_LC11330_Wong et al. (2007), V_4634_LC11330_Wong et al. (2007),

V_4638_LC11330_Wong et al. (2007) p11.29 116900237 117340827 RP11-472E10 RP11-56L10 3 0.44059 0.421335199 TNC q33.1

10 62331511 64450870 RP11-322C8 RP11-669N8 19 2.119359 0.652171394 RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2 q21.2

10 77902036 128594436 RP11-143D9 RP11-540F8 455 50.6924 0.781913281

C10orf11, KCNMA1, DLG5, POLR3A, RPS24, RAI17, PPIF, C10orf56, SFTPA2, SFTPA1, SFTPD, C10orf57, PLAC9, ANXA11, MAT1A, DYDC1, DYDC2, C10orf58, TSPAN14, SH2D4B, NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1, WAPAL, OPN4, LDB3, BMPR1A, MMRN2, SNCG, C10orf116, GLUD1, FAM35A, MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1, PCGF5, HECTD2, PPP1R3C, TNKS2, FGFBP3, BTAF1, CPEB3, IDE, KIF11, HHEX, EXOC6, CYP26C1, CYP26A1, FER1L3, CEP55, GPR120, RBP4, PDE6C, C10orf4, LGI1, TMEM20, PLCE1, NOC3L, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, C10orf129, PDLIM1, SORBS1, ALDH18A1, C10orf61, ENTPD1, C10orf130, CCNJ, ZNF518, BLNK, DNTT, TMEM10, TLL2, SMBP,

PIK3AP1, LCOR, C10orf12, SLIT1, ARHGAP19, FRAT1, FRAT2, KIAA0690, PGAM1, EXOSC1, ZDHHC16, MMS19L, UBTD1, ANKRD2, C10orf65, C10orf62, C10orf83, PI4KII, AVPI1, ZFYVE27, SFRP5, C10orf132, CRTAC1, C10orf28, LOXL4, C10orf33, HPS1, HPSE2, CNNM1, GOT1, NKX2-3, SLC25A28,ENTPD7, COX15, CUTC, ABCC2, DNMBP, CPN1, SPFH1, CHUK, CWF19L1, BLOC1S2, PKD2L1, SCD, WNT8B, SEC31L2, NDUFB8, HIF1AN, PAX2, C10orf

V_0138_LC12468_Iafrate et al. (2004), V_0762_LC12488_Sharp et al. (2005), V_0765_LC12481_Sharp et al. (2005), V_0766_LC12664_Sharp et al. (2005), V_2157_LC12477_Locke et al. (2006), V_2158_LC12478_Locke et al. (2006), V_2159_LC12481_Locke et al. (2006), V_2160_LC12485_Locke et al. (2006), V_2161_LC12488_Locke et al. (2006), V_4704_LC12478_Wong et al. (2007), V_4705_LC12506_Wong et al. (2007), V_4706_LC12521_Wong et al. (2007), V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007), V_4709_LC12564_Wong et al. (2007), V_4710_LC12569_Wong et al. (2007), V_4711_LC12583_Wong et al. (2007), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007), V_4714_LC12735_Wong et al. (2007), V_4715_LC12747_Wong et al. (2007) q22.3-q26.2

11 10112108 10657912 RP11-726L17 RP13-493C22 7 0.545804 0.512980405 SBF2, ADM, AMPD3, RNF141, XLKD1, MRVI1 V_0143_LC12968_Iafrate et al. (2004) p15.411 13816922 14192220 RP11-594A16 RP11-347O21 3 0.375298 0.33762249 SPON1 p15.2

12 78058283 108981450 RP11-367D21 RP11-137H19 292 30.923167 0.656279124

SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50, C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1, NUDT4, UBE2N, MRPL42, SOCS2, CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT, METAP2, USP44, NTN4, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, PCTK2, C12orf63, NEDD1, TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701,

GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, TMEM16D, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM, CCDC53, NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1, C12orf42, STAB2, NT5DC3, HSP90B1, TDG, GLT8D2, HCFC2, NFYB, TXNRD1, EID3, CHST11,SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NUAK1, CKAP4, TCP11L2, POLR3B, RFX4, RIC8B, C12orf23, MTERFD3, CRY1, BTBD11, PWP1, PRDM4, ASCL4, KIAA0789, CMKLR1, HYPE, SART3, NIFUN, TMEM119, SELPLG, CORO1C, SSH1, DAO, SVOP, USP30, ALKBH2, UNG, ACACB, FOXN4,

KCTD10, UBE3B, MMAB, MVK, C12orf34, TRPV4, GLTP, TCHP, GIT2, ANKRD13, FLJ40142

V_0165_LC14278_Iafrate et al. (2004), V_4774_LC14229_Wong et al. (2007), V_4782_LC14235_Wong et al. (2007), V_4783_LC14250_Wong et al. (2007), V_4784_LC14261_Wong et al. (2007), V_4785_LC14298_Wong et al. (2007),

V_4786_LC14380_Wong et al. (2007) q21.2-q24.1112 109818162 110377317 RP11-115G8 RP11-349M9 6 0.559155 0.408319584 CCDC63, MYL2, CUTL2, FAM109A, LNK, ATXN2 q24.11-q24.1212 111588013 115377242 RP11-709L11 RP11-484E21 42 3.789229 0.488516386 RPH3A, OAS1, OAS3, OAS2, DTX1, RASAL1, DDX54, C12orf52, IQCD, TPCN1, SLC24A6, LOC196463, SDS, SDSL, LHX5, RBM19, TBX5, TBX3, THRAP2 V_4787_LC14460_Wong et al. (2007) q24.13-q24.2212 116182701 116817531 RP11-612H13 RP11-14A17 11 0.63483 0.451895839 NOS1, KSR2 q24.22-q24.2312 117379762 118546234 RP11-523B5 RP11-335B2 14 1.166472 0.448703683 KIAA1853, HSPB8, CCDC60 q24.2312 121961880 122283859 RP11-197N18 RP11-649A11 4 0.321979 0.797116193 ABCB9, OGFOD2, ARL6IP4, PITPNM2, MPHOSPH9, C12orf65 V_4790_LC14504_Wong et al. (2007) q24.31

12 122752654 132289529 RP11-640G7 CTD-2140B24 88 9.536875 0.544439999C12orf38, ATP6V0A2, DNAH10, CCDC92, ZNF664, FAM101A, NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS, TMEM132B, SLC15A4, GLT1D1, TMEM132D, FZD10, PIWIL1, RIMBP2, EPIM, RAN, GPR133, SFRS8, MMP17, ULK1, PUS1, EP400, DDX51, NOC4L, GALNT9, P2RX2, POLE, PXMP2, PGAM5,

GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10, ZNF268

V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. (2006), V_4404_LC14595_Wong et al. (2007), V_4792_LC14514_Wong et al. (2007), V_4793_LC14538_Wong et al. (2007), V_4794_LC14556_Wong et al. (2007),

V_4795_LC14556_Wong et al. (2007), V_4796_LC14595_Wong et al. (2007) q24.31-q24.3313 39331525 39811772 RP11-637G1 RP11-805F8 4 0.480247 0.691999072 q13.3-q14.11

13 44704567 81035231 RP11-826H23 RP11-121H16 312 36.330664 0.926103667

GTF2F2, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13, CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7,FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70, ATP7B, LOC440138, UTP14C, NEK5, NEK3, THSD1, VPS36, CKAP2, LOC144983, SUGT1, LECT1, PCDH8, OLFM4, FLJ40296, PCDH17, DIAPH3, TDRD3, PCDH20, PCDH9, KLHL1, DACH1, LOC440145, FLJ22624, KIAA1008, C13orf24, KLF5, KLF12,

TBC1D4, COMMD6, UCHL3, LMO7, KCTD12, CLN5, FBXL3, MYCBP2, SCEL, FLJ30046, EDNRB, POU4F1, C13orf7, C13orf10, NDFIP2, SPRY2

V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007),


13 82307672 109693616 RP11-360P17 RP11-472K17 219 27.385944 0.643000195SLITRK1, SLITRK6, SLITRK5, GPC5, GPC6, DCT, TGDS, GPR180, SOX21, ABCC4, CLDN10, DZIP1, DNAJC3, UGCGL2, HS6ST3, OXGR1, MBNL2, RAP2A, RANBP5, FARP1, RNF113B, STK24, SLC15A1, DOCK9, PHGDHL1, GPR18, EBI2, TM9SF2, CLYBL, ZIC5, ZIC2, PCCA, TMTC4, VGCNL1, ITGBL1,

FGF14, TPP2, LOC196541, LOC93081, KDELC1, BIVM, ERCC5, SLC10A2, DAOA, EFNB2, FLJ10154, LOC728215, LIG4, ABHD13, TNFSF13B, MYR8, IRS2, COL4A1

V_0172_LC15055_Iafrate et al. (2004), V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007),

V_4818_LC15212_Wong et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) q31.1-q34

14 18501597 19701623 RP11-262I20 RP11-476F8 13 1.200026 0.53519584 POTE14, LOC440157, OR4Q3, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1, OR4K15, OR4K14, OR4K13, OR4L1, OR4K17, OR4N5


V_4827_LC15340_Wong et al. (2007), V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.2

14 21457978 22336000 RP11-238C11 RP11-310A23 7 0.878022 0.599676797 DAD1, ABHD4, OXA1L, SLC7A7V_4828_LC15358_Wong et al. (2007), V_4829_LC15358_Wong et al. (2007), V_4830_LC15358_Wong et al. (2007),

V_4831_LC15358_Wong et al. (2007) q11.214 45233122 48754112 RP11-753K4 RP11-816J8 25 3.52099 0.479514275 RPL10L, MAMDC1 V_4834_LC15537_Wong et al. (2007), V_4835_LC15559_Wong et al. (2007) q21.3-q22.1

14 73094030 106318374 RP11-479E13 CTD-2313E3 288 33.224344 0.731399739

MGC48595, ACOT2, ACOT4, ACOT6, C14orf168, PNMA1, C14orf43, ZADH1, ZNF410, C14orf44, COQ6, ENTPD5, C14orf45, ALDH6A1, C14orf46, CHX10, ABCD4, C14orf115, NPC2, HBLD1, LTBP2, KIAA0317, C14orf111, YLPM1, FLJ36749, DLST, RPS6KL1, PGF, EIF2B2, MLH3, ACYP1, C14orf140, NEK9, TMED10, FOS, JDP2, BATF, C14orf58, C14orf1, TTLL5, TGFB3, MGC16028, C14orf118, ESRRB, VASH1, ANGEL1, C14orf166B, C14orf4, KIAA1737, ZDHHC22, TMEM63C, NGB, POMT2, GSTZ1, TMED8, C14orf174, C14orf148, C14orf133, AHSA1, THSD3, SPTLC2, ALKBH1, C14orf156, SNW1, FLJ25976, ADCK1, NRXN3, DIO2, C14orf145, TSHR, GTF2A1, STON2, SEL1L, FLRT2, GALC, GPR65, KCNK10, SPATA7, PTPN21, FLJ11806, EML5, TTC8, CHES1, C14orf143, TDP1, KCNK13, PSMC1, C14orf102, CALM1, TTC7B, RPS6KA5, C14orf159, GPR68, KIAA1509, KIAA2010, PP8961, C14orf161, MTAC2D1,

FBLN5, TRIP11, ATXN3, NDUFB1, CPSF2, SLC24A4, RIN3, LGMN, GOLGA5, CHGA, ITPK1, MOAP1, C14orf142, C14orf130, BTBD7, KIAA1409, COX8C, PRIMA1, C14orf152, ASB2, C14orf48, OTUB2, DDX24, FAM14B, IFI27, FAM14A, KIAA1622, SERPINA10, SERPINA6, SERPINA1, SERPINA11, SERPINA9, SERPINA12, SERPINA4, SERPINA5, SERPINA3, SERPINA13, GSC, DICER1, CLMN, C14orf49, GLRX5, TCL6, TCL1B, TCL1A, BDKRB2, BDKRB1, C14orf10

V_0178_LC15831_Iafrate et al. (2004), V_0180_LC16001_Iafrate et al. (2004), V_0182_LC16055_Iafrate et al. (2004),V_0770_LC16055_Sharp et al. (2005), V_0771_LC16055_Sharp et al. (2005), V_0772_LC16055_Sharp et al. (2005), V_0773_LC16055_Sharp et al. (2005), V_0774_LC16055_Sharp et al. (2005), V_2176_LC16055_Locke et al. (2006), V_2177_LC16055_Locke et al. (2006), V_2178_LC16055_Locke et al. (2006), V_2179_LC16055_Locke et al. (2006), V_4839_LC15767_Wong et al. (2007), V_4840_LC15786_Wong et al. (2007), V_4841_LC15841_Wong et al. (2007), V_4842_LC15858_Wong et al. (2007), V_4844_LC15916_Wong et al. (2007), V_4845_LC15928_Wong et al. (2007), V_4846_LC15993_Wong et al. (2007), V_4847_LC16001_Wong et al. (2007), V_4848_LC16001_Wong et al. (2007), V_4849_LC16055_Wong et al. (2007), V_4850_LC16055_Wong et al. (2007), V_4851_LC16055_Wong et al. (2007), V_4852_LC16055_Wong et al. (2007), V_4853_LC16055_Wong et al. (2007), V_4854_LC16055_Wong et al. (2007), V_4855_LC16055_Wong et al. (2007), V_4856_LC16055_Wong et al. (2007), V_4857_LC16055_Wong et al. (2007),

V_4858_LC16055_Wong et al. (2007), V_4859_LC16055_Wong et al. ( q24.3-q32.3315 29071878 29450959 RP11-463D21 RP11-16E12 3 0.379081 0.446463994 TRPM1, KLF13 V_4889_LC16139_Wong et al. (2007), V_4890_LC16139_Wong et al. (2007) q13.315 58120522 58838330 RP11-366L9 RP11-797A8 4 0.717808 0.386315595 ANXA2, NARG2, RORA q22.217 35476801 35916681 RP11-749I16 RP11-259G21 5 0.43988 0.392504549 THRA, NR1D1, CASC3, RAPGEFL1, WIRE, CDC6, RARA, GJC1, TOP2A, IGFBP4, TNS4 q21.1-q21.2

17 36732410 38598858 RP11-639G19 RP11-1365J18 24 1.866448 0.708310843

KRTHA3A, KRTHA3B, KRTHA4, KRTHA1, KRTHA7, KRTHA8, KRT32, KRTHA5, KRTHA6, KRT13, KRT15, KRT19, KRT9, KRT14, KRT16, KRT17, EIF1, GAST, HAP1, JUP, SC65, FKBP10, NT5C3L, KLHL10, KLHL11, ACLY, TTC25, CNP, DNAJC7, NKIRAS2, LOC201181, LGP2, GCN5L2, HSPB9, RAB5C,KCNH4, HCRT, LGP1, STAT5B, STAT5A, STAT3, PTRF, ATP6V0A1, NAGLU, HSD17B1, COASY, MLX, PSMC3IP, LOC162427, TUBG1, TUBG2, PLEKHH3, CCR10, CNTNAP1, EZH1, RAMP2, VPS25, WNK4, CCDC56, CNTD, BECN1, PSME3, AOC2, AOC3, G6PC, AARSD1, RUNDC1, RPL27, IFI35, VAT1,

RND2, BRCA1, NBR1 V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004) q21.2-q21.31

17 39095240 40507503 RP11-261A9 RP11-419E16 13 1.412263 0.363972939SOST, DUSP3, MPP3, CD300LG, MPP2, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, C17orf53, ASB16, C17orf65, TMUB2, UBTF, SLC4A1, RPIP8, CGI-69, GRN, ITGA2B, KIAA0553, FZD2, FLJ35848, CCDC43, DBF4B, ADAM11, GJA7, HIGD1B, EFTUD2, LOC388389, GFAP, LOC146909, C1QL1,

DCAKD, NMT1 V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et al. (2007) q21.31

17 41519537 41719579 RP11-86C1 RP11-162O14 3 0.200042 0.310888632 KIAA1267

V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_5011_LC17522_Wong et al. (2007),

V_5012_LC17522_Wong et al. (2007) q21.3117 55060069 55349902 CTD-2001K22 RP11-700K10 4 0.289833 0.400344006 CLTC, PTRH2, TMEM49, TUBD1, RPS6KB1 V_0805_LC17601_Sharp et al. (2005) q23.117 55638613 56337011 RP11-381A5 RP11-153J8 6 0.698398 0.863624422 USP32, C17orf64, APPBP2, PPM1D, BCAS3 q23.2

17 58845545 60334409 RP11-118J2 RP11-1272G7 26 1.488864 0.814520055 CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2, GH2, CSH1, CSHL1, GH1, CD79B, SCN4A, ICAM2, ERN1, TEX2, PECAM1, POLG2, DDX5, CCDC45, SMURF2, FLJ34306V_0210_LC17626_Iafrate et al. (2004), V_2231_LC17631_Locke et al. (2006), V_5022_LC17631_Wong et al. (2007),

V_5023_LC17631_Wong et al. (2007), V_5024_LC17631_Wong et al. (2007) q23.3-q24.119 32643172 33161095 CTD-2544G22 RP11-736P1 4 0.517923 0.685533778 q1219 34914348 35212940 RP11-372I5 RP11-17N20 5 0.298592 1.255180811 CCNE1, C19orf2 q12

19 37341370 45499391 RP11-651A23 RP11-688J23 92 8.158021 1.117048207

ZNF507, MGC35440, DPY19L3, PDCD5, ANKRD27, RGS9BP, ECAT8, SLC7A9, FLJ14640, C19orf40, RHPN2, GPATC1, LOC126248, LRP3, SLC7A10, CEBPA, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, MGC13096, UBA2, WTIP, LOC284402, ZNF302, ZNF181, ZNF599, ZNF30, ZNF792,GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467, ZD52F10, SBSN, GAPDHS, NIFIE14, ATP4A, MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6,

LOC148137, SNX26, PRODH2, NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565, ZNF146, KIAA1559, ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345,DKFZp779O175, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1,

MAP4K1, EIF3S12, ACTN4, CAPN12, LGALS7, LOC653499, LGALS4, ECH1, HNRPL, FLJ45909, SIRT2, NFKBIB, SARS2, MRPS12, FBXO17, FBXO27, FLJ1 V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007), V_5099_LC18991_Wong et al. (2007) q13.11-q13.2

19 47564391 48626174 RP11-208I3 RP11-160A19 7 1.061783 0.640907468 MEGF8, SBP1, CNFN, LIPE, UNQ473, CEACAM1, CEACAM8, PSG3, PSG8, PSG1, PSG6, PSG7, PSG11, PSG2, PSG5, PSG4, PSG9, CD177, TEX101V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. (2006), V_5101_LC19026_Wong et al. (2007),

V_5102_LC19026_Wong et al. (2007) q13.2-q13.3119 49078420 50184722 RP11-780K18 RP11-1147O10 9 1.106302 0.619445015 ZNF45, ZNF221, ZNF155, ZNF230, ZNF222, ZNF223, ZNF284, ZNF224, ZNF225, ZNF234, ZNF226, ZNF227, ZNF233, ZNF235, ZNF228, ZNF285A, ZNF229, ZNF180, PVR, CEACAM19, CEACAM16, BCL3, CBLC, BCAM, PVRL2, TOMM40, APOE, APOC1, APOC4, APOC2, CLPTM1 V_0221_LC19039_Iafrate et al. (2004), V_2245_LC19036_Locke et al. (2006) q13.31-q13.32

19 55861396 57561327 CTD-2568A17 RP11-570L4 33 1.699931 0.462900374SHANK1, CLEC11A, GPR32, ACPT, MGC13170, KLK1, KLK15, KLK3, KLK2, KLK4, KLK5, KLK6, KLK7, KLK8, KLK9, KLK10, KLK11, KLK12, KLK13, KLK14, ATPBD3, SIGLEC9, SIGLEC7, CD33, FLJ40235, ETFB, MGC33839, NKG7, LIM2, SIGLEC10, SIGLEC8, LOC729767, SIGLEC12, SIGLEC6, ZNF175,

SIGLEC5, HAS1, FPR1, FPRL1, FPRL2, ZNF577, ZNF649, ZNF613, ZNF350, ZNF615, ZNF614, ZNF432, ZNF616, PPP2R1A, LOC90321, ZNF480, ZNF610 q13.3319 58336405 58836235 RP11-614J6 RP11-791E24 10 0.49983 0.327290063 ZNF347, ZNF665, FLJ46385, ZNF677, VN1R2, VN1R4, BIRC8, LOC91661, ZNF761, FLJ16542, ZNF331, DPRX q13.41

19 59359482 63770533 RP11-261B4 CTD-2575K21 46 4.411051 0.548174699

TMC4, LENG4, TSEN34, RPS9, LILRB3, LILRA6, LILRB5, LILRB2, LILRA3, LILRA5, LILRA4, LAIR1, TTYH1, LENG8, LENG9, CDC42EP5, LAIR2, LENG12, LILRA2, LILRA1, LILRB1, LILRB4, KIR3DL3, KIR3DP1, KIR2DL3, KIR2DL1, KIR2DL4, KIR3DL1, KIR2DS4, KIR3DL2, FCAR, NCR1, NALP7, NLRP2, GP6, RDH13, EPS8L1, PPP1R12C, TNNT1, TNNI3, LOC352909, SYT5, PTPRH, TMEM86B, SAPS1, HSPBP1, BRSK1, SUV420H2, COX6B2, IL11, MDAC1, RPL28, UBE2S, ISOC2, ZNF628, KLP1, ZNF579, FLJ14768, ZNF524, LOC147808, ZNF580, ZNF581, HSU79303, U2AF2, EPN1, NALP9, NLRP11, NALP4,NALP13, NALP8, NALP5, LOC126208, ZNF444, GALP, LOC342933, ZSCAN5, LOC649186, ZNF582, ZNF583, ZNF667, ZNF471, ZFP28, FLJ26175, ZNF71, BC37295_3, ZIM2, PEG3, USP29, ZIM3, DUXA, ZNF264, AURKC, ZNF805, ZNF460, ZNF543, ZNF304, ZNF547, ZNF548, ZNF17, FLJ16360, VN1R1, DKFZp686I156, ZNF419, MGC4728, ZNF549, ZNF550, ZNF416, ZIK1, ZNF530, ZNF134, ZNF211, ZSCAN4, ZNF551, ZNF154, ZNF671, FLJ38288, ZNF586, ZNF552, ZNF587, ZNF417, ZNF418, ZNF256, C19orf18, ZNF606, ZSCAN1, ZNF135, ZNF447, ZNF329, ZNF274, ZNF544, ZNF8, LOC113386, HKR2,

A1BG, ZNF497, RPS5, ZNF584, ZNF132, FLJ45850, ZNF324, ZNF446, SLC27A5, ZNF499, TRIM28, CHMP2A, UBE2M, ZNF42V_0809_LC19144_Sharp et al. (2005), V_2248_LC19144_Locke et al. (2006), V_5116_LC19144_Wong et al. (2007), V_5117_LC19144_Wong et al. (2007), V_5118_LC19144_Wong et al. (2007), V_5119_LC19144_Wong et al. (2007) q13.42-q13.43

20 37210 2199529 CTD-2506E2 RP11-327I13 20 2.162319 0.613820922 DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55, ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35 V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007) p13

20 3287544 9131247 RP11-722M22 RP11-422O18 56 5.843703 0.689686412ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA, PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2, SLC23A2, C20orf30, PCNA, CDS2, PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2, HAO1,

TXNDC13, PLCB1, PLCB4 V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007) p13-p12.220 45278601 48071197 RP11-674K9 RP11-223M11 16 2.792596 0.8041508 PRKCBP1, NCOA3, SULF2, PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, ZNF313, SNAI1 V_2251_LC19741_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007) q13.12-q13.1320 49119320 49661575 RP11-166O21 RP11-62M15 5 0.542255 0.663556452 NFATC2, ATP9A q13.13-q13.220 49961012 51456246 RP11-260O1 RP11-451D2 11 1.495234 1.276463886 ZFP64, TSHZ2 V_0226_LC19822_Iafrate et al. (2004) q13.2

20 51819457 62434349 RP11-394P23 RP11-350G15 94 10.614892 1.775561826

BCAS1, CYP24A1, PFDN4, DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C, BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D, C20orf177, CDH26, FLJ33860, LOC284757, CDH4, TAF4, LSM14B, PSMA7, SS18L1, GTPBP5, HRH3, OSBPL2, ADRM1, LAMA5, RPS21, CABLES2, C20orf151, GATA5, FLJ30313, C20orf166, SLCO4A1, NTSR1, C20orf20, OGFR, COL9A3, TCFL5,

DIDO1, C20orf11, C20orf59, BHLHB4, YTHDF1, BIRC7, C20orf58, ARFGAP1, COL20A1, CHRNA4, KCNQ2, EEF1A2, C20orf149, PTK6, SRMS, C20orf195, PRIC285, GMEB2, STMN3, RTEL1, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, BTBD4, C20orf135, TPD52L2, DNAJC5, UCKL1, GM632, SAMD10, PRPF6, LOC284739, SOX18, TCEA2, RGS19, OPRL1, LOC198437, NPBWR2, MYT1, PCMTD2

V_2252_LC19985_Locke et al. (2006), V_5143_LC19835_Wong et al. (2007), V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al. (2007), V_5149_LC19985_Wong et al. (2007), V_5150_LC19985_Wong et al. (2007) q13.2-q13.33

22 14440103 14952669 CTD-2177M20 RP11-561P7 7 0.512566 0.691860514 ACTBL1, OR11H1V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007), V_5165_LC20342_Wong et al. (2007), V_5166_LC20342_Wong et al. (2007) q11.1

chrom start end start.bac end.bac BACs length MB minM genes mirnas acgh.cnvs cytobands2 238440011 239101222 RP11-609L7 RP11-771C19 5 0.661211 -0.613391876 RAMP1, UBE2F, SCLY, LOC339768, KLHL30, ILKAP, HES6, PER2, TRAF3IP1, ASB1 q37.32 241384956 242375393 CTD-2192B23 RP11-811O7 9 0.990437 -0.613143905 KIF1A, AGXT, FLJ22671, SNED1, MTERFD2, PASK, PPP1R7, TMEM16G, HDLBP, FARP2, STK25, BOK, THAP4, ATG4B, DTYMK, ING5, D2HGDH, GAL3ST2 V_4331_LC2814_Wong et al. (2007) q37.34 182182037 182713864 RP11-195N20 RP11-18K13 4 0.531827 -0.57531471 q34.3-q35.1

7 65178475 77257681 RP11-763P10 RP11-595F4 139 12.079206 -0.874083814

ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3,CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24, RHBDD2, POR, TMPIT, STYXL1,

MDH2, FLJ37078, HSPB1, YWHAG, SRCRB4D, ZP3, DTX2, UPK3B, POMZP3, KIAA1505, FGL2, LOC54103, PTPN12, RSBN1LV_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et

al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007), V_4545_LC9609_Wong et al. (2007) q11.21-q11.23

7 78739623 105108082 RP11-759O5 RP11-96B13 248 26.368459 -0.626615086

CYP51A1, LOC401387, KRIT1, GATAD1, PEX1, DKFZP564O052, MGC40405, CDK6, SAMD9, SAMD9L, LOC253012, FLJ20097, CALCR, TFPI2, GNGT1, GNG11, BET1, COL1A2, CASD1, SGCE, PEG10, PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, DYNC1I1, SLC25A13, FLJ42280, SHFM1, DLX6, DLX5,ACN9, TAC1, ASNS, LOC441268, OCM, LMTK2, BHLHB8, DKFZP434B033, BRI3, BAIAP2L1, NPTX2, TMEM130, TRRAP, SMURF1, ARPC1A, ARPC1B, PDAP1, BUD31, PTCD1, CPSF4, ATP5J2, LOC285989, ZNF394, ZKSCAN5, DKFZp727G131, ZNF655, ZNF498, CYP3A5, CYP3A7, CYP3A4, CYP3A43, OR2AE1, TRIM4, GJE1, AZGP1, ZKSCAN1, ZNF38, ZNF3, COPS6, MCM7, AP4M1, TAF6, MGC40499, LOC255374, LOC389541, FLJ10925, GAL3ST4, GPC2, STAG3, GATS, MGC2463, MGC57359, PILRB, PILRA, ZCWPW1, BCDIN3, C7orf47, LOC402573, TSC22D4, FLJ37538, HRBL, LRCH4, FBXO24,

PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, PERQ1, POP7, EPO, ZAN, EPHB4, SLC12A9, TRIP6, ARS2, LOC402682, ACHE, MUC17, TRIM56, SERPINE1, AP1S1, VGF, FLJ39237, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYLC2PL, CUTL1, SH2B2, PRKRIP1, C7orf19, ALKBH4, DKFZp434K181, POLR2J, MGC119295, POLR2J3, RASA4, POLR2J2, MGC35361, FBXL13, LRRC17, SVH, NAPE-PLD, FLJ36166, PMPCB, ZRF1, PSMC2, S

V_0105_LC9667_Iafrate et al. (2004), V_0106_LC9682_Iafrate et al. (2004), V_0107_LC9766_Iafrate et al. (2004), V_0724_LC9769_Sharpet al. (2005), V_2104_LC9753_Locke et al. (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006),


V_4553_LC9769_Wong et al. (2007) q21.11-q22.27 106049664 106539645 RP11-687D7 RP11-258L19 4 0.489981 -0.334802347 FLJ36031, PIK3CG, PRKAR2B q22.37 107899856 111168448 RP11-139J13 RP11-80H21 27 3.268592 -0.733853054 IPLA2(GAMMA), THAP5, DNAJB9, LOC154907, IMMP2L, LRRN3, DOCK4 q31.17 112017142 113418271 RP11-184K23 RP11-687A7 11 1.401129 -0.474718025 FLJ13576, FLJ31818, GPR85, PPP1R3A V_0108_LC9826_Iafrate et al. (2004) q31.17 114758205 115461449 RP11-17G24 RP11-135K23 3 0.703244 -0.398576592 TFEC q31.29 3959754 4437068 RP11-442A8 RP11-410L3 4 0.477314 -0.588251078 GLIS3 p24.29 107115230 107720515 RP11-477A7 RP11-747I18 6 0.605285 -0.52219767 SLC44A1, FSD1L, FCMD, TAL2, TMEM38B V_4651_LC11606_Wong et al. (2007) q31.1-q31.2

9 130622064 133038869 RP11-671K14 RP11-723C24 23 2.416805 -0.505953492ENDOG, C9orf114, CCBL1, LRRC8A, PHYHD1, TMEM15, NUP188, SH3GLB2, FAM73B, DOLPP1, CRAT, PPP2R4, IER5L, C9orf106, C9orf50, C9orf32, ASB6, PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, GPR107, FLJ46836, FREQ, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, P518, FIBCD1,

LAMC3, C9orf58, NUP214 q34.11-q34.1311 119634002 119939639 RP11-472E19 RP11-117K21 3 0.305637 -0.466211815 POU2F3, TMEM136, ARHGEF12 q23.311 121790657 122631670 RP11-164B14 RP11-381C13 9 0.841013 -0.595203375 STS-1, CRTAM, C11orf63, HSPA8, ASAM q24.1

11 123150456 124495283 RP11-525H24 RP11-562O13 8 1.344827 -0.55345303OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN, VSIG2, ESAM, C11orf61, ROBO3, ROBO4, HEPACAM, HEPN1,

CCDC15, SLC37A2, LOC219854 q24.1-q24.211 124753000 125318744 RP11-470D7 RP11-428B5 4 0.565744 -0.480511672 PKNOX2, FEZ1, EI24, STT3A, CHEK1, ACRV1, PATE, C11orf38, HYLS1, PUS3, DDX25 V_5037_LC13656_Wong et al. (2007) q24.211 128358470 129465237 RP11-371H7 RP11-117F18 7 1.106767 -0.566544347 RICS, BARX2, TMEM45B, NFRKB, PRDM10, APLP2 q24.3

17 52192 9074649 CTD-2326F1 RP11-111I3 93 9.022457 -0.565377172

RPH3AL, LOC400566, FAM101B, VPS53, FAM57A, GEMIN4, C17orf25, RNMTL1, NXN, TIMM22, ABR, TUSC5, YWHAE, CRK, MYO1C, SKIP, PITPNA, SLC43A2, SCARF1, RILP, PRPF8, MGC14376, WDR81, SERPINF2, SERPINF1, SMYD4, RPA1, RTN4RL1, DPH1, OVCA2, HIC1, SMG6, SRR, TSR1, RUTBC1,MNT, LOC284009, METT10D, PAFAH1B1, KIAA0664, GARNL4, OR1D4, OR1D5, OR1D2, OR1G1, OR1A2, OR1A1, OR3A2, OR3A1, OR3A4, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3, TRPV1, CARKL, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, P2RX1, ATP2A3, ZZEF1,

CYB5D2, ANKFY1, UBE2G1, MGC29671, MYBBP1A, GGT6, FLJ42461, ALOX15, PELP1, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, LOC388323, PSMB6, PLD2, MINK1, CHRNE, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, UNQ5783, RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1, KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1, ALOX12, MGC71993, C17orf49, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2,

PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, TMEM95, TNK1, PLSCR3, C17orf61, NLGN2



17 15609058 18197609 RP11-683B12 RP13-706D19 26 2.588551 -0.963363633ADORA2B, SWS1, TTC19, NCOR1, PIGL, PRR6, UBB, TRPV2, C17orf45, C17orf76, ZNF287, ZNF624, TNFRSF13B, M-RIP, LOC201164, FLCN, COPS3, NT5M, MED9, RASD1, PEMT, RAI1, SREBF1, TOM1L2, LRRC48, ATPAF2, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII, SMCR7, TOP3A, SMCR8,

SHMT1 V_4990_LC17383_Wong et al. (2007) p12-p11.217 18990988 19916725 RP11-330C20 RP11-1301G3 10 0.925737 -0.534957072 EPN2, EPPB9, MAPK7, MFAP4, ZNF179, FLJ10847, ALDH3A2, FLJ31196, ALDH3A1, ULK2, AKAP10 V_4994_LC17394_Wong et al. (2007) p11.218 17653 5600999 RP11-683L23 RP11-286N3 57 5.583346 -0.69164159 USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3 V_5044_LC17825_Wong et al. (2007) p11.32-p11.3118 6907406 7618598 RP11-103K19 RP11-658L2 8 0.711192 -0.518834691 LAMA1, PTPRM p11.31-p11.2318 8845658 9988391 RP11-383K17 RP11-474N24 13 1.142733 -0.581156734 NDUFV2, ANKRD12, TWSG1, RALBP1, PPP4R1, RAB31, TXNDC2, VAPA V_2236_LC17918_Locke et al. (2006), V_5045_LC17914_Wong et al. (2007) p11.22

18 10814734 20082570 RP11-804F2 RP11-799B12 78 9.267836 -0.923035939GNAL, CHMP1B, MPPE1, IMPA2, CIDEA, TUBB6, AFG3L2, C18orf43, SPIRE1, CEP76, TNFSF5IP1, PTPN2, SEH1L, CEP192, C18orf1, C18orf19, RNMT, MC5R, MC2R, ZNF519, MGC26718, ROCK1, KIAA1772, ESCO1, SNRPD1, ABHD3, MIB1, GATA6, CTAGE1, RBBP8, CABLES1, C18orf45, RIOK3, C18orf8,

NPC1, ANKRD29, LAMA3, C18orf17, CABYR, OSBPL1A V_5046_LC17976_Wong et al. (2007) p11.22-q11.2

18 22727892 32123970 RP11-526I8 RP11-394B1 90 9.396078 -0.675042289 CHST9, CDH2, DSC3, DSC2, DSC1, DSG1, DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, MEP1B, FAM59A, KLHL14, C18orf34, NOL4, DTNA, MAPRE2, ZNF397, ZNF271, ZNF24, ZNF396, C18orf37, GALNT1, C18orf21, P15RS, SLC39A6, STATIP1, MOCOSV_0216_LC18106_Iafrate et al. (2004), V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007),

V_5049_LC18082_Wong et al. (2007), V_5050_LC18106_Wong et al. (2007) q11.2-q12.218 34297527 37065761 RP11-62M21 RP11-785O4 20 2.768234 -0.647816111 V_5053_LC18156_Wong et al. (2007) q12.2-q12.318 38325070 40393746 RP11-598K21 RP11-286D19 19 2.068676 -0.629058245 RIT2, SYT4 q12.3

18 58267039 70166570 RP11-279P12 RP11-706A18 111 11.899531 -0.693896902 ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1, FBXO15, C18orf55, CYB5A V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007) q21.33-q22.318 72500616 73676831 RP11-703M10 RP11-732B4 11 1.176215 -0.725330993 ZNF236, MBP, GALR1 q2318 74125368 76098439 RP11-669B13 RP11-565D23 18 1.973071 -0.917070432 SALL3, ATP9B, NFATC1, CTDP1, KCNG2, PQLC1, TXNL4A, C18orf22, KIAA0863, PARD6G V_5064_LC18537_Wong et al. (2007) q23

19 4812608 9580523 RP11-211I3 RP11-86A4 52 4.767915 -2.122740495

M6PRBP1, ARRDC5, C19orf31, UHRF1, JMJD2B, PTPRS, ZNRF4, PLAC2, SAFB2, SAFB, P117, SCDR10, RPL36, PRSS15, TMEM146, MGC24975, DUS3L, NRTN, FUT6, FUT3, FUT5, NDUFA11, VMAC, CAPS, RANBP3, RFX2, ACSBG2, MLLT1, ASAH3, CLPP, ALKBH7, PSPN, GTF2F1, KHSRP, SLC25A41,SLC25A23, CRB3, DENND1C, TUBB4, TNFSF9, CD70, TNFSF14, C3, GPR108, TRIP10, SH2D3A, VAV1, EMR1, EMR4, MBD3L2, ZNF557, INSR, ARHGEF18, PEX11G, FLJ35784, ZNF358, MCOLN1, PNPLA6, KIAA1543, XAB2, PCP2, STXBP2, RETN, MCEMP1, TRAPPC5, FCER2, CLEC4G, CD209, CLEC4M,EVI5L, FLJ22184, LRRC8E, MAP2K7, SNAPC2, CTXN1, TIMM44, ELAVL1, CCL25, FBN3, LASS4, CD320, NDUFA7, RPS28, ANKRD47, ANGPTL4, RAB11B, HNRPM, PRAM1, ZNF414, MYO1F, ADAMTS10, MGC33407, OR2Z1, ZNF558, MBD3L1, MUC16, OR1M1, OR7G2, OR7G1, OR7G3, ZNF317, OR7D2,

OR7D4, OR7E24, ZNF699, ZNF559, ZNF177, ZNF266, ZNF560, ZNF426, ZNF121, ZNF561

V_0220_LC18794_Iafrate et al. (2004), V_0808_LC18794_Sharp et al. (2005), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et al. (2006), V_2240_LC18794_Locke et al. (2006), V_5076_LC18770_Wong et al. (2007), V_5077_LC18773_Wong et al. (2007), V_5078_LC18783_Wong et al. (2007), V_5079_LC18794_Wong et al. (2007), V_5080_LC18794_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007),

V_5083_LC18794_Wong et al. (2007) p13.3-p13.223 23439119 24131983 RP11-93C1 RP11-479I1 7 0.692864 -0.457676484 PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX p22.1123 36355903 38209448 RP11-130D7 RP11-401A21 17 1.853545 -0.836625023 LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC p21.1-p11.423 40210134 41396947 RP11-6E1 CTD-2264F9 12 1.186813 -0.679863547 ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK p11.423 44058402 44830557 RP11-750B11 RP11-711L8 5 0.772155 -0.608586492 EFHC2, FUNDC1, DUSP21, UTX p11.3

23 45495708 47894253 RP11-467A17 RP11-423H3 23 2.398545 -0.611264697 ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41, ARAF, SYN1, TIMP1, CFP, ELK1, UXT, ZNF81, ZNF21, ZNF630, SSX6, LOC389852, SPACA5BV_0822_LC20844_Sharp et al. (2005), V_0823_LC20844_Sharp et al. (2005), V_2276_LC20844_Locke et al. (2006),

V_2277_LC20844_Locke et al. (2006) p11.3-p11.2323 48172092 48734088 RP11-107A19 RP11-297F13 5 0.561996 -0.602310505 SLC38A5, FTSJ1, PORCN, EBP, TBC1D25, RBM3, WDR13, WAS, SUV39H1, LOC392465, GATA1, HDAC6, ERAS, PCSK1N, TIMM17B, PQBP1, SLC35A2, PIM2, OTUD5, KCND1, GRIPAP1 p11.23

23 53341777 58223171 RP11-203E1 RP11-679K15 46 4.881394 -0.642256915 SMC1L1, RIBC1, HADH2, HUWE1, PHF8, CXorf17, WNK3, RP1-112K5.2, FGD1, GNL3L, ITIH5L, MAGED2, TRO, PFKFB1, APEX2, ALAS2, PAGE2B, PAGE2, FAM104B, PAGE5, PAGE3, MAGEH1, USP51, FOXR2, RRAGB, KLF8, UBQLN2, SPIN3, SPIN-2, SPIN2, FLJ31204, ZXDB, ZXDA V_0243_LC20866_Iafrate et al. (2004) p11.22-p11.123 61763848 67807729 RP11-46O9 RP11-567A13 64 6.043881 -0.96788756 LOC139886, ARHGEF9, FAM123B, ASB12, MTMR8, KIAA1166, ZC3H12B, LAS1L, MSN, VSIG4, HEPH, EDA2R, AR, OPHN1, YIPF6, STARD8 V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) q11.1-q13.123 68481358 70997937 RP11-54P15 RP11-402P6 21 2.516579 -0.571043907 TMEM28, EDA, DGAT2L4, OTUD6A, IGBP1, DGAT2L6, DGAT2L3, P2RY4, ARR3, RAB41, PDZD11, KIF4A, GDPD2, DLG3, TEX11, SLC7A3, SNX12, MLLT7, LOC158830, IL2RG, MED12, NLGN3, GJB1, ZMYM3, NONO, ITGB1BP2, TAF1, OGT, ACRC, CXCR3 q13.1

23 72114497 107431974 RP11-74A13 RP11-448E12 306 35.317477 -0.888331229

LOC645974, LOC340529, NAP1L2, CDX4, CHIC1, ZCCHC13, SLC16A2, RNF12, KIAA2022, ABCB7, UPRT, ZDHHC15, MAGEE2, CXorf26, MAGEE1, FGF16, ATRX, DKFZp564K142, COX7B, ATP7A, PGAM4, PGK1, TAF9B, CYSLTR1, ZCCHC5, GPR23, P2RY10, GPR174, ITM2A, TBX22, FAM46D, BRWD3,NSBP1, SH3BGRL, POU3F4, CYLC1, RPS6KA6, CXorf43, FAM121A, SATL1, ZNF6, POF1B, CHM, DACH2, KLHL4, CPXCR1, TGIF2LX, PABPC5, PCDH11X, NAP1L3, RP1-32F7.2, DIAPH2, RPA4, PCDH19, TNMD, TSPAN6, SRPX2, SYTL4, CSTF2, NOX1, XKRX, ARL13A, CXorf34, TMEM35, FSHPRH1, DRP2,

TAF7L, TIMM8A, BTK, RPL36A, GLA, HNRPH2, ARMCX1, ARMCX6, ARMCX3, ARMCX2, NXF5, ZMAT1, TCEAL2, TCEAL6, NGFRAP1L1, NXF2, TMSL8, ARMCX5, GPRASP1, GPRASP2, BHLHB9, LOC286526, BEX1, NXF3, BEXL1, TCEAL8, TCEAL5, BEX2, TCEAL7, WBP5, NGFRAP1, RAB40A, TCEAL4, TCEAL3, TCEAL1, MORF4L2, TMEM31, PLP1, RAB9B, MGC39900, H2BFWT, MCART6, CXorf39, ESX1, IL1RAPL2, TEX13A, NRK, SERPINA7, MUM1L1, CXorf57, RNF128, FLJ20298, CLDN2, MORC4, FLJ11016, FLJ20130, CXorf41, PRPS1, TSC22D3, MID2, TEX13B, VSIG1, PSMD10, ATG4A, COL4A6

V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004),

V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004) q13.1-q22.323 107568807 109255659 RP11-825F10 RP11-12D18 14 1.686852 -0.601672545 COL4A6, COL4A5, IRS4, GUCY2F, NXT2, KCNE1L, ACSL4, RP13-360B22. q22.3

23 111372945 121670287 RP11-505A21 RP11-487H22 96 10.297342 -0.777151251ZCCHC16, LHFPL1, AMOT, HTR2C, IL13RA2, LRCH2, LUZP4, PLS3, AGTR2, SLC6A14, LOC203413, KLHL13, WDR44, DOCK11, IL13RA1, ZCCHC12, LONRF3, PGRMC1, LOC203427, SLC25A5, CXorf56, UBE2A, NKRF, RPL39, UPF3B, RNF113A, NDUFA1, AKAP14, NKAP, OTEX, PEPP-2, ZBTB33, FAM70A,

ATP1B4, LAMP2, CUL4B, MCTS1, C1GALT1C1, CT47.7, CT47.1, CT47.5, CT47.10, CT47.11, CT47.2, CT47.3, CT47.4, CT47.8, CT47.9, CT47.6, GLUD2 q23-q2523 122535814 123093111 RP11-524K17 RP11-100L19 4 0.557297 -0.332219104 THOC2, BIRC4, STAG2 q2523 124324798 126491393 RP11-438A5 RP11-775J17 22 2.166595 -0.640047831 LOC340578, WDR40B V_0253_LC21091_Iafrate et al. (2004) q2523 140623760 140664538 RP11-216N17 RP11-617N20 3 0.040778 -0.467151826 V_0827_LC21138_Sharp et al. (2005) q27.223 140876839 147287703 RP11-325G6 RP11-184I12 64 6.410864 -0.973583639 MAGEC2, SPANX-N4, SPANX-N3, SLITRK4, SPANX-N2, UBE2NL, SPANXN1, SLITRK2, CXorf1, FMR1, FMR1NB V_0255_LC21142_Iafrate et al. (2004) q27.2-q2823 150721208 151561153 RP11-366F6 CTD-2305K5 9 0.839945 -0.730541181 MAGEA4, GABRE, MAGEA5, MAGEA10, GABRA3, GABRQ q28

23 152343217 154906914 CTD-2355F9 RP11-1245L19 31 2.563697 -0.785301885TREX2, UIP1, BGN, ATP2B3, FAM58A, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ,

ATP6AP1, GDI1, FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, CTAG1A, CTAG1B, CTAG2, GAB3, DKC1, MPP1, F8, FUNDC2, MTCP1, CXorf53, VBP1, RAB39B, CLIC2, F8A1, F8A2, F8A3, H2AFB1, H2AFB3, H2AFB2, TMLHE V_0825_LC21225_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005) q2824 482246 2735925 CTD-2584M8 RP11-440F2 11 2.253679 -0.576519066 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY p11.32-p11.3124 2909481 6664486 RP11-846I7 RP11-764M21 35 3.755005 -0.579304786 ZFY, TGIF2LY, PCDH11Y, TSPY2 V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.31-p11.2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 71435913 72578706 RP11-437B7 RP11-763J10 9 1.142793 0.51382831 NEGR1 V_4229_LC0493_Wong et al. (2007) p31.11 74481970 75221849 RP11-235J11 RP11-538B11 10 0.739879 0.567059453 TNNI3K, C1orf173, CRYZ, C1orf171 p31.11 76319171 77010970 RP11-13J14 RP11-232A7 6 0.691799 0.567302998 ST6GALNAC3 p31.12 41662 696156 CTD-2379H9 RP11-354J21 7 0.654494 0.509255352 SH3YL1, ACP1, LOC285016, TMEM18 p25.32 2437802 3266649 RP11-736F19 RP11-513H7 6 0.828847 0.57744313 TSSC1 p25.32 4329498 8616967 RP11-337M10 RP11-196M3 31 4.287469 0.703010708 SOX11, FLJ41046, LOC129607, RSAD2, RNF144 V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007) p25.2-p25.12 11750125 13415347 RP11-5H4 CTD-2127D13 14 1.665222 0.681686873 LPIN1, TRIB2 p25.1-p24.32 20493573 20935267 RP11-24C12 RP11-732O5 4 0.441694 0.776163575 RHOB, HS1BP3, GDF7, C2orf43 p24.1

2 35279818 36928142 RP11-427B21 RP11-316D17 21 1.648324 0.772754338 CRIM1, FEZ2, VITV_0018_LC1749_Iafrate et al. (2004), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et

al. (2007) p22.3-p22.22 39690526 42204365 RP11-288L6 RP11-798D22 18 2.513839 0.716776753 MGC33926, THUMPD2, SLC8A1, LOC91461 p22.1-p212 49814259 51149038 CTD-2306H11 RP11-391D19 9 1.334779 0.637669403 NRXN1 p16.32 58638970 59141341 RP11-269D1 RP11-260K8 7 0.502371 0.708101925 p16.1

2 88771921 89947275 RP11-157D12 RP11-447F8 7 1.175354 0.656514252 RPIAV_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_4295_LC2046_Wong et al. (2007), V_4296_LC2046_Wong et

al. (2007), V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al. (2007), V_0373_LC2046_Bejjani et al. (2005) p11.22 95331519 96031199 RP11-468G5 RP11-625O3 8 0.69968 1.248926876 KCNIP3, FAHD2A, TRIM43 V_4299_LC2057_Wong et al. (2007) q11.1-q11.22 97044699 97779803 RP11-297M15 RP11-762L12 7 0.735104 1.225374296 DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B, ZAP70 q11.22 112882456 113956466 RP11-477F18 RP11-638N20 9 1.07401 1.166246655 TTL, POLR1B, CHCHD5, SLC20A1, FLJ40629, IL1A, IL1B, IL1F7, IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8, CBWD2 q13-q14.14 159308141 159905147 RP11-464N24 RP11-796K13 5 0.597006 1.230403464 C4orf18, TMEM144, RXFP1, LOC201725, ETFDH, PPID q32.16 30666043 31023601 RP11-65L23 RP11-440J6 6 0.357558 0.488826582 ABCF1, PPP1R10, MRPS18B, C6orf134, C6orf136, DHX16, KIAA1949, NRM, MDC1, TUBB, FLOT1, IER3, DDR1, GTF2H4, VARSL, SFTPG p21.33

17 32333405 35522380 RP11-722B4 RP11-278E15 32 3.188975 1.042607643LHX1, AATF, ACACA, C17orf78, TADA2L, DUSP14, AP1GBP1, DDX52, TCF2, TBC1D3B, TBC1D3, MRPL45, GPR179, SOCS7, SNIP, MLLT6, PCGF2, PSMB3, PIP5K2B, CCDC49, LOC388381, RPL23, LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, FBXL20, PPARBP, CRKRS, NEUROD2, PPP1R1B,

STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, ZNFN1A3, ZPBP2, GSDML, ORMDL3, GSDM1, PSMD3, CSF3, THRAP4, THRA, NR1D1V_2224_LC17457_Locke et al. (2006), V_5001_LC17457_Wong et al. (2007), V_5002_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al. (2007), V_5006_LC17473_Wong et al. (2007) q12-q21.1

17 35833079 36762766 RP11-51J19 RP13-649M11 7 0.929687 0.940358795IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2, KRTAP4-10,

KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A V_0205_LC17492_Iafrate et al. (2004) q21.217 38748012 39272285 CTD-2297L14 RP11-436J4 7 0.524273 0.560775144 ARL4D, DHX8, ETV4, MEOX1, SOST, DUSP3, MPP3 V_5007_LC17508_Wong et al. (2007) q21.31

17 40328069 41559177 RP11-113A24 RP11-782E1 15 1.231108 0.645980476 EFTUD2, LOC388389, GFAP, LOC146909, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, FMNL1, C17orf46, MAP3K14, ARHGAP27, LOC201175, PLEKHM1, C17orf69, CRHR1, IMP5, MAPT, STH, KIAA1267V_0801_LC17522_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006),



Losses

Gains

RMG1

17 41698238 55157587 RP11-193J3 RP11-118K23 153 13.459349 2.00166997

LRRC37A, LOC474170, ARL17, NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1, SNX11, SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13, TTLL6, CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB, NGFR, NXPH3, SPOP, SLC35B1, LOC81558, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1,

TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9, NME1, NME1-NME2, NME2, MBTD1, UTP18, CA10, KIF2B, TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC, PTRH2, TMEM49

V_0207_LC17522_Iafrate et al. (2004), V_0208_LC17538_Iafrate et al. (2004), V_0209_LC17565_Iafrate et al. (2004), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006), V_2229_LC17530_Locke et al. (2006), V_4410_LC17595_Wong et al. (2007), V_5012_LC17522_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007), V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007),

V_5018_LC17559_Wong et al. (2007), V_5019_LC17572_Wong et al. (2007) q21.31-q23.117 55328115 55709933 RP11-622H1 RP11-767P9 3 0.381818 0.98027994 RPS6KB1, LOC51136, ABC1, CA4, USP32 V_0805_LC17601_Sharp et al. (2005) q23.1-q23.217 56267769 58892053 RP11-411N18 RP11-441O7 31 2.624284 0.99951659 BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2, MRC2, RNF190, CYB561 V_2230_LC17608_Locke et al. (2006), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007) q23.2-q23.3

17 60135129 60485432 RP11-443O21 RP11-583F2 8 0.350303 0.698519117 FLJ34306, GNA13V_2231_LC17631_Locke et al. (2006), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007),

V_5024_LC17631_Wong et al. (2007) q24.119 33018635 34866442 RP11-109F17 RP11-272C23 23 1.847807 2.025472934 UQCRFS1, POP4, PLEKHF1 q1219 35155612 37419259 RP11-652C23 RP11-3K1 26 2.263647 1.743175889 C19orf2, ZNF536, TSHZ3 q12-q13.1120 48142652 48717664 RP11-73P14 RP13-625L11 4 0.575012 0.893502838 Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175 V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q13.13

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands17 43565909 44186865 RP11-456D7 RP11-600O7 8 0.620956 1.12781257 SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, PRAC, HOXB13 q21.32

17 44816026 46507874 RP11-472H5 RP11-140N23 20 1.691848 1.051393068 PHB, NGFR, NXPH3, SPOP, SLC35B1, LOC81558, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3, ANKRD40, CROP, WFIKKN2, TOB1, SPAG9 V_5016_LC17543_Wong et al. (2007), V_5017_LC17552_Wong et al. (2007), V_5018_LC17559_Wong et al. (2007) q21.3317 46784416 48665701 RP11-668K17 RP11-771D9 18 1.881285 1.386501016 CA10 V_0209_LC17565_Iafrate et al. (2004) q21.33-q2217 49838155 53971269 RP11-618L5 RP11-155E20 45 4.133114 2.00166997 TOM1L1, COX11, STXBP4, HLF, MMD, TMEM100, PCTP, ANKFN1, NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4 V_4410_LC17595_Wong et al. (2007) q22


SMOV-2

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 12343280 12941777 RP11-333P22 RP11-583G23 4 0.598497 0.509922253 VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10 V_4403_LC0152_Wong et al. (2007) p36.22-p36.21

1 16638358 16869758 RP11-777P8 RP11-408H16 6 0.2314 0.739377316 NECAP2, NBPF1V_0679_LC0177_Sharp et al. (2005), V_2044_LC0177_Locke et al. (2006), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007),

V_4209_LC0177_Wong et al. (2007) p36.131 32883624 33354409 RP11-114B7 RP11-133F9 3 0.470785 0.526835079 ZBTB8OS, RBBP4, SYNC1, KIAA1522, YARS, S100PBP, FNDC5, HPCA, TMEM54, IBRDC3, AK2, ADC p35.11 99768413 101185027 RP11-331P23 RP11-24D5 19 1.416614 0.579309039 PALMD, FRRS1, AGL, SLC35A3, HIAT1, SASS6, CCDC76, LRRC39, DBT, RTCD1, CDC14A, GPR88, VCAM1, EXTL2, SLC30A7 V_4237_LC0630_Wong et al. (2007) p21.2

1 102055200 107022740 RP11-466I18 RP11-65C20 49 4.96754 0.792800058 OLFM3, COL11A1, RNPC3, AMY2B, AMY2A, AMY1A, AMY1C, AMY1BV_0012_LC0649_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006),

V_4238_LC0649_Wong et al. (2007), V_4239_LC0656_Wong et al. (2007), V_0365_LC0642_Vissers et al. p21.1-p13.31 108815985 109463759 RP11-412J15 RP11-594I24 6 0.647774 0.411041584 FAM102B, C1orf59, PRPF38B, FNDC7, STXBP3, C1orf62, GPSM2, CLCC1, WDR47, TAF13, C1orf119, KIAA1324 V_4241_LC0680_Wong et al. (2007) p13.31 113020624 113892288 RP11-35H13 RP11-72G22 8 0.871664 0.599212091 MOV10, RHOC, PPM1J, FAM19A3, SLC16A1, LRIG2, MAGI3 V_0013_LC0711_Iafrate et al. (2004) p13.2

1 118822139 185716942 RP11-302K5 RP11-431K17 436 66.894803 1.073585296

TBX15, WARS2, HAO2, HSD3B2, HSD3B1, ZNF697, PHGDH, HMGCS2, REG4, NBPF7, ADAM30, NOTCH2, LOC440607, NBPF20, PDE4DIP, SEC22B, NOTCH2NL, HFE2, TXNIP, POLR3GL, ANKRD34, LIX1L, RBM8A, PEX11B, ITGA10, ANKRD35, PIAS3, NUDT17, POLR3C, ZNF364, CD160, PDZK1, FAM108A2, PRKAB2, FMO5, CHD1L, BCL9, ACP6, GJA5, GJA8, GPR89A, NBPF11, NBPF14, NBPF10, NBPF15, LOC388692, LOC440686, PPIAL4, FCGR1A, HIST2H2BF, H2A/R, HIST2H2AA, H3/o, HIST2H3C, H4/o, HIST2H4, HIST2H2BE, HIST2H2AC, HIST2H2AB, BOLA1, SV2A,

SF3B4, MTMR11, OTUD7B, VPS45A, PLEKHO1, ANP32E, CA14, APH1A, C1orf54, C1orf51, MRPS21, PRPF3, KIAA0460, TARSL1, ECM1, ADAMTSL4, MCL1, ENSA, GOLPH3L, HORMAD1, CTSS, CTSK, ARNT, SETDB1, LASS2, ANXA9, FAM63A, PRUNE, BNIPL, C1orf56, CDC42SE1, MLLT11, MGC29891, SEMA6C, TNFAIP8L2, LYSMD1, SCNM1, TMOD4, VPS72, PIP5K1A, PSMD4, ZNF687, PIK4CB, RFX5, SELENBP1, PSMB4, POGZ, CGN, TUFT1, SNX27, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN,

LCE5A, C1orf42, LCE3E, LCE3D, LCE3C, LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D, SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4, S100A3, S100A2, S100A16, S100A14, S100A13, S

V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_2052_LC0752_Locke et al. (2006), V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007), V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007), V_4251_LC0752_Wong et al. (2007), V_4252_LC0752_Wong et al. (2007), V_4253_LC0752_Wong et al. (2007), V_4254_LC0752_Wong et al. (2007), V_4255_LC0752_Wong et al. (2007), V_4256_LC0752_Wong et al. (2007), V_4257_LC0831_Wong et al. (2007), V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007),

V_4264_LC0975_Wong et al. (2007), V_4265_LC0992_Wong et al. (2007) p12-q31.1

1 196442632 227514958 RP11-135A15 RP11-75K8 298 31.072326 1.307334919

pPPP1R12B, SYT2, JARID1B, RABIF, KLHL12, ADIPOR1, CYB5R1, C1orf37, C1orf37-DUP, PPFIA4, MYOG, ADORA1, MYBPH, CHI3L1, CHIT1, BTG2, FMOD, PRELP, OPTC, ATP2B4, LAX1, ZC3H11A, SNRPE, C1orf157, SOX13, ETNK2, REN, KISS1, GOLT1A, PLEKHA6, PPP1R15B, PIK3C2B,

MDM4, LRRN5, NFASC, CNTN2, TMEM81, RBBP5, RIPK5, TMCC2, NUAK2, KLHDC8A, LEMD1, PCTK3, MFSD4, ELK4, SLC45A3, NUCKS1, RAB7L1, SLC41A1, FLJ32569, SLC26A9, AVPR1B, C1orf186, CTSE, SRGAP2, IKBKE, RASSF5, LGTN, DYRK3, MAPKAPK2, IL10, IL19, IL20, IL24, FAIM3, PIGR, FCAMR, C1orf116, YOD1, PFKFB2, C4BPB, C4BPA, CD55, CR2, CR1, CD46, CD34, PLXNA2, CAMK1G, LAMB3, G0S2, HSD11B1, TRAF3IP3, C1orf74, IRF6, C1orf107, SYT14, SERTAD4, HHAT, KCNH1, RCOR3, TRAF5, C1orf97, C1orf36, SLC30A1, NEK2, LPGAT1, INTS7, DTL,

PPP2R5A, C1orf75, NENF, ATF3, FAM71A, SNFT, C1orf48, TATDN3, LOC149643, FLVCR, FLJ12505, ANGEL2, RPS6KC1, PROX1, SMYD2, PTPN14, CENPF, KCNK2, KCTD3, USH2A, ESRRG, GPATCH2, LOC128153, RRP15, TGFB2, LYPLAL1, SLC30A10, EPRS, BPNT1, IARS2, RAB3GAP2, MARK1, C1orf115, MOSC2, MOSC1, HLX1, C1orf140, DUSP10, KIAA1822L, TAF1A, MIA3, C1orf80, C1orf58, FLJ43505, DISP1, TLR5, SUSD4, C1orf

V_2091_LC1120_Locke et al. (2006), V_4267_LC1097_Wong et al. (2007), V_4268_LC1117_Wong et al. (2007), V_4269_LC1125_Wong et al. (2007), V_4270_LC1176_Wong et al. (2007) q31.3-q42.13

1 227983723 246944046 RP11-63J5 RP11-378I20 195 18.960323 1.220682528

GALNT2, PGBD5, COG2, AGT, CAPN9, C1orf198, TTC13, ARV1, FAM89A, TRIM67, C1orf131, GNPAT, EXOC8, C1orf124, EGLN1, TSNAX, DISC1, SIPA1L2, C1orf57, PCNXL2, KIAA1804, KCNK1, SLC35F3, C1orf31, TARBP1, IRF2BP2, TOMM20, RBM34, ARID4B, GGPS1, TBCE, B3GALNT2, GNG4, LYST, NID1, GPR137B, ERO1LB, EDARADD, LGALS8, HEATR1, ACTN2, MTR, LOC645745, RYR2, ZP4, CHRM3, FMN2, GREM2, RGS7, FH, KMO, OPN3, CHML, WDR64, EXO1, MAP1LC3C, PLD5, CEP170, SDCCAG8, AKT3, ZNF238, LOC440742, C1orf100, ADSS, C1orf101, C1orf121, FAM36A, HNRPU, EFCAB2, KIF26B, SMYD3, TFB2M, C1orf71, SCCPDH, AHCTF1, ZNF695, ZNF670, ZNF669, FLJ45717, ZNF124, VN1R5, ZNF496, NLRP3, CIAS1, OR2B11, OR2W5, OR2C3, C1orf150, OR2G2, OR2G3, OR13G1, OR6F1, OR5AY1, OR1C1, OR5AT1, OR11L1, TRIM58, OR2W3,

OR2T8, OR2L13, OR2L8, OR2AK2, OR2L2, OR2L3, OR2M5, OR2M2, OR2M3, OR2M4, OR2T33, OR2T12, OR2M7, OR5BF1, OR2T4, OR2T6, OR2T1, OR2T2, OR2T3, OR2T5, OR2G6, OR2T29, OR2T34, OR2T10, OR2T11, OR2T35, OR2T27, OR5BU1V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_2056_LC1401_Locke et al. (2006), V_4271_LC1296_Wong et al. (2007),

V_4272_LC1302_Wong et al. (2007) q42.13-q442 94689898 94782647 RP11-134N21 RP11-656P8 4 0.092749 0.440949465 q11.12 100750928 101391547 RP11-18I19 RP11-67E20 5 0.640619 0.546129127 NPAS2, RPL31, C2orf29, RNF149, CREG2 q11.22 130297739 131068898 RP11-70H9 RP11-583B15 8 0.771159 0.731430655 RAB6C, CCDC74B, NSMASE3, FLJ14346, LOC112714, MGC12981, IMP4, PTPN18, CFC1, LOC653275 V_0024_LC2234_Iafrate et al. (2004) q21.12 131710112 132315466 RP11-487E11 RP11-784L11 7 0.605354 0.65200275 PLEKHB2, POTE2, LOC150786, H2-ALPHA, FAM128A, CCDC74A, FKSG30, C2orf27, MGC50273 V_0025_LC2234_Iafrate et al. (2004), V_4307_LC2234_Wong et al. (2007) q21.1-q21.22 190828639 191463891 RP11-627I23 RP11-109O15 6 0.635252 0.559856638 HIBCH, INPP1, FLJ20160, NAB1, GLS q32.2

2 236695933 241743170 RP11-438K1 RP11-381P3 48 5.047237 0.348925973CENTG2, GBX2, ASB18, IQCA, CMKOR1, COPS8, COL6A3, MLPH, PRLH, RAB17, LRRFIP1, FLJ40411, RAMP1, UBE2F, SCLY, LOC339768, KLHL30, ILKAP, HES6, PER2, TRAF3IP1, ASB1, HDAC4, FLJ45964, NDUFA10, OR6B2, LOC643905, OR6B3, MYEOV2, OTOS, GPC1, ANKMY1,

LOC285193, RNPEPL1, CAPN10, GPR35, AQP12A, KIF1A, AGXT, FLJ22671, SNED1, MTERFD2, PASK, PPP1R7 V_0031_LC2814_Iafrate et al. (2004), V_4330_LC2814_Wong et al. (2007) q37.2-q37.33 126819176 127241202 RP11-766E7 RP11-666A20 5 0.422026 0.275945667 LOC200810, ROPN1B, SLC41A3 V_4352_LC3588_Wong et al. (2007) q21.2

3 173424245 196767987 RP11-423E7 RP11-165B7 215 23.343742 0.870994976

FNDC3B, GHSR, TNFSF10, AADACL1, ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1, KCNMB2, WIG1, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5, USP13, PEX5L, TTC14, FXR1, DNAJC19, SOX2, ATP11B, DCUN1D1, MCCC1, LAMP3, MCF2L2, B3GNT5, KLHL6, LOC389286, KLHL24, YEATS2, MAP6D1, PARL, ABCC5, HTR3D, HTR3C, HTR3E, EIF2B5, DVL3, AP2M1, ABCF3, ALG3, MGC2408, CAMK2N2, ECE2, PSMD2, EIF4G1, C3orf40, CLCN2, POLR2H, THPO, CHRD, EPHB3, MAGEF1, VPS8, LOC285382, EHHADH, MAP3K13, TMEM41A, LIPH,

SENP2, IGF2BP2, FLJ32900, SFRS10, ETV5, DGKG, CRYGS, TBCCD1, DNAJB11, AHSG, FETUB, HRG, KNG1, EIF4A2, RFC4, ADIPOQ, ST6GAL1, RPL39L, RTP1, MASP1, RTP4, SST, RTP2, BCL6, LPP, FAM79B, TP73L, LEPREL1, CLDN1, CLDN16, UNQ846, IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12, C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1, HES1, CPN2, LRRC15, GP5, TMEM44, LSG1, FAM43A, C3orf21, CENTB2, PPP1R2

V_0040_LC3895_Iafrate et al. (2004), V_2062_LC4004_Locke et al. (2006), V_2063_LC4020_Locke et al. (2006), V_4363_LC3872_Wong et al. (2007), V_4364_LC3931_Wong et al. (2007), V_4365_LC3931_Wong et al. (2007) q26.31-q29

3 197535577 199446704 RP11-267B1 RP11-652A1 20 1.911127 0.49524759 TM4SF19, RNF168, C3orf43, WDR53, LRRC33, C3orf34, PIGX, PAK2, SENP5, NCBP2, PIGZ, MFI2, DLG1, BDH1, FYTTD1, LRCH3, IQCG, RPL35A, LMLNV_0043_LC4057_Iafrate et al. (2004), V_0044_LC4057_Iafrate et al. (2004), V_4368_LC4048_Wong et al. (2007), V_4369_LC4050_Wong et al. (2007),

V_4370_LC4057_Wong et al. (2007) q295 33768535 34066975 RP11-666A5 CTD-2340N2 6 0.29844 0.886406783 ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3 p13.35 34401704 35319908 RP11-3M7 RP11-97E21 7 0.918204 0.804921426 RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR p13.25 149300567 149676633 RP11-21I20 RP11-725L10 3 0.376066 0.55766811 PDE6A, SLC26A2, TIGD6, CSF1R, PDGFRB, CDX1, SLC6A7, CAMK2A, ARSI q33.1

5 174802102 179175181 RP11-601F2 RP11-385L13 54 4.373079 0.46937281DRD1, SFXN1, HRH2, CPLX2, LOC202134, C5orf25, KIAA1191, ARL10, HSPC111, HIGD2A, CLTB, UBXD8, RNF44, PCLKC, KIAA1893, SNCB, TSPAN17, UNC5A, HK3, RAP80, ZNF346, FGFR4, NSD1, RAB24, PX19, MXD3, LMAN2, RGS14, SLC34A1, PFN3, F12, GRK6, PRR7, DBN1, PDLIM7,

DOK3, DDX41, TMED9, B4GALT7, NY-REN-7, THOC3, PROP1, LOC653316, LOC653314, N4BP3, FLJ22318, NOLA2, HNRPAB, MGC15875, COL23A1, CLK4, ZNF354A, ZNF354B, ZFP2, ZNF454, GRM6, ZNF354C, ADAMTS2, RUFY1, HNRPH1, LOC441120, CANX, MAML1, LTC4S, MGAT4B V_0068_LC7886_Iafrate et al. (2004), V_2092_LC7866_Locke et al. (2006), V_4481_LC7886_Wong et al. (2007) q35.2-q35.35 180061528 180730036 RP11-798E20 RP11-324K20 8 0.668508 0.451482219 OR2Y1, MGAT1, BTNL8, BTNL3, BTNL9, OR2V2, TRIM7, TRIM41, GNB2L1, TRIM52, OR4F16, OR4F29, OR4F3 V_2093_LC7886_Locke et al. (2006), V_2094_LC7886_Locke et al. (2006), V_0372_LC7886_Bejjani et al. (2005) q35.3

7 40844 7418638 CTD-2245C5 RP11-125I1 54 7.377794 1.146380312

FAM20C, PDGFA, PRKAR1B, FLJ20397, UNC84A, FLJ44124, C7orf20, CENTA1, COX19, CYP2W1, MGC11257, GPR146, GPR30, ZFAND2A, LOC641901, UNCX4.1, MICALL2, MICAL-L2, INTS1, MAFK, MGC9712, MGC10911, LOC401296, MAD1L1, FTSJ2, NUDT1, SNX8, EIF3S9, CHST12, LFNG, C7orf27, IQCE, TTYH3, AMZ1, GNA12, CARD11, SDK1, FOXK1, KIAA0415, FLJ10324, PAPOLB, MMD2, RBAK, LOC389458, WIPI2, SLC29A4, KIAA1856, FBXL18, ACTB, FSCN1, TRIAD3, C7orf28A, PMS2, JTV1, EIF2AK1, USP42, PSCD3, MGC12966, RAC1, LOC221955, KDELR2,

ZDHHC4, C7orf26, ZNF12, LOC222967, C7orf28B, C1GALT1, COL28A1V_0093_LC9158_Iafrate et al. (2004), V_2099_LC9264_Locke et al. (2006), V_4519_LC9158_Wong et al. (2007), V_4520_LC9158_Wong et al. (2007), V_4521_LC9158_Wong et al. (2007), V_4522_LC9158_Wong et al. (2007), V_4523_LC9158_Wong et al. (2007), V_4524_LC9249_Wong et al. (2007) p22.3-p21.3

7 24489614 29041138 RP11-343P21 RP11-630G13 43 4.551524 2.536435835 MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9, NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL V_4529_LC9384_Wong et al. (2007) p15.3-p15.17 30545517 31297263 RP11-292F7 RP11-85N10 6 0.751746 1.911336424 GARS, CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1 p15.1

7 43238613 45950759 RP11-747K1 RP11-114M14 31 2.712146 0.464042312 HECW1, STK17A, FLJ10803, BLVRA, MRPS24, URG4, UBE2D4, WBSCR19, DBNL, PGAM2, POLM, AEBP1, POLD2, MYL7, GCK, YKT6, CAMK2B, NUDCD3, NPC1L1, DDX56, TMED4, OGDH, DKFZp761I212, PPIA, H2AFV, PURB, MYO1G, CCM2, TBRG4, RAMP3, ADCY1, IGFBP1, IGFBP3 V_4531_LC9464_Wong et al. (2007), V_4532_LC9464_Wong et al. (2007), V_4533_LC9471_Wong et al. (2007) p14.1-p137 50158388 51681661 RP11-663L2 RP11-399H20 15 1.523273 0.509740229 ZNFN1A1, FIGNL1, DDC, GRB10, COBL p12.2-p12.1

7 55228387 78955899 RP11-708P5 RP11-638G10 247 23.727512 0.600690408

EGFR, LANCL2, ECOP, FKBP9L, FLJ44060, ZNF713, MRPS17, GBAS, PSPH, CCT6A, SUMF2, PHKG1, CHCHD2, LOC401357, ZNF680, ZNF588, ZNF138, ZNF273, ZNF117, ZNF92, VKORC1L1, GUSB, ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2,

GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26, CCL24, RHBDD2, POR, TMPIT, STYXL1, MDH2, FLJ37078, HSPB1, YWHAG, SRCRB4D, ZP3, DTX2, UPK3B, POMZP3, KIAA1505, FGL2, LOC54103, PTPN12, RSBN1L, TMEM60, PHTF2, MAGI2, MGC34774

V_0104_LC9545_Iafrate et al. (2004), V_0720_LC9535_Sharp et al. (2005), V_0721_LC9545_Sharp et al. (2005), V_0722_LC9554_Sharp et al. (2005), V_0723_LC9631_Sharp et al. (2005), V_2100_LC9545_Locke et al. (2006), V_2101_LC9554_Locke et al. (2006), V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4538_LC9545_Wong et al. (2007), V_4539_LC9545_Wong et al. (2007), V_4540_LC9545_Wong et al. (2007), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007),

V_4545_LC9609_Wong et al. (2007), V_5063_LC9543_Wong et al. (2007), V_0375_LC9545_Bejjani et al. (2005) p11.2-q21.11

7 101687460 102101890 RP11-163E9 RP11-676J21 6 0.41443 0.555057108 SH2B2, PRKRIP1, C7orf19, ALKBH4, DKFZp434K181, POLR2J, MGC119295, POLR2J3, RASA4, POLR2J2 V_0724_LC9769_Sharp et al. (2005), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_4553_LC9769_Wong et al. (2007) q22.18 457458 1758800 RP11-800L13 RP11-805C16 10 1.301342 0.260028897 C8orf42, LOC389607, ERICH1, DLGAP2, CLN8, C8orf61 V_2112_LC10225_Locke et al. (2006) p23.3

8 6741630 7339057 RP11-485I5 RP11-739E3 6 0.597427 0.570408124 DEFA6, DEFA4, DEFA1, LOC653600, DEFA3, DEFA5, PJCG6, DEFB104A, DEFB104B

V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_4577_LC10380_Wong et al. (2007),

V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007) p23.18 8515357 9287954 RP11-19J4 RP11-776B5 5 0.772597 0.39628737 CLDN23, MFHAS1, THEX1, PPP1R3B p23.18 10358787 11014745 RP11-423K3 RP11-437P14 5 0.655958 0.304898118 UNQ9391, RP1L1, C8orf74, SOX7, PINX1, XKR6 p23.1

8 11741771 12731028 RP11-367E11 RP11-683E21 8 0.989257 0.297423073 CTSB, DEFB137, DEFB136, DEFB134, DUB3, FAM86B1, DEFB130, LOC440053, LONRF1V_0740_LC10408_Sharp et al. (2005), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_4582_LC10408_Wong et al. (2007),

V_4583_LC10408_Wong et al. (2007), V_4584_LC10408_Wong et al. (2007) p23.1-p228 18615191 19254999 RP11-724O9 CTD-2037K19 7 0.639808 0.47530996 PSD3, SH2D4A p22-p21.3

8 20519971 23535579 RP11-108E14 RP11-711D3 31 3.015608 0.520401936GFRA2, DOK2, XPO7, NPM2, FGF17, EPB49, RAI16, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2, SLC39A14, PPP3CC, SORBS3, PDLIM2, C8orf58, KIAA1967, BIN3, EGR3, PEBP4, RHOBTB2, TNFRSF10B, TNFRSF10C, TNFRSF10D, TNFRSF10A, CHMP7, LOXL2,

ENTPD4, SLC25A37 V_2124_LC10461_Locke et al. (2006), V_2125_LC10461_Locke et al. (2006), V_4586_LC10461_Wong et al. (2007) p21.3-p21.28 54763817 55571528 RP11-289K4 RP11-749I21 7 0.807711 0.398396845 ATP6V1H, RGS20, TCEA1, LYPLA1, MRPL15, SOX17 q11.238 81091081 81779919 RP11-795H2 RP11-36K24 5 0.688838 0.411438575 MRPS28, TPD52, ZBTB10, ZNF704 q21.13

8 86851015 87082985 RP11-694L21 RP11-639P4 4 0.23197 0.444942766V_0121_LC10727_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007),

V_4605_LC10727_Wong et al. (2007) q21.29 29038 306997 RP11-143M1 RP11-770G15 4 0.277959 0.535688672 FOXD4, CBWD1, C9orf66, DOCK8 V_0125_LC11024_Iafrate et al. (2004) p24.39 32757197 33775694 RP11-100N10 RP11-105C6 7 1.018497 0.415972954 LOC401498, APTX, DNAJA1, SMU1, B4GALT1, SPINK4, BAG1, CHMP5, NFX1, AQP7, AQP3, NOL6 V_0741_LC11289_Sharp et al. (2005) p21.1-p13.3

9 38765151 70234204 RP11-73E13 RP11-211E19 51 31.469053 0.685599593 CNTNAP3, LOC642265, LOC727830, ZNF658, ZNF658B, ANKRD20A2, LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2, FOXD4L3, PGM5

_ _ _ p ( ), _ _ _ p ( ), _ _ _ p ( ), _ _ _ p ( ),V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. (2006), V_2131_LC11330_Locke et al. (2006), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2140_LC11330_Locke et al. (2006), V_2141_LC11344_Locke et al. (2006), V_2142_LC11330_Locke et al. (2006),

V_2143_LC11330_Locke et al. (2006), V_2144_LC11344_Locke et al. (2006), V_2145 p13.1-q139 73199243 74624800 RP11-634M8 RP11-61C22 15 1.425557 0.56658912 TMEM2, C9orf77, C9orf85, GDA, ZA20D2, TMC1 q21.13

9 90481773 96083231 RP11-204A14 RP11-673F24 49 5.601458 0.35160705C9orf47, EDG3, SHC3, CKS2, SECISBP2, LOC349236, SEMA4D, GADD45G, DIRAS2, SYK, AUH, NFIL3, ROR2, SPTLC1, IARS, NOL8, RP11-19J3.3, OGN, OMD, ASPN, ECM2, IPPK, BICD2, ANKRD19, ZNF484, FGD3, SUSD3, C9orf89, NINJ1, WNK2, C9orf10OS, C9orf10, PHF2, BARX1,

PTPDC1, ZNF169 V_0760_LC11496_Sharp et al. (2005), V_0761_LC11498_Sharp et al. (2005), V_4645_LC11529_Wong et al. (2007) q22.1-q22.32

9 97175314 101325512 RP11-435O5 RP11-627N7 39 4.150198 0.346124835PTCH1, LOC375748, C9orf102, HSD17B3, SLC35D2, ZNF367, HABP4, CDC14B, C9orf21, ZNF510, FLJ16636, FAM22G, CTSL2, ZNF322B, KIAA1529, TDRD7, TMOD1, C9orf97, NCBP1, XPA, FOXE1, C9orf156, HEMGN, ANP32B, NANS, TRIM14, CORO2A, TBC1D2, GABBR2, ANKS6, GALNT12,

COL15A1, TGFBR1, ALG2, SEC61B V_4646_LC11551_Wong et al. (2007), V_4647_LC11560_Wong et al. (2007), V_4648_LC11560_Wong et al. (2007) q22.32-q22.339 121721784 122240816 RP13-609O8 RP11-713E4 11 0.519032 0.373392061 CDK5RAP2 q33.1-q33.2

9 124820910 135039251 RP11-102I1 RP11-326L24 104 10.218341 0.499314522

RABGAP1, GPR21, STRBP, CRB2, DENND1A, LHX2, NEK6, PSMB7, NR5A1, NR6A1, OLFML2A, LOC401551, RPL35, ARPC5L, GOLGA1, C9orf126, PPP6C, RABEPK, HSPA5, GAPVD1, MAPKAP1, PBX3, C9orf28, LMX1B, ZNF297B, RALGPS1, ANGPTL2, GARNL3, SLC2A8, ZNF79, RPL12, LRSAM1, C9orf88, STXBP1, C9orf117, PTRH1, TTC16, TOR2A, SH2D3C, CDK9, FPGS, ENG, AK1, ST6GALNAC6, ST6GALNAC4, PIP5KL1, DPM2, FAM102A, C9orf90, SLC25A25, PTGES2, LCN2, C9orf16, CIZ1, DNM1, GOLGA2, TRUB2, COQ4, SLC27A4, C9orf74, CEECAM1, ODF2, GLE1L, SPTAN1, WDR34, SET, PKN3, ZDHHC12, ZYG11BL, TBC1D13, ENDOG, C9orf114, CCBL1, LRRC8A, PHYHD1, TMEM15, NUP188, SH3GLB2, FAM73B, DOLPP1, CRAT, PPP2R4, IER5L, C9orf106, C9orf50, C9orf32, ASB6, PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, GPR107,

FLJ46836, FREQ, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, P518, FIBCD1, LAMC3, C9orf58, NUP214, FAM78A, PPAPDC3, POMT1, UCK1, RAPGEF1, CRSP8, NTNG2, SETX, TTF1, FLJ46082, BARHL1, DDX31, GTF3C4, C9orf98, C9orf9, TSC1, GFI1B, GTF3C5, CEL, RALGDS, GBGT1 V_4654_LC11759_Wong et al. (2007), V_4655_LC11759_Wong et al. (2007), V_4656_LC11759_Wong et al. (2007) q33.2-q34.2

9 137350937 140237228 RP11-159B3 RP11-668B20 20 2.886291 0.387369628

KIAA0649, C9orf116, MRPS2, LCN1, OBP2A, PAEP, GLT6D1, LCN9, SOHLH1, KCNT1, CAMSAP1, UBADC1, BTBD14A, LHX3, QSOX2, GPSM1, LOC728489, CARD9, SNAPC4, SDCCAG3, PMPCA, INPP5E, KIAA0310, FLJ36779, NOTCH1, EGFL7, AGPAT2, FAM69B, LCN10, LCN6, LCN8, UNQ2541, MGC14141, KIAA1984, C9orf86, LOC389813, PHPT1, MAMDC4, EDF1, TRAF2, FBXW5, C8G, LCN12, PTGDS, FLJ45224, C9orf142, CLIC3, ABCA2, FLJ36268, FUT7, NPDC1, ENTPD2, C9orf140, UAP1L1, MAN1B1, DPP7, GRIN1, LOC389816, ANAPC2, SSNA1, C9orf75, MGC14327,

NDOR1, LOC727800, MGC59937, SLC34A3, TUBB2C, LOC401565, LOC441476, COBRA1, FLJ20245, MGC61598, FLJ20433, NOXA1, ENTPD8, NELF, C9orf111, MRPL41, WDR85, ZMYND19, ARRDC1, C9orf37, EHMT1, FLJ40292, CACNA1BV_0133_LC11864_Iafrate et al. (2004), V_0134_LC11864_Iafrate et al. (2004), V_4661_LC11864_Wong et al. (2007), V_4662_LC11864_Wong et al. (2007),

V_4663_LC11864_Wong et al. (2007) q34.311 46021150 46538601 RP11-702F3 RP11-425L10 5 0.517451 0.470189343 PHF21A, CREB3L1, DGKZ, MDK, CHRM4, FLJ20294 p11.211 48959449 49499695 RP11-143C6 RP11-593F12 5 0.540246 0.492675684 FOLH1 p11.12

11 60835781 63411815 RP11-620G9 RP11-466C23 29 2.576034 0.416235328

DDB1, DAK, CYBASC3, TMEM138, MGC13379, FLJ12529, FLJ20487, C11orf66, SYT7, C11orf11, C11orf9, C11orf10, FEN1, FADS1, FADS2, FADS3, RAB3IL1, VMD2, FTH1, LOC399900, INCENP, SCGB1D1, SCGB2A1, SCGB1D2, SCGB2A2, SCGB1D4, ASRGL1, SCGB1A1, AHNAK, EEF1G, RBM21, MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, LOC751071, LOC790955, LOC51035, LOC221091, BSCL2, GNG3, HNRPUL2, TTC9C, ZBTB3, POLR2G, TAF6L, LOC374395, MGC3196, NXF1, STX5, WDR74, SLC3A2, CHRM1, SLC22A6, SLC22A8, MGC34821, LOC387601,

SLC22A10, SLC22A9, HRASLS5, LGALS12, RARRES3, HRASLS2, HRASLS3, DKFZP564J086, RTN3, LOC144097 V_0150_LC13257_Iafrate et al. (2004), V_4748_LC13245_Wong et al. (2007), V_4749_LC13256_Wong et al. (2007) q12.2-q13.1

11 63724994 67575198 RP11-165G4 RP11-134F13 32 3.850204 0.605559084

STIP1, URP2, TRPT1, NUDT22, DNAJC4, VEGFB, FKBP2, PPP1R14B, PLCB3, BAD, GPR137, KCNK4, ESRRA, HSPC152, PRDX5, CCDC88, RPS6KA4, SLC22A11, SLC22A12, NRXN2, RASGRP2, PYGM, SF1, MAP4K2, MEN1, CDC42BPG, EHD1, KIAA0404, PPP2R5B, GPHA2, LOC283129, BATF2, ARL2, SNX15, SAC3D1, NAALADL1, CDCA5, ZFPL1, C11orf2, TM7SF2, ZNHIT2, FAU, MRPL49, SYVN1, LOC387778, CAPN1, FLJ16331, POLA2, CDC42EP2, DPF2, TIGD3, SLC25A45, FKSG44, SCYL1, LTBP3, SSSCA1, FAM89B, KCNK7, MAP3K11, SIPA1, RELA, HTATIP, RNASEH2C,

DKFZp761E198, OVOL1, FLJ30934, CFL1, MUS81, EFEMP2, CTSW, FIBP, DIPA, FOSL1, C11orf68, DRAP1, TSGA10IP, SART1, MGC11102, BANF1, CST6, CATSPER1, GAL3ST3, SF3B2, PACS1, KLC2, RAB1B, CNIH2, YIF1A, MGC33486, CD248, RIN1, BRMS1, B3GNT1, SLC29A2, NPAS4, MRPL11, PELI3, DPP3, BBS1, ZDHHC24, ACTN3, CTSF, CCDC87, CCS, RBM14, RBM4, RBM4B, SPTBN2, FLJ22531, RCE1, PC, LRFN4, SYT12, RHOD, FBXL11, ADRBK1, ANKRD13D, SSH3, POLD4, CLCF1, RAD9A, PPP1CA, TBC1D10C, RPS6KB2, PTPRCAP, CORO1B, GPR152, CABP4,

TMEM134, AIP, PITPNM1, CDK2AP2, CABP2, GSTP1, C11orf72, NDUFV1, NUDT8, TBX10, ACY3, ALDH3B2, UNC93B1, ALDH3B1, NDUFS8, TCIRG1 V_2169_LC13288_Locke et al. (2006), V_4752_LC13273_Wong et al. (2007), V_4753_LC13273_Wong et al. (2007), V_4754_LC13285_Wong et al. (2007) q13.1-q13.211 70845707 71411226 RP11-684B2 CTD-2512F3 4 0.565519 1.022910062 NADSYN1, KRTAP5-7, KRTAP5-8, KRTAP5-9, KRTAP5-10, KRTAP5-11, FAM86C, DEFB108B, RNF121, IL18BP, NUMA1 q13.411 72854063 74409781 RP11-13K23 RP11-147I3 14 1.555718 0.561720592 KIAA0280, PLEKHB1, RAB6A, MRPL48, CHCHD8, WDR71, DNAJB13, UCP2, UCP3, DKFZP586P012, PPME1, P4HA3, PGM2L1, KCNE3, MGC12965, POLD3, CHRDL2, LOC653566, SPCS2, NEU3 q13.411 76161145 78077219 CTD-2015I5 RP11-15N10 15 1.916074 0.609378076 LRRC54, PHCA, B3GNT6, CAPN5, OMP, MYO7A, GDPD4, PAK1, AQP11, CLNS1A, HBXAP, PTD015, INTS4, KCTD14, THRSP, NDUFC2, ALG8, LOC283219, GAB2, NARS2 V_0151_LC13373_Iafrate et al. (2004), V_4727_LC13373_Wong et al. (2007) q13.5-q14.1

11 78911705 110216712 RP11-258O13 RP11-285P16 281 31.305007 2.347252094

MGC33846, PRCP, FLJ25416, RAB30, PCF11, ANKRD42, MDS025, DLG2, TMEM126B, TMEM126A, ZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5, TYR, NOX4, PSMAL, TRIM49, NAALAD2, CHORDC1, MTNR1B, SLC36A4, CCDC67, C11orf75, JOSD3, C11orf54, CRSP6, PANX1, LOC390243, GPR83, MRE11A, ANKRD49, FUT4, PIWIL4, AMOTL1, HSPC148, JMJD2D, SFRS2B, SESN3, FAM76B, CEP57, MTMR2, MAML2, CCDC82, JRKL, CNTN5, TMEM133, PGR, TRPC6, ANGPTL5, KIAA1377, MGC13040, YAP1, BIRC3, BIRC2, TMEM123, MMP7, MMP20, MMP27, MMP8, MMP10, MMP1, MMP3, MMP12, MMP13, DCUN1D5, DYNC2H1, PDGFD, DDI1, CASP4, CASP5, CASP1, COP1, INCA, ICEBERG, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, LOC643923,

SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10, LOC399947, RDX, FDX1, ARHGAP20

V_0152_LC13403_Iafrate et al. (2004), V_0154_LC13475_Iafrate et al. (2004), V_0155_LC13522_Iafrate et al. (2004), V_0156_LC13530_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006), V_4757_LC13394_Wong et al. (2007), V_4758_LC13426_Wong et al. (2007), V_4759_LC13448_Wong et al. (2007), V_4760_LC13485_Wong et al. (2007), V_4761_LC13567_Wong et al. (2007), V_4991_LC13460_Wong et al. (2007) q14.1-q23.1

11 110878342 111740956 RP11-389C9 RP11-739O7 6 0.862614 0.356738827 BTG4, FLJ46266, LAYN, SNF1LK2, PPP2R1B, ALG9, C11orf1, CRYAB, HSPB2, C11orf52, DIXDC1, DLAT, PIH1D2, C11orf57, TIMM8B, SDHD, IL18, TEX12, BCDO2, PTS q23.111 113516315 114170999 RP11-397N3 RP11-751M16 4 0.654684 0.345943832 ZBTB16, NNMT, C11orf71, RBM7, REXO2, FAM55A, FAM55D, FAM55B V_4763_LC13589_Wong et al. (2007) q23.211 116250687 116825474 RP11-2O20 RP11-677N11 3 0.574787 0.364307002 KIAA0999, PAFAH1B2, SIDT2, TAGLN, PCSK7, DKFZp547C195, BACE1, CEP164, DSCAML1 q23.3

11 117373062 118758082 RP11-454P15 RP11-150H9 13 1.38502 0.49169955IL10RA, TMPRSS4, SCN4B, SCN2B, AMICA1, LOC196264, EVA1, CD3E, CD3D, CD3G, UBE4A, ATP5L, MLL, FLJ11783, LOC143941, TMEM25, C11orf60, ARCN1, PHLDB1, TREH, DDX6, BLR1, BCL9L, UPK2, FOXR1, CCDC84, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX,

DPAGT1, TMEM24, MIZF, ABCG4, NOD9, PDZD3, LOC283152, CBL, MCAM, RNF26, C1QTNF5, MFRP, USP2 q23.311 119634002 119939639 RP11-472E19 RP11-117K21 3 0.305637 0.340440951 POU2F3, TMEM136, ARHGEF12 q23.3

11 120451301 125813499 RP11-32A17 RP11-328I6 44 5.362198 0.604854829

LRRC35, TECTA, SC5DL, SORL1, BRCC2, STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3, OR8B4, OR8B8, OR8B12, OR8A1, PANX3, TBRG1, SIAE, SPA17, NRGN, VSIG2, ESAM, C11orf61, ROBO3, ROBO4, HEPACAM, HEPN1, CCDC15, SLC37A2, LOC219854, PKNOX2, FEZ1, EI24, STT3A, CHEK1, ACRV1, PATE, C11orf38, HYLS1, PUS3, DDX25, CDON, RPUSD4, FAM118B, SRPR,

FOXRED1, TIRAP, DCPS, ST3GAL4, KIRREL3 V_5037_LC13656_Wong et al. (2007) q23.3-q24.211 126559530 129957674 RP11-281D23 RP11-818H7 30 3.398144 0.569400845 ETS1, FLI1, KCNJ1, KCNJ5, C11orf45, P53AIP1, RICS, BARX2, TMEM45B, NFRKB, PRDM10, APLP2, ST14, BTBD15, ADAMTS8, ADAMTS15 q24.2-q24.312 16595 1427788 RP13-492B24 CTD-2006P14 13 1.411193 0.572684628 IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2 p13.33

12 1886063 10511710 RP11-784K15 RP11-659J16 84 8.625647 0.648155491

CACNA2D4, DCP1B, CACNA1C, FKBP4, ITFG2, NRIP2, FOXM1, C12orf32, TULP3, TEAD4, TSPAN9, PRMT8, MGC4266, PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B, VWF, CD9, PLEKHG6, TNFRSF1A, SCNN1A, LTBR, CD27, TAPBPL, VAMP1, MRPL51, CNAP1, GAPDH, HOM-TES-103, NOL1, CHD4, GPR92, ACRBP, ING4, ZNF384, C12orf53, COPS7A, MLF2, PTMS, LAG3, CD4, GPR162, LEPREL2, GNB3, CDCA3, USP5, TPI1, SPSB2, LRRC23, ENO2, ATN1, C12orf57, PTPN6, PHB2, EMG1, OACT5, C1S, C1R, C1RL, RBP5, CLSTN3, PEX5, LOC341392, CD163L1, CD163, APOBEC1, GDF3, DPPA3, CLEC4C, NANOG, SLC2A14, SLC2A3, FOXJ2, C3AR1, NECAP1, CLEC4A, ZNF705A, FAM90A1, CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, FAM80B, A2ML1, PHC1,

M6PR, KLRG1, C12orf33, A2M, PZP, KLRB1, CLEC2D, DCAL1, CD69, KLRF1, CLEC2B, CLEC12A, CLEC1B, CLEC12B, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRK1, KLRC4, KLRC3, KLRC2, KLRC1 V_0161_LC13778_Iafrate et al. (2004), V_4766_LC13773_Wong et al. (2007), V_4768_LC13827_Wong et al. (2007) p13.33-p13.212 34289964 36325995 RP11-190B24 RP11-572H20 3 2.036031 0.462828191 V_4775_LC13974_Wong et al. (2007) p11.1-q11

12 46312647 47881680 RP11-206J5 CTD-2315D6 21 1.569033 0.353411567FLJ21908, P11, RAPGEF3, FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA, C12orf41, CCNT1, ADCY6, CACNB3, DDX23, RND1, CCDC65, FKBP11, ARF3, WNT10B, WNT1, DDN, PRKAG1,

MLL2, RHEBL1, DHH, LMBR1L, K-ALPHA-1, TUBA3 V_4777_LC14039_Wong et al. (2007) q13.11-q13.12

12 48529535 52672753 RP11-160B8 RP11-84N2 46 4.143218 0.48586237

FAIM2, AQP2, AQP5, AQP6, RACGAP1, ACCN2, SMARCD1, GPD1, C12orf62, LASS5, LIMA1, LARP4, DIP2B, ATF1, TMPRSS12, METTL7A, SLC11A2, LETMD1, C12orf22, TFCP2, POU6F1, DAZAP2, LOC57228, BIN2, ELA1, GALNT6, SLC4A8, SCN8A, LOC401720, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRTHB1, KRTHB6, KRTHB3, KRT85, KRTHB4, KRTHB2, K6HF, KRT6B, KRT6C, KRT6A, KRT5, KRT6IRS, K6IRS4, K6IRS2, K6IRS3, KRT2A, KRT1, KRT1B, KRT76, KRT3, KRT4, KRT6L, K5B, KRT8, KRT18, EIF4B, TENC1, SPRYD3, IGFBP6, SOAT2,

CSAD, ZNF740, ITGB7, RARG, MFSD5, ESPL1, PFDN5, C12orf10, AAAS, SP7, SP1, AMHR2, PRR13, PCBP2, MAP3K12, TARBP2, NPFF, ATF7, ATP5G2, CALCOCO1, HOXC13, HOXC12, HOXC11, HOXC10 V_4778_LC14057_Wong et al. (2007) q13.13

12 52817323 55617585 RP11-78F22 RP11-757D5 32 2.800262 0.440592929

SMUG1, CBX5, HNRPA1, NFE2, COPZ1, GPR84, ZNF385, ITGA5, FAM112B, NCKAP1L, PDE1B, PPP1R1A, LACRT, DCD, SBEM, NEUROD4, OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4, OR10P1, METTL7B, ITGA7, BLOC1S1, RDH5, CD63, GDF11, CIP29, ORMDL2, DNAJC14, MMP19, WIBG, DGKA, SILV, CDK2, RAB5B, SUOX, IKZF4, RPS26, ERBB3, PA2G4, RPL41, ZC3H10, FAM62A, MYL6B, MYL6, SMARCC2, RNF41, OBFC2B, SLC39A5, COQ10A, CS, TMEM4, USP52, IL23A, STAT2, APOF, TIMELESS,

MIP, SPRYD4, GLS2, RBMS2, BAZ2A, ATP5B, PTGES3, NACA, PRIM1, HSD17B6, SDR-O V_0164_LC14085_Iafrate et al. (2004), V_4780_LC14080_Wong et al. (2007) q13.13-q13.312 56047087 57340396 RP11-746D11 RP11-767I20 18 1.293309 0.369602181 INHBC, INHBE, GLI1, ARHGAP9, MARS, DDIT3, MBD6, DCTN2, KIF5A, PIP5K2C, DTX3, GEFT, SLC26A10, B4GALNT1, OS9, CENTG1, TSPAN31, CDK4, CYP27B1, METTL1, DKFZP586D091, TSFM, AVIL, CTDSP2, XRCC6BP1 q13.3-q14.1

12 61713807 71692567 RP11-715H19 RP11-344L3 112 9.97876 1.011322948AVPR1A, DPY19L2, TMEM5, SRGAP1, FLJ32549, XPOT, TBK1, RASSF3, GNS, WIF1, LEMD3, MSRB3, HMGA2, C12orf31, TMBIM4, IRAK3, HELB, GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B, NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10,

VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, PSRC2, THAP2, TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE V_2171_LC14120_Locke et al. (2006), V_4781_LC14179_Wong et al. (2007) q14.2-q21.1

12 90282475 121978532 RP11-711P14 RP11-32O4 338 31.696057 0.617488476

APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A8, NR1H4, GAS2L3, TMEM16D, SLC5A8, UTP20, ARL1, SPIC, MYBPC1, CHPT1, SYCP3, GNPTAB, DRAM, CCDC53, NUP37, C12orf48, PMCH, IGF1, PAH, ASCL1, C12orf42, STAB2, NT5DC3, HSP90B1, TDG, GLT8D2, HCFC2, NFYB, TXNRD1, EID3, CHST11, SLC41A2, C12orf45, ALDH1L2, KIAA1033, DIP13B, NUAK1, CKAP4, TCP11L2, POLR3B, RFX4, RIC8B, C12orf23, MTERFD3, CRY1, BTBD11, PWP1, PRDM4, ASCL4, KIAA0789, CMKLR1, HYPE, SART3, NIFUN, TMEM119, SELPLG, CORO1C,

SSH1, DAO, SVOP, USP30, ALKBH2, UNG, ACACB, FOXN4, KCTD10, UBE3B, MMAB, MVK, C12orf34, TRPV4, GLTP, TCHP, GIT2, ANKRD13, FLJ40142, IFT81, ATP2A2, ANAPC7, ARPC3, ATPBD1C, C12orf24, VPS29, RAD9B, PPTC7, TECT1, HVCN1, PPP1CC, CCDC63, MYL2, CUTL2, FAM109A, LNK, ATXN2, BRAP, ACAD10, ALDH2, MAPKAPK5, TMEM116, ERP29, C12orf30, TRAFD1, C12orf51, RPL6, PTPN11, RPH3A, OAS1, OAS3, OAS2, DTX1, RASAL1, DDX54, C12orf52, IQCD, TPCN1, SLC24A6, LOC196463, SDS, SDSL, LHX5, RBM19, TBX5, TBX3, THRAP2, FLJ42957,

C12orf49, TMEM118, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2, RFC5, WSB2, FLJ20674, PEBP1, TAOK3, SUDS3, KIAA1853, HSPB8, CCDC60, PV_0166_LC14429_Iafrate et al. (2004), V_4786_LC14380_Wong et al. (2007), V_4787_LC14460_Wong et al. (2007), V_4788_LC14466_Wong et al. (2007),


12 122119211 132289529 RP11-649A11 CTD-2140B24 96 10.170318 0.544439999PITPNM2, MPHOSPH9, C12orf65, CDK2AP1, SBNO1, SETD8, MGC7036, U1SNRNPBP, FLJ39378, TMED2, DDX55, EIF2B1, GTF2H3, C12orf38, ATP6V0A2, DNAH10, CCDC92, ZNF664, FAM101A, NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS, TMEM132B, SLC15A4, GLT1D1, TMEM132D,

FZD10, PIWIL1, RIMBP2, EPIM, RAN, GPR133, SFRS8, MMP17, ULK1, PUS1, EP400, DDX51, NOC4L, GALNT9, P2RX2, POLE, PXMP2, PGAM5, GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10, ZNF268

V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. (2006), V_4404_LC14595_Wong et al. (2007), V_4790_LC14504_Wong et al. (2007), V_4792_LC14514_Wong et al. (2007), V_4793_LC14538_Wong et al. (2007), V_4794_LC14556_Wong et al. (2007), V_4795_LC14556_Wong et al. (2007),

V_4796_LC14595_Wong et al. (2007) q24.31-q24.33

13 48654459 54432567 RP11-103J18 RP11-644H21 59 5.778108 0.521515936FNDC3A, MLNR, CDADC1, CAB39L, SETDB2, PHF11, RCBTB1, ARL11, EBPL, KPNA3, C13orf1, RFP2, KCNRG, DLEU7, FLJ11712, FLJ30707, INTS6, WDFY2, FLJ13639, CCDC70, ATP7B, LOC440138, UTP14C, NEK5, NEK3, THSD1, VPS36, CKAP2, LOC144983, SUGT1, LECT1, PCDH8,

OLFM4 V_4804_LC14867_Wong et al. (2007) q14.2-q21.113 72128559 81035231 RP11-689G15 RP11-121H16 82 8.906672 0.926103667 LOC440145, FLJ22624, KIAA1008, C13orf24, KLF5, KLF12, TBC1D4, COMMD6, UCHL3, LMO7, KCTD12, CLN5, FBXL3, MYCBP2, SCEL, FLJ30046, EDNRB, POU4F1, C13orf7, C13orf10, NDFIP2, SPRY2 V_0171_LC15037_Iafrate et al. (2004), V_4812_LC15022_Wong et al. (2007) q22.1-q31.1

13 89575097 111808484 CTD-2005J23 RP11-158K19 189 22.233387 0.578000742GPC5, GPC6, DCT, TGDS, GPR180, SOX21, ABCC4, CLDN10, DZIP1, DNAJC3, UGCGL2, HS6ST3, OXGR1, MBNL2, RAP2A, RANBP5, FARP1, RNF113B, STK24, SLC15A1, DOCK9, PHGDHL1, GPR18, EBI2, TM9SF2, CLYBL, ZIC5, ZIC2, PCCA, TMTC4, VGCNL1, ITGBL1, FGF14, TPP2,

LOC196541, LOC93081, KDELC1, BIVM, ERCC5, SLC10A2, DAOA, EFNB2, FLJ10154, LOC728215, LIG4, ABHD13, TNFSF13B, MYR8, IRS2, COL4A1, COL4A2, RAB20, FLJ10769, FLJ12118, ING1, ANKRD10, ARHGEF7, MGC35169, SOX1V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007),

V_4818_LC15212_Wong et al. (2007), V_0361_LC15215_Shaw-Smith et al. (2004) q31.3-q3413 113932258 114117194 RP11-226B11 RP11-228M6 4 0.184936 0.354568551 CDC16, UPF3A, C13orf8 q34

14 74481371 77164960 RP11-100B23 RP11-296C19 22 2.683589 0.731399739PGF, EIF2B2, MLH3, ACYP1, C14orf140, NEK9, TMED10, FOS, JDP2, BATF, C14orf58, C14orf1, TTLL5, TGFB3, MGC16028, C14orf118, ESRRB, VASH1, ANGEL1, C14orf166B, C14orf4, KIAA1737, ZDHHC22, TMEM63C, NGB, POMT2, GSTZ1, TMED8, C14orf174, C14orf148, C14orf133, AHSA1,

THSD3, SPTLC2 V_4840_LC15786_Wong et al. (2007) q24.314 99196345 100598366 RP11-282F17 RP11-394A16 15 1.402021 0.413694459 KIAA1822, CYP46A1, EML1, EVL, DEGS2, YY1, SLC25A29, C14orf68, WARS, WDR25, KIAA1446, DLK1, FLJ41170 q32.2-q32.3114 102906065 103442515 RP11-659M13 RP11-532E10 7 0.53645 0.370633521 MARK3, CKB, C14orf172, BAG5, C14orf153, KNS2, XRCC3, ZFYVE21, PPP1R13B q32.32-q32.33

14 103531747 106318374 RP11-638H21 CTD-2313E3 26 2.786627 0.624599368 TDRD9, LOC374569, LOC400258, FLJ42486, C14orf151, C14orf173, ADSSL1, SIVA1, AKT1, KIAA0284, PLD4, C14orf79, CDCA4, GPR132, JAG2, NUDT14, BRF1, BTBD6, PACS2, MTA1, CRIP2, CRIP1, C14orf80, TMEM121


V_4859_LC16055_Wong et al. (2007), V_4860_LC16055_Wong et al. (2007), V_0377_LC16055_Bejjani et al. (2005) q32.3315 21805449 25748884 RP11-350A1 RP11-370I1 38 3.943435 0.39240656 C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2 V_0183_LC16121_Iafrate et al. (2004), V_4880_LC16090_Wong et al. (2007), V_4881_LC16090_Wong et al. (2007) q11.2-q13.1

15 61950195 69366935 RP11-804E8 RP11-47G3 58 7.41674 0.624147581DAPK2, FAM96A, SNX1, SNX22, PPIB, CSNK1G1, KIAA0101, TRIP4, ZNF609, OAZ2, RBPMS2, C15orf20, PLEKHQ1, ANKDD1A, SPG21, MTFMT, OSTbeta, RASL12, PDCD7, CLPX, CILP, PARP16, PUNC, NOPE, DPP8, PTPLAD1, C15orf44, SLC24A1, DENND4A, RAB11A, MEGF11, MGC4562,

FLJ20516, MAP2K1, SNAPC5, RPL4, ZWILCH, LCTL, SMAD6, SMAD3, FLJ11506, IQCH, MAP2K5, LBXCOR1, PIAS1, CALML4, CLN6, FEM1B, ITGA11, CORO2B, ANP32A, NOX5, SPESP1, GLCE, PAQR5, KIF23, RPLP1, LOC729416, TLE3, UACA, LARP6, THAP10, LRRC49, THSD4 V_0786_LC16331_Sharp et al. (2005), V_2194_LC16374_Locke et al. (2006), V_4904_LC16360_Wong et al. (2007) q22.31-q23

15 69812094 75427942 CTD-2195P4 CTD-2143N11 49 5.615848 0.443703418

THSD4, NR2E3, MYO9A, SENP8, GRAMD2, PKM2, PARP6, BRUNOL6, HEXA, FLJ27523, ARIH1, GOLGA, BBS4, ADPGK, NEO1, HCN4, LOC283677, NPTN, CD276, LOC388135, TBC1D21, LOXL1, STOML1, PML, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, SEMA7A, UBL7, ARID3B, CLK3, LSM16, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, SCAMP2, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC, C15orf39, COMMD4, NEIL1, MAN2C1, SIN3A, PTPN9, SNUPN, IMP3, SH3PX3, CSPG4, ODF3L1, UBE2Q2, FBXO22, NRG4, C15orf27, ETFA, ISL2, ZNF291, RCN2, PSTPIP1,

TSPAN3 V_0189_LC16389_Iafrate et al. (2004), V_2195_LC16389_Locke et al. (2006), V_2196_LC16398_Locke et al. (2006), V_4905_LC16412_Wong et al. (2007) q23-q24.3

15 76011112 84101711 RP11-323B14 RP11-815J21 63 8.090599 0.413590051TBC1D2B, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, LOC123688, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, MORF4L1, CTSH, RASGRF1, TMED3, KIAA1024, MTHFS, C15orf37, BCL2A1, ZA20D3, FAH, ARNT2, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5,

TMC3, RKHD3, EFTUD1, DKFZp666G057, FLJ22795, RPS17, CPEB1, AP3B2, FSD2, WHDC1, HOMER2, FAM103A1, C15orf40, BTBD1, TM6SF1, HDGFRP3, BNC1, SH3GL3, ADAMTSL3, KIAA1920, ZSCAN2, WDR73, NMB, SEC11L1, ZNF592, ALPK3, SLC28A1, PDE8A, AKAP13

V_0190_LC16450_Iafrate et al. (2004), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4907_LC16456_Wong et al. (2007) q24.3-q25.3

15 84488154 100260946 RP11-567J11 RP11-95F11 137 15.772792 0.413511155

FLJ32310, NTRK3, MRPL46, MRPS11, DET1, ISG20L1, ISG20, ACAN, HAPLN3, MFGE8, ABHD2, RLBP1, KIAA1794, POLG, RHCG, C15orf42, KIF7, PLIN, PEX11A, LOC56964, MESP1, MESP2, ANPEP, AP3S2, C15orf38, ZNF710, IDH2, SEMA4B, CIB1, LOC390637, TTLL13, NGRN, MGC75360, IQGAP1, CRTC3, BLM, FURIN, FES, MAN2A2, HDDC3, UNC45A, RCCD1, PRC1, VPS33B, SV2B, SLCO3A1, ST8SIA2, C15orf32, LOC400451, CHD2, RGMA, MCTP2, NR2F2, SPATA8, ARRDC4, FLJ39743, IGF1R, DMN, TTC23, LRRC28, MEF2A, LYSMD4, LOC400464, ADAMTS17, FLJ42289,

LASS3, LINS1, ASB7, LOC440313, ALDH1A3, LRRK1, CHSY1, SELS, SNRPA1, PCSK6, TM2D3, TARSL2, OR4F6, OR4F15V_0192_LC16541_Iafrate et al. (2004), V_0193_LC16579_Iafrate et al. (2004), V_2201_LC16579_Locke et al. (2006), V_2202_LC16579_Locke et al. (2006), V_4908_LC16467_Wong et al. (2007), V_4909_LC16491_Wong et al. (2007), V_4910_LC16491_Wong et al. (2007), V_4911_LC16537_Wong et al. (2007) q25.3-q26.3

16 83324310 83938906 RP11-345D12 RP11-805C17 8 0.614596 0.316068631 USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B q24.1

16 87118577 88686715 RP11-616F21 RP11-665E3 17 1.568138 0.597618537ZFPM1, FLJ45530, NHN1, IL17C, CYBA, MVD, SNAI3, RNF166, LOC348180, FAM38A, FLJ45121, FLJ40448, CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3, LOC197322, CDH15, ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A, PCOLN3, C16orf55, CDK10, MGC26885, C16orf7,

ZNF276, FANCA, SPIRE2, NULP1, MC1R, TUBB3, FLJ20186, MGC16385, DBNDD1, MGC3101, GAS8, C16orf3, PRDM7V_0200_LC17076_Iafrate et al. (2004), V_4973_LC17076_Wong et al. (2007), V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong et al. (2007),

V_4976_LC17076_Wong et al. (2007), V_4977_LC17076_Wong et al. (2007), V_4978_LC17076_Wong et al. (2007) q24.2-q24.317 52192 997949 CTD-2326F1 RP11-747K6 13 0.945757 0.390819664 RPH3AL, LOC400566, FAM101B, VPS53, FAM57A, GEMIN4, C17orf25, RNMTL1, NXN, TIMM22, ABR V_4979_LC17159_Wong et al. (2007), V_4980_LC17159_Wong et al. (2007) p13.3

17 1530198 16646713 RP11-202G16 RP11-92B11 145 15.116515 0.46219235

OR1E2, SPATA22, ASPA, TRPV3, TRPV1, CARKL, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, P2RX1, ATP2A3, ZZEF1, CYB5D2, ANKFY1, UBE2G1, MGC29671, MYBBP1A, GGT6, FLJ42461, ALOX15, PELP1, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, LOC388323, PSMB6, PLD2, MINK1, CHRNE, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, UNQ5783, RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1, KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753,

TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1, ALOX12, MGC71993, C17orf49, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2, PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, TMEM95, TNK1, PLSCR3, C17orf61, NLGN2, C17orf83, C17orf74, TMEM102, FGF11, CHRNB1, ZBTB4, POLR2A, TNFSF12, TNFSF12-TNFS, TNFSF13, SENP3, EIF4A1, CD68, MPDU1, SOX15, FXR2, SAT2, SHBG, ATP1B2, TP53, WDR79, EFNB3, DNHD3, JMJD3, TMEM88, LSMD1, CYB5D1, CHD3,

KCNAB3, TRAPPC1, CNTROB, GUCY2D, ALOX15B, ALOX12B, ALOXE3, HES7, PER1, VAMP2, TMEM107, C17orf59, AURKB, C17orf68, PFAS, SLC

V_0798_LC17354_Sharp et al. (2005), V_2217_LC17259_Locke et al. (2006), V_2218_LC17354_Locke et al. (2006), V_4981_LC17250_Wong et al. (2007), V_4982_LC17265_Wong et al. (2007), V_4983_LC17269_Wong et al. (2007), V_4984_LC17276_Wong et al. (2007), V_4985_LC17280_Wong et al. (2007), V_4986_LC17280_Wong et al. (2007), V_4987_LC17280_Wong et al. (2007), V_4988_LC17315_Wong et al. (2007), V_4989_LC17333_Wong et al. (2007) p13.3-p11.2

17 16721253 18099740 RP11-801O7 RP11-189D22 13 1.378487 0.362226124 TNFRSF13B, M-RIP, LOC201164, FLCN, COPS3, NT5M, MED9, RASD1, PEMT, RAI1, SREBF1, TOM1L2, LRRC48, ATPAF2, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII V_4990_LC17383_Wong et al. (2007) p11.2

17 18445989 20236821 RP11-431M24 CTD-2204I5 26 1.790832 0.281348683 FLJ36492, FLJ40244, TRIM70, FBXW10, FAM18B, PRPSAP2, SLC5A10, FAM83G, GRAP, EPN2, EPPB9, MAPK7, MFAP4, ZNF179, FLJ10847, ALDH3A2, FLJ31196, ALDH3A1, ULK2, AKAP10, SPECC1 V_4993_LC17390_Wong et al. (2007), V_4994_LC17394_Wong et al. (2007), V_4995_LC17400_Wong et al. (2007), V_4996_LC17400_Wong et al. (2007) p11.217 20438273 21035617 RP11-694J11 RP11-765A10 4 0.597344 0.302381293 MGC87631, DHRS7B V_4997_LC17400_Wong et al. (2007) p11.217 21297624 23308267 RP11-564H22 RP11-138P22 19 2.010643 0.663513808 FAM27L, WSB1, KSR1, LGALS9, NOS2A, LOC201229 V_4998_LC17406_Wong et al. (2007) p11.2-q11.217 24124322 24926839 RP11-154P20 RP11-659G19 6 0.802517 0.569469044 C17orf63, ERAL1, FLOT2, MGC23280, PHF12, SEZ6, PIPOX, MYO18A, TIAF1, CRYBA1, NUFIP2, TAOK1, LOC116236, TP53I13, GIT1 q11.217 25730779 26063090 RP11-310M18 RP11-464F15 3 0.332311 0.310810524 CPD, GOSR1, DKFZP434O047 q11.2

17 28430342 32221507 RP11-68B4 RP11-53P6 38 3.791165 0.786093926ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, FLJ44815, TMEM132E, CCT6B, CCDC16, LIG3, RFFL, RAD51L3, FNDC8, NLE1, UNC45B, AMAC1, SLFN5, FLJ34922, FLJ10260, SLFN13, PEX12, AP2B1, RASL10B, GAS2L2, C17orf50, MMP28, TAF15, C17orf66, CCL5, RDM1, LYZL6, CCL16,

CCL14, CCL15, CCL23, CCL18, CCL3, CCL4, CCL3L1, CCL3L3, CCL4L1, CCL4L2, TBC1D3C, LOC654341, ZNHIT3, MYOHD1, PIGW, ZNF403, MGC4172, MRM1V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_2220_LC17457_Locke et al. (2006), V_2221_LC17457_Locke et al. (2006),

V_2222_LC17457_Locke et al. (2006), V_2223_LC17457_Locke et al. (2006), V_5003_LC17457_Wong et al. (2007) q11.2-q1217 32529010 32904862 RP11-19G24 RP11-151G23 4 0.375852 0.79426825 ACACA, C17orf78, TADA2L q12

17 33840062 35916681 RP11-12M17 RP11-259G21 23 2.076619 1.011199552SNIP, MLLT6, PCGF2, PSMB3, PIP5K2B, CCDC49, LOC388381, RPL23, LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, FBXL20, PPARBP, CRKRS, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, ZNFN1A3, ZPBP2, GSDML, ORMDL3, GSDM1, PSMD3,

CSF3, THRAP4, THRA, NR1D1, CASC3, RAPGEFL1, WIRE, CDC6, RARA, GJC1, TOP2A, IGFBP4, TNS4 V_2224_LC17457_Locke et al. (2006), V_5006_LC17473_Wong et al. (2007) q12-q21.2

17 37680398 46110829 RP11-606M7 RP11-121F10 108 8.430431 1.12781257

STAT5B, STAT5A, STAT3, PTRF, ATP6V0A1, NAGLU, HSD17B1, COASY, MLX, PSMC3IP, LOC162427, TUBG1, TUBG2, PLEKHH3, CCR10, CNTNAP1, EZH1, RAMP2, VPS25, WNK4, CCDC56, CNTD, BECN1, PSME3, AOC2, AOC3, G6PC, AARSD1, RUNDC1, RPL27, IFI35, VAT1, RND2, BRCA1, NBR1, TMEM106A, ARL4D, DHX8, ETV4, MEOX1, SOST, DUSP3, MPP3, CD300LG, MPP2, PPY, PYY, NAGS, TMEM101, LSM12, G6PC3, HDAC5, C17orf53, ASB16, C17orf65, TMUB2, UBTF, SLC4A1, RPIP8, CGI-69, GRN, ITGA2B, KIAA0553, FZD2, FLJ35848, CCDC43, DBF4B,

ADAM11, GJA7, HIGD1B, EFTUD2, LOC388389, GFAP, LOC146909, C1QL1, DCAKD, NMT1, PLCD3, ACBD4, HEXIM1, HEXIM2, FMNL1, C17orf46, MAP3K14, ARHGAP27, LOC201175, PLEKHM1, C17orf69, CRHR1, IMP5, MAPT, STH, KIAA1267, LRRC37A, LOC474170, ARL17, NSF, WNT3, WNT9B, GOSR2, RPRML, CDC27, MYL4, ITGB3, C17orf57, NPEPPS, KPNB1, TBKBP1, TBX21, OSBPL7, MRPL10, LRRC46, SCRN2, SP6, SP2, PNPO, ATAD4, CDK5RAP3, COPZ2, NFE2L1, CBX1, SNX11, SKAP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9,

PRAC, HOXB13, TTLL6, CALCOCO2, ATP5G1, UBE2Z, SNF8, GIP, IGF2BP1, B4GALNT2, GNGT2, ABI3, PHOSPHO1, ZNF652, PHB, NGFR, NXPH3, SPOP, SLC35B1, LOC81558, MYST2, TAC4, DLX4, DLX3, ITGA3, PDK2, SAMD14, PPP1R9B, SGCA, HILS1, COL1A1, TMEM92, XYLT2, MRPL27, EME1, LRRC59, FLJ20920, CHAD, RSAD1, MYCBPAP, EPN3, SPATA20, CACNA1G, ABCC3

V_0206_LC17502_Iafrate et al. (2004), V_0207_LC17522_Iafrate et al. (2004), V_0208_LC17538_Iafrate et al. (2004), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006), V_2229_LC17530_Locke et al. (2006), V_5007_LC17508_Wong et al. (2007), V_5008_LC17512_Wong et al. (2007), V_5009_LC17516_Wong et al. (2007), V_5010_LC17522_Wong et al. (2007), V_5011_LC17522_Wong et al. (2007), V_5012_LC17522_Wong et al. (2007), V_5014_LC17522_Wong et al. (2007), V_5015_LC17522_Wong et al. (2007),


17 51993133 55572668 RP11-112J9 RP11-50F16 47 3.579535 1.758328045NOG, DGKE, TRIM25, COIL, SCPEP1, AKAP1, MSI2, MRPS23, CUEDC1, ZNF161, SFRS1, DYNLL2, OR4D1, OR4D2, EPX, MKS1, LPO, MPO, BZRAP1, SUPT4H1, RNF43, HSF5, MTMR4, C17orf47, TEX14, RAD51C, PPM1E, TRIM37, FAM33A, PRR11, C17orf71, GDPD1, YPEL2, DHX40, CLTC,

PTRH2, TMEM49, TUBD1, RPS6KB1, LOC51136, ABC1 V_0805_LC17601_Sharp et al. (2005), V_4410_LC17595_Wong et al. (2007) q22-q23.1

17 56017076 65352100 RP11-653P10 RP11-266C8 117 9.335024 0.99951659

PPM1D, BCAS3, TBX2, LOC388407, TBX4, NACAL, BRIP1, INTS2, THRAP1, EFCAB3, METTL2A, TLK2, MRC2, RNF190, CYB561, ACE, KCNH6, WDR68, CCDC44, MAP3K3, LIMD2, LYK5, CCDC47, DDX42, FTSJ3, PSMC5, SMARCD2, CSH2, GH2, CSH1, CSHL1, GH1, CD79B, SCN4A, ICAM2, ERN1, TEX2, PECAM1, POLG2, DDX5, CCDC45, SMURF2, FLJ34306, GNA13, RGS9, AXIN2, CCDC46, APOH, PRKCA, CACNG5, CACNG4, CACNG1, HELZ, PSMD12, PITPNC1, NOL11, BPTF, C17orf58, KPNA2, AMZ2, SLC16A6, ARSG, WIPI1, PRKAR1A, FAM20A, ABCA8, ABCA9, ABCA6,

ABCA10, ABCA5, MAP2K6

V_0210_LC17626_Iafrate et al. (2004), V_0806_LC17642_Sharp et al. (2005), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_2232_LC17640_Locke et al. (2006), V_5020_LC17608_Wong et al. (2007), V_5021_LC17617_Wong et al. (2007), V_5022_LC17631_Wong et al. (2007), V_5023_LC17631_Wong et al. (2007), V_5024_LC17631_Wong et al. (2007), V_5026_LC17636_Wong et al. (2007), V_5027_LC17640_Wong et al. (2007) q23.2-q24.3

17 67376846 70848606 RP11-709B9 RP11-648O11 34 3.47176 0.527565482SOX9, SLC39A11, SSTR2, COG1, FAM104A, C17orf80, CDC42EP4, SDK2, C17orf54, RPL38, TTYH2, DNAI2, KIF19, LOC388419, GPR142, GPRC5C, CD300A, CD300LB, CD300C, C17orf77, CD300E, CD300LF, RAB37, SLC9A3R1, NAT9, TMEM104, GRIN2C, FDXR, FADS6, USH1G, OTOP2,

OTOP3, C17orf28, CDR2L, ICT1, ATP5H, KCTD2, SLC16A5, ARMC7, NT5C, HN1, SUMO2, NUP85, GGA3, MRPS7, MIF4GD, SLC25A19, GRB2 V_5028_LC17688_Wong et al. (2007), V_5029_LC17706_Wong et al. (2007), V_5030_LC17713_Wong et al. (2007) q24.3-q25.1

17 75254546 75605691 CTD-2116F7 RP11-712A9 4 0.351145 0.392709178 ENPP7, CBX2, CBX8, CBX4, TBC1D16 V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006) q25.318 13855315 15399258 RP11-715K10 RP11-390I6 14 1.543943 0.429989259 MC2R, ZNF519, MGC26718 V_5046_LC17976_Wong et al. (2007) p11.2118 18394697 18900408 RP11-601P1 RP11-597F15 3 0.505711 0.497310989 RBBP8 q11.2

19 1600211 23505661 CTD-2528O8 RP11-642I13 237 21.90545 0.758508079

TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4, LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R, C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK, KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2,

PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2, KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30, FEM1A, TICAM1, M6PRBP1, ARRDC5, C19orf31, UHRF1, JMJD2B, PTPRS, ZNRF4, PLAC2, SAFB2, SAFB, P117, SCDR10, RPL36, PRSS15, TMEM146, MGC24975, DUS3L, NRTN, FUT6, FUT3, FUT5, NDUFA11, VMAC, CAPS, RANBP3, RFX2, ACSBG2, MLLT1, ASAH3, CLPP, ALKBH7, PSPN, GTF2F1, KHSRP, SLC25A41, SLC25A23, CRB3, DENND1C,

TUBB4, TNFSF9, CD70, TNFSF14, C3, GPR108, TRIP10, SH2D3A, VAV1, EMR1, EMR4, MBD3L2, ZNF557, INSR, ARHGEF18, PEX11G, FLJ35784, ZNF358, MCOLN1, PNPLA6, KIAA1543, XAB2, PCP2, STXBP2, RETN, MCEMP1, TRAPPC5, FCER2, CLEC4G, CD209, CLEC4M, EVI5L, FLJ22184, LRRC8E, MAP2K7, SNAPC2, CTXN1, TIMM44, ELAVL1, CCL25, FBN3, LASS4, CD320, NDUFA7, RPS28, ANKRD47, ANGPTL4, RAB11B, HNRPM, P

V_0220_LC18794_Iafrate et al. (2004), V_0808_LC18794_Sharp et al. (2005), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et al. (2006), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007), V_5069_LC18671_Wong et al. (2007), V_5070_LC18730_Wong et al. (2007), V_5071_LC18730_Wong et al. (2007), V_5072_LC18736_Wong et al. (2007), V_5073_LC18746_Wong et al. (2007), V_5074_LC18749_Wong et al. (2007), V_5075_LC18752_Wong et al. (2007), V_5076_LC18770_Wong et al. (2007), V_5077_LC18773_Wong et al. (2007), V_5078_LC18783_Wong et al. (2007), V_5079_LC18794_Wong et al. (2007), V_5080_LC18794_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007), V_5087_LC18821_Wong et al. (2007), V_5088_LC18841_Wong et al. (2007), V_5089_LC18844_Wong et al. (2007), V_5090_LC18847_Wong et al. (2007), V_5091_LC18881_Wong et al. (2007),

V_5092_LC18883_Wong et al. (2007), V_5093_LC18883_Wong et al. (2007), V_5094 p13.3-p1219 34159859 35094215 RP11-715C22 RP11-104J24 8 0.934356 2.025472934 UQCRFS1, POP4, PLEKHF1, C19orf12, CCNE1 q12

19 35155612 49710652 RP11-652C23 RP11-2O22 159 14.55504 1.743175889

ZNF181, ZNF599, ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467, ZD52F10, SBSN, GAPDHS, NIFIE14, ATP4A, MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6, LOC148137, SNX26, PRODH2, NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565, ZNF146, KIAA1559, ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345, DKFZp779O175, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B,

KCNK6, C19orf15, PSMD8, GGN, SPRED3, FAM98C, RASGRP4, RYR1, MAP4K1, EIF3S12, ACTN4, CAPN12, LGALS7, LOC653499, LGALS4, ECH1, HNRPL, FLJ45909, SIRT2, NFKBIB, SARS2, MRPS12, FBXO17, FBXO27, FLJ16165, PAK4, LOC342897, SYCN, IL28B, IL28A, IL29, GMFG, SAMD4B, PAF1, IXL, ZFP36, PLEKHG2, RPS16, SUPT5H, TIMM50, DLL3, SELV, EID-3, CRI2, LGALS13, LGALS14, CLC, DYRK1B, FBL, FCGBP, PS

V_2243_LC19026_Locke et al. (2006), V_2244_LC19026_Locke et al. (2006), V_2245_LC19036_Locke et al. (2006), V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007), V_5099_LC18991_Wong et al. (2007), V_5100_LC19016_Wong et al. (2007), V_5101_LC19026_Wong et al. (2007),

V_5102_LC19026_Wong et al. (2007) q12-q13.31

19 50285728 63770533 RP11-577I16 CTD-2575K21 191 13.484805 0.610131894

GEMIN7, NKPD1, TRAPPC6A, BLOC1S3, XTP7, MARK4, CKM, KLC3, ERCC2, PPP1R13L, CD3EAP, ERCC1, FOSB, RTN2, FLJ40125, VASP, OPA3, GPR4, EML2, GIPR, SNRPD2, QPCTL, FBXO46, SIX5, DMPK, DMWD, RSHL1, SYMPK, FOXA3, IRF2BP1, LOC339344, NANOS2, NOVA2, LOC729440, PGLYRP1, IGFL4, IGFL3, IGFL2, IGFL1, HIF3A, PPP5C, CCDC8, FLJ10781, LOC400707, CALM3, PTGIR, GNG8, MGC15476, PRKD2, STRN4, FKRP, SLC1A5, AP2S1, GRLF1, NPAS1, FLJ20512, C19orf7, SAE1, BBC3, CCDC9, C5AR1, GPR77, DHX34, MEIS3, SLC8A2, KPTN,

NAPA, GLTSCR1, EHD2, GLTSCR2, SEPW1, TPRX1, CRX, SULT2A1, ELSPBP1, CABP5, PLA2G4C, LIG1, LOC374920, CARD8, ZNF114, FLJ32926, EMP3, FLJ10922, SYNGR4, KDELR1, GRIN2D, GRWD1, KCNJ14, PSCD2, LMTK3, SULT2B1, FAM83E, SPACA4, RPL18, SPHK2, DBP, CA11, LOC126147, FUT2, FLJ36070, RASIP1, IZUMO1, FUT1, FGF21, BCAT2, DHRS10, PLEKHA4, PPP1R15A, TULP2, NUCB1, DHDH, BAX, FTL, GYS1, RUVBL2, LHB, CGB, CGB2, CGB1, CGB5, CGB8, CGB7, NTF5, KCNA7, SNRP70, LIN7B, FLJ10490, PPFIA3, HRC, TRPM4, SLC6A16, CD37,

TEAD2, DKKL1, FLJ32658, TIP39, SLC17A7, FLJ20643, ALDH16A1, FLT3LG, RPL13A, RPS11, FCGRT, RCN3, NOSIP, PRRG2, RRAS, SR-A1, IRF3, BCL2L12, PRMT1, CPT1C, TSKS, AP2A1, FLJ22688, MED25, PTOV1, PNKP, AKT1S1, TBC1D17, IL4I1, NUP62, ATF5, SIGLEC11, VRK3, ZNF473, FLJ26850, SCRL, MYH14, KCNC3, NAPSA, NR1H2, POLD1, SPIB, MYBPC2, LOC112703, LOC284361, JOSD2, LOC554235, LRRC4B, SYT


V_5119_LC19144_Wong et al. (2007) q13.32-q13.4320 25639533 26013217 CTD-2011E20 RP11-269F15 4 0.373684 0.460387337 p11.21-p11.120 28034381 28252086 CTD-2311M18 CTD-2001C4 3 0.217705 0.564245692 q11.120 34009476 35063611 RP11-224M17 RP11-475F17 15 1.054135 0.302053616 C20orf152, EPB41L1, C20orf4, DLGAP4, MYL9, TGIF2, C20orf24, SLA2, NDRG3, C20orf172, C20orf117, C20orf118, SAMHD1 V_5135_LC19601_Wong et al. (2007) q11.23

20 35702902 48800159 CTD-2320I12 RP11-711M6 109 13.097257 1.062459422

FLJ42133, CTNNBL1, C20orf102, KIAA0406, C20orf77, TGM2, KIAA1755, BPI, LBP, KIAA1219, SMAF1, SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, MAFB, TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT, SFRS6, L3MBTL, SGK2, IFT52, MYBL2, FAM112A, C20orf100, JPH2, C20orf111, GDAP1L1, C20orf142, R3HDML, HNF4A, C20orf121, SERINC3, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35, C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1,

WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13, SPINT4, WFDC3, DNTTIP1, UBE2C, TNNC2, C20orf161, SNX21, ACOT8, ZSWIM3, ZSWIM1, C20orf165, NEURL2, CTSA, PLTP, C20orf67, ZNF335, MMP9, SLC12A5, NCOA5, CD40, CDH22, SLC35C2, ELMO2, ZNF334, SLC13A3, TP53RK, SLC2A10, EYA2, PRKCBP1, NCOA3, SULF2, PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, ZNF313, SNAI1, Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175, PARD6B

V_2251_LC19741_Locke et al. (2006), V_5136_LC19617_Wong et al. (2007), V_5137_LC19651_Wong et al. (2007), V_5138_LC19665_Wong et al. (2007), V_5139_LC19754_Wong et al. (2007), V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q11.23-q13.13

20 49552492 50998926 RP11-320F9 RP11-287I16 13 1.446434 0.792140283 NFATC2, ATP9A, SALL4, ZFP64 V_0226_LC19822_Iafrate et al. (2004) q13.220 57807632 58969913 RP11-700P5 RP11-26B8 9 1.162281 1.34667673 PHACTR3, SYCP2, PPP1R3D, C20orf177, CDH26, FLJ33860, LOC284757 q13.32-q13.33

21 40865697 43933917 RP11-438E18 CTD-2228E9 30 3.06822 0.670913557 DSCAM, BACE2, PLAC4, FAM3B, MX2, MX1, TMPRSS2, C21orf129, RIPK4, PRDM15, C21orf25, ZNF295, UMODL1, ABCG1, TFF3, TFF2, TFF1, TMPRSS3, UBASH3A, TSGA2, SLC37A1, PDE9A, WDR4, NDUFV3, PKNOX1, CBS, U2AF1, CRYAA, FLJ41733, SNF1LK, HSF2BP, KIAA0179 q22.2-q22.3

21 44150512 46926492 RP11-190A24 RP11-457P7 36 2.77598 0.46989881AGPAT3, TMEM1, PWP2H, C21orf33, ICOSLG, DNMT3L, AIRE, PFKL, C21orf2, TRPM2, LRRC3, C21orf29, KRTAP10-1, KRTAP10-2, KRTAP10-3, KRTAP10-4, KRTAP10-5, KRTAP10-6, KRTAP10-7, KRTAP10-8, KRTAP10-9, KRTAP10-10, KRTAP10-11, KRTAP12-4, KRTAP12-3, KRTAP12-2,

KRTAP12-1, KRTAP10-12, UBE2G2, SUMO3, PTTG1IP, ITGB2, C21orf69, C21orf67, C21orf70, ADARB1, PRED57, POFUT2, COL18A1, C21orf123, SLC19A1, PCBP3, COL6A1, COL6A2, FTCD, C21orf56, LSS, MCM3AP, C21orf57, C21orf58, PCNT, DIP2A, S100B, PRMT2 V_5163_LC20269_Wong et al. (2007) q22.322 15254802 16219556 RP11-654C14 CTD-2367L15 9 0.964754 0.352466608 CESK1, XKR3, GAB4, IL17RA, CECR6, CECR5, CECR1 q11.1

22 18506050 21081668 RP11-432P21 RP11-722K16 26 2.575618 0.579647313ZDHHC8, RTN4R, DGCR6L, ZNF74, SCARF2, KLHL22, PCQAP, PIK4CA, SERPIND1, SNAP29, CRKL, AIFL, LZTR1, THAP7, MGC16703, P2RXL1, SLC7A4, LOC400891, FLJ42953, HIC2, LOC220686, LOC375133, UBE2L3, LOC150223, FLJ36046, SDF2L1, PPIL2, YPEL1, MAPK1, PPM1F,

TOP3B, VPREB1

V_0816_LC20342_Sharp et al. (2005), V_0817_LC20342_Sharp et al. (2005), V_2262_LC20342_Locke et al. (2006), V_2263_LC20342_Locke et al. (2006), V_2264_LC20342_Locke et al. (2006), V_2265_LC20342_Locke et al. (2006), V_2266_LC20342_Locke et al. (2006), V_5169_LC20342_Wong et al. (2007), V_5170_LC20342_Wong et al. (2007), V_5171_LC20342_Wong et al. (2007), V_5172_LC20342_Wong et al. (2007), V_5173_LC20342_Wong et al. (2007),

V_5174_LC20342_Wong et al. (2007) q11.21-q11.2222 27342890 28159844 RP11-436H2 RP11-612D3 6 0.816954 0.282782774 CHEK2, HSC20, FLJ33814, XBP1, HS747E2A, KREMEN1, EMID1, RHBDD3, EWSR1, GAS2L1, RRP22, AP1B1 q12.1-q12.2

22 29852756 34826013 RP11-634P6 RP11-651L13 47 4.973257 0.352114947PIB5PA, PLA2G3, RNF185, LIMK2, MGC17330, ZNF278, DRG1, EIF4ENIF1, SFI1, PISD, MGC50372, DEPDC5, YWHAH, LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28, BPIL2, FBXO7, SYN3, TIMP3, LARGE, RAXLX, HMG2L1, TOM1, HMOX1, MCM5, RASD2, MB,

LOC284912, APOL6, APOL5, RBM9 V_0236_LC20439_Iafrate et al. (2004), V_0237_LC20476_Iafrate et al. (2004), V_5181_LC20466_Wong et al. (2007), V_5182_LC20466_Wong et al. (2007) q12.2-q12.3

22 34956796 48203390 RP11-105I18 RP11-314N5 121 13.246594 0.703528438

GCAT, GALR3, LOC129138, EIF3S6IP, MICAL-L1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF, C22orf5, CSNK1E, KCNJ4, KDELR3, DDX17, DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7, PDGFB, RPL3, SYNGR1, MAP3K7IP1, MGAT3, FLJ20232, ATF4, RPS19BP1, CACNA1I, FLJ25421, GRAP2, FAM83F, TNRC6B, ADSL, RUTBC3, MKL1, MCHR1, SLC25A17, ST13, LOC63929, DNAJB7, RBX1, EP300, L3MBTL2, RANGAP1, ZC3H7B, TEF, TOB2, PHF5A, ACO2, POLR3H, CSDC2, PMM1, D15Wsu75e, XRCC6, NHP2L1, FLJ23584, MGC40042, FLJ22349, SREBF2, TNFRSF13C, C22orf18, MGC26816, NAGA, FAM109B, LOC91689, NDUFA6, CYP2D6, TCF20, NFAM1, SERHL, CGI-96, SERHL2, POLDIP3, CYB5R3, A4GALT, ARFGAP3, PACSIN2, TTLL1, BIK, MCAT, BZRP, TTLL12, SCUBE1, MPPED1, FLJ23588, SULT4A1, PNPLA5, ADPN, SAMM50, PARVB, PARVG, LDOC1L, LOC388910, PRR5, LOC553158, ARHGAP8, PHF21B, NUP50, C22orf9, UPK3A, C22orf8, SMC1L2, RIBC2, FBLN1, ATXN10,

WNT7B, FLJ10945, PPARA, LOC150383, PKDREJ, FLJ20699, GTSE1, TRMU, CELSR1, DIP, CERK, TBC1D22A, FLJ46257, LOC388915, FAM19A5

V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5183_LC20479_Wong et al. (2007), V_5184_LC20492_Wong et al. (2007), V_5185_LC20500_Wong et al. (2007), V_5186_LC20500_Wong et al. (2007), V_5187_LC20514_Wong et al. (2007), V_5188_LC20524_Wong et al. (2007),

V_5189_LC20524_Wong et al. (2007), V_5190_LC20580_Wong et al. (2007), V_5191_LC20603_Wong et al. (2007) q12.3-q13.3322 49168746 49518700 RP11-676E13 RP11-423E19 3 0.349954 0.307091393 SAPS2, SBF1, ADM2, MIOX, BC002942, hCAP-H2, SCO2, ECGF1, LOC440836, KLHDC7B, CPT1B, CHKB, MAPK8IP2, ARSA, SHANK3 V_0239_LC20651_Iafrate et al. (2004), V_5192_LC20651_Wong et al. (2007), V_5193_LC20651_Wong et al. (2007) q13.33

23 550000 47743831 RP13-76L22 RP11-751K24 423 47.193831 0.975892562

EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6,

MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, NDUFB11, RBM10, UBE1, PCTK1, USP11, ZNF157, ZNF41, ARAF, SYN1, TIMP1, CFP, ELK1, UXT, ZNF81,

ZNF21

V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0362_LC20686_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005), V_0822_LC20844_Sharp et al. (2005), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006),

V_2276_LC20844_Locke et al. (2006) p22.33-p11.23

23 48172092 52403462 RP11-107A19 RP11-485B17 29 4.23137 0.604662565SLC38A5, FTSJ1, PORCN, EBP, TBC1D25, RBM3, WDR13, WAS, SUV39H1, LOC392465, GATA1, HDAC6, ERAS, PCSK1N, TIMM17B, PQBP1, SLC35A2, PIM2, OTUD5, KCND1, GRIPAP1, TFE3, JM11, PRAF2, WDR45, GPKOW, FLJ21687, PLP2, LMO6, SYP, CACNA1F, CCDC22, FOXP3,

PPP1R3F, GAGE8, GAGE4, GAGE5, GAGE7B, GAGE7, GAGE2, GAGE6, GAGE1, PAGE1, PAGE4, CLCN5, AKAP4, CCNB3, DGKK, SHROOM4, BMP15, NUDT10, LOC340602, NUDT11, GSPT2, MAGED1, MAGED4, LOC401589, XAGE2, LOC653216 V_0824_LC20844_Sharp et al. (2005), V_2278_LC20844_Locke et al. (2006) p11.23-p11.22

23 52882770 66527171 CTD-2009K1 RP11-662B5 105 13.644401 0.90137179XAGE3, TMEM29, GPR173, TSPYL2, SMCX, IQSEC2, SMC1L1, RIBC1, HADH2, HUWE1, PHF8, CXorf17, WNK3, RP1-112K5.2, FGD1, GNL3L, ITIH5L, MAGED2, TRO, PFKFB1, APEX2, ALAS2, PAGE2B, PAGE2, FAM104B, PAGE5, PAGE3, MAGEH1, USP51, FOXR2, RRAGB, KLF8, UBQLN2,

SPIN3, SPIN-2, SPIN2, FLJ31204, ZXDB, ZXDA, LOC139886, ARHGEF9, FAM123B, ASB12, MTMR8, KIAA1166, ZC3H12B, LAS1L, MSN, VSIG4, HEPH, EDA2R V_0243_LC20866_Iafrate et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_2279_LC20881_Locke et al. (2006) p11.22-q1223 67637584 68661829 RP11-567A13 RP11-54P15 7 1.024245 0.412978752 YIPF6, STARD8, EFNB1, PJA1, TMEM28 q12-q13.123 70612592 71120289 RP13-545A22 RP13-511B10 5 0.507697 0.248640674 OGT, ACRC, CXCR3 q13.1

23 151445168 153772342 RP13-586H7 RP11-524G17 29 2.327174 0.374200795

GABRQ, MAGEA6, MAGEA12, CSAG1, MAGEA2, MAGEA2B, CSAG3A, CSAG2, MAGEA3, CETN2, NSDHL, PNMA5, PNMA3, PNMA6A, MAGEA1, ZNF275, TREX2, UIP1, BGN, ATP2B3, FAM58A, DUSP9, PNCK, SLC6A8, BCAP31, ABCD1, PLXNB3, STK23, IDH3G, SSR4, PDZD4, L1CAM, LCAP, AVPR2, ARHGAP4, ARD1A, RENBP, HCFC1, TMEM187, IRAK1, MECP2, OPN1LW, OPN1MW2, OPN1MW, CXorf2, TKTL1, FLNA, EMD, RPL10, DNASE1L1, TAZ, ATP6AP1, GDI1, FAM50A, PLXNA3, LAGE3, UBL4A, SLC10A3, FAM3A, G6PD, IKBKG, CTAG1A, CTAG1B, CTAG2, GAB3, DKC1,

MPP1, F8 q28

Gains

SMOV-2

24 482246 2826406 CTD-2584M8 RP11-352O4 12 2.34416 0.296078035 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1 p11.32-p11.3124 10553937 15509462 RP11-108I14 RP11-568F18 47 4.955525 0.337382788 USP9Y, DDX3Y, UTY, TMSB4Y, VCY, VCY1B, NLGN4Y V_0830_LC21244_Sharp et al. (2005) p11.2-q11.221

chrom start end start.bac end.bac BACs length MB minM genes mirnas acgh.cnvs cytobands1 6039489 6743912 RP11-668O13 RP11-36K18 8 0.704423 -0.495394756 KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11 V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007) p36.311 7747096 8276744 RP11-620C9 RP11-65A16 4 0.529648 -0.538939317 CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1 V_4204_LC0118_Wong et al. (2007) p36.231 8622026 10203736 RP11-792B5 RP11-428A21 15 1.58171 -0.537368357 RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B V_0003_LC0126_Iafrate et al. (2004) p36.23-p36.221 58899129 60980338 RP11-454N17 RP11-25A21 19 2.081209 -0.357292873 JUN, FLJ10986, HOOK1, CYP2J2, C1orf87 V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007) p32.1-p31.31 63762320 64912971 RP11-384L12 RP11-93F23 8 1.150651 -0.302092006 KIAA1799, PGM1, ROR1, UBE2U, CACHD1 p31.31 65572509 67138714 CTD-2008P8 RP11-381L12 17 1.566205 -0.265645641 DNAJC6, LEPR, LEPROT, PDE4B, SGIP1, TCTEX1D1, INSL5, WDR78 p31.3

1 67649112 77718765 RP11-55O4 RP11-754F4 101 10.069653 -0.627849653 SERBP1, GADD45A, GNG12, DIRAS3, GPR177, RPE65, DEPDC1, LRRC7, LRRC40, SFRS11, ANKRD13C, HHLA3, CTH, PTGER3, ZNF265, NEGR1, FPGT, TNNI3K, C1orf173, CRYZ, C1orf171, LHX8, SLC44A5, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3, ST6GALNAC5, PIGK, AK5 V_4229_LC0493_Wong et al. (2007), V_4230_LC0507_Wong et al. (2007) p31.3-p31.1

1 78563523 86272952 RP11-160E18 RP11-771P4 75 7.709429 -0.460480907 PTGFR, IFI44L, IFI44, LPHN2, TTLL7, PRKACB, SAMD13, DNASE2B, BXDC5, GNG5, SPATA1, CTBS, SSX2IP, EDG7, MCOLN2, MCOLN3, WDR63, C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1 V_0010_LC0552_Iafrate et al. (2004), V_4231_LC0527_Wong et al. (2007), V_4232_LC0542_Wong et al. (2007), V_4233_LC0552_Wong et al. (2007) p31.1-p22.31 87788888 89115101 RP11-137A6 RP11-44G21 15 1.326213 -0.375149072 PKN2, GTF2B p22.3-p22.22 640765 4635154 RP11-186N17 RP11-168C14 34 3.994389 -0.431522195 TMEM18, SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC p25.3-p25.22 9078624 10304432 RP11-90A1 RP11-648N8 12 1.225808 -0.344373147 DDEF2, ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B, GRHL1, KLF11, CYS1, RRM2, FLJ25102 p25.12 10640916 11754223 RP11-124A15 RP11-641J22 7 1.113307 -0.384566862 NOL10, ATP6V1C2, PDIA6, KCNF1, FLJ25143, PQLC3, ROCK2, E2F6, GREB1, NTSR2 p25.12 13389284 14017116 RP11-5N22 RP11-302F7 4 0.627832 -0.306996804 p24.32 21864664 22636153 RP11-789K7 RP11-715E18 5 0.771489 -0.343387902 p24.1

2 23828557 28304543 RP11-606O24 RP11-474I22 40 4.475986 -0.447069854

UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4, FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI, MGC16372, OTOF, CIB4, KCNK3, C2orf18, CENPA, DPYSL5, MAPRE3, FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54, UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L,

SLC4A1AP, MRPL33, RBKS, BRE p24.1-p23.2

2 31653237 36599283 RP11-15P15 RP13-593C22 51 4.946046 -0.627615357 SRD5A2, C2orf4, LOC84661, SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A, CRIM1V_0018_LC1749_Iafrate et al. (2004), V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007),


2 36623924 42331731 RP11-484P1 RP11-84G17 52 5.707807 -0.714961658 CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC34824, ARL6IP2, HNRPLL, GALM, SFRS7, GEMIN6, DHX57, SOS1, CDKL4, MAP4K3, MGC33926, THUMPD2, SLC8A1, LOC91461, EML4 V_4282_LC1766_Wong et al. (2007) p22.2-p213 36784 3259660 RP11-359E9 RP11-640K12 27 3.222876 -0.385594782 CHL1, CNTN6, CNTN4, IL5RA, TRNT1, CRBN V_0359_LC2871_Shaw-Smith et al. (2004) p26.3

3 16938767 36852834 RP11-15O3 RP11-640L9 215 19.914067 -0.443980156PLCL2, TBC1D5, SATB1, KCNH8, EFHB, RAB5A, C3orf48, PCAF, SGOL1, ZNF659, UBE2E2, UBE2E1, NKIRAS1, RPL15, NR1D2, THRB, RARB, TOP2B, NGLY1, OXSM, LRRC3B, NEK10, SLC4A7, EOMES, MGC61571, AZI2, ZCWPW2, RBMS3, TGFBR2, GADL1, STT3B, OSBPL10, GPD1L,

CMTM8, CMTM7, CMTM6, DYNC1LI1, CNOT10, LIN41, CCR4, GLB1, FLJ45032, CRTAP, FBXL2, UBP1, CLASP2, PDCD6IP, ARPP-21, STAC V_4332_LC3007_Wong et al. (2007) p24.3-p22.2

3 58788665 119968538 RP11-19B12 RP11-722H21 536 61.179873 -0.917096187

FLJ42117, FHIT, PTPRG, C3orf14, ZNF312, CADPS, SYNPR, FLJ44379, THOC7, ATXN7, PSMD6, PRICKLE2, ADAMTS9, MAGI1, SLC25A26, LRIG1, KBTBD8, SUCLG2, FAM19A1, FAM19A4, C3orf64, TMF1, UBE1C, ARL6IP5, LMOD3, MITF, LOC401072, FOXP1, EIF4E3, GPR27, PROK2, RYBP, SHQ1, LOC727936, PPP4R2, FLJ10213, PDZRN3, CNTN3, ROBO2, ROBO1, GBE1, IGSF4D, VGLL3, CHMP2B, POU1F1, HTR1F, CGGBP1, ZNF654, C3orf38, EPHA3, PROS1, ARL13B, STX19, DHFRL1, NSUN3, EPHA6, ARL6, DKFZp667G211, MINA, OR5AC2, OR5H1, OR5H14, OR5H15, OR5H6, OR5H2, OR5K4, OR5K3, OR5K1, OR5K2, CLDND1, GPR15, CPOX, ST3GAL6, DCBLD2, COL8A1, FLJ44076, C3orf26, DOC1, TBC1D23, NIT2, TOMM70A, TMEM45A, GPR128, TFG, ABI3BP, IMPG2, SENP7, RG9MTD1, PCNP, ZBTB11, RPL24, LRRIQ2, FAM55C, NFKBIZ, ZPLD1, ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, KIAA1524, DZIP3, RETNLB, TRAT1, GUCA1C, MORC1, DPPA2, DPPA4, PVRL3, CD96, ZBED2, PLCXD2, PHLDB2, ABHD10, TAGLN3, TMPRSS7, C3orf52, GCET2, SLC9A10, CD200, BTLA, ATG3, SLC35A5, URB, CD200R2, CD200R1,

GTPBP8, C3orf17, BOC, WDR52, CCDC52, SIDT1, KIAA2018, MAK3, ATP6V1A, GRAMD1C, ZDHHC23, KIAA1407, QTRTD1, DRD3, ZNF80, VSIG9, ZBTB20, GAP43, LSAMP

V_0695_LC3383_Sharp et al. (2005), V_2061_LC3320_Locke et al. (2006), V_4340_LC3314_Wong et al. (2007), V_4341_LC3320_Wong et al. (2007), V_4342_LC3338_Wong et al. (2007), V_4343_LC3365_Wong et al. (2007), V_4344_LC3397_Wong et al. (2007), V_4345_LC3405_Wong et al. (2007), V_4346_LC3406_Wong et al. (2007), V_4347_LC3406_Wong et al. (2007), V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007),

V_4350_LC3509_Wong et al. (2007), V_4351_LC3524_Wong et al. (2007) p14.2-q13.323 122796363 123901040 RP11-713E16 RP11-757I12 15 1.104677 -0.311760449 FBXO40, HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR, CSTA, CCDC58, C3orf28, WDR5B, KPNA1, PARP9, DTX3L, PARP15, PARP14 q13.33-q21.13 131461246 135020184 RP11-129J11 RP11-119I11 27 3.558938 -0.328258805 FLJ35880, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBE1DC1, NPHP3, TMEM108, BFSP2, CDV3, TOPBP1, TF, SRPRB V_4353_LC3617_Wong et al. (2007), V_4354_LC3619_Wong et al. (2007) q21.3-q22.13 141408457 142941777 RP11-343B15 RP11-607F20 21 1.53332 -0.412914565 CLSTN2, TRIM42, SLC25A36, SPSB4, ACPL2, ZBTB38, RASA2, RNF7 V_0036_LC3666_Iafrate et al. (2004) q23

3 143788461 173521342 RP11-53B4 RP11-609G4 292 29.732881 -1.343410021

PLS1, TRPC1, PCOLCE2, PAQR9, SR140, CHST2, SLC9A9, C3orf58, PLOD2, PLSCR4, PLSCR2, PLSCR1, ZIC4, ZIC1, AGTR1, CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2, TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B, SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN,

RARRES1, MFSD1, IQCJ, SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L, B3GALT3, NMD3, C3orf57, LOC131149, SI, SLITRK3, BCHE, FLJ23049, SERPINI2, WDR49, PDCD10, SERPINI1, GOLPH4, EVI1, MDS1, ARPM1, MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B

V_0037_LC3745_Iafrate et al. (2004), V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_4355_LC3723_Wong et al. (2007), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007), V_4359_LC3802_Wong et al. (2007),

V_4360_LC3802_Wong et al. (2007), V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007) q23-q26.31

4 9591612 37236400 RP11-522J14 RP11-260B15 230 27.644788 -2.341710798SLC2A9, WDR1, KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL, SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3,

DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721, PCDH7, CENTD1

V_0045_LC4542_Iafrate et al. (2004), V_0130_LC4464_Iafrate et al. (2004), V_2070_LC4236_Locke et al. (2006), V_4379_LC4291_Wong et al. (2007), V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007), V_4384_LC4441_Wong et al. (2007), V_4385_LC4531_Wong et al. (2007), V_4386_LC4542_Wong et al. (2007), V_4387_LC4546_Wong et al. (2007),

V_4388_LC4555_Wong et al. (2007), V_4389_LC4569_Wong et al. (2007) p16.1-p144 43753712 48770462 RP11-151E13 RP11-731B21 39 5.01675 -0.48902607 KCTD8, YIPF7, GUF1, GNPDA2, GABRG1, GABRA2, COX7B2, GABRA4, GABRB1, COMMD8, ATP10D, CORIN, NFXL1, CNGA1, NPAL1, TXK, TEC, SLC10A4, ZAR1, FRYL, OCIAD1, OCIAD2, FLJ21511 V_0700_LC4677_Sharp et al. (2005), V_4392_LC4693_Wong et al. (2007), V_4393_LC4704_Wong et al. (2007) p13-p114 52478915 53766828 RP11-61F5 RP11-543F15 8 1.287913 -0.649456129 LOC339977, SGCB, SPATA18, USP46, FLJ12684, RASL11B, SCFD2 V_4395_LC4720_Wong et al. (2007), V_4396_LC4722_Wong et al. (2007), V_4397_LC4723_Wong et al. (2007) q124 61118619 64817483 RP11-703E8 RP11-47B6 28 3.698864 -0.504897079 LPHN3 q13.14 65949470 67548018 RP11-641A24 RP11-234L24 8 1.598548 -0.41236766 EPHA5 q13.1-q13.24 68459601 70628402 RP11-35D5 RP11-777E22 15 2.168801 -0.828872122 TMPRSS11A, TMPRSS11F, CHR415SYT, TMPRSS11B, YTHDC1, UGT2B17, TMPRSS11E, UGT2B15, UGT2B10, UGT2A3, UGT2B7, UGT2B11, UGT2B28, UGT2B4, UGT2A1, SULT1B1 V_0701_LC4909_Sharp et al. (2005), V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006) q13.2-q13.34 74439361 75951028 RP11-647I12 RP11-788F14 10 1.511667 -0.348621084 ALB, AFP, AFM, RASSF6, IL8, CXCL6, PF4V1, CXCL1, PF4, PPBP, CXCL5, CXCL3, CXCL2, MTHFD2L, EPGN, EREG, AREG, BTC q13.3

4 80167832 152115129 RP11-700B17 RP11-317O22 534 71.947297 -0.903582258

ARD1B, GK2, ANTXR2, PRDM8, FGF5, MGC35043, BMP3, PRKG2, RASGEF1B, HNRPD, HNRPDL, ENOPH1, FLJ12993, SCD5, SEC31A, SEC31L1, THAP9, DKFZp686L181, COPS4, PLAC8, COQ2, HPSE, HEL308, MRPS18C, CCDC98, HMFN0839, NKX6-1, CDS1, WDFY3, ARHGAP24, MAPK10, PTPN13, SLC10A6, C4orf36, AFF1, KLHL8, HSD17B13, HSD17B11, NUDT9, SPARCL1, DSPP, DMP1, IBSP, MEPE, SPP1, PKD2, ABCG2, PPM1K, HERC6, HERC5, PIGY, HERC3, NAP1L5, FAM13A1, TIGD2, GRIN3, SNCA, MMRN1, MGC48628, GRID2, ATOH1, SMARCAD1, PGDS,

PDLIM5, BMPR1B, UNC5C, PDHA2, MGC46496, RAP1GDS1, TSPAN5, EIF4E, METAP1, ADH5, ADH4, ADH6, ADH1A, ADH1B, ADH1C, ADH7, C4orf17, RG9MTD2, MTTP, DAPP1, MAP2K1IP1, DNAJB14, H2AFZ, DDIT4L, EMCN, PPP3CA, BANK1, SLC39A8, NFKB1, MANBA, UBE2D3, LOC493856, LOC150159, LOC133308, BDH2, CENPE, TACR3, CXXC4, KIAA1546, PPA2, FLJ20184, INTS12, FLJ13273, NPNT, MGC16169, SCYE1, DKK2, PAPSS1, SGMS2, CYP2U1, HADHSC, LEF1, RPL34, DC2, AGXT2L1, COL25A1, SEC24B, FLJ20647, CASP6, PLA2G12A, CFI, NOLA1,

RRH, FLJ44691, EGF, ELOVL6, ENPEP, PITX2, FLJ39370, C4orf16, TIFA, ALPK1, NEUROG2, LOC91431, FLJ11331, HDCMA18P, ANK2, CAMK2D, ARSJ, UGT8, NDST4, TRAM1L1, NDST3, PRSS12, KIAA1627, SEC24D, SYNPO2, MYOZ2, USP53, LOC401152, FABP2, PDE5A, MAD2L1, PRDM5, FLJ23191, TNIP3, GPR103, ANXA5, TMEM155, EXOSC9, CCNA2, BBS7, TRPC3, Tenr, IL2, IL21, FLJ35630, FGF2, NUDT6, SPATA5, SPRY1, ANKR

V_0047_LC5166_Iafrate et al. (2004), V_0048_LC5301_Iafrate et al. (2004), V_0049_LC5396_Iafrate et al. (2004), V_0050_LC5522_Iafrate et al. (2004), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4402_LC5044_Wong et al. (2007), V_4405_LC5085_Wong et al. (2007), V_4406_LC5192_Wong et al. (2007), V_4407_LC5203_Wong et al. (2007), V_4408_LC5273_Wong et al. (2007), V_4409_LC5332_Wong et al. (2007), V_4411_LC5470_Wong et al. (2007), V_4412_LC5587_Wong et al. (2007), V_4413_LC5596_Wong et al. (2007), V_4414_LC5605_Wong et al. (2007), V_4415_LC5607_Wong et al. (2007), V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007),

V_4418_LC5696_Wong et al. (2007), V_4419_LC5731_Wong et al. (2007), V_4587_LC5465_Wong et al. (2007) q21.21-q31.34 155614088 159461944 RP11-111A7 RP11-110A19 32 3.847856 -0.594118272 PLRG1, FGB, FGA, FGG, LRAT, MGC27016, NPY2R, ASAP, GUCY1A3, GUCY1B3, ACCN5, TDO2, CTSO, PDGFC, GLRB, GRIA2, C4orf18, TMEM144 q32.1

4 160104008 182988298 RP11-620C21 RP11-81L10 179 22.88429 -1.209497966FLJ25371, FSTL5, LOC92345, NPY1R, NPY5R, TKTL2, FLJ11184, ANP32C, TRIM61, FLJ31659, TRIM60, FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1,

HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4, ASB5, SPCS3, VEGFC, NEIL3, AGAV_0052_LC5911_Iafrate et al. (2004), V_0053_LC5929_Iafrate et al. (2004), V_0054_LC6039_Iafrate et al. (2004), V_4420_LC5892_Wong et al. (2007),

V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007) q32.1-q35.15 10820282 16968719 RP11-647O21 RP11-90B23 87 6.148437 -0.654433546 CTNND2, DNAH5, TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10 V_2082_LC6572_Locke et al. (2006) p15.2-p15.1

5 17378802 20682262 RP11-393P10 RP11-527C4 26 3.30346 -0.466204821 CDH18V_0061_LC6634_Iafrate et al. (2004), V_0708_LC6659_Sharp et al. (2005), V_4431_LC6634_Wong et al. (2007), V_4432_LC6634_Wong et al. (2007),

V_4433_LC6655_Wong et al. (2007), V_4434_LC6659_Wong et al. (2007), V_5051_LC6639_Wong et al. (2007) p15.1-p14.35 21455848 31472691 RP11-524H13 RP11-705N10 110 10.016843 -0.515076416 CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_4436_LC6669_Wong et al. (2007) p14.3-p13.35 37187978 42863532 RP11-109E20 RP11-237B16 66 5.675554 -0.463700659 FLJ13231, NUP155, WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636, FBXO4, GHR, SEPP1 V_0063_LC6852_Iafrate et al. (2004), V_4439_LC6842_Wong et al. (2007) p13.2-p125 43987187 45985067 RP11-813J10 CTD-2220G19 18 1.99788 -0.406093064 FGF10, MRPS30, LOC441070, HCN1 V_4441_LC6869_Wong et al. (2007), V_4442_LC6871_Wong et al. (2007) p12-p115 50057764 50290883 CTD-2380H16 RP11-710D10 5 0.233119 -0.352989986 PARP8 q11.16 63487134 70445522 CTD-2150J7 RP11-810I22 69 6.958388 -0.410435792 GLULD1, PTP4A1, PHF3, LOC643136, EGFL11, BAI3, LMBRD1 V_0082_LC8431_Iafrate et al. (2004), V_0083_LC8439_Iafrate et al. (2004) q11.2-q136 91330409 103711907 RP11-501P2 RP11-181L11 109 12.381498 -0.487551485 MAP3K7, EPHA7, MANEA, FUT9, KIAA0776, FHL5, GPR63, C6orf66, KLHL32, C6orf167, POU3F2, FBXL4, C6orf168, COQ3, C6orf111, USP45, CCNC, PRDM13, MCHR2, SIM1, ASCC3, GRIK2 V_4501_LC8583_Wong et al. (2007), V_4502_LC8592_Wong et al. (2007) q15-q16.3

6 112672771 130030405 RP11-262M7 RP11-112F10 162 17.357634 -0.570380878LAMA4, LOC442247, MARCKS, FLJ34503, HDAC2, HS3ST5, FRK, NT5DC1, COL10A1, TSPYL4, TSPYL1, DSE, LOC441168, C6orf188, C6orf78, RWDD1, RSHL3, C6orf113, KPNA5, GPRC6A, RFXDC1, VGLL2, ROS1, DCBLD1, GOPC, C6orf68, SLC35F1, C6orf204, PLN, ASF1A, MCMDC1,

C6orf60, MAN1A1, C6orf170, GJA1, HSF2, SERINC1, PKIB, FABP7, SMPDL3A, C6orf213, TRDN, TCBA1, IBRDC1, TPD52L1, HDDC2, HEY2, NCOA7, HINT3, C6orf75, C6orf173, RSPO3, RNF146, ECHDC1, KIAA0408, C6orf174, LOC389429, C6orf190, PTPRK, LAMA2, ARHGAP18 V_0090_LC8741_Iafrate et al. (2004), V_0091_LC8757_Iafrate et al. (2004), V_4506_LC8686_Wong et al. (2007) q21-q22.336 131562808 133210709 RP11-693B18 RP11-316K22 16 1.647901 -0.439956825 AKAP7, ARG1, CRSP3, ENPP3, OR2A4, ENPP1, CTGF, MOXD1, STX7, TAAR9, TAAR8, TAAR6, TAAR5, TAAR2, TAAR1, VNN1, VNN3, VNN2, C6orf192, RPS12 V_4508_LC8791_Wong et al. (2007) q23.2

9 236835 32918900 RP11-393D13 RP11-626N2 306 32.682065 -0.894923509

DOCK8, ANKRD15, DMRT1, DMRT3, DMRT2, SMARCA2, VLDLR, KCNV2, KIAA0020, RFX3, GLIS3, SLC1A1, C9orf68, PPAPDC2, CDC37L1, AK3, RCL1, JAK2, INSL6, INSL4, RLN2, RLN1, C9orf46, CD274, PDCD1LG2, KIAA1432, KIAA1815, MLANA, KIAA2026, RANBP6, C9orf26, TPD52L3, UHRF2, GLDC, JMJD2C, C9orf123, PTPRD, TYRP1, C9orf150, MPDZ, NFIB, ZDHHC21, CER1, FREM1, C9orf52, SNAPC3, PSIP1, C9orf93, BNC2, LOC648570, C9orf39, SH3GL2, ADAMTSL1, C9orf94, C9orf138, RRAGA, FAM29A, ADFP, DENND4C, RPS6, ASAH3L, SLC24A2, MLLT3, KIAA1797,PTPLAD2, IFNB1, IFNW1, IFNA21, IFNA4, IFNA14, IFNA7, IFNA10, IFNA16, IFNA17, IFNA5, KLHL9, IFNA6, IFNA13, IFNA2, IFNA8, IFNA1, IFNE1, MTAP, CDKN2A, CDKN2B, DMRTA1, ELAVL2, TUSC1, C9orf82, PLAA, IFT74, LRRC19, TEK, C9orf11, MOBKL2B, IFNK, C9orf72, LRRN6C, ACO1,

DDX58, TOPORS, NDUFB6, TAF1L, LOC401498V_0125_LC11024_Iafrate et al. (2004), V_0126_LC11024_Iafrate et al. (2004), V_0127_LC11147_Iafrate et al. (2004), V_0128_LC11164_Iafrate et al. (2004),


9 35715248 38427288 RP11-621D23 RP11-113O24 24 2.71204 -0.745486224TLN1, CREB3, GBA2, KIAA0258, PC-3, NPR2, SPAG8, HINT2, C9orf128, C9orf127, OR13J1, LOC646962, OR2S2, RECK, C9orf19, CCIN, CLTA, GNE, RNF38, MELK, PAX5, ZCCHC7, GRHPR, ZBTB5, POLR1E, FBXO10, FRMPD1, RG9MTD3, EXOSC3, WDR32, MCART1, SHB, ALDH1B1,

IGFBPL1 V_2127_LC11326_Locke et al. (2006) p13.3-p13.1

10 44601439 69286616 RP11-374O5 RP11-711I8 247 24.685177 -0.485204067

RASSF4, C10orf10, C10orf25, ZNF22, OR13A1, ALOX5, ANUBL1, FAM21C, CTGLF1, LOC594834, PDZK5B, SYT15, KIAA0514, PPYR1, ANXA8, LOC653107, ZNF488, RBP3, GDF2, GDF10, PTPN20A, PTPN20B, FRMPD2, MAPK8, ARHGAP22, LRRC18, C10orf72, C10orf71, LOC644168, ERCC6, PGBD3, SLC18A3, CHAT, C10orf53, OGDHL, PARG, CTGLF5, CTGLF4, MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2, PCDH15, ZWINT, IPMK, C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6,

ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2, NRBF2, JMJD1C, REEP3, CTNNA3, LRRTM3, DNAJC12

V_0136_LC12274_Iafrate et al. (2004), V_0764_LC12274_Sharp et al. (2005), V_2153_LC12274_Locke et al. (2006), V_2154_LC12274_Locke et al. (2006), V_2155_LC12288_Locke et al. (2006), V_2156_LC12305_Locke et al. (2006), V_4681_LC12274_Wong et al. (2007), V_4682_LC12274_Wong et al. (2007), V_4683_LC12274_Wong et al. (2007), V_4684_LC12274_Wong et al. (2007), V_4685_LC12274_Wong et al. (2007), V_4686_LC12298_Wong et al. (2007), V_4687_LC12274_Wong et al. (2007), V_4688_LC12274_Wong et al. (2007), V_4689_LC12274_Wong et al. (2007), V_4690_LC12274_Wong et al. (2007), V_4691_LC12288_Wong et al. (2007), V_4692_LC12288_Wong et al. (2007), V_4693_LC12288_Wong et al. (2007), V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007), V_4696_LC12350_Wong et al. (2007), V_4697_LC12385_Wong et al. (2007), V_4698_LC12387_Wong et al. (2007),

V_4699_LC12389_Wong et al. (2007), V_4700_LC12395_Wong et al. (2007), V_4701_LC12398_Wong et al. (2007) q11.21-q21.310 76902035 78326019 RP11-7C23 RP11-791H19 14 1.423984 -0.253590455 C10orf11, KCNMA1 V_4703_LC12451_Wong et al. (2007) q22.2-q22.310 82390326 87691231 RP11-175M21 RP11-589G23 46 5.300905 -0.388860517 SH2D4B, NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1 V_0762_LC12488_Sharp et al. (2005), V_2161_LC12488_Locke et al. (2006), V_4705_LC12506_Wong et al. (2007) q23.110 88946983 92783562 RP11-322M19 RP11-700O24 33 3.836579 -0.307437939 MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA, IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1 V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007) q23.2-q23.31

10 105869848 118195081 RP11-795D7 RP11-642J2 112 12.325233 -0.610582608C10orf78, C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SORCS3, SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1, DUSP5, CSPG6, PDCD4, SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1, C10orf118, TDRD1,

VWA2, KIAA1914, ABLIM1, KIAA1600, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3 V_0766_LC12664_Sharp et al. (2005), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007) q25.1-q25.315 25725219 26111239 RP11-268O3 RP11-142A11 5 0.38602 -0.462577152 OCA2, HERC2 q13.1

15 26590572 62069042 RP11-276P1 RP11-125G19 312 35.47847 -1.676561706

LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C,

GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76, FRMD5, CASC4, CTDSPL2, EIF3S1,

KIAA1840, B2M, RNF36, C15orf43, SORD, DUOX2, DUOXA2, NIP, DUOX1, SHF, SLC28A2, GATM, SPATA5L1, C15orf48, SLC30A4, C15orf21, PLDN, SQRDL, SEMA6D, SLC24A5, MYEF2, SLC12A1, DUT, FBN1, CEP152, SHC4, CRI1, KIAA0256, COPS2, GALK2, C15orf33, FGF7, DTWD1, ATP8B4, SLC27A2, HDC, GABPB2, USP8, USP50, TRPM7, SPPL2A, AP4E1, TNFAIP8L3, CYP19A1, GLDN, DMXL2, SCG3, LYSMD2, TMOD2, TMO

_ _ _ ( ), _ _ _ ( ), _ _ _ ( ), _ _ _ ( ),V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4882_LC16139_Wong et al. (2007), V_4883_LC16139_Wong et al. (2007), V_4884_LC16139_Wong et al. (2007), V_4885_LC16139_Wong et al. (2007), V_4886_LC16139_Wong et al. (2007), V_4887_LC16139_Wong et al. (2007), V_4888_LC16139_Wong et al. (2007), V_4889_LC16139_Wong et al. (2007), V_4890_LC16139_Wong et al. (2007), V_4891_LC16139_Wong et al. (2007), V_4892_LC16139_Wong et al. (2007),

V_4893_LC16139_Wong et al. (2007), V_4894_LC16139_Wong et al. (2007), V_4895 q13.1-q22.31

16 34123710 35069966 CTD-2234B6 RP11-712N19 8 0.946256 -0.316145331V_0196_LC16821_Iafrate et al. (2004), V_0197_LC16821_Iafrate et al. (2004), V_4951_LC16821_Wong et al. (2007), V_4952_LC16821_Wong et al. (2007),

V_4953_LC16821_Wong et al. (2007) p11.2-p11.116 45081598 50173498 RP11-180E11 RP11-89N7 51 5.0919 -0.814510324 FLJ43980, SHCBP1, VPS35, ORC6L, MLCK, LOC388272, GPT2, DNAJA2, NETO2, ITFG1, PHKB, ABCC12, ABCC11, LONPL, SIAH1, N4BP1, CBLN1, MGC33367, ZNF423, C16orf69, FLJ20718, PAPD5, ADCY7, BRD7, NKD1, SLIC1, CARD15, CYLD, SALL1 q11.2-q12.116 51459312 51928256 RP11-646A6 RP11-392H21 6 0.468944 -0.420900903 CHD9 V_0198_LC16863_Iafrate et al. (2004), V_4954_LC16857_Wong et al. (2007) q12.2

16 55886677 60950403 RP11-481F21 RP11-257I6 50 5.063726 -0.563794643 CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4, MGC10992, GPR114, GPR56, GPR97, CCDC135, KATNB1, KIFC3, CNGB1, TEPP, ZNF319, C16orf57, MMP15, GTL3, CSNK2A2, HSPC065, Klkbl4, FLJ13912, NDRG4, SETD6, CNOT1, FLJ10815, GOT2, CDH8 V_4958_LC16891_Wong et al. (2007), V_4959_LC16914_Wong et al. (2007), V_4960_LC16916_Wong et al. (2007) q13-q21

16 62164270 69494042 RP11-275D17 CTD-2410G13 70 7.329772 -0.815137489

CDH11, CDH5, TK2, CKLF, CMTM1, CMTM2, CMTM3, CMTM4, DYNC1LI2, APPBP1, CA7, PDP2, CDH16, RRAD, FAM96B, CES2, FLJ21736, FLJ37464, CBFB, LIN10, MGC4655, TRADD, FBXL8, HSF4, NOL3, LOC653319, LOC283849, E2F4, ELMO3, LRRC29, HSPC171, FHOD1, SLC9A5, PLEKHG4, LRRC36, CGI-38, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, FAM65A, CTCF, RLTPR, ACD, PARD6A, C16orf48, LOC388284, MGC11335, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF2, RCD-8, UNQ2446, PSKH1, CTRL, PSMB10, LCAT, SLC12A4, DPEP3, DPEP2, DDX28, DUS2L,

NFATC3, RBM35B, LYPLA3, SLC7A6, SLC7A6OS, PRMT7, SMPD3, ZFP90, CDH3, CDH1, FLJ12331, HAS3, CTF8, CIRH1A, SNTB2, VPS4A, COG8, PDF, NIP7, TMED6, TERF2, CYB5B, NFAT5, NQO1, PSMD8BP1, WWP2, PDPR, MGC34761, EXOSC6, AARS, DDX19B, DDX19A, ST3GAL2, FUK, COG4, SF3B3, MGC34647, LOC92154, VAC14

V_0797_LC16959_Sharp et al. (2005), V_2216_LC16959_Locke et al. (2006), V_4961_LC16934_Wong et al. (2007), V_4962_LC16939_Wong et al. (2007), V_4963_LC16959_Wong et al. (2007), V_4964_LC16959_Wong et al. (2007), V_4965_LC16963_Wong et al. (2007) q21-q22.2

16 69727407 79158537 RP11-204A24 RP11-41E5 125 9.43113 -1.040284684HYDIN, FLJ11171, CALB2, ZNF23, ZNF19, CHST4, TAT, MARVELD3, PHLPPL, AP1G1, LOC55565, KIAA0174, DHODH, HP, HPR, TXNL4B, DHX38, PMFBP1, ATBF1, PSMD7, LOC440348, LOC348174, LOC497190, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1, CTRB2, CTRB1,

BCAR1, CFDP1, LOC124491, CHST6, CHST5, FLJ22167, GABARAPL2, ADAT1, KARS, TERF2IP, CNTNAP4, MON1B, ADAMTS18, KIAA1576, CLEC3A, WWOX, MAF, DYNLRB2V_0678_LC16967_Sharp et al. (2005), V_2043_LC16967_Locke et al. (2006), V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007),

V_4968_LC17023_Wong et al. (2007) q22.2-q23.216 80745852 83379313 RP11-689K21 RP11-80H6 49 2.633461 -0.729503528 MPHOSPH6, CDH13, HSBP1, MLYCD, OSGIN1, EFCBP2, LOC146167, MBTPS1, HSDL1, LRRC50, TAF1C, LOC161931, KCNG4, WFDC1, ATP2C2, KIAA1609, COTL1, C16orf44, USP10 V_4969_LC17043_Wong et al. (2007) q23.3-q24.116 83873509 86092333 RP11-358D23 RP11-27E6 21 2.218824 -0.837759694 KIAA0182, Pfs2, MGC17624, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, MAP1LC3B, ZCCHC14 V_0199_LC17071_Iafrate et al. (2004), V_4970_LC17076_Wong et al. (2007), V_4971_LC17076_Wong et al. (2007) q24.1-q24.217 73048388 73688507 RP11-621A3 RP11-652L14 9 0.640119 -0.384635939 FLJ45079, TNRC6C, TMC6, TMC8, SYNGR2, TK1 q25.3

17 73999930 75033343 CTD-2280G9 RP11-105G17 10 1.033413 -0.623613027 DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713V_0212_LC17741_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_5034_LC17743_Wong et al. (2007),

V_5035_LC17750_Wong et al. (2007) q25.317 76165451 76402137 RP11-648F10 RP11-810D12 3 0.236686 -0.32125536 KIAA1303 q25.318 7429708 8213926 RP11-658L2 RP11-376P6 10 0.784218 -1.250158759 PTPRM p11.23

18 18925680 76098439 RP11-424I13 RP11-565D23 539 57.172759 -0.917070432

CABLES1, C18orf45, RIOK3, C18orf8, NPC1, ANKRD29, LAMA3, C18orf17, CABYR, OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, KCTD1, AQP4, CHST9, CDH2, DSC3, DSC2, DSC1, DSG1, DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, MEP1B, FAM59A, KLHL14, C18orf34, NOL4, DTNA, MAPRE2, ZNF397, ZNF271, ZNF24, ZNF396, C18orf37, GALNT1, C18orf21, P15RS, SLC39A6, STATIP1, MOCOS, FHOD3, C18orf10, KIAA1328, BRUNOL4, PIK3C3, RIT2, SYT4, SETBP1, SLC14A2, SLC14A1, CD33L3, KIAA1632, PSTPIP2, ATP5A1, CCDC5,

C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, TCEB3C, TCEB3B, HDHD2, IER3IP1, SMAD2, ZBTB7C, KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP,

BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7, CDH19, C18orf4, TXNDC10, C18orf14, DOK6, CD226, RTTN, SOCS6, CBLN2, NETO1, FBXO15, C18orf55, CYB5A, C18orf51, CNDP2, CNDP1, LOC400657, ZNF407, ZADH2, TSHZ1, LOC284274, ZNF236, MBP, GALR1, SALL3, ATP9B, NFATC1, CTDP1, KCNG2, PQLC1, TXNL4A, C1

V_0216_LC18106_Iafrate et al. (2004), V_0217_LC18181_Iafrate et al. (2004), V_0218_LC18301_Iafrate et al. (2004), V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007), V_5050_LC18106_Wong et al. (2007), V_5052_LC18144_Wong et al. (2007), V_5053_LC18156_Wong et al. (2007), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007),


22 21253838 21923344 RP11-281O23 RP11-61N10 6 0.669506 -0.443779577 GGTL4, RTDR1, GNAZ, RAB36, BCR

V_0818_LC20342_Sharp et al. (2005), V_2030_LC20342_Urban et al (2006), V_2031_LC20342_Urban et al (2006), V_2034_LC20342_Urban et al (2006), V_2267_LC20342_Locke et al. (2006), V_2268_LC20342_Locke et al. (2006), V_5175_LC20342_Wong et al. (2007), V_5176_LC20342_Wong et al. (2007),

V_5177_LC20342_Wong et al. (2007), V_5178_LC20342_Wong et al. (2007) q11.22-q11.2322 24545446 27334134 RP11-745E18 RP11-38L17 24 2.788688 -0.716153878 MYO18B, SEZ6L, ASPHD2, HPS4, LOC402055, TFIP11, TPST2, CRYBB1, CRYBA4, MN1, PITPNB V_2273_LC20404_Locke et al. (2006) q12.1

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 93460036 99743069 RP11-193O2 RP11-291M15 58 6.283033 0.824391172 CCDC18, DR1, FNBP1L, BCAR3, DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3, SLC44A3, CNN3, ALG14, TMEM56, RWDD3, PTBP2, DPYD, SNX7, PAP2D, LPPR4 V_0011_LC0611_Iafrate et al. (2004), V_4235_LC0611_Wong et al. (2007), V_4236_LC0622_Wong et al. (2007) p22.1-p21.21 101143553 102130846 RP11-376O20 RP11-585G23 10 0.987293 0.641409169 SLC30A7, DPH5, EDG1, OLFM3 p21.2-p21.11 106860717 108913817 RP11-478L17 RP11-428H14 22 2.0531 0.72208628 PRMT6, NTNG1, VAV3, SLC25A24, FAM102B V_2049_LC0673_Locke et al. (2006), V_4240_LC0671_Wong et al. (2007) p21.1-p13.3

1 109419966 113048296 RP11-695F11 RP11-676F24 33 3.62833 1.014256007TAF13, C1orf119, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5, SYPL2, ATXN7L2, CYB561D1, AMIGO1, GPR61, GNAI3, GNAT2, AMPD2, GSTM4, GSTM2, GSTM1, GSTM5, GSTM3, EPS8L3, CSF1, AHCYL1, FAM40A, ALX3, UBL4B, SLC6A17, KCNC4, RBM15, SLC16A4,

HBXIP, PROK1, KCNA10, KCNA2, KCNA3, CD53, C1orf103, TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C1orf88, OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A, C1orf183, DDX20, KCND3, CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC V_4241_LC0680_Wong et al. (2007), V_4242_LC0704_Wong et al. (2007) p13.3-p13.2

1 113831323 118804299 RP11-815O22 RP11-441H15 44 4.972976 1.000569273MAGI3, PHTF1, RSBN1, PTPN22, C1orf178, AP4B1, DCLRE1B, HIPK1, OLFML3, SYT6, TRIM33, BCAS2, DENND2C, AMPD1, NRAS, CSDE1, SIKE, SYCP1, TSHB, TSPAN2, NGFB, VANGL1, CASQ2, NHLH2, SLC22A15, C1orf161, ATP1A1, CD58, IGSF3, CD2, PTGFRN, IGSF2, TTF2, TRIM45,

VTCN1, MAN1A2, FAM46C, GDAP2, WDR3, SPAG17 V_4243_LC0729_Wong et al. (2007) p13.2-p121 227531710 228142499 RP11-315I22 RP11-297G21 3 0.610789 0.811202166 C1orf96, ACTA1, NUP133, ABCB10, TAF5L, KIAA0133 q42.132 42840025 43411791 RP11-505M7 RP11-808M7 3 0.571766 0.5133208 OXER1, HAAO, ZFP36L2, THADA p212 45739300 46322822 RP11-435N1 RP11-620E7 5 0.583522 0.649470817 PRKCE p212 158219132 158917734 CTD-2025I1 RP11-286M12 6 0.698602 0.730528412 ACVR1, UPP2, LOC130940 q24.12 213184378 213874092 RP11-329G9 RP11-105N14 5 0.689714 0.544028199 IKZF2, SPAG16 V_4324_LC2633_Wong et al. (2007) q343 128748033 129266213 RP11-109F7 RP11-578I20 9 0.51818 1.148557404 GPR175, MCM2, PODXL2, ABTB1, MGLL, KLHDC6, SEC61A1 q21.3

3 196693447 197446850 RP11-744M17 RP13-497I17 8 0.753403 0.539956414 PPP1R2, APOD, MUC20, MUC4, TNK2, TFRC, FLJ25996, ZDHHC19, OSTalphaV_0042_LC4028_Iafrate et al. (2004), V_0696_LC4028_Sharp et al. (2005), V_0697_LC4028_Sharp et al. (2005), V_2064_LC4028_Locke et al. (2006),

V_2065_LC4028_Locke et al. (2006), V_4366_LC4028_Wong et al. (2007), V_4367_LC4028_Wong et al. (2007) q29

9 134919166 137348877 RP11-802E11 RP11-594G4 19 2.429711 0.628418254 GTF3C5, CEL, RALGDS, GBGT1, OBP2B, ABO, SURF6, SURF5, RPL7A, SURF1, SURF2, SURF4, C9orf96, REXO4, ADAMTS13, C9orf7, SLC2A6, LOC389827, ADAMTSL2, LOC642968, DBH, SARDH, VAV2, BRD3, WDR5, RXRA, COL5A1, FCN2, FCN1, OLFM1V_0132_LC11835_Iafrate et al. (2004), V_4657_LC11835_Wong et al. (2007), V_4658_LC11835_Wong et al. (2007), V_4659_LC11848_Wong et al. (2007),

V_4660_LC11849_Wong et al. (2007) q34.2-q34.310 76037560 76964519 RP11-448K17 RP11-735L1 10 0.926959 0.503630971 ADK, MYST4, DUPD1, DUSP13, SAMD8, VDAC2, COMTD1, LOC439985, ZNF503 q22.211 60573488 60850842 RP11-465F2 RP11-42A7 4 0.277354 0.643760073 CD5, VPS37C, PGA3, PGA4, PGA5, VWCE, DDB1 V_4747_LC13245_Wong et al. (2007), V_4748_LC13245_Wong et al. (2007) q12.211 63321142 63707538 RP11-289J6 RP13-997A21 6 0.386396 0.719559338 LOC144097, MARK2, RCOR2, NAT11, COX8A, OTUB1, LRP16, FLRT1 V_4750_LC13267_Wong et al. (2007), V_4751_LC13267_Wong et al. (2007) q13.1

11 67621613 70936495 RP11-572D13 RP11-660L16 34 3.314882 2.275493583 CHKA, SUV420H1, C11orf24, LRP5, SAPS3, GAL, MTL5, CPT1A, MRPL21, IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76, DHCR7, NADSYN1, KRTAP5-7, KRTAP5-8 V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) q13.2-q13.411 71399963 72833412 RP11-92H23 RP11-435C18 13 1.433449 0.697211865 NUMA1, LRRC51, C11orf59, C11orf51, FOLR3, FOLR1, FOLR2, INPPL1, PHOX2A, CLPB, PDE2A, CENTD2, STARD10, ATG16L2, FCHSD2, P2RY2, P2RY6, ARHGEF17, TNFRSF19L, KIAA0280 q13.411 74438635 76243828 RP11-7D24 RP11-386K9 16 1.805193 1.435967617 OR2AT4, SLCO2B1, ARRB1, RPS3, FLJ33790, GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG, WNT11, PRKRIR, C11orf30, LRRC32, LRRC54 q13.4-q13.511 78034239 78920804 RP11-7H7 RP11-621J4 7 0.886565 0.605334747 V_0151_LC13373_Iafrate et al. (2004), V_4727_LC13373_Wong et al. (2007) q14.111 110201485 111009298 RP11-234B23 RP11-542P14 5 0.807813 0.535505425 C11orf53, FLJ45803, POU2AF1, BTG4, FLJ46266, LAYN, SNF1LK2 q23.111 111694875 113526670 RP11-224G22 RP11-782J1 14 1.831795 0.638564775 NCAM1, TTC12, ANKK1, DRD2, TMPRSS5, ZW10, USP28, HTR3B, HTR3A, ZBTB16 q23.1-q23.211 114042669 116374834 RP11-59M13 RP11-4N9 20 2.332165 0.644509717 FAM55B, IGSF4, BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, KIAA0999 V_0158_LC13592_Iafrate et al. (2004), V_0159_LC13605_Iafrate et al. (2004), V_4763_LC13589_Wong et al. (2007) q23.2-q23.311 116840133 117485983 RP11-797P22 RP11-36O11 5 0.64585 0.694537895 DSCAML1, FXYD2, FXYD6, TMPRSS13, IL10RA, TMPRSS4 q23.311 118737042 119672812 RP11-135D15 RP11-784K23 11 0.93577 0.792591237 USP2, THY1, PVRL1, TRIM29, OAF, POU2F3 q23.311 119831264 120472517 RP11-50B24 RP11-701F22 5 0.641253 0.667417573 ARHGEF12, GRIK4, LRRC35 q23.3

11 125738806 126589307 RP11-1042N14 RP11-192A19 8 0.850501 0.617976495 ST3GAL4, KIRREL3 q24.211 129915267 134436732 RP11-178H20 CTD-2220K2 57 4.521465 0.789530279 C11orf44, SNX19, HNT, OPCML, SPATA19, JAM3, hCAP-D3, VPS26B, THYN1, ACAD8, GLB1L3, LOC89944, B3GAT1 V_4764_LC13705_Wong et al. (2007) q24.3-q2512 1365439 2010363 RP11-355M20 RP11-766O8 6 0.644924 0.925754261 RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2, DCP1B V_4765_LC13757_Wong et al. (2007) p13.3312 47822926 48519570 RP11-977B10 RP11-161E16 6 0.696644 0.52016389 TUBA3, TUBA1C, PRPH, TROAP, C1QL4, FLJ13236, SPATS2, KCNH3, MCRS1, C12orf25, PRPF40B, FMNL3, TEGT, LOC283331, LOC144233 q13.12-q13.1312 52542108 52939207 RP11-158I2 RP11-707F10 4 0.397099 0.56532176 HOXC13, HOXC12, HOXC11, HOXC10, HOXC9, HOXC8, HOXC6, HOXC5, HOXC4, SMUG1, CBX5 q13.1312 55508424 56107402 RP11-312E12 RP11-213J12 7 0.598978 0.707853778 SDR-O, RDH16, ADMR, ZBTB39, TAC3, MYO1A, KIAA0286, NAB2, STAT6, LRP1, NXPH4, SHMT2, LOC56901, STAC3, R3HDM2 q13.312 121961880 122155980 RP11-197N18 RP11-638P22 3 0.1941 0.797116193 ABCB9, OGFOD2, ARL6IP4, PITPNM2 V_4790_LC14504_Wong et al. (2007) q24.3113 111922473 113658045 RP11-545B15 RP11-51H10 10 1.735572 1.198344664 C13orf28, TUBGCP3, FLJ26443, ATP11A, MCF2L, F7, F10, PROZ, FLJ11305, CUL4A, LAMP1, GRTP1, ADPRHL1, DCUN1D2, TMCO3, TFDP1, ATP4B, GRK1, GAS6, FLJ41484, FAM70B V_4819_LC15248_Wong et al. (2007), V_4820_LC15248_Wong et al. (2007) q34

14 18071243 19360529 RP11-404K10 RP11-447E14 11 1.289286 0.53519584 OR11H12, POTE14, LOC440157, OR4Q3, OR4M1

V_0812_LC15340_Sharp et al. (2005), V_2174_LC15340_Locke et al. (2006), V_2256_LC15340_Locke et al. (2006), V_4822_LC15340_Wong et al. (2007), V_4823_LC15340_Wong et al. (2007), V_4824_LC15340_Wong et al. (2007), V_4825_LC15340_Wong et al. (2007), V_4826_LC15340_Wong et al. (2007),

V_0376_LC15340_Bejjani et al. (2005) q11.1-q11.215 69288554 69918255 RP11-592N21 RP11-102J4 6 0.629701 0.506078862 THSD4, NR2E3, MYO9A V_2194_LC16374_Locke et al. (2006) q2315 75603709 76111720 RP11-770L22 RP11-745I11 4 0.508011 0.506738125 LRRN6A, TBC1D2B V_4906_LC16417_Wong et al. (2007) q24.3-q25.115 83970619 84533932 RP11-100A1 RP11-553E24 4 0.563313 0.551973282 AKAP13, KLHL25, FLJ32310 V_4908_LC16467_Wong et al. (2007) q25.317 925649 1628597 RP13-503B5 RP13-588O24 10 0.702948 0.656492264 ABR, TUSC5, YWHAE, CRK, MYO1C, SKIP, PITPNA, SLC43A2, SCARF1, RILP, PRPF8, MGC14376, WDR81, SERPINF2, SERPINF1 V_4979_LC17159_Wong et al. (2007), V_4980_LC17159_Wong et al. (2007) p13.317 16536854 16800264 RP11-195H9 RP11-655O21 3 0.26341 0.51953419 TNFRSF13B p11.2

17 18026503 18503234 RP11-1319H24 RP11-667E24 7 0.476731 0.533059857 ALKBH5, LLGL1, FLII, SMCR7, TOP3A, SMCR8, SHMT1, LOC654346, LOC220594, FLJ36492, FLJ40244 V_2219_LC17388_Locke et al. (2006), V_4992_LC17388_Wong et al. (2007) p11.217 20185620 20490406 RP11-793I24 CTD-2315G10 4 0.304786 0.545744722 LOC284194 V_4995_LC17400_Wong et al. (2007), V_4996_LC17400_Wong et al. (2007), V_4997_LC17400_Wong et al. (2007) p11.217 21014521 21400045 RP11-64J19 RP13-757M5 6 0.385524 0.51453659 DHRS7B, TMEM11, MGC33894, MAP2K3, KCNJ12 p11.217 32163474 32627651 RP11-391A21 RP11-383B12 6 0.464177 0.86560055 LHX1, AATF, ACACA V_5001_LC17457_Wong et al. (2007) q1217 32864722 33697018 RP11-50A9 RP11-72I20 8 0.832296 1.042607643 TADA2L, DUSP14, AP1GBP1, DDX52, TCF2, TBC1D3B, TBC1D3 V_5002_LC17457_Wong et al. (2007), V_5004_LC17457_Wong et al. (2007), V_5005_LC17457_Wong et al. (2007) q12

17 35833079 37707027 RP11-51J19 RP11-358B23 16 1.873948 0.940358795

IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A, KRTHA3B, KRTHA4, KRTHA1, KRTHA7, KRTHA8, KRT32, KRTHA5, KRTHA6, KRT13, KRT15, KRT19, KRT9, KRT14, KRT16, KRT17, EIF1, GAST, HAP1, JUP, SC65, FKBP10, NT5C3L, KLHL10, KLHL11, ACLY, TTC25,

CNP, DNAJC7, NKIRAS2, LOC201181, LGP2, GCN5L2, HSPB9, RAB5C, KCNH4, HCRT, LGP1, STAT5B, STAT5A V_0205_LC17492_Iafrate et al. (2004) q21.217 55503143 56144554 RP11-767P9 RP11-634F5 5 0.641411 0.98027994 ABC1, CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3 V_0805_LC17601_Sharp et al. (2005) q23.1-q23.217 70695484 71304889 RP11-76G4 RP13-898A12 10 0.609405 0.603194579 NUP85, GGA3, MRPS7, MIF4GD, SLC25A19, GRB2, KIAA0195, CASKIN2, TSEN54, LLGL2, RECQL5, SAP30BP, ITGB4, GALK1, H3F3B, ZC3H5 V_5030_LC17713_Wong et al. (2007), V_5031_LC17717_Wong et al. (2007) q25.119 49677563 50320128 RP11-501F8 RP11-520B22 6 0.642565 0.619445015 ZNF180, PVR, CEACAM19, CEACAM16, BCL3, CBLC, BCAM, PVRL2, TOMM40, APOE, APOC1, APOC4, APOC2, CLPTM1, RELB, SFRS16, ZNF342, GEMIN7 V_0221_LC19039_Iafrate et al. (2004), V_5103_LC19048_Wong et al. (2007) q13.31-q13.3220 35289524 35750678 RP11-151C5 RP11-468N1 3 0.461154 0.73655157 RPN2, GHRH, MANBAL, SRC, BLCAP, NNAT, FLJ42133 q11.2320 48675561 49661575 RP11-124P7 RP11-62M15 15 0.986014 0.663556452 C20orf175, PARD6B, BCAS4, ADNP, DPM1, MOCS3, KCNG1, NFATC2, ATP9A V_5141_LC19791_Wong et al. (2007) q13.13-q13.2

20 50933934 57894179 RP11-21E17 RP11-694I10 68 6.960245 1.775561826TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4, DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C, BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1,

GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2 V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.2-q13.32

20 58951342 62434349 RP11-790G7 RP11-350G15 25 3.483007 1.086008868

CDH4, TAF4, LSM14B, PSMA7, SS18L1, GTPBP5, HRH3, OSBPL2, ADRM1, LAMA5, RPS21, CABLES2, C20orf151, GATA5, FLJ30313, C20orf166, SLCO4A1, NTSR1, C20orf20, OGFR, COL9A3, TCFL5, DIDO1, C20orf11, C20orf59, BHLHB4, YTHDF1, BIRC7, C20orf58, ARFGAP1, COL20A1, CHRNA4, KCNQ2, EEF1A2, C20orf149, PTK6, SRMS, C20orf195, PRIC285, GMEB2, STMN3, RTEL1, TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4RG, BTBD4, C20orf135, TPD52L2, DNAJC5, UCKL1, GM632, SAMD10, PRPF6, LOC284739, SOX18, TCEA2, RGS19, OPRL1, LOC198437,

NPBWR2, MYT1, PCMTD2V_2252_LC19985_Locke et al. (2006), V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al. (2007), V_5149_LC19985_Wong et al. (2007), V_5150_LC19985_Wong et al. (2007) q13.33

21 43876000 44194069 RP11-75E15 RP11-439M10 3 0.318069 0.582901161 HSF2BP, KIAA0179, PDXK, CSTB, RRP1, AGPAT3 V_5162_LC20269_Wong et al. (2007) q22.3

22 14440103 14952669 CTD-2177M20 RP11-561P7 7 0.512566 0.691860514 ACTBL1, OR11H1V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007),


22 16219550 18171498 RP11-172D7 RP11-652F11 19 1.951948 0.709029534 SLC25A18, ATP6V1E1, BCL2L13, BID, PEX26, TUBA8, USP18, DGCR6, PRODH, DGCR2, DGCR14, TSSK2, GSCL, SLC25A1, CLTCL1, HIRA, MRPL40, LOC128977, UFD1L, CDC45L, CLDN5, GP1BB, TBX1, GNB1LV_0814_LC20342_Sharp et al. (2005), V_0815_LC20342_Sharp et al. (2005), V_2258_LC20342_Locke et al. (2006), V_2259_LC20342_Locke et al. (2006),

V_2260_LC20342_Locke et al. (2006), V_5167_LC20342_Wong et al. (2007) q11.1-q11.21

22 28100521 29773502 RP11-579K12 RP11-72N24 13 1.672981 1.213559351 AP1B1, RFPL1, NEFH, THOC5, NIPSNAP1, NF2, CABP7, ZMAT5, UCRC, ASCC2, MTMR3, LOC400924, HORMAD2, LIF, OSM, LOC652968, TBC1D10A, SF3A1, LOC550631, LOC200312, SEC14L2, MTP18, SEC14L3, SEC14L4, GAL3ST1, PES1, TCN2, SLC35E4, DUSP18, OSBP2, MORC2 q12.222 34742940 35067972 RP11-75N12 RP11-587I10 3 0.325032 0.728839714 RBM9, APOL3, APOL4, APOL2, APOL1, MYH9 V_5183_LC20479_Wong et al. (2007) q12.322 48438640 48934800 RP11-94B12 RP11-232E17 6 0.49616 0.639401621 BRD1, ZBED4, ALG12, CRELD2, PIM3, FLJ41993, LOC164714, MLC1, MOV10L1 q13.33

23 47671706 48212489 RP11-423H3 RP11-344N17 4 0.540783 0.489338774 ZNF21, ZNF630, SSX6, LOC389852, SPACA5B, SSX5, SSX1, SSX9, SSX3, SSX4B, SSX4, SLC38A5 V_0822_LC20844_Sharp et al. (2005), V_0823_LC20844_Sharp et al. (2005), V_2276_LC20844_Locke et al. (2006), V_2277_LC20844_Locke et al. (2006) p11.2323 52463539 52910140 RP13-34L8 RP11-155M8 4 0.446601 0.523441768 XAGE1, SSX7, SSX2, SPANXN5, XAGE5, XAGE3 p11.22

chrom start end start.bac end.bac BACs length MB maxM genes mirnas acgh.cnvs cytobands1 110304373 110690468 RP11-354C7 RP11-142E15 3 0.386095 0.951947678 AHCYL1, FAM40A, ALX3, UBL4B, SLC6A17, KCNC4, RBM15 p13.33 128748033 129266213 RP11-109F7 RP11-578I20 9 0.51818 1.148557404 GPR175, MCM2, PODXL2, ABTB1, MGLL, KLHDC6, SEC61A1 q21.3

17 35833079 36656785 RP11-51J19 RP11-147N6 5 0.823706 0.940358795IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5, KRTAP4-4, KRTAP4-2,

KRTAP4-10, KRTAP9-2, KRTAP9-3 q21.217 55503143 56144554 RP11-767P9 RP11-634F5 5 0.641411 0.98027994 ABC1, CA4, USP32, C17orf64, APPBP2, PPM1D, BCAS3 V_0805_LC17601_Sharp et al. (2005) q23.1-q23.220 50933934 52024202 RP11-21E17 RP11-394P23 9 1.090268 1.352601167 TSHZ2, ZNF217, BCAS1 V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007) q13.220 52780463 53452169 RP11-814B18 RP11-275L10 9 0.671706 1.031273548 q13.2

Losses



Supplementary Table 1 – Gains Losses and amplifications for 12 OCCC

cell lines

Chrom = Chromosome, Start = Start of region, End = End of region, Start.bac

= bacterial artificial chromosome at start of region, End.bac = bacterial

artificial chromosome at end of region, BACs = No. of bacterial artificial

chromosomes within region of copy number alteration, Length MB = size of

copy number alteration in MB, maxM = maximum M-value (aws ratio) within

region, Mirna = micro RNAs, aCGH.CNVs = previously reported microarray

comparative genomic hybridisation copy number variations/ polymorphisms


chrom start end start.bac end.bac BACs length MB No. of Cell Lines genes mirnas acgh.cnvs cytobands

1 40860040 41566641 RP11-644L15

RP11-164K22

5 0.706601 4 RIMS3, NFYC, KCNQ4, CITED4, CTPS, FLJ23878, SCMH1 p34.2

1 55481887 61556855 RP11-387E3

RP11-108D17

57 6.074968 5 FLJ45337, PPAP2B, PRKAA2, C1orf168, C8A, C8B, DAB1, OMA1, TACSTD2, JUN, FLJ10986, HOOK1, CYP2J2, C1orf87, NFIA

V_0008_LC0405_Iafrate et al. (2004), V_4226_LC0413_Wong et al. (2007), V_4227_LC0416_Wong et al. (2007)

p32.3-p31.3

1 62669888 78081353 RP11-293K19

RP11-417K2

148 15.41147 6 USP1, DOCK7, ANGPTL3, ATG4C, FOXD3, ALG6, ITGB3BP, KIAA1799, PGM1, ROR1, UBE2U, CACHD1, RAVER2, JAK1, AK3L1, AK3L2, DNAJC6, LEPR, LEPROT, PDE4B,

SGIP1, TCTEX1D1, INSL5, WDR78, MIER1, SLC35D1, C1orf141, IL23R, IL12RB2, SERBP1, GADD45A, GNG12, DIRAS3, GPR177, RPE65, DEPDC1, LRRC7, LRRC40, SFRS11,

ANKRD13C, HHLA3, CTH, PTGER3, ZNF265, NEGR1, FPGT, TNNI3K, C1orf173, CRYZ, C1orf171, LHX8, SLC44A5, ACADM, RABGGTB, MSH4, ASB17, ST6GALNAC3,

ST6GALNAC5, PIGK, AK5, ZZZ3, USP33, FAM73A


p31.3-p31.1

1 79564467 82431016 CTD-2017D1

RP11-403N19

27 2.866549 5 LPHN2 V_4232_LC0542_Wong et al. (2007) p31.1

1 85248083 1.48E+08 RP11-679P24

RP11-793H3

408 63.0832 8 MCOLN3, WDR63, C1orf52, BCL10, DDAH1, CYR61, C1orf181, COL24A1, ODF2L, CLCA2, CLCA1, CLCA4, CLCA3, SH3GLB1, HS2ST1, LMO4, PKN2, GTF2B, KAT3, RBMXL1, GBP3, GBP1, GBP2, GBP7, GBP4, GBP5, GBP6, LRRC8B, LRRC8C, LRRC8D, ZNF326, BARHL2, ZNF644, HFM1, CDC7, TGFBR3, BRDT, ABHD7, BTBD8, C1orf146, GLMN, C1orf82, GFI1, EVI5, RPL5, FAM69A, MTF2, TMED5, CCDC18, DR1, FNBP1L, BCAR3, DNTTIP2, GCLM,

ABCA4, ARHGAP29, ABCD3, F3, SLC44A3, CNN3, ALG14, TMEM56, RWDD3, PTBP2, DPYD, SNX7, PAP2D, LPPR4, PALMD, FRRS1, AGL, SLC35A3, HIAT1, SASS6, CCDC76,

LRRC39, DBT, RTCD1, CDC14A, GPR88, VCAM1, EXTL2, SLC30A7, DPH5, EDG1, OLFM3, COL11A1, RNPC3, AMY2B, AMY2A, AMY1A, AMY1C, AMY1B, PRMT6, NTNG1, VAV3, SLC25A24, FAM102B, C1orf59, PRPF38B, FNDC7, STXBP3, C1orf62, GPSM2, CLCC1,

WDR47, TAF13, C1orf119, KIAA1324, SARS, CELSR2, PSRC1, MYBPHL, SORT1, PSMA5, SYPL2, ATXN7L2, CYB561D1, AMIGO1, GPR61, GNAI3, GNAT2, AMPD2, GSTM4, GSTM2,

GSTM1, GSTM5, GSTM3, EPS8L3, CSF1, AHCYL1, FAM40A, ALX3, UBL4B, SLC6A17, KCNC4, RBM15, SLC16A4, HBXIP, PROK1, KCNA10, KCNA2, KCNA3, CD53, C1orf103,

TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C

V_0011_LC0611_Iafrate et al. (2004), V_0012_LC0649_Iafrate et al. (2004), V_0013_LC0711_Iafrate et al. (2004), V_0681_LC0649_Sharp et al. (2005), V_0682_LC0656_Sharp et al. (2005), V_0683_LC0751_Sharp et al. (2005), V_0684_LC0752_Sharp et al. (2005), V_0685_LC0752_Sharp et al. (2005), V_2048_LC0649_Locke et al. (2006), V_2049_LC0673_Locke et al. (2006), V_2050_LC0752_Locke et al. (2006), V_2051_LC0752_Locke et al. (2006), V_2052_LC0752_Locke et al. (2006), V_4234_LC0594_Wong et al. (2007), V_4235_LC0611_Wong et al. (2007), V_4236_LC0622_Wong et al. (2007), V_4237_LC0630_Wong et al. (2007), V_4238_LC0649_Wong et al. (2007), V_4239_LC0656_Wong et al. (2007), V_4240_LC0671_Wong et al. (2007), V_4241_LC0680_Wong et al. (2007), V_4242_LC0704_Wong et al. (2007), V_4243_LC0729_Wong et al. (2007), V_4244_LC0743_Wong et al. (2007), V_4245_LC0743_Wong et al. (2007), V_4246_LC0743_Wong et al. (2007), V_4247_LC0752_Wong et al. (2007), V_4248_LC0752_Wong et al. (2007), V_4249_LC0752_Wong et al. (2007), V_4250_LC0752_Wong et al. (2007),

p22.3-q21.2

1 1.5E+08 1.52E+08 RP11-505C18

RP11-216N14

21 2.243059 7 SNX27, TNRC4, MRPL9, OAZ3, TDRKH, LINGO4, RORC, THEM5, THEM4, S100A10, S100A11, TCHHL1, HRNR, FLG, FLG2, CRNN, LCE5A, C1orf42, LCE3E, LCE3D, LCE3C,

LCE3B, LCE3A, LCE2D, LCE2C, LCE2B, LCE2A, LCE4A, C1orf45, LCE1F, LCE1E, LCE1D, LCE1C, LCE1B, LCE1A, SMCP, IVL, SPRR4, SPRR1A, SPRR3, SPRR1B, SPRR2D,

SPRR2A, SPRR2B, SPRR2E, SPRR2F, SPRR2G, LELP1, LOR, PGLYRP3, PGLYRP4, S100A9, S100A12, S100A8, S100A7A, S100A7L2, S100A7, S100A6, S100A5, S100A4,

S100A3, S100A2, S100A16, S100A14, S100A13, S100A1, C1orf77, SNAPAP, ILF2, NPR1, INTS3, SLC27A3, GATAD2B

q21.3

1 1.53E+08 1.53E+08 RP11-719O24

RP11-196D4

3 0.520007 4 IL6R, SHE, TDRD10, UBE2Q1, CHRNB2, ADAR, KCNN3, PMVK, PBXIP1, PYGO2 q21.3

1 1.53E+08 1.54E+08 RP11-263K19

RP11-702H12

11 1.050634 4 EFNA1, RAG1AP1, DPM3, KRTCAP2, TRIM46, MUC1, THBS3, MTX1, GBA, C1orf2, SCAMP3, CLK2, HCN3, PKLR, FDPS, C1orf104, RUSC1, ASH1L, MSTO1, YY1AP1, DAP3, GON4L, SYT11, RIT1, KIAA0907, RXFP4, ARHGEF2, SSR2, UBQLN4, MAPBPIP, RAB25,

LMNA, SEMA4A

V_4257_LC0831_Wong et al. (2007) q22

1 1.55E+08 2.47E+08 RP11-384J22

RP11-378I20

874 91.79802 9 PEAR1, C1orf92, ARHGEF11, FLJ16478, ETV3, FCRL5, FCRL4, FCRL3, FCRL2, FCRL1, CD5L, KIRREL, CD1D, CD1A, CD1C, CD1B, CD1E, OR10T2, OR10K2, OR10K1, OR10R2,

OR6Y1, OR10X1, OR10Z1, SPTA1, OR6K2, OR6K3, OR6K6, OR6N1, OR6N2, MNDA, PYHIN1, IFI16, AIM2, IGSF4B, DARC, FCER1A, OR10J3, OR10J1, OR10J5, APCS, CRP, DUSP23, FCRL6, SLAMF8, VSIG8, CCDC19, TAGLN2, IGSF9, SLAMF9, PIGM, KCNJ10,

KCNJ9, IGSF8, ATP1A2, ATP1A4, CASQ1, PEA15, WDR42A, PEX19, COPA, NCSTN, NHLH1, VANGL2, SLAMF6, CD84, SLAMF1, CD48, SLAMF7, LY9, CD244, ITLN1, ITLN2, F11R, USF1, ARHGAP30, PVRL4, KARCA1, PFDN2, NIT1, DEDD, UFC1, USP21, PPOX,

B4GALT3, ADAMTS4, NDUFS2, FCER1G, APOA2, TOMM40L, NR1I3, MPZ, SDHC, C1orf192, FCGR2A, HSPA6, FCGR3A, FCGR2C, FCGR3B, FCGR2B, FCRLM1, FCRLM2,

DUSP12, ATF6, OLFML2B, NOS1AP, C1orf111, FLJ13137, SH2D1B, UHMK1, UAP1, DDR2, HSD17B7, C1orf110, RGS4, RGS5, NUF2, PBX1, LMX1A, RXRG, LRRC52, MGST3,

ALDH9A1, TMCO1, UCK2, FAM78B, POGK, TADA1L, C1orf32, MAEL, GPA33, DUSP27, POU2F1, CD247, CREG1, RCSD1, MPZL1, SAC, BRP44, IQWD1, GPR161, TIPRL, SFT2D2,

TBX19, XCL2, XCL1, DPT, ATP1B1, NME7, BL

V_0014_LC0941_Iafrate et al. (2004), V_0015_LC0954_Iafrate et al. (2004), V_0016_LC1285_Iafrate et al. (2004), V_0017_LC1401_Iafrate et al. (2004), V_0686_LC1055_Sharp et al. (2005), V_0687_LC1055_Sharp et al. (2005), V_2053_LC1052_Locke et al. (2006), V_2054_LC1055_Locke et al. (2006), V_2055_LC1055_Locke et al. (2006), V_2056_LC1401_Locke et al. (2006), V_2091_LC1120_Locke et al. (2006), V_4258_LC0863_Wong et al. (2007), V_4259_LC0863_Wong et al. (2007), V_4260_LC0878_Wong et al. (2007), V_4261_LC0907_Wong et al. (2007), V_4262_LC0938_Wong et al. (2007), V_4263_LC0946_Wong et al. (2007), V_4264_LC0975_Wong et al. (2007), V_4265_LC0992_Wong et al. (2007), V_4266_LC1019_Wong et al. (2007), V_4267_LC1097_Wong et al. (2007), V_4268_LC1117_Wong et al. (2007), V_4269_LC1125_Wong et al. (2007), V_4270_LC1176_Wong et al. (2007), V_4271_LC1296_Wong et al. (2007), V_4272_LC1302_Wong et al. (2007)

q23.1-q44

2 41662 10159361 CTD-2379H9

CTD-2016I16

85 10.1177 6 SH3YL1, ACP1, LOC285016, TMEM18, SNTG2, TPO, PXDN, MYT1L, TSSC1, TTC15, ADI1, RNASEH1, RPS7, COLEC11, ALLC, SOX11, FLJ41046, LOC129607, RSAD2, RNF144, ID2, KIDINS220, OACT2, DDEF2, ITGB1BP1, CPSF3, LOC285148, ADAM17, YWHAQ, TAF1B,

GRHL1, KLF11, CYS1


2 11947820 91033058 RP11-489A14

RP11-707D4

769 79.08524 8 TRIB2, FAM84A, NAG, DDX1, MYCN, FAM49A, VSNL1, SMC6, FLJ40869, KCNS3, RDH14, NT5C1B, OSR1, LOC130502, WDR35, MATN3, LAPTM4A, SDC1, PUM2, RHOB, HS1BP3, GDF7, C2orf43, APOB, UBXD4, LOC388931, FLJ21945, FKBP1B, SF3B14, TP53I3, PFN4,

FLJ30851, ITSN2, NCOA1, LOC391356, MGC11266, ADCY3, RBJ, POMC, DNMT3A, DTNB, ASXL2, KIF3C, RAB10, HADHA, HADHB, GPR113, SELI, MGC16372, OTOF, CIB4, KCNK3,

C2orf18, CENPA, DPYSL5, MAPRE3, FLJ20254, FLJ21839, EMILIN1, KHK, CGREF1, ABHD1, PREB, MGC44505, TCF23, SLC5A6, C2orf28, CAD, SLC30A3, DNAJC5G, TRIM54,

UCN, MPV17, GTF3C2, EIF2B4, SNX17, ZNF513, PPM1G, NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS,

BRE, FOSL2, PLB1, PPP1CB, SPDY1, FLJ20628, LOC165186, FLJ34931, RSNL2, ALK, YPEL5, LBH, LYCAT, CAPN13, GALNT14, EHD3, XDH, SRD5A2, C2orf4, LOC84661,

SPAST, SLC30A6, CARD12, YIPF4, BIRC6, FLJ20272, LTBP1, RASGRP3, FAM98A, CRIM1, FEZ2, VIT, STRN, KIAA1414, CCDC75, EIF2AK2, SULT6B1, CEBPZ, PRO1853, PRKD3, QPCT, CDC42EP3, FAM82A, CYP1B1, MGC34824, ARL6IP2, HNRPLL, GALM, SFRS7,

GEMIN6, DHX57, SOS1, CDKL4, MAP4K3, MG

V_0018_LC1749_Iafrate et al. (2004), V_0019_LC1897_Iafrate et al. (2004), V_0020_LC1992_Iafrate et al. (2004), V_0689_LC1609_Sharp et al. (2005), V_2057_LC2046_Locke et al. (2006), V_2058_LC2046_Locke et al. (2006), V_4275_LC1625_Wong et al. (2007), V_4277_LC1732_Wong et al. (2007), V_4278_LC1739_Wong et al. (2007), V_4279_LC1749_Wong et al. (2007), V_4280_LC1749_Wong et al. (2007), V_4281_LC1752_Wong et al. (2007), V_4282_LC1766_Wong et al. (2007), V_4283_LC1814_Wong et al. (2007), V_4284_LC1832_Wong et al. (2007), V_4285_LC1867_Wong et al. (2007), V_4286_LC1888_Wong et al. (2007), V_4287_LC1900_Wong et al. (2007), V_4288_LC1904_Wong et al. (2007), V_4289_LC1968_Wong et al. (2007), V_4290_LC1992_Wong et al. (2007), V_4291_LC2035_Wong et al. (2007), V_4292_LC2035_Wong et al. (2007), V_4293_LC2035_Wong et al. (2007), V_4294_LC2035_Wong et al. (2007), V_4295_LC2046_Wong et al. (2007), V_4296_LC2046_Wong et al. (2007), V_4297_LC2046_Wong et al. (2007), V_4298_LC2046_Wong et al. (2007), V_5025_LC1905_Wong et al. (2007),

p25.1-p11.1

2 94689898 1.21E+08 RP11-134N21

RP11-438O12

247 26.15304 7 TEKT4, MAL, MRPS5, ZNF514, ZNF2, PROM2, KCNIP3, FAHD2A, TRIM43, LOC150763, ADRA2B, ASTL, DUSP2, STARD7, LOC285033, TMEM127, WDR39, ASCC3L1, KIAA1754L,

BRRN1, LINCR, ARID5A, FLJ10081, LOC90342, LMAN2L, CNNM4, CNNM3, ANKRD23, ANKRD39, SEMA4C, LOC51252, DKFZp434N062, ANKRD36, KIAA1641, COX5B, ACTR1B, ZAP70, MGC26733, CNGA3, INPP4A, MGC52110, UNC50, MGAT4A, MGC42367, TSGA10, C2orf15, LIPT1, LOC129531, MRPL30, LYG2, LOC129530, TXNDC9, EIF5B, REV1L, AFF3,

LONRF2, CHST10, NMS, PDCL3, NPAS2, RPL31, C2orf29, RNF149, CREG2, MAP4K4, IL1R2, IL1R1, IL1RL2, IL1RL1, IL18R1, IL18RAP, SLC9A4, SLC9A2, MGC11332, FLJ30294, POU3F3, MRPS9, GPR45, TGFBRAP1, MGC5509, FHL2, NCK2, ECRG4, UXS1, ST6GAL2,

SLC5A7, SULT1C3, SULT1C1, SULT1C2, GCC2, LIMS1, RANBP2, FLJ32745, EDAR, LOC729164, C2orf26, MALL, NPHP1, LIMS3, RGPD5, RGPD7, BUB1, ACOXL, BCL2L11,

ANAPC1, MERTK, TMEM87B, FLJ37440, ZC3H8, ZC3H6, TTL, POLR1B, CHCHD5, SLC20A1, FLJ40629, IL1A, IL1B, IL1F7, IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4,

PAX8, CBWD2, FOXD4L1, RABL2A, SLC35F5, ACTR3, DPP10, DDX18, FLJ10996, INSIG2, EN1, MARCO, C1QL2, STEAP3, LOC130355, D

V_0021_LC2111_Iafrate et al. (2004), V_0690_LC2119_Sharp et al. (2005), V_0691_LC2121_Sharp et al. (2005), V_0692_LC2122_Sharp et al. (2005), V_2059_LC2126_Locke et al. (2006), V_2060_LC2134_Locke et al. (2006), V_4299_LC2057_Wong et al. (2007), V_4300_LC2064_Wong et al. (2007), V_4301_LC2072_Wong et al. (2007), V_4302_LC2081_Wong et al. (2007), V_4303_LC2134_Wong et al. (2007), V_4304_LC2184_Wong et al. (2007)

q11.1-q14.2

2 1.22E+08 1.27E+08 RP11-2M3 RP11-2M10

41 5.168414 5 CLASP1, MKI67IP, TSN, CNTNAP5 q14.2-q14.3

2 1.29E+08 1.34E+08 RP11-159J24

RP11-736B1

48 4.374984 5 RAB6C, CCDC74B, NSMASE3, FLJ14346, LOC112714, MGC12981, IMP4, PTPN18, CFC1, LOC653275, GPR148, FLJ38377, ARHGEF4, LOC130074, PLEKHB2, POTE2, LOC150786,

H2-ALPHA, FAM128A, CCDC74A, FKSG30, C2orf27, MGC50273, FLJ41821, GPR39, LYPD1,NAP5

V_0024_LC2234_Iafrate et al. (2004), V_0025_LC2234_Iafrate et al. (2004), V_0693_LC2234_Sharp et al. (2005), V_4306_LC2234_Wong et al. (2007), V_4307_LC2234_Wong et al. (2007), V_4308_LC2246_Wong et al. (2007)

q14.3-q21.2

2 1.37E+08 1.71E+08 RP11-498F10

RP11-81F17

320 34.10031 6 THSD7B, HNMT, LOC339745, NXPH2, LRP1B, KYNU, ARHGAP15, GTDC1, ZFHX1B, ACVR2A, ORC4L, MBD5, EPC2, KIF5C, LOC130576, MGC52057, C2orf25, RND3, FLJ45645, NMI, TNFAIP6, RIF1, NEB, ARL5A, CACNB4, STAM2, FMNL2, ARL6IP6, RPRM, GALNT13,

KCNJ3, NR4A2, GPD2, GALNT5, KIAA1189, PSCDBP, ACVR1C, ACVR1, UPP2, LOC130940, PKP4, LOC92196, TANC1, WDSUB1, BAZ2B, CD302, LY75, PLA2R1, ITGB6, RBMS1, TANK, PSMD14, TBR1, SLC4A10, DPP4, GCG, FAP, IFIH1, GCA, KCNH7, FIGN,

GRB14, COBLL1, FLJ39822, SCN3A, SCN2A2, TAIP-2, GALNT3, TTC21B, SCN1A, SCN9A, SCN7A, CMYA3, B3GALT1, STK39, LASS6, NOSTRIN, SPBC25, G6PC2, ABCB11, DHRS9,

LRP2, BBS5, KBTBD10, FLJ21901, PPIG, PHOSPHO2, KLHL23, SSB, METTL5, ZNF650, MYO3B

V_0027_LC2428_Iafrate et al. (2004), V_4309_LC2319_Wong et al. (2007), V_4310_LC2333_Wong et al. (2007), V_4311_LC2333_Wong et al. (2007), V_4312_LC2343_Wong et al. (2007), V_4313_LC2352_Wong et al. (2007), V_4314_LC2392_Wong et al. (2007), V_4315_LC2398_Wong et al. (2007), V_4316_LC2400_Wong et al. (2007), V_4317_LC2405_Wong et al. (2007),

V_4318_LC2416_Wong et al. (2007)

q22.1-q31.1

2 1.73E+08 1.75E+08 RP11-1E20

RP11-451F14

18 2.043566 4 ITGA6, PDK1, RAPGEF4, ZAK, CDCA7, SP3, PTD004, FLJ46347 V_0028_LC2438_Iafrate et al. (2004) q31.1

2 1.77E+08 1.97E+08 CTD-2135J8

RP11-555H24

179 20.52542 6 MTX2, HNRPA3, NFE2L2, AGPS, TTC30B, TTC30A, PDE11A, DRB1, OSBPL6, PRKRA, DFNB59, FKBP7, PLEKHA3, TTN, FLJ39502, SESTD1, ZNF533, KIAA1604, UBE2E3, ITGA4,

CERKL, NEUROD1, SSFA2, PPP1R1C, PDE1A, DNAJC10, FRZB, NCKAP1, DUSP19, NUP35, C2orf10, FSIP2, FLJ44048, ZC3H15, ITGAV, KIAA1946, ZSWIM2, CALCRL, TFPI, GULP1, DIRC1, COL3A1, COL5A2, WDR75, SLC40A1, ASNSD1, FLJ25415, OSGEPL1,

ORMDL1, PMS1, GDF8, MGC13057, HIBCH, INPP1, FLJ20160, NAB1, GLS, STAT1, STAT4, MYO1B, OBFC2A, SDPR, TMEFF2, SLC39A10, DNAH7, STK17B, HECW2, FLJ39660,

GTF3C3, UNQ6411

V_0029_LC2519_Iafrate et al. (2004), V_4319_LC2466_Wong et al. (2007), V_4320_LC2500_Wong et al. (2007), V_4321_LC2510_Wong et al. (2007), V_4322_LC2517_Wong et al. (2007), V_4323_LC2558_Wong et al. (2007)

q31.1-q33.1

3 1.03E+08 1.1E+08 RP11-730D3

RP11-148O7

82 6.823604 5 ZPLD1, ALCAM, CBLB, CCDC54, BBX, CD47, IFT57, HHLA2, KIAA1524, DZIP3, RETNLB V_4348_LC3482_Wong et al. (2007), V_4349_LC3494_Wong et al. (2007) q12.3-q13.13

3 1.11E+08 1.13E+08 RP11-204G14

RP11-489M5

25 1.911122 5 PVRL3, CD96, ZBED2 V_4350_LC3509_Wong et al. (2007) q13.13-q13.2

3 1.16E+08 1.17E+08 RP11-529M24

RP11-140J15

12 1.222001 4 ZBTB20, GAP43, LSAMP q13.31

3 1.18E+08 1.18E+08 RP11-747H24

RP11-805P16

4 0.554758 4 q13.31

3 1.19E+08 1.22E+08 RP11-768G7

RP11-151F11

33 3.49343 4 IGSF11, C3orf30, UPK1B, B4GALT4, CDGAP, TMEM39A, C3orf9, C3orf1, CD80, ADPRH, PLA1A, POPDC2, COX17, C3orf15, NR1I2, GSK3B, GPR156, FSTL1, NDUFB4, HGD,

RABL3, GTF2E1

V_0035_LC3553_Iafrate et al. (2004) q13.32-q13.33

3 1.23E+08 1.23E+08 RP11-134G9

RP11-742P12

10 0.561191 4 HCLS1, GOLGB1, IQCB1, EAF2, SLC15A2, ILDR1, CD86, CASR q13.33-q21.1

3 1.31E+08 1.35E+08 RP11-687B8

RP11-542F6

24 3.26646 4 FLJ35880, PIK3R4, ATP2C1, ASTE1, NEK11, NUDT16, MRPL3, CPNE4, ACPP, DNAJC13, ACAD11, CCRL1, UBE1DC1, NPHP3, TMEM108, BFSP2


3 1.44E+08 1.84E+08 RP11-745O22

CTD-2380J5

381 39.67059 7 SLC9A9, C3orf58, PLOD2, PLSCR4, PLSCR2, PLSCR1, ZIC4, ZIC1, AGTR1, CPB1, CPA3, GYG1, HLTF, HPS3, CP, TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2,

TSC22D2, SERP1, EIF2A, SELT, C3orf44, SIAH2, USH3A, MED12L, GPR171, P2RY14, GPR87, P2RY13, P2RY12, IGSF10, AADACL2, AADAC, SUCNR1, MBNL1, P2RY1, RAP2B,

SGEF, DHX36, GPR149, MME, PLCH1, C3orf33, SLC33A1, GMPS, KCNAB1, SSR3, TIPARP, FLJ16641, CCNL1, VEPH1, PTX3, SHOX2, RSRC1, MLF1, GFM1, LXN, RARRES1, MFSD1, IQCJ, SCHIP1, IL12A, IFT80, SMC4L1, TRIM59, KPNA4, ARL14, PPM1L, B3GALT3, NMD3, C3orf57, LOC131149, SI, SLITRK3, BCHE, FLJ23049, SERPINI2, WDR49, PDCD10, SERPINI1, GOLPH4, EVI1, MDS1, ARPM1, MYNN, LRRC34, LOC344657, LRRC31, SAMD7, TLOC1, GPR160, PHC3, PRKCI, SKIL, CLDN11, SLC7A14, EIF5A2, SLC2A2, TNIK, PLD1, FNDC3B, GHSR, TNFSF10, AADACL1, ECT2, SPATA16, NLGN1, NAALADL2, TBL1XR1, KCNMB2, WIG1, PIK3CA, KCNMB3, ZNF639, MFN1, GNB4, ACTL6A, MRPL47, NDUFB5,

USP13, PEX5L, TTC14, FXR1, DNAJC19, SOX2, ATP11B

V_0037_LC3745_Iafrate et al. (2004), V_0038_LC3802_Iafrate et al. (2004), V_0039_LC3834_Iafrate et al. (2004), V_0040_LC3895_Iafrate et al. (2004), V_4355_LC3723_Wong et al. (2007), V_4356_LC3737_Wong et al. (2007), V_4357_LC3748_Wong et al. (2007), V_4358_LC3775_Wong et al. (2007), V_4359_LC3802_Wong et al. (2007), V_4360_LC3802_Wong et al. (2007), V_4361_LC3802_Wong et al. (2007), V_4362_LC3840_Wong et al. (2007),

V_4363_LC3872_Wong et al. (2007)

q23-q26.33

3 1.88E+08 1.95E+08 RP11-529D12

RP11-730E2

64 6.984252 7 ST6GAL1, RPL39L, RTP1, MASP1, RTP4, SST, RTP2, BCL6, LPP, FAM79B, TP73L, LEPREL1, CLDN1, CLDN16, UNQ846, IL1RAP, OSTN, UTS2D, CCDC50, POP2, FGF12,

C3orf59, HRASLS, ATP13A5, ATP13A4, OPA1

V_2062_LC4004_Locke et al. (2006) q27.3-q29

3 1.98E+08 1.99E+08 RP11-803A10

RP13-616I3

7 0.568756 5 MFI2, DLG1, BDH1 V_0043_LC4057_Iafrate et al. (2004) q29

5 72312 2556940 RP11-811I15

RP11-32G8

19 2.484628 4 KIAA1909, LOC389257, LOC133957, SDHA, PDCD6, AHRR, EXOC3, SLC9A3, CEP72, TPPP, ZDHHC11, BRD9, TRIP13, NKD2, SLC12A7, SLC6A19, SLC6A18, TERT, CLPTM1L,

SLC6A3, AYTL2, MRPL36, NDUFS6, IRX4

V_0704_LC6379_Sharp et al. (2005), V_0705_LC6379_Sharp et al. (2005), V_0706_LC6379_Sharp et al. (2005), V_0707_LC6379_Sharp et al. (2005), V_2077_LC6379_Locke et al. (2006), V_2078_LC6379_Locke et al. (2006), V_2079_LC6379_Locke et al. (2006), V_2080_LC6379_Locke et al. (2006), V_2081_LC6379_Locke et al. (2006), V_4228_LC6379_Wong et al. (2007), V_4427_LC6379_Wong et al. (2007), V_4428_LC6379_Wong et al. (2007),

V_4429_LC6379_Wong et al. (2007)

p15.33

5 4002349 54987398 RP11-614B9

RP11-173I16

557 50.98505 6 ADAMTS16, FLJ33360, TRG20, NSUN2, SRD5A1, POLS, ADCY2, MGC5297, MTRR, SEMA5A, TAS2R1, LOC134145, CCT5, LOC134147, ROPN1L, DAP, CTNND2, DNAH5,

TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10, BASP1, CDH18, CDH12, PRDM9, CDH10, CDH9, CDH6, RNASEN, FLJ11193, PDZD2, GOLPH3, MTMR12,

ZFR, SUB1, NPR3, C5orf23, TARS, ADAMTS12, RXFP3, SLC45A2, AMACR, C1QTNF3, RAI14, FLJ25439, RAD1, BXDC2, DNAJA5, AGXT2, PRLR, FLJ23577, IL7R, CAPSL, UGT3A1, UGT3A2, LMBRD2, SKP2, C5orf33, FLJ25422, SLC1A3, NIPBL, FLJ13231,

NUP155, WDR70, GDNF, FLJ39155, LIFR, OSMR, RICTOR, FYB, C9, DAB2, PTGER4, TTC33, PRKAA1, RPL37, CARD6, C7, FLJ40243, C6, PLCXD3, OXCT1, LOC285636,

FBXO4, GHR, SEPP1, LOC389289, ZNF131, MGC42105, HMGCS1, CCL28, FLJ21657, FLJ32363, PAIP1, NNT, FGF10, MRPS30, LOC441070, HCN1, EMB, PARP8, ISL1, PELO,

ITGA1, ITGA2, MOCS2, FST, NDUFS4, ARL15, HSPB3, SNAG1, ESM1, GZMK, GZMA, FLJ37927, LOC493869, UNG2, DHX29, SKIV2L2, PPAP2A, FLJ90709

V_0061_LC6634_Iafrate et al. (2004), V_0062_LC6809_Iafrate et al. (2004), V_0063_LC6852_Iafrate et al. (2004), V_0708_LC6659_Sharp et al. (2005), V_0709_LC6669_Sharp et al. (2005), V_2082_LC6572_Locke et al. (2006), V_2083_LC6669_Locke et al. (2006), V_2084_LC6669_Locke et al. (2006), V_2085_LC6669_Locke et al. (2006), V_2086_LC6794_Locke et al. (2006), V_2087_LC6794_Locke et al. (2006), V_4430_LC6506_Wong et al. (2007), V_4431_LC6634_Wong et al. (2007), V_4432_LC6634_Wong et al. (2007), V_4433_LC6655_Wong et al. (2007), V_4434_LC6659_Wong et al. (2007), V_4435_LC6669_Wong et al. (2007), V_4436_LC6669_Wong et al. (2007), V_4437_LC6794_Wong et al. (2007), V_4438_LC6794_Wong et al. (2007), V_4439_LC6842_Wong et al. (2007), V_4441_LC6869_Wong et al. (2007), V_4442_LC6871_Wong et al. (2007), V_4443_LC6881_Wong et al. (2007), V_4444_LC6892_Wong et al. (2007), V_4445_LC6923_Wong et al. (2007),

V_5051_LC6639_Wong et al. (2007)

p15.33-q11.2

5 55546768 56265652 RP11-412L4

CTD-2310F14

11 0.718884 4 FLJ11795, MGC33648, MIER3 q11.2

5 82793638 85681054 RP11-275E14

RP11-468L13

39 2.887416 4 CSPG2, HAPLN1, EDIL3 V_0066_LC7143_Iafrate et al. (2004), V_4458_LC7135_Wong et al. (2007) q14.2-q14.3

5 87839781 89745630 RP11-721P4

RP11-795O19

25 1.905849 4 MEF2C, CETN3 V_4460_LC7164_Wong et al. (2007) q14.3

5 91005744 92593192 RP11-762I14

RP11-637D5

24 1.587448 4 V_4461_LC7181_Wong et al. (2007), V_4462_LC7186_Wong et al. (2007), V_4463_LC7186_Wong et al. (2007)

q14.3-q15

5 1.35E+08 1.36E+08 RP11-240B18

RP11-260I9

24 1.201368 4 LOC153328, IL9, FBXL21, LECT2, TGFBI, SMAD5, TRPC7, SPOCK1 q31.1-q31.2

5 1.42E+08 1.45E+08 CTD-2024C20

RP11-706L1

27 2.242172 5 ARHGAP26, NR3C1, HB-1, YIPF5, KCTD16 q31.3-q32

5 1.47E+08 1.49E+08 RP11-228N19

RP11-19G16

25 1.575781 4 JAKMIP2, SPINK1, SCGB3A2, MGC23985, SPINK5, SPINK5L2, SPINK6, SPINK5L3, SPINK7,SPINK9, FBXO38, HTR4, ADRB2, SH3TC2, ABLIM3

q32-q33.1

5 1.58E+08 1.59E+08 RP11-116E3

RP11-708F10

13 1.514937 4 EBF, FLJ31951, UBLCP1, IL12B, ADRA1B, TTC1 q33.3

5 1.61E+08 1.67E+08 RP11-326L23

CTD-2026J1

61 6.674625 4 GABRB2, GABRA6, GABRA1, GABRG2, CCNG1, NUDCD2, HMMR, MAT2B, ODZ2 q34

7 6324338 43911336 RP11-437P5

RP11-343J6

358 37.587 8 MGC12966, RAC1, LOC221955, KDELR2, ZDHHC4, C7orf26, ZNF12, LOC222967, C7orf28B, C1GALT1, COL28A1, FLJ20323, RPA3, GLCCI1, ICA1, NXPH1, LOC392631, NDUFA4,

PHF14, TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L,

TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8, SP4, DNAH11, CDCA7L, RAPGEF5, IL6, TOMM7, DRCTNNB1A, KLHL7, NUPL2, GPNMB, C7orf30, IGF2BP3, TRA2A, LOC90693,

C7orf46, STK31, NPY, MPP6, DFNA5, OSBPL3, CYCS, C7orf31, C7orf9, NFE2L3, HNRPA2B1, CBX3, SNX10, SCAP2, HOXA1, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6,

HOXA7, HOXA9, HOXA10, HOXA11, HOXA13, EVX1, HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171, WIPF3, SCRN1, FKBP14, PLEKHA8, C7orf41, ZNRF2,

CARD4, C7orf24, GARS, CRHR2, INMT, FLJ22374, AQP1, GHRHR, ADCYAP1R1, NEUROD6, LOC223075, C7orf16, PDE1C, LSM5, KIAA0241, LOC441208, KBTBD2,

LOC441212, FKBP9, NT5C3, RP9, PTHB1, BMPER, AAA1, GPR154, TBX20, FLJ22313, KIAA1706, KIAA0895, ANLN, AOAH, ELMO1, GPR141, TXNDC3, SFRP4, EPDR1,

STARD3NL, TARP, AMPH, VPS41, POU6F2, C

V_0094_LC9325_Iafrate et al. (2004), V_0096_LC9323_Iafrate et al. (2004), V_0097_LC9326_Iafrate et al. (2004), V_0099_LC9326_Iafrate et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004), V_0103_LC9328_Iafrate et al. (2004), V_0719_LC9421_Sharp et al. (2005), V_2099_LC9264_Locke et al. (2006), V_4525_LC9277_Wong et al. (2007), V_4526_LC9320_Wong et al. (2007), V_4527_LC9340_Wong et al. (2007), V_4528_LC9358_Wong et al. (2007), V_4529_LC9384_Wong et al. (2007), V_4530_LC9436_Wong et al. (2007),

V_4531_LC9464_Wong et al. (2007)

p22.1-p13

7 44973357 55387311 CTD-2204C20

RP11-708P5

101 10.41395 7 MYO1G, CCM2, TBRG4, RAMP3, ADCY1, IGFBP1, IGFBP3, LOC641980, TNS3, PKD1L1, FLJ21075, HUS1, SUNC1, UPP1, ABCA13, VWC2, ZPBP, ZNFN1A1, FIGNL1, DDC, GRB10,

COBL, DKFZp564N247, FLJ45974, MGC33530, SEC61G, EGFR

V_4533_LC9471_Wong et al. (2007), V_4534_LC9482_Wong et al. (2007), V_4535_LC9486_Wong et al. (2007), V_4536_LC9495_Wong et al. (2007),

V_4537_LC9518_Wong et al. (2007)

p13-p11.2

7 57194816 57964582 RP11-237O15

RP11-548K12

11 0.769766 4 p11.2-p11.1

7 64068271 64921480 RP11-225E12

RP11-479O9

24 0.853209 5 ZNF117, ZNF92 V_0722_LC9554_Sharp et al. (2005), V_2101_LC9554_Locke et al. (2006) q11.21

7 65529244 75345977 RP11-618F10

RP11-812L15

120 9.816733 6 KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1, AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1,

WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B, LOC441257, DKFZP434A013, LOC442578, LOC541473, TRIM50B, NSUN5B, PMS2L3, HIP1, CCL26,

CCL24

V_2102_LC9561_Locke et al. (2006), V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007),

V_4545_LC9609_Wong et al. (2007)

q11.21-q11.23

7 75960861 97174738 RP11-122A5

RP11-312C19

209 21.21388 5 DTX2, UPK3B, POMZP3, KIAA1505, FGL2, LOC54103, PTPN12, RSBN1L, TMEM60, PHTF2, MAGI2, MGC34774, GNAI1, CD36, SEMA3C, HGF, CACNA2D1, SEMA3E, SEMA3A,

SEMA3D, GRM3, KIAA1324L, DMTF1, C7orf23, CROT, ABCB4, ABCB1, RPIB9, MCFP, DBF4, ADAM22, SRI, STEAP4, FLJ32110, MGC26647, STEAP1, STEAP2, FLJ21062,

DKFZP686A101, CLDN12, PFTK1, FZD1, MTERF, AKAP9, CYP51A1, LOC401387, KRIT1, GATAD1, PEX1, DKFZP564O052, MGC40405, CDK6, SAMD9, SAMD9L, LOC253012, FLJ20097, CALCR, TFPI2, GNGT1, GNG11, BET1, COL1A2, CASD1, SGCE, PEG10,

PPP1R9A, PON1, PON3, PON2, ASB4, PDK4, DYNC1I1, SLC25A13, FLJ42280, SHFM1, DLX6, DLX5, ACN9

V_0105_LC9667_Iafrate et al. (2004), V_0106_LC9682_Iafrate et al. (2004), V_0723_LC9631_Sharp et al. (2005), V_4546_LC9689_Wong et al. (2007)

q11.23-q21.3

7 1.02E+08 1.05E+08 RP11-617P22

RP11-708P17

21 2.648457 4 FBXL13, LRRC17, SVH, NAPE-PLD, FLJ36166, PMPCB, ZRF1, PSMC2, SLC26A5, RELN, ORC5L, LHFPL3, MLL5, SRPK2, PUS7

q22.1-q22.2

7 1.1E+08 1.15E+08 RP11-495O8

RP11-695F7

36 4.282713 4 IMMP2L, LRRN3, DOCK4, ZNF277P, IFRD1, FLJ39575, FLJ13576, FLJ31818, GPR85, PPP1R3A, FOXP2, MDFIC


7 1.16E+08 1.17E+08 RP11-730H9

CTD-2125N8

7 0.828937 4 CAV2, CAV1, MET, CAPZA2, ST7, WNT2 q31.2

7 1.32E+08 1.38E+08 RP11-67O6

RP11-183I20

61 5.236203 4 CHCHD3, EXOC4, FLJ32786, SLC35B4, AKR1B1, AKR1B10, LOC441282, BPGM, CALD1, TMEM140, MGC5242, HSPC049, LOC346673, CNOT4, NUP205, SLC13A4, UNQ1940,

MTPN, CHRM2, PTN, DGKI, CREB3L2, AKR1D1

q32.3-q34

7 1.4E+08 1.42E+08 RP11-447A24

CTD-2087C12

23 1.963437 4 BRAF, MRPS33, LOC401410, MULK, KIAA1147, FLJ40852, SSBP1, TAS2R3, TAS2R4, TAS2R5, LOC136242, OR9A4, CLEC5A, TAS2R38, MGAM, TRY1, PRSS1, PRSS2


V_4567_LC10013_Wong et al. (2007)

q34

7 1.44E+08 1.46E+08 RP11-466N22

RP11-593N14

17 1.576217 4 TPK1, LOC402715, CNTNAP2 q35

7 1.46E+08 1.47E+08 RP11-739B3

RP11-162A9

5 0.679104 4 CNTNAP2 q35

7 1.51E+08 1.52E+08 RP11-796I2

RP11-137O21

3 0.435746 4 GALNTL5, GALNT11, MLL3 q36.1

8 54763817 55571528 RP11-289K4

RP11-749I21

7 0.807711 4 ATP6V1H, RGS20, TCEA1, LYPLA1, MRPL15, SOX17 q11.23

8 56002437 56407692 RP11-322N15

RP11-42J12

4 0.405255 4 XKR4 q12.1

8 57547319 66325607 RP11-17A4

RP11-350B15

75 8.778288 6 IMPAD1, C8orf72, LOC137886, CYP7A1, SDCBP, NSMAF, TOX, CA8, RAB2, CHD7, MGC34646, ASPH, FAM77D, FLJ39198, GGH, TTPA, YTHDF3, BHLHB5, CYP7B1


V_4598_LC10640_Wong et al. (2007)

q12.1-q13.1

8 68439786 1.44E+08 RP11-252K16

RP11-774L4

638 75.3845 8 CPA6, DEPDC2, C8orf34, SULF1, SLCO5A1, PRDM14, NCOA2, TRAM1, LACTB2, XKR9, EYA1, MSC, TRPA1, KCNB2, TERF1, RPESP, RPL7, RDH10, STAU2, UBE2W, TCEB1,

TMEM70, LY96, JPH1, GDAP1, PI15, CRISPLD1, HNF4G, ZFHX4, PXMP3, PKIA, C8orf70, IL7, STMN2, HEY1, MRPS28, TPD52, ZBTB10, ZNF704, PAG1, FABP5, PMP2, PERF15,

FABP4, IMPA1, SLC10A5, ZFAND1, CHMP4C, SNX16, LOC138046, LRRCC1, E2F5, CA13, CA1, CA3, CA2, REXO1L1, PSKH2, ATP6V0D2, SLC7A13, WWP1, FAM82B, CPNE3, CNGB3, CNBD1, WDR21C, MMP16, RIPK2, C8orf1, NBN, DECR1, CALB1, TMEM64,

EFCBP1, TMEM55A, OTUD6B, SLC26A7, RUNX1T1, RBM12B, TMEM67, PPM2C, CDH17, GEM, RAD54B, KIAA1429, RBM35A, DPY19L4, INTS8, CCNE2, TP53INP1, C8orf38,

PLEKHF2, C8orf37, GDF6, UQCRB, MTERFD1, PTDSS1, SDC2, PGCP, TSPYL5, MTDH, LAPTM4B, MATN2, RPL30, C8orf47, HRSP12, POP1, NPAL2, KCNS2, STK3, OSR2,

VPS13B, COX6C, RGS22, FBXO43, POLR2K, SPAG1, RNF19, ANKRD46, MGC39715, PABPC1, YWHAZ, ZNF706, GRHL2, NCALD, RRM2B, EDD1, ODF1, KLF10, AZIN1,

ATP6V1C1, BAALC, FZD6, CTHRC1, SLC25A32, WDSOF1, RIMS2, TM7SF4, DPYS, LRP12, ZFPM2, OXR1, ABRA, ANGPT1, RSPO2, EIF3S

V_0119_LC10711_Iafrate et al. (2004), V_0121_LC10727_Iafrate et al. (2004), V_0123_LC10906_Iafrate et al. (2004), V_0124_LC10922_Iafrate et al. (2004), V_2126_LC10727_Locke et al. (2006), V_4599_LC10697_Wong et al. (2007), V_4600_LC10722_Wong et al. (2007), V_4601_LC10727_Wong et al. (2007), V_4602_LC10727_Wong et al. (2007), V_4603_LC10727_Wong et al. (2007), V_4604_LC10727_Wong et al. (2007), V_4605_LC10727_Wong et al. (2007), V_4606_LC10731_Wong et al. (2007), V_4607_LC10749_Wong et al. (2007), V_4608_LC10811_Wong et al. (2007), V_4609_LC10877_Wong et al. (2007), V_4610_LC10912_Wong et al. (2007), V_4611_LC10941_Wong et al. (2007),

V_4791_LC10979_Wong et al. (2007)

q13.2-q24.3

Gains in 4 or more OCCC cell lines


9 38765151 70234204 RP11-73E13

RP11-211E19

51 31.46905 8 CNTNAP3, LOC642265, LOC727830, ZNF658, ZNF658B, ANKRD20A2, LOC158318, C9orf36, ANKRD20A1, ANKRD20A3, LOC441426, FOXD4L4, CBWD5, CBWD3, FOXD4L2,

FOXD4L3, PGM5

V_0742_LC11330_Sharp et al. (2005), V_0743_LC11344_Sharp et al. (2005), V_0744_LC11330_Sharp et al. (2005), V_0745_LC11330_Sharp et al. (2005), V_0746_LC11330_Sharp et al. (2005), V_0747_LC11330_Sharp et al. (2005), V_0748_LC11330_Sharp et al. (2005), V_0749_LC11330_Sharp et al. (2005), V_0750_LC11344_Sharp et al. (2005), V_0751_LC11344_Sharp et al. (2005), V_0752_LC11330_Sharp et al. (2005), V_0753_LC11344_Sharp et al. (2005), V_0754_LC11330_Sharp et al. (2005), V_0755_LC11330_Sharp et al. (2005), V_0756_LC11344_Sharp et al. (2005), V_0757_LC11344_Sharp et al. (2005), V_0758_LC11344_Sharp et al. (2005), V_0759_LC11344_Sharp et al. (2005), V_2128_LC11330_Locke et al. (2006), V_2129_LC11330_Locke et al. (2006), V_2131_LC11330_Locke et al. (2006), V_2132_LC11344_Locke et al. (2006), V_2133_LC11330_Locke et al. (2006), V_2134_LC11330_Locke et al. (2006), V_2135_LC11330_Locke et al. (2006), V_2136_LC11330_Locke et al. (2006), V_2137_LC11330_Locke et al. (2006), V_2138_LC11330_Locke et al. (2006), V_2139_LC11344_Locke et al. (2006), V_2140_LC11330_Locke et al. (2006),

p13.1-q13

9 74277754 74624800 RP11-584F8

RP11-61C22

4 0.347046 4 TMC1 q21.13

9 90481773 91124711 RP11-204A14

RP11-8C21

7 0.642938 4 C9orf47, EDG3, SHC3, CKS2, SECISBP2 q22.1-q22.2

9 1.17E+08 1.17E+08 RP11-472E10

RP11-56L10

3 0.44059 4 TNC q33.1

9 1.25E+08 1.26E+08 RP11-558L8

RP11-640N15

4 0.391794 4 DENND1A q33.2

10 4377403 5066472 RP11-441N20

RP11-195I21

5 0.689069 4 AKR1CL2, AKR1C1, AKR1C2 p15.1

10 7871129 11386923 RP11-309D20

RP11-413A22

28 3.515794 4 ATP5C1, FLJ45983, GATA3, LOC389936, CUGBP2 p14

10 50896102 64556968 RP11-802H4

RP11-671O12

126 13.66087 6 PARG, CTGLF5, CTGLF4, MSMB, NCOA4, TIMM23, CTGLF3, LOC387680, ASAH2, TMEM23, RP11-564C4.2, ACF, PRKG1, CSTF2T, DKK1, MBL2, PCDH15, ZWINT, IPMK,

C10orf70, UBE2D1, TFAM, BICC1, PHYHIPL, FAM13C1, SLC16A9, CCDC6, ANK3, CDC2, RHOBTB1, TMEM26, C10orf107, ARID5B, PLEKHK1, ZNF365, C10orf22, EGR2

V_2156_LC12305_Locke et al. (2006), V_4686_LC12298_Wong et al. (2007), V_4694_LC12333_Wong et al. (2007), V_4695_LC12340_Wong et al. (2007),

V_4696_LC12350_Wong et al. (2007)

q11.23-q21.2

10 65916163 69422391 RP11-757B19

RP11-654I24

42 3.506228 5 CTNNA3, LRRTM3, DNAJC12, SIRT1, HERC4 V_4700_LC12395_Wong et al. (2007), V_4701_LC12398_Wong et al. (2007) q21.3

10 76785576 78992927 RP11-735L1

RP11-619F23

22 2.207351 6 LOC439985, ZNF503, C10orf11, KCNMA1 V_0138_LC12468_Iafrate et al. (2004), V_4703_LC12451_Wong et al. (2007) q22.2-q22.3

10 82476510 1.02E+08 RP11-20E23

RP11-383K22

168 19.47552 6 NRG3, GHITM, C10orf99, PCDH21, LRRC22, LRRC21, KIAA1128, GRID1, WAPAL, OPN4, LDB3, BMPR1A, MMRN2, SNCG, C10orf116, GLUD1, FAM35A, MINPP1, PAPSS2, ATAD1, PTEN, C10orf59, LIPL1, LIPF, LIPL2, ANKRD22, STAMBPL1, ACTA2, FAS, CH25H, LIPA,

IFIT2, IFIT3, IFIT1L, IFIT1, IFIT5, SLC16A12, PANK1, MPHOSPH1, HTR7, RPP30, ANKRD1, PCGF5, HECTD2, PPP1R3C, TNKS2, FGFBP3, BTAF1, CPEB3, IDE, KIF11, HHEX, EXOC6,

CYP26C1, CYP26A1, FER1L3, CEP55, GPR120, RBP4, PDE6C, C10orf4, LGI1, TMEM20, PLCE1, NOC3L, HELLS, CYP2C18, CYP2C19, CYP2C9, CYP2C8, C10orf129, PDLIM1,

SORBS1, ALDH18A1, C10orf61, ENTPD1, C10orf130, CCNJ, ZNF518, BLNK, DNTT, TMEM10, TLL2, SMBP, PIK3AP1, LCOR, C10orf12, SLIT1, ARHGAP19, FRAT1, FRAT2,

KIAA0690, PGAM1, EXOSC1, ZDHHC16, MMS19L, UBTD1, ANKRD2, C10orf65, C10orf62, C10orf83, PI4KII, AVPI1, ZFYVE27, SFRP5, C10orf132, CRTAC1, C10orf28, LOXL4,

C10orf33, HPS1, HPSE2, CNNM1, GOT1, NKX2-3, SLC25A28, ENTPD7, COX15, CUTC, ABCC2, DNMBP, CPN1, SPFH1, CHUK

V_0762_LC12488_Sharp et al. (2005), V_2161_LC12488_Locke et al. (2006), V_4705_LC12506_Wong et al. (2007), V_4706_LC12521_Wong et al. (2007), V_4707_LC12530_Wong et al. (2007), V_4708_LC12531_Wong et al. (2007), V_4709_LC12564_Wong et al. (2007), V_4710_LC12569_Wong et al. (2007)

q23.1-q24.2

10 1.05E+08 1.29E+08 RP11-367M7

RP11-223P11

207 23.38638 6 SH3PXD2A, OBFC1, SLK, COL17A1, C10orf78, C10orf79, GSTO1, GSTO2, KIAA1754, C10orf80, SORCS3, SORCS1, XPNPEP1, ADD3, MXI1, SMNDC1, DUSP5, CSPG6, PDCD4,

SHOC2, ADRA2A, GPAM, TECTB, ACSL5, ZDHHC6, VTI1A, TCF7L2, HABP2, NRAP, CASP7, C10orf81, DCLRE1A, NHLRC2, ADRB1, C10orf118, TDRD1, VWA2, KIAA1914, ABLIM1, KIAA1600, TRUB1, ATRNL1, GFRA1, C10orf96, PNLIPRP3, PNLIP, PNLIPRP1, PNLIPRP2, C10orf82, HSPA12A, KIAA1598, VAX1, KCNK18, SLC18A2, PDZD8, EMX2,

RAB11FIP2, C10orf84, PRLHR, C10orf46, NANOS1, EIF3S10, FAM45A, FAM45B, SFXN4, PRDX3, GRK5, RGS10, TIAL1, BAG3, INPP5F, C10orf119, SEC23IP, PPAPDC1A, C10orf85,

BRWD2, FGFR2, ATE1, C10orf86, TACC2, C10orf87, PLEKHA1, HTRA1, DMBT1, C10orf120, CUZD1, FAM24B, FAM24A, C10orf88, C10orf89, IKZF5, ACADSB, HMX2, BUB3, GPR26, CPXM2, GALNAC4S-6ST, OAT, LHPP, FAM53B, LOC399818, KIAA0157, ZRANB1,

CTBP2, C10orf137, MMP21, UROS, BCCIP, DHX32, FANK1, ADAM12, C10orf90, LOC728158, DOCK1

V_0766_LC12664_Sharp et al. (2005), V_4712_LC12658_Wong et al. (2007), V_4713_LC12678_Wong et al. (2007), V_4714_LC12735_Wong et al. (2007),

V_4715_LC12747_Wong et al. (2007)

q24.33-q26.2

11 74858960 75504565 RP11-563L9

RP11-424G5

7 0.645605 4 GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG q13.4-q13.5

11 76080268 76414814 RP11-386K9

RP11-259H21

3 0.334546 4 LRRC54, PHCA q13.5

12 16595 6013605 RP13-492B24

RP11-58H19

57 5.99701 8 IQSEC3, SLC6A12, SLC6A13, JARID1A, CCDC77, B4GALNT3, NINJ2, WNK1, HSN2, RAD52, RAB6IP2, FBXL14, WNT5B, ADIPOR2, CACNA2D4, LRTM2, DCP1B, CACNA1C, FKBP4, ITFG2, NRIP2, FOXM1, C12orf32, TULP3, TEAD4, TSPAN9, PRMT8, MGC4266,

PARP11, CCND2, C12orf5, FGF23, FGF6, C12orf4, RAD51AP1, DYRK4, AKAP3, NDUFA9, GALNT8, KCNA6, KCNA1, KCNA5, NTF3, TMEM16B, VWF


p13.33-p13.31

12 8486385 31158927 RP11-561P12

RP11-294K14

219 22.67254 7 CLEC6A, CLEC4D, CLEC4E, AICDA, MFAP5, FAM80B, A2ML1, PHC1, M6PR, KLRG1, C12orf33, A2M, PZP, KLRB1, CLEC2D, DCAL1, CD69, KLRF1, CLEC2B, CLEC12A,

CLEC1B, CLEC12B, CLEC9A, CLEC1A, CLEC7A, OLR1, C12orf59, GABARAPL1, KLRD1, KLRK1, KLRC4, KLRC3, KLRC2, KLRC1, KLRA1, FLJ10292, STYK1, CSDA, TAS2R7, TAS2R8, TAS2R9, TAS2R10, PRR4, PRH1, TAS2R13, PRH2, TAS2R14, TAS2R50,

TAS2R49, TAS2R48, TAS2R44, TAS2R46, TAS2R43, T2R55, PRB3, PRB4, PRB1, PRB2, ETV6, BCL2L14, LRP6, MANSC1, LOH12CR1, DUSP16, CREBL2, GPR19, CDKN1B,

APOLD1, DDX47, GPRC5A, GPRC5D, HEBP1, KIAA1467, GSG1, EMP1, C12orf36, GRIN2B, ATF7IP, FLJ22662, GUCY2C, HIST4H4, H2AFJ, WBP11, C12orf60, LOC440087, ART4,

MGP, C12orf46, ARHGDIB, PDE6H, RERG, PTPRO, EPS8, STRAP, DERA, MGST1, LMO3, FLJ22655, PIK3C2G, PLCZ1, CAPZA3, PLEKHA5, AEBP2, PDE3A, SLCO1C1, SLCO1B3, LST-3TM12, SLCO1B1, SLCO1A2, IAPP, FLJ22028, RECQL, GOLT1B, C12orf39, GYS2, LDHB, KCNJ8, ABCC9, CMAS, ST8SIA1, KIAA0528, ETNK1, SOX5, FLJ32894, BCAT1, LRMP, CASC1, LYRM5, KRAS, FLJ36004, RASSF8, BHLHB3, SSPN, ITPR2, C12orf11,

FGFR1OP2, TM7SF3, SURB7, LOC728858, ST

V_0162_LC13887_Iafrate et al. (2004), V_0163_LC13898_Iafrate et al. (2004), V_4768_LC13827_Wong et al. (2007), V_4769_LC13838_Wong et al. (2007), V_4770_LC13869_Wong et al. (2007), V_4772_LC13891_Wong et al. (2007),

V_4773_LC13907_Wong et al. (2007)

p13.31-p11.21

12 32229775 47322951 RP11-768K13

RP11-683J24

140 15.09318 8 BICD1, FGD4, DNM1L, YARS2, PKP2, SYT10, ALG10, ALG10B, CPNE8, KIF21A, ABCD2, C12orf40, SLC2A13, LRRK2, CNTN1, PDZRN4, YAF2, ZCRB1, PPHLN1, PRICKLE1,

ADAMTS20, PUS7L, IRAK4, PTK9, TMEM117, NELL2, DBX2, PLEKHA9, TMEM16F, ARID2, SFRS2IP, SLC38A1, SLC38A2, SLC38A4, AMIGO2, FAM113B, FLJ21908, P11, RAPGEF3,

FLJ20489, HDAC7A, VDR, TMEM106C, COL2A1, SENP1, PFKM, ASB8, LOC387856, OR10AD1, H1FNT, ZNF641, ANP32D, C12orf54, OR8S1, LALBA

V_2170_LC13972_Locke et al. (2006), V_4775_LC13974_Wong et al. (2007), V_4776_LC14002_Wong et al. (2007)

p11.21-q13.11

12 49982872 51476774 RP11-24J24

RP11-563M1

17 1.493902 5 BIN2, ELA1, GALNT6, SLC4A8, SCN8A, LOC401720, ANKRD33, ACVRL1, ACVR1B, GRASP, NR4A1, C12orf44, KRT80, KRT7, KRTHB1, KRTHB6, KRTHB3, KRT85, KRTHB4,

KRTHB2, K6HF, KRT6B, KRT6C, KRT6A, KRT5, KRT6IRS, K6IRS4, K6IRS2, K6IRS3, KRT2A, KRT1, KRT1B, KRT76, KRT3

V_4778_LC14057_Wong et al. (2007) q13.13

12 53692814 54287319 RP11-318K1

RP11-222A15

5 0.594505 5 NEUROD4, OR9K2, OR10A7, OR6C74, OR6C6, OR6C1, OR6C3, OR6C75, OR6C65, OR6C76, OR6C2, OR6C70, OR6C68, OR6C4

V_4780_LC14080_Wong et al. (2007) q13.2

12 56618854 1.08E+08 RP11-549D7

CTD-2155D19

523 51.23464 9 XRCC6BP1, LRIG3, SLC16A7, FAM19A2, USP15, MON2, C12orf61, AVPR1A, DPY19L2, TMEM5, SRGAP1, FLJ32549, XPOT, TBK1, RASSF3, GNS, WIF1, LEMD3, MSRB3, HMGA2, C12orf31, TMBIM4, IRAK3, HELB, GRIP1, CAND1, DYRK2, IFNG, IL26, IL22, MDM1, RAP1B,

NUP107, SLC35E3, MDM2, CPM, CPSF6, LYZ, YEATS4, FRS2, CCT2, LRRC10, VMD2L3, RAB3IP, C12orf28, CNOT2, KCNMB4, PTPRB, PTPRR, TSPAN8, LGR5, PSRC2, THAP2,

TMEM19, RAB21, TBC1D15, TPH2, LOC283392, TRHDE, KCNC2, CAPS2, GLIPR1L1, MGC39497, GLIPR1, KRR1, PHLDA1, NAP1L1, BBS10, OSBPL8, ZDHHC17, CSRP2, E2F7,

NAV3, SYT1, PAWR, PPP1R12A, FLJ90579, MYF6, MYF5, LIN7A, FLJ21963, PPFIA2, CCDC59, C12orf26, TMTC2, SLC6A15, LRRIQ1, CART1, PAMCI, NTS, MGAT4C, C12orf50,

C12orf29, CEP290, TMTC3, KITLG, DUSP6, WDR51B, GALNT4, ATP2B1, C12orf12, DSPG3, KERA, LUM, DCN, BTG1, CLLU1OS, CLLU1, LOC338809, FLJ46688, EEA1, NUDT4,

UBE2N, MRPL42, SOCS2, CRADD, PLXNC1, CCDC41, TMCC3, NDUFA12, NR2C1, FGD6, VEZT, METAP2, USP44, NTN4, SNRPF, CCDC38, AMDHD1, HAL, LTA4H, ELK3, PCTK2,

C12orf63, NEDD1, TMPO, SLC25A3, IKIP, APAF1, ANKS1B, FAM71C, KIAA0701, GOLGA2L1, ACTR6, DEPDC4, SCYL2, SLC17A


V_4786_LC14380_Wong et al. (2007)

q14.1-q24.11

12 1.12E+08 1.16E+08 RP11-709L11

RP11-678H6

47 4.082855 6 RPH3A, OAS1, OAS3, OAS2, DTX1, RASAL1, DDX54, C12orf52, IQCD, TPCN1, SLC24A6, LOC196463, SDS, SDSL, LHX5, RBM19, TBX5, TBX3, THRAP2, FLJ42957, C12orf49,

TMEM118


12 1.16E+08 1.19E+08 RP11-286N17

RP11-778G11

42 2.99836 7 TMEM118, HRK, FBXW8, TESC, FBXO21, NOS1, KSR2, RFC5, WSB2, FLJ20674, PEBP1, TAOK3, SUDS3, KIAA1853, HSPB8, CCDC60, PRKAB1, CIT


12 1.22E+08 1.22E+08 RP11-197N18

RP11-649A11

4 0.321979 4 ABCB9, OGFOD2, ARL6IP4, PITPNM2, MPHOSPH9, C12orf65 V_4790_LC14504_Wong et al. (2007) q24.31

12 1.22E+08 1.32E+08 RP11-135O20

CTD-2140B24

92 10.05384 7 MPHOSPH9, C12orf65, CDK2AP1, SBNO1, SETD8, MGC7036, U1SNRNPBP, FLJ39378, TMED2, DDX55, EIF2B1, GTF2H3, C12orf38, ATP6V0A2, DNAH10, CCDC92, ZNF664,

FAM101A, NCOR2, SCARB1, UBC, DHX37, BRI3BP, AACS, TMEM132B, SLC15A4, GLT1D1, TMEM132D, FZD10, PIWIL1, RIMBP2, EPIM, RAN, GPR133, SFRS8, MMP17,

ULK1, PUS1, EP400, DDX51, NOC4L, GALNT9, P2RX2, POLE, PXMP2, PGAM5, GOLGA3, CHFR, ZNF605, ZNF26, ZNF84, ZNF140, ZNF10, ZNF268

V_0769_LC14595_Sharp et al. (2005), V_2172_LC14595_Locke et al. (2006), V_4404_LC14595_Wong et al. (2007), V_4792_LC14514_Wong et al. (2007), V_4793_LC14538_Wong et al. (2007), V_4794_LC14556_Wong et al. (2007), V_4795_LC14556_Wong et al. (2007), V_4796_LC14595_Wong et al. (2007)

q24.31-q24.33

14 18071243 19595839 RP11-404K10

CTD-2024K23

12 1.524596 7 OR11H12, POTE14, LOC440157, OR4Q3, OR4M1, OR4N2, OR4K2, OR4K5, OR4K1, OR4K15, OR4K14, OR4K13


V_0376_LC15340_Bejjani et al. (2005)

q11.1-q11.2

14 1.05E+08 1.06E+08 RP11-1087P8

CTD-2313E3

18 1.61671 4 JAG2, NUDT14, BRF1, BTBD6, PACS2, MTA1, CRIP2, CRIP1, C14orf80, TMEM121 V_0182_LC16055_Iafrate et al. (2004), V_0770_LC16055_Sharp et al. (2005), V_0771_LC16055_Sharp et al. (2005), V_0772_LC16055_Sharp et al. (2005), V_0773_LC16055_Sharp et al. (2005), V_0774_LC16055_Sharp et al. (2005), V_2176_LC16055_Locke et al. (2006), V_2177_LC16055_Locke et al. (2006), V_2178_LC16055_Locke et al. (2006), V_2179_LC16055_Locke et al. (2006), V_4849_LC16055_Wong et al. (2007), V_4850_LC16055_Wong et al. (2007), V_4851_LC16055_Wong et al. (2007), V_4852_LC16055_Wong et al. (2007), V_4853_LC16055_Wong et al. (2007), V_4854_LC16055_Wong et al. (2007), V_4855_LC16055_Wong et al. (2007), V_4856_LC16055_Wong et al. (2007), V_4857_LC16055_Wong et al. (2007), V_4858_LC16055_Wong et al. (2007), V_4859_LC16055_Wong et al. (2007), V_4860_LC16055_Wong et al. (2007),

V_0377_LC16055_Bejjani et al. (2005)

q32.33

17 21609201 22127824 RP11-797J12

RP11-399C2

6 0.518623 4 FAM27L V_4998_LC17406_Wong et al. (2007) p11.2-p11.1

17 22334005 23147784 RP11-1432H15

RP11-667H8

7 0.813779 4 WSB1, KSR1, LGALS9, NOS2A q11.1

17 28757686 71304889 RP11-660E6

RP13-898A12

485 42.5472 9 ACCN1, CCL2, CCL7, CCL11, CCL8, CCL13, CCL1, FLJ44815, TMEM132E, CCT6B, CCDC16, LIG3, RFFL, RAD51L3, FNDC8, NLE1, UNC45B, AMAC1, SLFN5, FLJ34922,

FLJ10260, SLFN13, PEX12, AP2B1, RASL10B, GAS2L2, C17orf50, MMP28, TAF15, C17orf66, CCL5, RDM1, LYZL6, CCL16, CCL14, CCL15, CCL23, CCL18, CCL3, CCL4,

CCL3L1, CCL3L3, CCL4L1, CCL4L2, TBC1D3C, LOC654341, ZNHIT3, MYOHD1, PIGW, ZNF403, MGC4172, MRM1, LHX1, AATF, ACACA, C17orf78, TADA2L, DUSP14, AP1GBP1,

DDX52, TCF2, TBC1D3B, TBC1D3, MRPL45, GPR179, SOCS7, SNIP, MLLT6, PCGF2, PSMB3, PIP5K2B, CCDC49, LOC388381, RPL23, LASP1, FBXO47, PLXDC1, CACNB1,

RPL19, STAC2, FBXL20, PPARBP, CRKRS, NEUROD2, PPP1R1B, STARD3, TCAP, PNMT, PERLD1, ERBB2, C17orf37, GRB7, ZNFN1A3, ZPBP2, GSDML, ORMDL3, GSDM1, PSMD3, CSF3, THRAP4, THRA, NR1D1, CASC3, RAPGEFL1, WIRE, CDC6, RARA, GJC1, TOP2A, IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28,

KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5,

KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2

V_0205_LC17492_Iafrate et al. (2004), V_0206_LC17502_Iafrate et al. (2004), V_0207_LC17522_Iafrate et al. (2004), V_0208_LC17538_Iafrate et al. (2004), V_0209_LC17565_Iafrate et al. (2004), V_0210_LC17626_Iafrate et al. (2004), V_0211_LC17666_Iafrate et al. (2004), V_0799_LC17457_Sharp et al. (2005), V_0800_LC17457_Sharp et al. (2005), V_0801_LC17522_Sharp et al. (2005), V_0802_LC17522_Sharp et al. (2005), V_0803_LC17522_Sharp et al. (2005), V_0804_LC17530_Sharp et al. (2005), V_0805_LC17601_Sharp et al. (2005), V_0806_LC17642_Sharp et al. (2005), V_2220_LC17457_Locke et al. (2006), V_2221_LC17457_Locke et al. (2006), V_2222_LC17457_Locke et al. (2006), V_2223_LC17457_Locke et al. (2006), V_2224_LC17457_Locke et al. (2006), V_2225_LC17522_Locke et al. (2006), V_2226_LC17522_Locke et al. (2006), V_2227_LC17522_Locke et al. (2006), V_2228_LC17522_Locke et al. (2006), V_2229_LC17530_Locke et al. (2006), V_2230_LC17608_Locke et al. (2006), V_2231_LC17631_Locke et al. (2006), V_2232_LC17640_Locke et al. (2006), V_4410_LC17595_Wong et al. (2007), V_5001_LC17457_Wong et al. (2007),

q11.2-q25.1

17 72841495 73688507 RP11-338A22

RP11-652L14

13 0.847012 4 FLJ45079, TNRC6C, TMC6, TMC8, SYNGR2, TK1 q25.2-q25.3

17 75254546 75605691 CTD-2116F7

RP11-712A9

4 0.351145 4 ENPP7, CBX2, CBX8, CBX4, TBC1D16 V_0213_LC17753_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_2234_LC17753_Locke et al. (2006)

q25.3

17 76165451 76474948 RP11-648F10

RP11-810O4

4 0.309497 4 KIAA1303 q25.3

18 17653 10627593 RP11-683L23

RP11-319J20

116 10.60994 4 USP14, THOC1, COLEC12, CETN1, CLUL1, C18orf56, TYMS, ENOSF1, YES1, ADCYAP1, METTL4, KNTC2, EMILIN2, LPIN2, MYOM1, MRCL3, MRLC2, TGIF, DLGAP1, FLJ35776, ZFP161, EPB41L3, TTMA, L3MBTL4, ARHGAP28, LAMA1, PTPRM, RAB12, KIAA0802,

NDUFV2, ANKRD12, TWSG1, RALBP1, PPP4R1, RAB31, TXNDC2, VAPA, APCDD1, NAPG

V_2236_LC17918_Locke et al. (2006), V_5044_LC17825_Wong et al. (2007), V_5045_LC17914_Wong et al. (2007)

p11.32-p11.22

18 13855315 15235838 RP11-715K10

RP11-11O7

11 1.380523 4 MC2R, ZNF519, MGC26718 V_5046_LC17976_Wong et al. (2007) p11.21

19 33507712 45499391 RP11-719O4

RP11-688J23

140 11.99168 5 UQCRFS1, POP4, PLEKHF1, C19orf12, CCNE1, C19orf2, ZNF536, TSHZ3, ZNF507, MGC35440, DPY19L3, PDCD5, ANKRD27, RGS9BP, ECAT8, SLC7A9, FLJ14640, C19orf40, RHPN2, GPATC1, LOC126248, LRP3, SLC7A10, CEBPA, CEBPG, PEPD, CHST8, KCTD15, LSM14A, KIAA0355, GPI, MGC13096, UBA2, WTIP, LOC284402, ZNF302, ZNF181, ZNF599,

ZNF30, ZNF792, GRAMD1A, SCN1B, HPN, FXYD3, LGI4, FXYD1, FXYD7, FXYD5, FLJ25660, LSR, USF2, HAMP, MAG, CD22, FFAR1, FFAR3, GPR42, FFAR2, UNQ467,

ZD52F10, SBSN, GAPDHS, NIFIE14, ATP4A, MGC10433, ETV2, COX6B1, UPK1A, ZBTB32, MLL4, TMEM149, U2AF1L4, PSENEN, F25965, HSPB6, LOC148137, SNX26, PRODH2,

NPHS1, KIRREL2, APLP1, TA-NFKBH, HCST, TYROBP, LRFN3, LOC644096, FLJ36445, ALKBH6, CLIPR-59, THAP8, WDR62, POLR2I, CKAP1, CAPNS1, COX7A1, ZNF565,

ZNF146, KIAA1559, ZNF545, ZNF566, ZFP260, ZNF529, ZNF382, GIOT-1, ZNF567, ZNF790, ZNF345, DKFZp779O175, ZNF568, ZNF420, ZNF585A, ZNF585B, ZNF383, HKR1, ZNF569,

ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3, DPF1, PPP1R14A, SPINT2, LOC541469, C19orf33, YIF1B, KCNK6, C19orf15, PSMD8, GGN,

SPRED3, FAM98C, RASGRP4, RYR1, MAP4K

V_5097_LC18975_Wong et al. (2007), V_5098_LC18976_Wong et al. (2007), V_5099_LC18991_Wong et al. (2007)

q12-q13.2

19 49078420 49934259 RP11-780K18

RP11-390O2

7 0.855839 4 ZNF45, ZNF221, ZNF155, ZNF230, ZNF222, ZNF223, ZNF284, ZNF224, ZNF225, ZNF234, ZNF226, ZNF227, ZNF233, ZNF235, ZNF228, ZNF285A, ZNF229, ZNF180, PVR,

CEACAM19, CEACAM16

V_0221_LC19039_Iafrate et al. (2004), V_2245_LC19036_Locke et al. (2006) q13.31

19 60850445 61136858 RP11-772P23

RP11-368B18

3 0.286413 4 HSU79303, U2AF2, EPN1, NALP9, NLRP11, NALP4, NALP13 q13.42

20 37210 2199529 CTD-2506E2

RP11-327I13

20 2.162319 4 DEFB126, DEFB127, DEFB128, DEFB129, DEFB32, C20orf96, ZCCHC3, SOX12, C20orf98, TRIB3, RBCK1, TBC1D20, CSNK2A1, TCF15, SRXN1, SCRT2, C20orf54, C20orf55,

ANGPT4, RSPO4, PSMF1, C20orf46, SNPH, SDCBP2, FKBP1A, NSFL1C, SIRPD, SIRPB1, SIRPG, SIRPA, PDYN, STK35

V_2249_LC19199_Locke et al. (2006), V_2250_LC19207_Locke et al. (2006), V_5120_LC19207_Wong et al. (2007)

p13

20 3287544 22642531 RP11-722M22

RP11-473J15

173 19.35499 5 ATRN, GFRA4, ADAM33, SIGLEC1, HSPA12B, C20orf27, C20orf28, CENPB, CDC25B, C20orf29, VISA, PANK2, RNF24, SMOX, ADRA1D, PRNP, PRND, PRNT, RASSF2,

SLC23A2, C20orf30, PCNA, CDS2, PROKR2, KIAA1434, FLJ25067, CHGB, CGI-09, MCM8, C20orf155, C20orf75, C20orf42, BMP2, HAO1, TXNDC13, PLCB1, PLCB4, C20orf103, PAK7,

ANKRD5, SNAP25, MKKS, C20orf94, JAG1, BTBD3, SPTLC2L, TASP1, C20orf6, C20orf7, FLRT3, C20orf133, C20orf23, SNRPB2, OTOR, PCSK2, BFSP1, DSTN, RRBP1, C20orf179,

SNX5, C20orf72, OVOL2, CSRP2BP, ZNF133, MGC44328, C20orf12, POLR3F, RBBP9, SEC23B, DTD1, C20orf79, SLC24A3, RIN2, NAT5, CRNKL1, C20orf26, INSM1, C20orf74,

C20orf19, XRN2, NKX2-2, PAX1, FOXA2

V_0224_LC19418_Iafrate et al. (2004), V_5122_LC19294_Wong et al. (2007), V_5123_LC19298_Wong et al. (2007), V_5124_LC19312_Wong et al. (2007), V_5125_LC19365_Wong et al. (2007), V_5126_LC19402_Wong et al. (2007), V_5127_LC19406_Wong et al. (2007), V_5128_LC19494_Wong et al. (2007)

p13-p11.21

20 35702902 44008890 CTD-2320I12

RP11-103O9

75 8.305988 6 FLJ42133, CTNNBL1, C20orf102, KIAA0406, C20orf77, TGM2, KIAA1755, BPI, LBP, KIAA1219, SMAF1, SLC32A1, ACTR5, PPP1R16B, FAM83D, DHX35, MAFB, TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6, PTPRT, SFRS6, L3MBTL, SGK2, IFT52, MYBL2, FAM112A,

C20orf100, JPH2, C20orf111, GDAP1L1, C20orf142, R3HDML, HNF4A, C20orf121, SERINC3, PKIG, ADA, WISP2, KCNK15, RIMS4, YWHAB, TOMM34, STK4, KCNS1, WFDC5, WFDC12, PI3, SEMG1, SEMG2, SLPI, MATN4, RBPSUHL, SDC4, C20orf35, C20orf10, DBNDD2, PIGT, WFDC2, WFDC6, SPINLW1, WFDC8, WFDC9, WFDC10A, WFDC11, WFDC10B, WFDC13,

SPINT4, WFDC3, DNTTIP1, UBE2C, TNNC2, C20orf161, SNX21, ACOT8, ZSWIM3, ZSWIM1, C20orf165, NEURL2, CTSA, PLTP, C20orf67


q11.23-q13.12

20 44086132 62434349 RP11-373A15

RP11-350G15

163 18.34822 10 SLC12A5, NCOA5, CD40, CDH22, SLC35C2, ELMO2, ZNF334, SLC13A3, TP53RK, SLC2A10, EYA2, PRKCBP1, NCOA3, SULF2, PREX1, ARFGEF2, CSE1L, STAU1, DDX27, ZNFX1, KCNB1, PTGIS, B4GALT5, SLC9A8, SPATA2, ZNF313, SNAI1, Kua-UEV, UBE2V1,

Kua, CEBPB, LOC284751, PTPN1, C20orf175, PARD6B, BCAS4, ADNP, DPM1, MOCS3, KCNG1, NFATC2, ATP9A, SALL4, ZFP64, TSHZ2, ZNF217, BCAS1, CYP24A1, PFDN4,

DOK5, CBLN4, MC3R, C20orf108, AURKA, CSTF1, C20orf32, C20orf43, C20orf106, LOC388799, TFAP2C, BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1,

TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2, PPP1R3D,

C20orf177, CDH26, FLJ33860, LOC284757, CDH4, TAF4, LSM14B, PSMA7, SS18L1, GTPBP5, HRH3, OSBPL2, ADRM1, LAMA5, RPS21, CABLES2, C20orf151, GATA5,

FLJ30313, C20orf166, SLCO4A1, NTSR1, C20orf20, OGFR, COL9A3, TCFL5, DIDO1, C20orf11, C20orf59, BHLHB4, YTHDF1, BIRC7, C20orf58, ARFGAP1, COL20A1, CHRNA4, KCNQ2, EEF1A2, C20orf149, PTK6, SRMS, C20orf195, PRIC285, GMEB2, STMN3, RTEL1,

TNFRSF6B, ARFRP1, ZGPAT, LIME1, SLC2A4

V_0226_LC19822_Iafrate et al. (2004), V_2251_LC19741_Locke et al. (2006), V_2252_LC19985_Locke et al. (2006), V_5139_LC19754_Wong et al. (2007), V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007), V_5142_LC19835_Wong et al. (2007), V_5143_LC19835_Wong et al. (2007), V_5144_LC19966_Wong et al. (2007), V_5145_LC19985_Wong et al. (2007), V_5146_LC19985_Wong et al. (2007), V_5147_LC19985_Wong et al. (2007), V_5148_LC19985_Wong et al. (2007), V_5149_LC19985_Wong et al. (2007),

V_5150_LC19985_Wong et al. (2007)

q13.12-q13.33

22 14440103 14836998 CTD-2177M20

RP11-532J16

6 0.396895 6 ACTBL1, OR11H1 V_0813_LC20342_Sharp et al. (2005), V_2257_LC20342_Locke et al. (2006), V_4821_LC20342_Wong et al. (2007), V_5164_LC20342_Wong et al. (2007), V_5165_LC20342_Wong et al. (2007), V_5166_LC20342_Wong et al. (2007)

q11.1

chrom start end start.bac end.bac BACs length MB No. of Cell Lines genes mirnas acgh.cnvs cytobands

1 1622658 19778614 RP11-730K14

RP11-800L4

173 18.15596 7 CDC2L1, CDC2L2, SLC35E2, NADK, GNB1, CALML6, TMEM52, LOC339457, KIAA1751, GABRD, PRKCZ, C1orf86, SKI, MORN1, RER1, PEX10, PLCH2, PANK4, HES5, TNFRSF14, C1orf93, MMEL1, ACTRT2, PRDM16, ARHGEF16, MEGF6, FAM79A, WDR8, TP73, KIAA0495, CCDC27, LRRC47, KIAA0562, DFFB, C1orf174, AJAP1, NPHP4, KCNAB2, CHD5, RPL22, RNF207, ICMT, HES3, GPR153, ACOT7, HES2, ESPN, TNFRSF25, PLEKHG5, NOL9, TAS1R1, HKR3, KLHL21, PHF13, THAP3, DNAJC11, CAMTA1, VAMP3, PER3, UTS2, TNFRSF9, PARK7, ERRFI1, SLC45A1, RERE, ENO1, CA6, SLC2A7, SLC2A5, GPR157, H6PD, SPSB1, BMSC-MCP, RP13-15M17.2, PIK3CD, LOC644997, CLSTN1, CTNNBIP1, LZIC, NMNAT1, RBP7, UBE4B, KIF1B, PGD, APITD1, CORT, DFFA, PEX14, CASZ1, C1orf127, TARDBP, MASP2, SRM, EXOSC10, FRAP1, ANGPTL7, UBIAD1, FBXO2, FBXO44, FBXO6, MAD2L2, C1orf187, AGTRAP, MTHFR, CLCN6, NPPA, NPPB, KIAA2013, PLOD1, MFN2, IIP45, TNFRSF8, TNFRSF1B, VPS13D, DHRS3, LOC343066, C1orf158, PRAMEF12, PRAMEF1, HNRPCL1, PRAMEF2, PRAMEF4, PRAMEF10, PRAMEF3, PRAMEF5, PRAMEF6, PRAMEF16, PRAMEF8, PRAMEF7, PRAMEF9, PDPN, PRDM2, KIAA1026, FLJ43806, TMEM51, EFHD2, CTRC, ELA2A, ELA2B, CASP9, DNAJC16, AGMAT,

V_0002_LC0028_Iafrate et al. (2004), V_0003_LC0126_Iafrate et al. (2004), V_0004_LC0152_Iafrate et al. (2004), V_0005_LC0177_Iafrate et al. (2004), V_0676_LC0150_Sharp et al. (2005), V_0677_LC0152_Sharp et al. (2005), V_0679_LC0177_Sharp et al. (2005), V_2042_LC0028_Locke et al. (2006), V_2044_LC0177_Locke et al. (2006), V_4192_LC0040_Wong et al. (2007), V_4193_LC0040_Wong et al. (2007), V_4194_LC0040_Wong et al. (2007), V_4195_LC0040_Wong et al. (2007), V_4196_LC0040_Wong et al. (2007), V_4197_LC0040_Wong et al. (2007), V_4198_LC0097_Wong et al. (2007), V_4199_LC0100_Wong et al. (2007), V_4200_LC0104_Wong et al. (2007), V_4201_LC0106_Wong et al. (2007), V_4202_LC0106_Wong et al. (2007), V_4203_LC0113_Wong et al. (2007), V_4204_LC0118_Wong et al. (2007), V_4205_LC0141_Wong et al. (2007), V_4206_LC0165_Wong et al. (2007), V_4207_LC0177_Wong et al. (2007), V_4208_LC0177_Wong et al. (2007), V_4209_LC0177_Wong et al. (2007), V_4210_LC0177_Wong et al. (2007), V_4211_LC0177_Wong et al. (2007), V_4212_LC0177_Wong et al. (2007),

p36.33-p36.13

1 30827347 31297195 RP11-294J15

RP11-638H12

3 0.469848 4 MATN1, LAPTM5, SDC3, PUM1 p35.2

Losses in 4 or more OCCC cell lines


2 2.06E+08 2.43E+08 RP11-58D11

RP11-1159G17

383 36.51896 6 NRP2, FLJ20309, NDUFS1, EEF1B2, GPR1, ADAM23, MDH1B, KIAA0971, CPO, KLF7, CREB1, LOC151194, FLJ40432, FZD5, LOC389072, CRYGD, CRYGC, CRYGB, CRYGA, IDH1, PIP5K3, PTHR2, MAP2, C2orf21, RPE, FLJ23861, ACADL, MYL1, LANCL1, CPS1, ERBB4, IKZF2, SPAG16, LOC402117, BARD1, ABCA12, ATIC, FN1, MREG, PECR, LOC92691, XRCC5, SMARCAL1, RPL37A, IGFBP2, IGFBP5, TNP1, TNS1, FLJ46536, IL8RB, IL8RA, ARPC2, GPBAR1, AAMP, PNKD, TMBIM1, MGC50811, SLC11A1, CTDSP1, VIL1, USP37, RQCD1, PLCD4, ZNF142, BCS1L, RNF25, STK36, TTLL4, CYP27A1, PRKAG3, WNT6, WNT10A, CDK5R2, FEV, CRYBA2, DKFZp434O052, IHH, XLF, SLC23A3, C2orf24, C2orf17, ZFAND2B, ABCB6, ATG9A, ANKZF1, GLB1L, STK16, TUBA1, DNAJB2, PTPRN, RESP18, DNPEP, DES, GMPPA, ACCN4, CHPF, MGC99813, OBSL1, INHA, STK11IP, SLC4A3, EPHA4, PAX3, FLJ32447, SGPP2, FARSLB, MOGAT1, ACSL3, KCNE4, SCG2, AP1S3, WDFY1, MRPL44, SERPINE2, FLJ22746, CUL3, DOCK10, IRS1, RHBDD1, COL4A4, COL4A3, C2orf33, TM4SF20, HRB, DKFZp547H025, SLC19A3, CCL20, WDR69, FLJ20701, DNER, TRIP12, FBXO36, SLC16A14, SP110, SP140, LOC93349, SP100, CAB39, ITM2C, GPR55, PSMD1, HTR2B, ARMC9, B3GNT7, NCL, MGC43122, NMUR1, MGC35154, PTMA, P

V_0030_LC2686_Iafrate et al. (2004), V_0031_LC2814_Iafrate et al. (2004), V_0032_LC2814_Iafrate et al. (2004), V_0694_LC2814_Sharp et al. (2005), V_4324_LC2633_Wong et al. (2007), V_4325_LC2638_Wong et al. (2007), V_4326_LC2650_Wong et al. (2007), V_4328_LC2702_Wong et al. (2007), V_4329_LC2749_Wong et al. (2007), V_4330_LC2814_Wong et al. (2007), V_4331_LC2814_Wong et al. (2007)

q33.3-q37.3

4 39105 1.21E+08 RP11-335H3

RP11-708G15

970 120.5866 8 ZNF595, ZNF718, ZNF141, ZNF721, PIGG, PDE6B, ATP5I, MYL5, MFSD7, PCGF3, CPLX1, GAK, MGC4618, DGKQ, IDUA, SLC26A1, FGFRL1, LOC285498, SPON2, CTBP1, MGC21675, MAEA, KIAA1530, FLJ34443, FAM53A, SLBP, TMEM129, TACC3, FGFR3, LETM1, WHSC1, WHSC2, FLJ37478, POLN, C4orf15, MXD4, ZFYVE28, RNF4, C4orf8, TNIP2, SH3BP2, ADD1, TETRAN, C4orf9, GRK4, HD, LOC345222, RGS12, HGFAC, C4orf25, LRPAP1, ADRA2C, OTOP1, TMEM128, LYAR, ZNF509, D4S234E, STX18, MSX1, CYTL1, STK32B, C4orf6, EVC2, EVC, CRMP1, FLJ46481, JAKMIP1, WFS1, PPP2R2C, MAN2B2, MRFAP1, S100P, MRFAP1L1, CNO, KIAA0232, TBC1D14, CCDC96, GRPEL1, SORCS2, PSAPL1, AFAP1, ABLIM2, SH3TC1, HTRA3, ACOX3, FLJ35725, FLJ45966, GPR78, CPZ, DEFB131, LOC650293, DRD5, SLC2A9, WDR1, KIAA1729, MIST, HS3ST1, RAB28, BAPX1, FAM44A, CPEB2, C1QTNF7, KIAA1345, FBXL5, BST1, CD38, FGFBP1, KSP37, PROM1, TAPT1, LDB2, QDPR, LAP3, MED28, FLJ20280, HCAP-G, LCORL, SLIT2, MGC29898, KCNIP4, GPR125, GBA3, PPARGC1A, DHX15, SOD3, DKFZp761B107, LGI2, SLA/LP, PI4K2B, ANAPC4, SLC34A2, KIAA0746, RBPSUH, CCKAR, TBC1D19, STIM2, FLJ45721, PCDH7, CENTD1, FLJ11017, RELL1, PGM2, TBC1D1, PTTG2, KLF3, TLR10, TLR

V_0045_LC4542_Iafrate et al. (2004), V_0047_LC5166_Iafrate et al. (2004), V_0048_LC5301_Iafrate et al. (2004), V_0049_LC5396_Iafrate et al. (2004), V_0130_LC4464_Iafrate et al. (2004), V_0698_LC4236_Sharp et al. (2005), V_0699_LC4236_Sharp et al. (2005), V_0700_LC4677_Sharp et al. (2005), V_0701_LC4909_Sharp et al. (2005), V_2066_LC4068_Locke et al. (2006), V_2067_LC4192_Locke et al. (2006), V_2068_LC4236_Locke et al. (2006), V_2069_LC4236_Locke et al. (2006), V_2070_LC4236_Locke et al. (2006), V_2071_LC4709_Locke et al. (2006), V_2072_LC4898_Locke et al. (2006), V_2073_LC4909_Locke et al. (2006), V_4371_LC4159_Wong et al. (2007), V_4372_LC4159_Wong et al. (2007), V_4373_LC4228_Wong et al. (2007), V_4374_LC4228_Wong et al. (2007), V_4375_LC4231_Wong et al. (2007), V_4376_LC4234_Wong et al. (2007), V_4377_LC4236_Wong et al. (2007), V_4378_LC4236_Wong et al. (2007), V_4379_LC4291_Wong et al. (2007), V_4380_LC4361_Wong et al. (2007), V_4381_LC4395_Wong et al. (2007), V_4382_LC4395_Wong et al. (2007), V_4383_LC4429_Wong et al. (2007),

p16.3-q27

4 1.21E+08 1.35E+08 RP11-700N1

RP11-29M9

97 13.66053 5 MAD2L1, PRDM5, FLJ23191, TNIP3, GPR103, ANXA5, TMEM155, EXOSC9, CCNA2, BBS7, TRPC3, Tenr, IL2, IL21, FLJ35630, FGF2, NUDT6, SPATA5, SPRY1, ANKRD50, FAT4, PDZD6, SLC25A31, HSPA4L, PLK4, MGC33302, FLJ21106, LARP2, PGRMC2, PHF17, FLJ30655, LOC132321, PCDH10

V_0050_LC5522_Iafrate et al. (2004), V_4412_LC5587_Wong et al. (2007), V_4413_LC5596_Wong et al. (2007), V_4414_LC5605_Wong et al. (2007), V_4415_LC5607_Wong et al. (2007)

q27-q28.3

4 1.35E+08 1.6E+08 RP11-619K10

RP11-789K9

209 25.17071 6 PCDH18, SLC7A11, CCRN4L, ELF2, OSAP, NDUFC1, NARG1, RAB33B, SETD7, MGST2, MAML3, SCOC, CLGN, ELMOD2, UCP1, TBC1D9, RNF150, ZNF330, IL15, INPP4B, USP38, GAB1, SMARCA5, LOC441046, GYPE, GYPB, GYPA, HHIP, ANAPC10, ABCE1, OTUD4, SMAD1, MMAA, LOC646603, LOC152485, LSM6, SLC10A7, C4orf13, POU4F2, NYD-SP14, EDNRA, TMEM34, LOC90826, ARHGAP10, NR3C2, DCAMKL2, LRBA, MAB21L2, RPS3A, SH3D19, ESSPL, PET112L, FBXW7, FLJ32028, TIGD4, ARFIP1, KIAA1727, TRIM2, MND1, KIAA0922, TLR2, RNF175, SFRP2, DCHS2, PLRG1, FGB, FGA, FGG, LRAT, MGC27016, NPY2R, ASAP, GUCY1A3, GUCY1B3, ACCN5, TDO2, CTSO, PDGFC, GLRB, GRIA2, C4orf18, TMEM144, RXFP1, LOC201725, ETFDH, PPID, FLJ25371

V_0051_LC5838_Iafrate et al. (2004), V_2074_LC5743_Locke et al. (2006), V_2075_LC5743_Locke et al. (2006), V_2076_LC5743_Locke et al. (2006), V_4416_LC5654_Wong et al. (2007), V_4417_LC5675_Wong et al. (2007), V_4418_LC5696_Wong et al. (2007), V_4419_LC5731_Wong et al. (2007), V_4420_LC5892_Wong et al. (2007)

q28.3-q32.1

4 1.6E+08 1.61E+08 RP11-620C21

RP11-113D11

3 0.594838 4 FLJ25371 V_4420_LC5892_Wong et al. (2007) q32.1

4 1.62E+08 1.63E+08 RP11-47B1

RP11-470O4

4 0.556767 4 FSTL5 q32.2

4 1.64E+08 1.91E+08 RP11-12G4

CTD-2011O21

236 26.85162 7 LOC92345, NPY1R, NPY5R, TKTL2, FLJ11184, ANP32C, TRIM61, FLJ31659, TRIM60, FLJ38482, KLHL2, SC4MOL, CPE, TLL1, SPOCK3, ANXA10, FLJ20035, PALLD, CBR4, SH3RF1, NEK1, CLCN3, FLJ20534, MFAP3L, AADAT, GALNT17, GALNT7, HMGB2, SAP30, SCRG1, HAND2, MORF4, FBXO8, KIAA1712, HPGD, GLRA3, ADAM29, GPM6A, WDR17, SPATA4, ASB5, SPCS3, VEGFC, NEIL3, AGA, ODZ3, DCTD, FLJ30277, WWC2, CDKN2AIP, ING2, RWDD4A, FLJ12716, STOX2, ENPP6, IRF2, CASP3, FLJ33167, MLF1IP, ACSL1, HELT, SLC25A4, SNX25, LRP2BP, ANKRD37, FLJ11200, CCDC110, PDLIM3, SORBS2, TLR3, DKFZP564J102, CYP4V2, KLKB1, F11, MTNR1A, FAT, ZFP42, FLJ25801, FLJ36180, FRG1

V_0054_LC6039_Iafrate et al. (2004), V_0057_LC6244_Iafrate et al. (2004), V_0702_LC6244_Sharp et al. (2005), V_0703_LC6244_Sharp et al. (2005), V_4421_LC5999_Wong et al. (2007), V_4422_LC6154_Wong et al. (2007), V_4423_LC6218_Wong et al. (2007), V_4424_LC6244_Wong et al. (2007), V_4425_LC6244_Wong et al. (2007), V_4426_LC6244_Wong et al. (2007)

q32.2-q35.2

5 10820282 11908939 RP11-647O21

RP11-408F7

20 1.088657 4 CTNND2 V_2082_LC6572_Locke et al. (2006) p15.2

5 14056885 16968719 RP11-744A15

RP11-90B23

32 2.911834 4 TRIO, FAM105A, FAM105B, ANKH, FBXL7, ZNF622, FLJ20152, MYO10 p15.2-p15.1

6 1.64E+08 1.65E+08 RP11-788I6

RP11-347L18

10 0.997743 4 QKI V_4516_LC9028_Wong et al. (2007) q26-q27

6 1.65E+08 1.71E+08 RP11-637D24

RP11-113J6

49 5.619662 5 C6orf118, PDE10A, LOC441177, T, MGC35308, SFT2D1, BRP44L, RPS6KA2, RNASET2, FGFR1OP, CCR6, GPR31, UNC93A, TTLL2, TCP10, LOC401286, LOC653483, MLLT4, KIF25, FRMD1, DACT2, SMOC2, THBS2, WDR27, C6orf120, PHF10, TCTE3, C6orf70, C6orf122, C6orf208, DLL1, KIAA1838, PSMB1, TBP, PDCD2

V_2098_LC9057_Locke et al. (2006), V_4518_LC9057_Wong et al. (2007) q27

7 65178475 68640661 RP11-763P10

RP11-790K18

35 3.462186 4 ASL, RCP9, TPST1, LOC285908, KCTD7, RABGEF1, FLJ10099, SBDS, RSAFD1 V_2102_LC9561_Locke et al. (2006) q11.21-q11.22

7 69412500 74293398 RP11-180J15

RP11-567F24

71 4.880898 4 AUTS2, WBSCR17, CALN1, LOC441251, POM121, NSUN5C, TRIM50C, FKBP6, LOC442582, LOC389517, NSUN5, TRIM50A, FZD9, BAZ1B, BCL7B, TBL2, MLXIPL, VPS37D, WBSCR18, WBSCR22, STX1A, ABHD11, CLDN3, CLDN4, WBSCR27, WBSCR28, ELN, LIMK1, WBSCR1, LAT2, RFC2, CYLN2, GTF2IRD1, WBSCR23, GTF2I, NCF1, GTF2IRD2, PMS2L5, WBSCR16, GTF2IRD2B

V_2103_LC9597_Locke et al. (2006), V_4541_LC9597_Wong et al. (2007), V_4542_LC9602_Wong et al. (2007), V_4543_LC9606_Wong et al. (2007), V_4544_LC9609_Wong et al. (2007)

q11.22-q11.23

7 99511524 1.02E+08 RP11-494B20

RP11-694M1

28 2.762908 4 ZNF3, COPS6, MCM7, AP4M1, TAF6, MGC40499, LOC255374, LOC389541, FLJ10925, GAL3ST4, GPC2, STAG3, GATS, MGC2463, MGC57359, PILRB, PILRA, ZCWPW1, BCDIN3, C7orf47, LOC402573, TSC22D4, FLJ37538, HRBL, LRCH4, FBXO24, PCOLCE, MOSPD3, TFR2, ACTL6B, GNB2, PERQ1, POP7, EPO, ZAN, EPHB4, SLC12A9, TRIP6, ARS2, LOC402682, ACHE, MUC17, TRIM56, SERPINE1, AP1S1, VGF, FLJ39237, MOGAT3, PLOD3, ZNHIT1, CLDN15, FIS1, RABL5, EMID2, MYLC2PL, CUTL1, SH2B2, PRKRIP1, C7orf19, ALKBH4, DKFZp434K181, POLR2J, MGC119295, POLR2J3, RASA4, POLR2J2, MGC35361, FBXL13

V_0107_LC9766_Iafrate et al. (2004), V_0724_LC9769_Sharp et al. (2005), V_2104_LC9753_Locke et al. (2006), V_2105_LC9769_Locke et al. (2006), V_2106_LC9769_Locke et al. (2006), V_4549_LC9755_Wong et al. (2007), V_4550_LC9756_Wong et al. (2007), V_4551_LC9756_Wong et al. (2007), V_4552_LC9762_Wong et al. (2007), V_4553_LC9769_Wong et al. (2007)

q22.1

8 29004 12980751 RP11-130K11

RP11-520F7

116 12.95175 6 OR4F21, ZNF596, FBXO25, C8orf42, LOC389607, ERICH1, DLGAP2, CLN8, C8orf61, ARHGEF10, KBTBD11, MYOM2, CSMD1, MCPH1, ANGPT2, AGPAT5, XKR5, DEFB1, DEFA6, DEFA4, DEFA1, LOC653600, DEFA3, DEFA5, PJCG6, DEFB104A, DEFB104B, DEFB107A, DEFB107B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, SPAG11, SPAG11A, DEFB103B, DEFB103A, DEFB4, DEFB109, CLDN23, MFHAS1, THEX1, PPP1R3B, TNKS, MSRA, UNQ9391, RP1L1, C8orf74, SOX7, PINX1, XKR6, C8orf15, MTMR9, AMAC1L2, C8orf13, BLK, GATA4, C8orf49, NEIL2, FDFT1, CTSB, DEFB137, DEFB136, DEFB134, DUB3, FAM86B1, DEFB130, LOC440053, LONRF1, C8orf79, KIAA1456

V_0731_LC10225_Sharp et al. (2005), V_0732_LC10225_Sharp et al. (2005), V_0733_LC10380_Sharp et al. (2005), V_0734_LC10380_Sharp et al. (2005), V_0735_LC10380_Sharp et al. (2005), V_0736_LC10380_Sharp et al. (2005), V_0737_LC10380_Sharp et al. (2005), V_0738_LC10380_Sharp et al. (2005), V_0739_LC10380_Sharp et al. (2005), V_0740_LC10408_Sharp et al. (2005), V_2112_LC10225_Locke et al. (2006), V_2113_LC10225_Locke et al. (2006), V_2114_LC10380_Locke et al. (2006), V_2115_LC10380_Locke et al. (2006), V_2116_LC10380_Locke et al. (2006), V_2117_LC10380_Locke et al. (2006), V_2118_LC10380_Locke et al. (2006), V_2119_LC10380_Locke et al. (2006), V_2120_LC10408_Locke et al. (2006), V_2121_LC10408_Locke et al. (2006), V_4276_LC10225_Wong et al. (2007), V_4575_LC10225_Wong et al. (2007), V_4576_LC10225_Wong et al. (2007), V_4577_LC10380_Wong et al. (2007), V_4578_LC10380_Wong et al. (2007), V_4579_LC10380_Wong et al. (2007), V_4580_LC10380_Wong et al. (2007), V_4581_LC10380_Wong et al. (2007), V_4582_LC10408_Wong et al. (2007), V_4583_LC10408_Wong et al. (2007),

p23.3-p22

8 20539810 22241498 RP11-426L23

RP11-13A10

19 1.701688 4 GFRA2, DOK2, XPO7, NPM2, FGF17, EPB49, RAI16, NUDT18, HR, REEP4, LGI3, SFTPC, BMP1, PHYHIP, POLR3D, PIWIL2

V_2124_LC10461_Locke et al. (2006), V_2125_LC10461_Locke et al. (2006), V_4586_LC10461_Wong et al. (2007)

p21.3

9 29028933 29287757 RP11-262O11

RP11-607P10

3 0.258824 4 p21.1

9 1.01E+08 1.09E+08 RP11-734K7

RP11-214G2

73 7.782079 5 TGFBR1, ALG2, SEC61B, NR4A3, STX17, TXNDC4, INVS, TEX10, C9orf30, TMEFF1, LOC347273, PRG-3, BAAT, MRPL50, ZNF189, ALDOB, C9orf125, RNF20, GRIN3A, PPP3R2, CYLC2, SMC2, OR13F1, OR13C4, OR13C3, OR13C8, OR13C5, OR13C2, OR13C9, OR13D1, NIPSNAP3A, NIPSNAP3B, ABCA1, SLC44A1, FSD1L, FCMD, TAL2, TMEM38B, ZNF462


q22.33-q31.2

9 1.26E+08 1.27E+08 RP11-140H11

RP11-346B17

14 1.290286 4 DENND1A, LHX2, NEK6, PSMB7, NR5A1, NR6A1, OLFML2A, LOC401551, RPL35, ARPC5L, GOLGA1, C9orf126

q33.2-q33.3

9 1.31E+08 1.31E+08 RP11-671K14

RP11-474N7

4 0.52965 4 ENDOG, C9orf114, CCBL1, LRRC8A, PHYHD1, TMEM15, NUP188, SH3GLB2, FAM73B, DOLPP1, CRAT, PPP2R4, IER5L, C9orf106

q34.11

9 1.31E+08 1.33E+08 RP11-5J2 RP11-723C24

15 1.586294 4 PRRX2, PTGES, TOR1B, TOR1A, C9orf78, USP20, FNBP1, GPR107, FLJ46836, FREQ, ASS1, FUBP3, PRDM12, EXOSC2, ABL1, P518, FIBCD1, LAMC3, C9orf58, NUP214

q34.11-q34.13

11 30310028 36714019 RP11-147M9

RP11-465C16

77 6.403991 4 C11orf46, MPPED2, DCDC5, DCDC1, ZCSL3, IMMP1L, ELP4, PAX6, RCN1, WT1, WIT1, hfl-B5, CCDC73, PRRG4, QSER1, DEPDC7, TCP11L1, CSTF3, HIPK3, C11orf69, CD59, FBXO3, LMO2, GPIAP1, NAT10, ABTB2, CAT, ELF5, EHF, APIP, PDHX, CD44, SLC1A2, DKFZP586H212, FJX1, TRIM44, LDLRAD3, C11orf55, COMMD9, FLJ14213, TRAF6, RAG1, RAG2, C11orf74

V_4733_LC13087_Wong et al. (2007), V_4734_LC13090_Wong et al. (2007), V_4735_LC13093_Wong et al. (2007), V_4736_LC13107_Wong et al. (2007), V_4737_LC13107_Wong et al. (2007)

p14.1-p12

11 60103197 61524883 RP11-743C17

RP11-61G16

17 1.421686 4 MS4A8B, MGC35295, MS4A10, CCDC86, GPR44, ZP1, PRPF19, TMEM109, TMEM132A, SLC15A3, CD6, CD5, VPS37C, PGA3, PGA4, PGA5, VWCE, DDB1, DAK, CYBASC3, TMEM138, MGC13379, FLJ12529, FLJ20487, C11orf66, SYT7, C11orf11, C11orf9, C11orf10, FEN1, FADS1, FADS2, FADS3, RAB3IL1, VMD2, FTH1, LOC399900


11 62116800 63004402 RP11-831H9

RP11-603J21

6 0.887602 4 MTA2, EML3, ROM1, B3GAT3, GANAB, INTS5, C11orf48, LOC751071, LOC790955, LOC51035, LOC221091, BSCL2, GNG3, HNRPUL2, TTC9C, ZBTB3, POLR2G, TAF6L, LOC374395, MGC3196, NXF1, STX5, WDR74, SLC3A2, CHRM1, SLC22A6, SLC22A8, MGC34821, LOC387601, SLC22A10, SLC22A9, HRASLS5

V_0150_LC13257_Iafrate et al. (2004), V_4749_LC13256_Wong et al. (2007) q12.3

11 67001000 70580986 RP11-428E19

CTD-2505C3

36 3.579986 5 AIP, PITPNM1, CDK2AP2, CABP2, GSTP1, C11orf72, NDUFV1, NUDT8, TBX10, ACY3, ALDH3B2, UNC93B1, ALDH3B1, NDUFS8, TCIRG1, CHKA, SUV420H1, C11orf24, LRP5, SAPS3, GAL, MTL5, CPT1A, MRPL21, IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76

V_2169_LC13288_Locke et al. (2006), V_4755_LC13316_Wong et al. (2007) q13.1-q13.3

11 77419227 88311943 RP11-757N22

RP11-257H22

87 10.89272 8 THRSP, NDUFC2, ALG8, LOC283219, GAB2, NARS2, MGC33846, PRCP, FLJ25416, RAB30, PCF11, ANKRD42, MDS025, DLG2, TMEM126B, TMEM126A, ZF, CCDC89, SYTL2, CCDC83, PICALM, EED, C11orf73, CCDC81, ME3, PRSS23, FZD4, TMEM135, RAB38, CTSC, GRM5

V_0151_LC13373_Iafrate et al. (2004), V_0152_LC13403_Iafrate et al. (2004), V_0777_LC13377_Sharp et al. (2005), V_2184_LC13377_Locke et al. (2006), V_4727_LC13373_Wong et al. (2007), V_4757_LC13394_Wong et al. (2007)

q14.1-q14.3

11 95451287 95827973 RP11-111I14

RP11-588K5

6 0.376686 4 MAML2, CCDC82, JRKL V_0154_LC13475_Iafrate et al. (2004) q21

11 96346455 96833884 RP11-410D1

RP11-346I21

6 0.487429 4 q21-q22.1

11 97158039 97534210 RP11-577H6

RP11-240L24

5 0.376171 4 V_4760_LC13485_Wong et al. (2007) q22.1

11 1.04E+08 1.08E+08 RP11-179B7

CTD-2130J18

36 4.612666 4 CASP4, CASP5, CASP1, COP1, INCA, ICEBERG, GRIA4, KIAA1826, KBTBD3, AASDHPPT, GUCY1A2, CWF19L2, ALKBH8, ELMOD1, LOC643923, SLN, SLC35F2, RAB39, CUL5, ACAT1, NPAT, ATM, C11orf65, KDELC2, EXPH5, DDX10

V_0156_LC13530_Iafrate et al. (2004), V_4761_LC13567_Wong et al. (2007) q22.3

11 1.09E+08 1.34E+08 RP11-554C11

CTD-2220K2

240 25.89528 7 LOC399947, RDX, FDX1, ARHGAP20, C11orf53, FLJ45803, POU2AF1, BTG4, FLJ46266, LAYN, SNF1LK2, PPP2R1B, ALG9, C11orf1, CRYAB, HSPB2, C11orf52, DIXDC1, DLAT, PIH1D2, C11orf57, TIMM8B, SDHD, IL18, TEX12, BCDO2, PTS, NCAM1, TTC12, ANKK1, DRD2, TMPRSS5, ZW10, USP28, HTR3B, HTR3A, ZBTB16, NNMT, C11orf71, RBM7, REXO2, FAM55A, FAM55D, FAM55B, IGSF4, BUD13, ZNF259, APOA5, APOA4, APOC3, APOA1, KIAA0999, PAFAH1B2, SIDT2, TAGLN, PCSK7, DKFZp547C195, BACE1, CEP164, DSCAML1, FXYD2, FXYD6, TMPRSS13, IL10RA, TMPRSS4, SCN4B, SCN2B, AMICA1, LOC196264, EVA1, CD3E, CD3D, CD3G, UBE4A, ATP5L, MLL, FLJ11783, LOC143941, TMEM25, C11orf60, ARCN1, PHLDB1, TREH, DDX6, BLR1, BCL9L, UPK2, FOXR1, CCDC84, RPS25, TRAPPC4, SLC37A4, HYOU1, VPS11, HMBS, H2AFX, DPAGT1, TMEM24, MIZF, ABCG4, NOD9, PDZD3, LOC283152, CBL, MCAM, RNF26, C1QTNF5, MFRP, USP2, THY1, PVRL1, TRIM29, OAF, POU2F3, TMEM136, ARHGEF12, GRIK4, LRRC35, TECTA, SC5DL, SORL1, BRCC2, STS-1, CRTAM, C11orf63, HSPA8, ASAM, GRAMD1B, SCN3B, ZNF202, OR6X1, OR6M1, PMP22CD, OR8D4, OR4D5, OR6T1, OR10S1, OR10G4, OR10G9, OR10G8, OR10G7, LOH11CR2A, OR8G2, OR8G1, OR8G5, OR8D1, OR8D2, OR8B2, OR8B3

V_0158_LC13592_Iafrate et al. (2004), V_0159_LC13605_Iafrate et al. (2004), V_4763_LC13589_Wong et al. (2007), V_4764_LC13705_Wong et al. (2007), V_5037_LC13656_Wong et al. (2007)

q22.3-q25

13 17918020 1.14E+08 RP11-77P19

RP11-228M6

811 96.19917 8 TUBA2, TPTE2, HSMPP8, PSPC1, ZMYM5, ZNF198, GJA3, GJB2, GJB6, CRYL1, IFT88, IL17D, LOC221143, XPO4, LATS2, SAP18, C13orf3, MRP63, ZDHHC20, EFHA1, FGF9, SGCG, SACS, TNFRSF19, MIPEP, PCOTH, LOC387911, SPATA13, MGC48915, PARP4, ATP12A, RNF17, CENPJ, PABPC3, FLJ25477, MTMR6, NUPL1, ATP8A2, TMEM46, RNF6, CDK8, WASF3, GPR12, USP12, RPL21, RASL11A, MTIF3, LNX2, MGC9850, POLR1D, GSH1, PDX1, CDX2, FLT3, PAN3, FLT1, POMP, SLC46A3, KIAA0774, SLC7A1, UBL3, KATNAL1, HMGB1, USPL1, ALOX5AP, FLJ14834, MGC40178, HSPH1, B3GTL, RXFP2, FRY, BRCA2, CG018, PFAAP5, APRIN, KL, STARD13, RFC3, NBEA, MAB21L1, DCAMKL1, SOHLH2, SPG20, CCNA1, LOC400120, RFXAP, SMAD9, ALG5, EXOSC8, FAM48A, CSNK1A1L, POSTN, TRPC4, UFM1, FREM2, STOML3, C13orf23, LOC387921, LHFP, COG6, FOXO1A, MRPS31, SLC25A15, ELF1, WBP4, KBTBD6, KBTBD7, MTRF1, NARG1L, RGC32, KIAA0564, DGKH, AKAP11, TNFSF11, FLJ40919, EPSTI1, DNAJC15, PIG38, FLJ31846, FLJ38725, C13orf21, TSC22D1, NUFIP1, KIAA1704, GTF2F2, KCTD4, TPT1, SLC25A30, COG3, SPERT, LOC283514, ZC3H13, CPB2, LCP1, C13orf18, LRCH1, ESD, HTR2A, SUCLA2, NUDT15, MED4, ITM2B, RB1, P2RY5, RCBTB2, CYSLTR2, FNDC3A, MLNR

V_0167_LC14662_Iafrate et al. (2004), V_0168_LC14853_Iafrate et al. (2004), V_0169_LC14892_Iafrate et al. (2004), V_0170_LC14945_Iafrate et al. (2004), V_0171_LC15037_Iafrate et al. (2004), V_0172_LC15055_Iafrate et al. (2004), V_2173_LC14935_Locke et al. (2006), V_4480_LC14964_Wong et al. (2007), V_4797_LC14674_Wong et al. (2007), V_4798_LC14797_Wong et al. (2007), V_4799_LC14805_Wong et al. (2007), V_4800_LC14821_Wong et al. (2007), V_4801_LC14824_Wong et al. (2007), V_4802_LC14832_Wong et al. (2007), V_4803_LC14849_Wong et al. (2007), V_4804_LC14867_Wong et al. (2007), V_4805_LC14892_Wong et al. (2007), V_4806_LC14911_Wong et al. (2007), V_4807_LC14925_Wong et al. (2007), V_4808_LC14946_Wong et al. (2007), V_4809_LC14956_Wong et al. (2007), V_4810_LC14976_Wong et al. (2007), V_4811_LC14979_Wong et al. (2007), V_4812_LC15022_Wong et al. (2007), V_4813_LC15063_Wong et al. (2007), V_4814_LC15122_Wong et al. (2007), V_4815_LC15123_Wong et al. (2007), V_4816_LC15155_Wong et al. (2007), V_4817_LC15210_Wong et al. (2007), V_4818_LC15212_Wong et al. (2007),

q11-q34

15 18898414 19133581 RP11-403L7

RP11-552D3

3 0.235167 5 LOC283755 V_4865_LC16090_Wong et al. (2007), V_4866_LC16090_Wong et al. (2007), V_4867_LC16090_Wong et al. (2007)

q11.2

15 19970520 66193127 RP13-515J11

RP11-290C13

417 46.22261 7 TUBGCP5, CYFIP1, NIPA2, NIPA1, WHDC1L1, GOLGA8E, MKRN3, NDN, C15orf2, SNRPN, SNURF, UBE3A, ATP10A, GABRB3, GABRA5, GABRG3, OCA2, HERC2, GOLGA8G, FLJ32679, LOC440248, APBA2, NDNL2, TJP1, CHRFAM7A, FAM7A2, KIAA1018, MTMR10, TRPM1, KLF13, OTUD7, CHRNA7, ARHGAP11A, SCG5, C15orf45, GREM1, RYR3, AVEN, CHRM5, C15orf24, PGBD4, C15orf29, TMEM85, SLC12A6, NOLA3, NUT, AGPAT7, GOLGA8A, GOLGA8B, CX36, ACTC1, AQR, FLJ20582, ATPBD4, C15orf41, MEIS2, TMCO5, SPRED1, FAM98B, RASGRP1, FLJ35695, FLJ39531, THBS1, FSIP1, GPR176, EIF2AK4, SRP14, BMF, BUB1B, PAK6, FLJ38596, PLCB2, FLJ43339, DISP2, C15orf23, IVD, BAHD1, D4ST1, CCDC32, RPUSD2, CASC5, RAD51, FAM82C, GCHFR, DNAJC17, ZFYVE19, PPP1R14D, SPINT1, RHOV, VPS18, DLL4, CHAC1, INOC1, EXDL1, CHP, OIP5, NUSAP1, NDUFAF1, RTF1, ITPKA, LTK, RPAP1, TYRO3, MGA, MAPKBP1, PLA2G4B, SPTBN5, EHD4, PLA2G4E, PLA2G4D, PLA2G4F, VPS39, TMEM87A, GANC, CAPN3, ZFP106, SNAP23, LRRC57, CEP27, CDAN1, TTBK2, UBR1, TMEM62, CCNDBP1, EPB42, TGM5, TGM7, LCMT2, ADAL, ZNF690, 76P, TP53BP1, MAP1A, HISPPD2A, CKMT1B, STRC, CATSPER2, CKMT1A, PDIA3, ELL3, SERF2, SERINC4, HYPK, MFAP1, WDR76, FRMD5, CAS

V_0183_LC16121_Iafrate et al. (2004), V_0185_LC16139_Iafrate et al. (2004), V_0186_LC16139_Iafrate et al. (2004), V_0187_LC16139_Iafrate et al. (2004), V_0188_LC16238_Iafrate et al. (2004), V_0778_LC16139_Sharp et al. (2005), V_0779_LC16139_Sharp et al. (2005), V_0780_LC16139_Sharp et al. (2005), V_0781_LC16139_Sharp et al. (2005), V_0782_LC16139_Sharp et al. (2005), V_0783_LC16139_Sharp et al. (2005), V_0784_LC16139_Sharp et al. (2005), V_0785_LC16202_Sharp et al. (2005), V_0786_LC16331_Sharp et al. (2005), V_2182_LC16090_Locke et al. (2006), V_2183_LC16090_Locke et al. (2006), V_2185_LC16139_Locke et al. (2006), V_2186_LC16139_Locke et al. (2006), V_2187_LC16139_Locke et al. (2006), V_2188_LC16139_Locke et al. (2006), V_2189_LC16139_Locke et al. (2006), V_2190_LC16139_Locke et al. (2006), V_2191_LC16139_Locke et al. (2006), V_2192_LC16139_Locke et al. (2006), V_2193_LC16139_Locke et al. (2006), V_4873_LC16090_Wong et al. (2007), V_4874_LC16090_Wong et al. (2007), V_4875_LC16090_Wong et al. (2007), V_4876_LC16139_Wong et al. (2007), V_4877_LC16090_Wong et al. (2007),

q11.2-q23

15 67942185 68651700 RP11-58G17

RP11-96C21

5 0.709515 4 TLE3 V_4904_LC16360_Wong et al. (2007) q23

15 69491309 93031016 RP11-640P17

RP11-165G14

196 23.53971 5 THSD4, NR2E3, MYO9A, SENP8, GRAMD2, PKM2, PARP6, BRUNOL6, HEXA, FLJ27523, ARIH1, GOLGA, BBS4, ADPGK, NEO1, HCN4, LOC283677, NPTN, CD276, LOC388135, TBC1D21, LOXL1, STOML1, PML, GOLGA6, ISLR2, ISLR, STRA6, CCDC33, CYP11A1, SEMA7A, UBL7, ARID3B, CLK3, LSM16, CYP1A1, CYP1A2, CSK, LMAN1L, CPLX3, SCAMP2, MPI, C15orf17, COX5A, RPP25, SCAMP5, PPCDC, C15orf39, COMMD4, NEIL1, MAN2C1, SIN3A, PTPN9, SNUPN, IMP3, SH3PX3, CSPG4, ODF3L1, UBE2Q2, FBXO22, NRG4, C15orf27, ETFA, ISL2, ZNF291, RCN2, PSTPIP1, TSPAN3, HMG20A, LRRN6A, TBC1D2B, CIB2, IDH3A, ACSBG1, DNAJA4, WDR61, CRABP1, IREB2, LOC123688, PSMA4, CHRNA5, CHRNA3, CHRNB4, ADAMTS7, MORF4L1, CTSH, RASGRF1, TMED3, KIAA1024, MTHFS, C15orf37, BCL2A1, ZA20D3, FAH, ARNT2, KIAA1199, MESDC2, MESDC1, C15orf26, IL16, STARD5, TMC3, RKHD3, EFTUD1, DKFZp666G057, FLJ22795, RPS17, CPEB1, AP3B2, FSD2, WHDC1, HOMER2, FAM103A1, C15orf40, BTBD1, TM6SF1, HDGFRP3, BNC1, SH3GL3, ADAMTSL3, KIAA1920, ZSCAN2, WDR73, NMB, SEC11L1, ZNF592, ALPK3, SLC28A1, PDE8A, AKAP13, KLHL25, FLJ32310, NTRK3, MRPL46, MRPS11, DET1, ISG20L1, ISG20, ACAN, HAPLN3, MFGE8, ABHD2, RLBP1, KIAA1794, POLG

V_0189_LC16389_Iafrate et al. (2004), V_0190_LC16450_Iafrate et al. (2004), V_0787_LC16438_Sharp et al. (2005), V_0788_LC16450_Sharp et al. (2005), V_0789_LC16450_Sharp et al. (2005), V_0790_LC16456_Sharp et al. (2005), V_0791_LC16456_Sharp et al. (2005), V_0792_LC16456_Sharp et al. (2005), V_2195_LC16389_Locke et al. (2006), V_2196_LC16398_Locke et al. (2006), V_2197_LC16450_Locke et al. (2006), V_2198_LC16456_Locke et al. (2006), V_2199_LC16456_Locke et al. (2006), V_2200_LC16456_Locke et al. (2006), V_4905_LC16412_Wong et al. (2007), V_4906_LC16417_Wong et al. (2007), V_4907_LC16456_Wong et al. (2007), V_4908_LC16467_Wong et al. (2007), V_4909_LC16491_Wong et al. (2007), V_4910_LC16491_Wong et al. (2007)

q23-q26.2

15 95806678 98847164 RP11-306B2

RP11-168G16

25 3.040486 4 ARRDC4, FLJ39743, IGF1R, DMN, TTC23, LRRC28, MEF2A, LYSMD4, LOC400464, ADAMTS17, FLJ42289, LASS3


16 2491719 2754990 RP11-20I23

RP11-598P9

3 0.263271 4 KIAA1171, ATP6V0C, AMDHD2, CP-23, PDPK1, LOC283874, KCTD5, PRSS27, SRRM2 V_4918_LC16593_Wong et al. (2007), V_4919_LC16593_Wong et al. (2007) p13.3

16 23463610 25034827 RP11-495E13

RP11-620P1

13 1.571217 4 EARS2, KIAA1970, UBPH, NDUFAB1, PALB2, DCTN5, PLK1, ERN2, LOC63928, PRKCB1, CACNG3, RBBP6, FLJ45256, TNRC6A, SLC5A11, ARHGAP17, LCMT1

V_4935_LC16781_Wong et al. (2007) p12.1

16 45058798 69356635 RP11-46D6

RP11-309L8

280 24.29784 5 FLJ43980, SHCBP1, VPS35, ORC6L, MLCK, LOC388272, GPT2, DNAJA2, NETO2, ITFG1, PHKB, ABCC12, ABCC11, LONPL, SIAH1, N4BP1, CBLN1, MGC33367, ZNF423, C16orf69, FLJ20718, PAPD5, ADCY7, BRD7, NKD1, SLIC1, CARD15, CYLD, SALL1, TNRC9, CHD9, RBL2, FTS, KIAA1005, FTO, IRX3, IRX5, IRX6, MMP2, AYTL1, CAPNS2, SLC6A2, CES1, CES7, GNAO1, AMFR, NUDT21, OGFOD1, BBS2, MT4, MT3, MT2A, MT1E, MT1M, MT1A, MT1B, MT1F, MT1G, MT1H, MTE, MT1X, NUP93, SLC12A3, HERPUD1, CETP, NOD27, CPNE2, NIP30, RSPRY1, ARL2BP, TM4SF11, CCL22, CX3CL1, CCL17, CIAPIN1, COQ9, POLR2C, DOK4, MGC10992, GPR114, GPR56, GPR97, CCDC135, KATNB1, KIFC3, CNGB1, TEPP, ZNF319, C16orf57, MMP15, GTL3, CSNK2A2, HSPC065, Klkbl4, FLJ13912, NDRG4, SETD6, CNOT1, FLJ10815, GOT2, CDH8, CDH11, CDH5, TK2, CKLF, CMTM1, CMTM2, CMTM3, CMTM4, DYNC1LI2, APPBP1, CA7, PDP2, CDH16, RRAD, FAM96B, CES2, FLJ21736, FLJ37464, CBFB, LIN10, MGC4655, TRADD, FBXL8, HSF4, NOL3, LOC653319, LOC283849, E2F4, ELMO3, LRRC29, HSPC171, FHOD1, SLC9A5, PLEKHG4, LRRC36, CGI-38, ZDHHC1, HSD11B2, ATP6V0D1, AGRP, FAM65A, CTCF, RLTPR, ACD, PARD6A, C16orf48, LOC388284, MGC11335, RANBP10, TSNAXIP1, CENPT, THAP11, NUTF

V_0198_LC16863_Iafrate et al. (2004), V_0797_LC16959_Sharp et al. (2005), V_2216_LC16959_Locke et al. (2006), V_4954_LC16857_Wong et al. (2007), V_4955_LC16867_Wong et al. (2007), V_4956_LC16873_Wong et al. (2007), V_4957_LC16881_Wong et al. (2007), V_4958_LC16891_Wong et al. (2007), V_4959_LC16914_Wong et al. (2007), V_4960_LC16916_Wong et al. (2007), V_4961_LC16934_Wong et al. (2007), V_4962_LC16939_Wong et al. (2007), V_4963_LC16959_Wong et al. (2007), V_4964_LC16959_Wong et al. (2007), V_4965_LC16963_Wong et al. (2007)

q11.2-q22.1

16 69727407 79158537 RP11-204A24

RP11-41E5

125 9.43113 7 HYDIN, FLJ11171, CALB2, ZNF23, ZNF19, CHST4, TAT, MARVELD3, PHLPPL, AP1G1, LOC55565, KIAA0174, DHODH, HP, HPR, TXNL4B, DHX38, PMFBP1, ATBF1, PSMD7, LOC440348, LOC348174, LOC497190, GLG1, RFWD3, MLKL, FA2H, WDR59, ZNRF1, LDHD, ZFP1, CTRB2, CTRB1, BCAR1, CFDP1, LOC124491, CHST6, CHST5, FLJ22167, GABARAPL2, ADAT1, KARS, TERF2IP, CNTNAP4, MON1B, ADAMTS18, KIAA1576, CLEC3A, WWOX, MAF, DYNLRB2

V_0678_LC16967_Sharp et al. (2005), V_2043_LC16967_Locke et al. (2006), V_4966_LC16982_Wong et al. (2007), V_4967_LC16985_Wong et al. (2007), V_4968_LC17023_Wong et al. (2007)

q22.2-q23.2

16 80745852 88686715 RP11-689K21

RP11-665E3

102 7.940863 6 MPHOSPH6, CDH13, HSBP1, MLYCD, OSGIN1, EFCBP2, LOC146167, MBTPS1, HSDL1, LRRC50, TAF1C, LOC161931, KCNG4, WFDC1, ATP2C2, KIAA1609, COTL1, C16orf44, USP10, CRISPLD2, ZDHHC7, KIAA0513, FAM92B, KIAA0182, Pfs2, MGC17624, COX4NB, COX4I1, IRF8, FOXF1, MTHFSD, FOXC2, FOXL1, FBXO31, MAP1LC3B, ZCCHC14, JPH3, KLHDC4, SLC7A5, CA5A, BANP, ZFPM1, FLJ45530, NHN1, IL17C, CYBA, MVD, SNAI3, RNF166, LOC348180, FAM38A, FLJ45121, FLJ40448, CDT1, APRT, GALNS, TRAPPC2L, LOC390748, CBFA2T3, LOC197322, CDH15, ANKRD11, SPG7, RPL13, CPNE7, DPEP1, CHMP1A, PCOLN3, C16orf55, CDK10, MGC26885, C16orf7, ZNF276, FANCA, SPIRE2, NULP1, MC1R, TUBB3, FLJ20186, MGC16385, DBNDD1, MGC3101, GAS8, C16orf3, PRDM7

V_0199_LC17071_Iafrate et al. (2004), V_0200_LC17076_Iafrate et al. (2004), V_4969_LC17043_Wong et al. (2007), V_4970_LC17076_Wong et al. (2007), V_4971_LC17076_Wong et al. (2007), V_4972_LC17076_Wong et al. (2007), V_4973_LC17076_Wong et al. (2007), V_4974_LC17076_Wong et al. (2007), V_4975_LC17076_Wong et al. (2007), V_4976_LC17076_Wong et al. (2007), V_4977_LC17076_Wong et al. (2007), V_4978_LC17076_Wong et al. (2007)

q23.3-q24.3

17 52192 11165806 CTD-2326F1

RP11-466J1

121 11.11361 5 RPH3AL, LOC400566, FAM101B, VPS53, FAM57A, GEMIN4, C17orf25, RNMTL1, NXN, TIMM22, ABR, TUSC5, YWHAE, CRK, MYO1C, SKIP, PITPNA, SLC43A2, SCARF1, RILP, PRPF8, MGC14376, WDR81, SERPINF2, SERPINF1, SMYD4, RPA1, RTN4RL1, DPH1, OVCA2, HIC1, SMG6, SRR, TSR1, RUTBC1, MNT, LOC284009, METT10D, PAFAH1B1, KIAA0664, GARNL4, OR1D4, OR1D5, OR1D2, OR1G1, OR1A2, OR1A1, OR3A2, OR3A1, OR3A4, OR1E1, OR3A3, OR1E2, SPATA22, ASPA, TRPV3, TRPV1, CARKL, CTNS, TAX1BP3, TMEM93, P2RX5, ITGAE, GSG2, C17orf85, CAMKK1, P2RX1, ATP2A3, ZZEF1, CYB5D2, ANKFY1, UBE2G1, MGC29671, MYBBP1A, GGT6, FLJ42461, ALOX15, PELP1, ARRB2, MED11, CXCL16, ZMYND15, TM4SF5, VMO1, LOC388323, PSMB6, PLD2, MINK1, CHRNE, GP1BA, SLC25A11, RNF167, PFN1, ENO3, SPAG7, CAMTA2, INCA1, KIF1C, GPR172B, ZFP3, ZNF232, USP6, UNQ5783, RABEP1, NUP88, RPAIN, RIP, C1QBP, DHX33, DERL2, MIS12, NLRP1, KIAA0523, AIPL1, FAM64A, PITPNM3, KIAA0753, TXNL5, MED31, SLC13A5, BIRC4BP, FBXO39, TEKT1, ALOX12, MGC71993, C17orf49, BCL6B, SLC16A13, SLC16A11, CLEC10A, ASGR2, ASGR1, DLG4, ACADVL, DVL2, PHF23, GABARAP, DULLARD, C17orf81, CLDN7, SLC2A4, YBX2, EIF5A, GPS2, KIAA1787, CENTB1, KCTD11, T

V_2217_LC17259_Locke et al. (2006), V_4979_LC17159_Wong et al. (2007), V_4980_LC17159_Wong et al. (2007), V_4981_LC17250_Wong et al. (2007), V_4982_LC17265_Wong et al. (2007), V_4983_LC17269_Wong et al. (2007), V_4984_LC17276_Wong et al. (2007), V_4985_LC17280_Wong et al. (2007), V_4986_LC17280_Wong et al. (2007), V_4987_LC17280_Wong et al. (2007), V_4988_LC17315_Wong et al. (2007), V_4989_LC17333_Wong et al. (2007)

p13.3-p13.1

17 16296920 16800264 RP11-485H17

RP11-655O21

5 0.503344 4 C17orf76, ZNF287, ZNF624, TNFRSF13B p11.2

17 17534724 18197609 CTD-2502C3

RP13-706D19

8 0.662885 4 RAI1, SREBF1, TOM1L2, LRRC48, ATPAF2, C17orf39, DRG2, MYO15A, ALKBH5, LLGL1, FLII, SMCR7, TOP3A, SMCR8, SHMT1

p11.2

17 18287247 19916725 RP11-667E24

RP11-1301G3

18 1.629478 4 LOC654346, LOC220594, FLJ36492, FLJ40244, TRIM70, FBXW10, FAM18B, PRPSAP2, SLC5A10, FAM83G, GRAP, EPN2, EPPB9, MAPK7, MFAP4, ZNF179, FLJ10847, ALDH3A2, FLJ31196, ALDH3A1, ULK2, AKAP10

V_2219_LC17388_Locke et al. (2006), V_4992_LC17388_Wong et al. (2007), V_4993_LC17390_Wong et al. (2007), V_4994_LC17394_Wong et al. (2007)

p11.2

17 73999930 75033343 CTD-2280G9

RP11-105G17

10 1.033413 4 DNAHL1, PSCD1, USP36, TIMP2, LGALS3BP, CANT1, C1QTNF1, FLJ21865, HRNBP3, LOC146713

V_0212_LC17741_Iafrate et al. (2004), V_0807_LC17750_Sharp et al. (2005), V_2233_LC17750_Locke et al. (2006), V_5034_LC17743_Wong et al. (2007), V_5035_LC17750_Wong et al. (2007)

q25.3

17 76165451 76402137 RP11-648F10

RP11-810D12

3 0.236686 4 KIAA1303 q25.3


18 18925680 76098439 RP11-424I13

RP11-565D23

539 57.17276 9 CABLES1, C18orf45, RIOK3, C18orf8, NPC1, ANKRD29, LAMA3, C18orf17, CABYR, OSBPL1A, IMPACT, HRH4, ZNF521, SS18, PSMA8, KCTD1, AQP4, CHST9, CDH2, DSC3, DSC2, DSC1, DSG1, DSG4, DSG3, DSG2, TTR, B4GALT6, MCART2, KIAA1012, RNF125, RNF138, MEP1B, FAM59A, KLHL14, C18orf34, NOL4, DTNA, MAPRE2, ZNF397, ZNF271, ZNF24, ZNF396, C18orf37, GALNT1, C18orf21, P15RS, SLC39A6, STATIP1, MOCOS, FHOD3, C18orf10, KIAA1328, BRUNOL4, PIK3C3, RIT2, SYT4, SETBP1, SLC14A2, SLC14A1, CD33L3, KIAA1632, PSTPIP2, ATP5A1, CCDC5, C18orf25, RNF165, LOXHD1, ST8SIA5, PIAS2, KATNAL2, TCEB3C, TCEB3B, HDHD2, IER3IP1, SMAD2, ZBTB7C, KIAA0427, SMAD7, DYM, LOC497661, RPL17, LIPG, ACAA2, MYO5B, CCDC11, MBD1, CXXC1, C18orf24, MAPK4, MRO, ME2, ELAC1, SMAD4, RKHD2, DCC, MBD2, POLI, STARD6, C18orf54, C18orf26, RAB27B, CCDC68, TCF4, FLJ45743, TXNL1, WDR7, ST8SIA3, ONECUT2, FECH, NARS, ATP8B1, NEDD4L, HAK, MALT1, ZNF532, SEC11C, GRP, RAX, CPLX4, LMAN1, CCBE1, PMAIP1, MC4R, CDH20, RNF152, PIGN, KIAA1468, TNFRSF11A, ZCCHC2, PHLPP, BCL2, FVT1, VPS4B, SERPINB5, SERPINB12, SERPINB13, SERPINB4, SERPINB3, SERPINB11, SERPINB7, SERPINB2, SERPINB10, SERPINB8, CDH7

V_0216_LC18106_Iafrate et al. (2004), V_0217_LC18181_Iafrate et al. (2004), V_0218_LC18301_Iafrate et al. (2004), V_5047_LC18053_Wong et al. (2007), V_5048_LC18073_Wong et al. (2007), V_5049_LC18082_Wong et al. (2007), V_5050_LC18106_Wong et al. (2007), V_5052_LC18144_Wong et al. (2007), V_5053_LC18156_Wong et al. (2007), V_5054_LC18222_Wong et al. (2007), V_5055_LC18222_Wong et al. (2007), V_5056_LC18250_Wong et al. (2007), V_5057_LC18279_Wong et al. (2007), V_5058_LC18374_Wong et al. (2007), V_5059_LC18395_Wong et al. (2007), V_5060_LC18434_Wong et al. (2007), V_5061_LC18463_Wong et al. (2007), V_5062_LC18530_Wong et al. (2007), V_5064_LC18537_Wong et al. (2007)

q11.2-q23

19 75953 23246989 RP11-505K21

RP11-638J2

242 23.17104 9 FLJ45445, PPAP2C, KIAA1193, THEG, SHC2, C19orf19, MADCAM1, C19orf20, CDC34, GZMM, BSG, HCN2, POLRMT, FGF22, RNF126, FSTL3, PRSSL1, PALM, C19orf21, PTBP1, PRG2, AZU1, PRTN3, ELA2, CFD, THRAP5, C19orf22, KISS1R, ARID3A, WDR18, GRIN3B, C19orf6, CNN2, ABCA7, HMHA1, POLR2E, GPX4, KIAA0963, STK11, C19orf26, ATP5D, MIDN, C19orf23, CIRBP, C19orf24, EFNA2, MUM1, NDUFS7, GAMT, DAZAP1, RPS15, LOC401019, APC2, C19orf25, PCSK4, REEP6, ADAMTSL5, RKHD1, MBD3, UQCR, TCF3, ONECUT3, ATP8B3, REXO1, KLF16, FAM108A1, SCAMP4, LOC113179, C19orf34, CSNK1G2, BTBD2, MKNK2, MOBKL2A, C19orf36, AP3D1, DOT1L, PLEKHJ1, SF3A2, AMH, JSRP1, OAZ1, C19orf35, LSM7, SPPL2B, TMPRSS9, TIMM13, LMNB2, GADD45B, GNG7, DIRAS1, SLC39A3, SGTA, THOP1, ZNF554, ZNF555, ZNF556, LOC126295, ZNF77, TLE6, TLE2, AES, GNA11, GNA15, EDG6, NCLN, BRUNOL5, NFIC, DOHH, FZR1, C19orf28, HMG20B, GIPC3, TBXA2R, C19orf29, PIP5K1C, TJP3, APBA3, MRPL54, RAXL1, MATK, KIAA1086, ATCAY, ITGB1BP3, DAPK3, EEF2, PIAS4, ZBTB7A, MAP2K2, CREB3L3, SIRT6, ANKRD24, EBI3, CCDC94, SHD, MGC23244, FSD1, STAP2, MPND, SH3GL1, CHAF1A, UBXD1, HDGF2, KIAA1881, LSDP5, LRG1, SEMA6B, TNFAIP8L1, C19orf10, DPP9, C19orf30

V_0220_LC18794_Iafrate et al. (2004), V_0808_LC18794_Sharp et al. (2005), V_2237_LC18671_Locke et al. (2006), V_2238_LC18783_Locke et al. (2006), V_2239_LC18794_Locke et al. (2006), V_2240_LC18794_Locke et al. (2006), V_2241_LC18908_Locke et al. (2006), V_4400_LC18834_Wong et al. (2007), V_5065_LC18671_Wong et al. (2007), V_5066_LC18671_Wong et al. (2007), V_5067_LC18671_Wong et al. (2007), V_5068_LC18671_Wong et al. (2007), V_5069_LC18671_Wong et al. (2007), V_5070_LC18730_Wong et al. (2007), V_5071_LC18730_Wong et al. (2007), V_5072_LC18736_Wong et al. (2007), V_5073_LC18746_Wong et al. (2007), V_5074_LC18749_Wong et al. (2007), V_5075_LC18752_Wong et al. (2007), V_5076_LC18770_Wong et al. (2007), V_5077_LC18773_Wong et al. (2007), V_5078_LC18783_Wong et al. (2007), V_5079_LC18794_Wong et al. (2007), V_5080_LC18794_Wong et al. (2007), V_5081_LC18794_Wong et al. (2007), V_5082_LC18794_Wong et al. (2007), V_5083_LC18794_Wong et al. (2007), V_5084_LC18813_Wong et al. (2007), V_5085_LC18818_Wong et al. (2007), V_5086_LC18821_Wong et al. (2007),

p13.3-p12

19 37157827 37639482 RP11-354M22

RP11-449C9

4 0.481655 4 ZNF507, MGC35440, DPY19L3 q13.11

22 30746679 34113688 RP11-810O6

RP11-316P10

33 3.367009 4 LOC402057, SLC5A1, LOC150297, RFPL2, SLC5A4, RFPL3, C22orf28, BPIL2, FBXO7, SYN3, TIMP3, LARGE, RAXLX, HMG2L1, TOM1, HMOX1


22 34652186 38135769 RP11-651L13

RP11-630N12

34 3.483583 5 RBM9, APOL3, APOL4, APOL2, APOL1, MYH9, TXN2, FLJ23322, EIF3S7, CACNG2, RABL4, PVALB, NCF4, CSF2RB, MGC35206, TST, MPST, KCTD17, TMPRSS6, IL2RB, C1QTNF6, SSTR3, RAC2, PSCD4, KIAA1904, MFNG, CARD10, CDC42EP1, LGALS2, GGA1, SH3BP1, PDXP, LGALS1, MGC3731, TRIOBP, H1F0, GCAT, GALR3, LOC129138, EIF3S6IP, MICAL-L1, C22orf23, POLR2F, SOX10, PICK1, SLC16A8, BAIAP2L2, PLA2G6, MAFF, C22orf5, CSNK1E, KCNJ4, KDELR3, DDX17, DMC1, PGEA1, TOMM22, JOSD1, GTPBP1, UNC84B, DNAL4, NPTXR, CBX6, APOBEC3A, APOBEC3B, APOBEC3C, APOBEC3D, APOBEC3F, APOBEC3G, ARP10, CBX7, PDGFB, RPL3, SYNGR1, MAP3K7IP1

V_0237_LC20476_Iafrate et al. (2004), V_2037_LC20505_Urban et al (2006), V_2038_LC20505_Urban et al (2006), V_5183_LC20479_Wong et al. (2007), V_5184_LC20492_Wong et al. (2007), V_5185_LC20500_Wong et al. (2007), V_5186_LC20500_Wong et al. (2007)

q12.3-q13.1

23 550000 1.55E+08 RP13-76L22

RP11-1245L19

1412 154.3569 8 XG, GYG2, ARSD, ARSE, ARSH, ARSF, MXRA5, PRKX, NLGN4X, VCX3A, HDHD1A, STS, VCX, PNPLA4, VCX2, VCX-C, KAL1, FAM9A, FAM9B, TBL1X, GPR143, APXL, WWC3, CLCN4, MID1, HCCS, ARHGAP6, AMELX, MSL3L1, FRMPD4, PRPS2, TLR7, TLR8, TMSL3, TMSB4X, FAM9C, EGFL6, RAB9A, TRAPPC2, OFD1, GPM6B, FAM51A1, GLRA2, FANCB, MOSPD2, ASB9, ASB11, PIGA, FIGF, PIR, BMX, ACE2, TMEM27, CA5B, ZRSR2, AP1S2, GRPR, CTPS2, S100G, SYAP1, CXorf15, RBBP7, REPS2, NHS, SCML1, RAI2, CXorf20, SCML2, CDKL5, RS1, PPEF1, PHKA2, GPR64, PDHA1, MAP3K15, SH3KBP1, CXorf23, FLJ14503, EIF1AX, RPS6KA3, CNKSR2, RP11-450P7.3, SMPX, MBTPS2, YY2, SMS, PHEX, ZNF645, DDX53, PTCHD1, PRDX4, ACOT9, SAT, MGC4825, FLJ25444, KLHL15, EIF2S3, ZFX, PDK3, PCYT1B, POLA, ARX, MAGEB18, MAGEB6, MAGEB10, WDR42B, IL1RAPL1, MAGEB2, MAGEB3, MAGEB4, MAGEB1, NR0B1, CXorf21, GK, TAB3, FTHL17, DMD, FAM47A, TMEM47, FAM47B, CXorf22, RP13-11B7.1, LOC442444, PRRG1, LANCL3, XK, CYBB, DYNLT3, SYTL5, SRPX, RPGR, OTC, TSPAN7, MID1IP1, BCOR, ATP6AP2, CXorf38, CRSP2, USP9X, DDX3X, NYX, CASK, GPR34, GPR82, MAOA, MAOB, NDP, EFHC2, FUNDC1, DUSP21, UTX, CXorf36, ZNF673, ZNF674, CHST7, SLC9A7, RP2, PHF16, RGN, ND

V_0241_LC20771_Iafrate et al. (2004), V_0242_LC20786_Iafrate et al. (2004), V_0243_LC20866_Iafrate et al. (2004), V_0244_LC20915_Iafrate et al. (2004), V_0245_LC20923_Iafrate et al. (2004), V_0246_LC20931_Iafrate et al. (2004), V_0247_LC20945_Iafrate et al. (2004), V_0248_LC20946_Iafrate et al. (2004), V_0249_LC20974_Iafrate et al. (2004), V_0250_LC21009_Iafrate et al. (2004), V_0251_LC21010_Iafrate et al. (2004), V_0252_LC21078_Iafrate et al. (2004), V_0253_LC21091_Iafrate et al. (2004), V_0254_LC21120_Iafrate et al. (2004), V_0255_LC21142_Iafrate et al. (2004), V_0362_LC20686_Shaw-Smith et al. (2004), V_0363_LC20881_Shaw-Smith et al. (2004), V_0820_LC20665_Sharp et al. (2005), V_0821_LC20656_Sharp et al. (2005), V_0822_LC20844_Sharp et al. (2005), V_0823_LC20844_Sharp et al. (2005), V_0824_LC20844_Sharp et al. (2005), V_0825_LC21225_Sharp et al. (2005), V_0826_LC21120_Sharp et al. (2005), V_0827_LC21138_Sharp et al. (2005), V_0828_LC21214_Sharp et al. (2005), V_2130_LC21120_Locke et al. (2006), V_2274_LC20665_Locke et al. (2006), V_2275_LC20696_Locke et al. (2006), V_2276_LC20844_Locke et al. (2006), V_227

p22.33-q28

24 482246 7400138 CTD-2584M8

RP11-556E10

56 6.917892 8 SHOX, CRLF2, CSF2RA, IL3RA, SLC25A6, ASMTL, P2RY8, DXYS155E, ASMT, DHRSX, ZBED1, CD99, SRY, RPS4Y1, ZFY, TGIF2LY, PCDH11Y, TSPY2, AMELY, TBL1Y, PRKY

V_2283_LC21227_Locke et al. (2006), V_2284_LC21227_Locke et al. (2006) p11.32-p11.2

Supplementary Table 2 - Recurrent gains and losses in 4 OCCC cell

lines



artificial chromosome at end of region, BACs = No. of bacterial artificial

chromosomes within region of copy number alteration, Length MB = size of

copy number alteration in MB, maxM = maximum M-value (aws ratio) within

region, Mirna = micro RNAs, aCGH CNVs = previously reported microarray

comparative genomic hybridisation copy number variations/ polymorphisms

Supplementary Table 4 - Smallest Regions of Overlap in Recurrently (2 or more cell lines) Amplifed Regions

chrom start end start.bac stop.bac genes mirnas acgh.cnvs cytobands1 93984119 94922866 RP11-455C19 RP11-767C7 DNTTIP2, GCLM, ABCA4, ARHGAP29, ABCD3, F3 p22.1-p21.31 95797560 99768413 RP11-743I8 RP11-291M15 PTBP2, DPYD, SNX7, PAP2D, LPPR4 V_4236_LC0622_Wong et al. (2007) p21.3-p21.21 101143553 102130846 RP11-381E16 RP11-466I18 SLC30A7, DPH5, EDG1, OLFM3 p21.2-p21.11 106860717 108423660 RP11-230E3 RP11-680B17 PRMT6, NTNG1, VAV3 V_4240_LC0671_Wong et al. (2007) p21.1-p13.31 111442529 113048296 RP11-598G14 RP11-35H13 TMEM77, CEPT1, DENND2D, CHI3L2, CHIA, C1orf88, OVGP1, WDR77, ATP5F1, C1orf162, ADORA3, RAP1A, C1orf183, DDX20, KCND3, CTTNBP2NL, WNT2B, ST7L, CAPZA1, MOV10, RHOC V_4242_LC0704_Wong et al. (2007) p13.3-p13.21 117277596 118822139 RP11-715G3 RP11-441H15 PTGFRN, IGSF2, TTF2, TRIM45, VTCN1, MAN1A2, FAM46C, GDAP2, WDR3, SPAG17 p13.1-p121 143653121 143842858 RP11-778C16 RP11-270L7 PDE4DIP, SEC22B V_0685_LC0752_Sharp et al. (2005), V_4249_LC0752_Wong et al. (2007) q21.11 181065684 181476559 RP11-249O6 RP11-175L1 DHX9, C1orf14, LAMC1, LAMC2 q25.31 227514958 228142499 RP11-315I22 RP11-63J5 C1orf96, ACTA1, NUP133, ABCB10, TAF5L, KIAA0133 q42.132 2332916 3270157 RP11-736F19 RP11-513H7 TSSC1 p25.32 4329498 8616967 RP11-645B16 RP11-434B12 SOX11, FLJ41046, LOC129607, RSAD2, RNF144 V_4273_LC1538_Wong et al. (2007), V_4274_LC1541_Wong et al. (2007) p25.2-p25.12 11750125 13415347 RP11-641J22 RP11-5N22 LPIN1, TRIB2 p25.1-p24.32 20372716 20935267 RP11-24C12 RP11-452B12 PUM2, RHOB, HS1BP3, GDF7, C2orf43 p24.12 27507766 28672073 RP11-354O17 RP11-16N17 NRBP1, KRTCAP3, IFT172, FNDC4, GCKR, C2orf16, ZNF512, FLJ13646, XAB1, SUPT7L, SLC4A1AP, MRPL33, RBKS, BRE, FOSL2, PLB1 p23.3-p23.22 35174806 36670189 RP11-427B21 RP11-484P1 CRIM1, FEZ2 al. (2007) p22.3-p22.22 39690526 41706139 RP11-109N19 RP11-730A18 MGC33926, THUMPD2, SLC8A1 p22.1-p212 42840025 43411791 RP11-318A23 RP11-183F15 OXER1, HAAO, ZFP36L2, THADA p212 45739300 46322822 RP11-601M20 RP11-125F15 PRKCE p212 49942242 51149038 RP11-16B4 RP11-82P15 NRXN1 p16.32 57703724 58396009 RP11-426N8 RP11-19M18 VRK2, FANCL V_4286_LC1888_Wong et al. (2007) p16.12 58576555 59141341 RP11-269D1 RP11-90D1 p16.12 86914908 88056043 RP11-1173M20 RP11-363L4 CD8B, LOC285074, MGC4677, PLGLB2, PLGLB1, RGPD2 al. (2007) p11.22 112882456 113956466 RP11-119B10 RP11-548H23 TTL, POLR1B, CHCHD5, SLC20A1, FLJ40629, IL1A, IL1B, IL1F7, IL1F9, IL1F6, IL1F8, IL1F5, IL1F10, IL1RN, PSD4, PAX8, CBWD2 q13-q14.12 113898809 114238497 RP11-638N20 RP11-23J23 CBWD2, FOXD4L1, RABL2A, SLC35F5 q14.12 119684359 120128215 RP11-804I3 RP11-689F8 STEAP3, LOC130355, DBI, TMEM37, SCTR, MGC33657 q14.22 132821463 133774459 RP11-725P16 RP11-789J19 GPR39, LYPD1, NAP5 V_4308_LC2246_Wong et al. (2007) q21.22 158132869 158917734 RP11-368O12 RP11-135A22 ACVR1C, ACVR1, UPP2, LOC130940 q24.12 165689926 166321316 RP11-637G10 RP11-652L22 SCN3A, SCN2A2, TAIP-2, GALNT3 q24.32 213184378 213645888 RP11-678F16 RP11-679N3 IKZF2 V_4324_LC2633_Wong et al. (2007) q343 142550171 142716241 RP11-453M9 RP11-788O7 ZBTB38, RASA2 q233 150479633 151234541 RP11-193G12 RP11-560P11 TM4SF18, TM4SF1, TM4SF4, WWTR1, COMMD2, RNF13, PFN2 q25.1

7 11238744 20920560 RP11-708A9 RP11-764C11 TMEM106B, SCIN, ARL4A, ETV1, DGKB, FLJ16237, MEOX2, SOSTDC1, ANKMY2, BZW2, TSPAN13, AGR2, BCMP11, AHR, SNX13, PRPS1L1, HDAC9, TWIST1, FERD3L, TWISTNB, MGC42090, 7A5, ITGB8, ABCB5, SP8et al. (2004), V_0100_LC9326_Iafrate et al. (2004), V_0101_LC9327_Iafrate et al. (2004), V_0102_LC9326_Iafrate et al. (2004),

V_0103_LC9328_Iafrate et al. (2004), V_4526_LC9320_Wong et al. (2007) p21.3-p15.37 25393844 26121748 RP11-356D8 RP11-818A14 p15.27 27441839 29759315 RP11-749D1 RP11-752C11 HIBADH, TAX1BP1, JAZF1, CREB5, KIAA0644, CPVL, CHN2, LOC222171 V_4529_LC9384_Wong et al. (2007) p15.2-p15.18 59896089 61434454 RP11-630K16 RP11-66L5 TOX, CA8 V_4595_LC10619_Wong et al. (2007) q12.18 62486394 64014767 RP11-317H6 CTD-2120K11 MGC34646, ASPH, FAM77D q12.38 127851608 128770263 RP11-633P13 RP11-237F24 q24.2111 68456763 70936495 RP11-154D10 RP11-684B2 IGHMBP2, MRGPRD, MRGPRF, TPCN2, MYEOV, CCND1, FLJ42258, ORAOV1, FGF19, FGF4, FGF3, TMEM16A, FADD, PPFIA1, CTTN, SHANK2, C11orf76, DHCR7, NADSYN1, KRTAP5-7, KRTAP5-8 V_4755_LC13316_Wong et al. (2007), V_4756_LC13329_Wong et al. (2007) q13.2-q13.411 74834870 75504565 RP11-563L9 RP11-680K14 GDPD5, SERPINH1, MAP6, MOGAT2, DGAT2, UVRAG q13.4-q13.511 110201485 110687546 RP11-285P16 RP11-263J6 C11orf53, FLJ45803 q23.117 33326852 33840062 RP11-722D15 RP11-72I20 TBC1D3B, TBC1D3, MRPL45, GPR179, SOCS7 V_5005_LC17457_Wong et al. (2007) q1217 34311476 34730322 RP11-15P20 RP11-592L16 LASP1, FBXO47, PLXDC1, CACNB1, RPL19, STAC2, FBXL20 V_5006_LC17473_Wong et al. (2007) q12

17 35833079 36917852 RP11-686E5 RP11-619I14IGFBP4, TNS4, CCR7, SMARCE1, KRT222P, KRT24, KRT25A, KRT25B, KRT25C, KRT28, KRT10, TMEM99, KRT12, KRT20, KRT23, KA35, KRT40, KRTAP3-3, KRTAP3-2, KRTAP3-1, KRTAP1-5, KRTAP1-3, KRTAP1-1, KRTAP2-4, KRTAP4-14, KRTAP4-12, KRTAP4-5,

KRTAP4-4, KRTAP4-2, KRTAP4-10, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP17-1, KRTHA3A, KRTHA3B, KRTHA4, KRTHA1, KRTHA7, KRTHA8, KRT32, KRTHA5, KRTHA6, KRT13 V_0205_LC17492_Iafrate et al. (2004) q21.217 41793763 42244748 RP11-57A24 RP11-67G6 LOC474170, ARL17, NSF, WNT3 V_5014_LC17522_Wong et al. (2007) q21.31-q21.3217 47115085 48850755 CTD-2230H9 RP11-577I13 CA10 V_0209_LC17565_Iafrate et al. (2004) q21.33-q2217 60135129 60485432 RP11-277D2 RP11-484A6 FLJ34306, GNA13 V_5024_LC17631_Wong et al. (2007) q24.119 34159859 34830341 RP11-347I6 RP11-272C23 UQCRFS1, POP4 q1219 35155612 36602072 RP11-354B17 RP11-549E8 C19orf2, ZNF536, TSHZ3 q1219 42635633 43251702 RP13-515N7 RP11-698K1 ZNF569, ZNF570, LOC390927, ZNF540, ZNF571, ZFP30, FLJ37549, ZNF607, ZNF573, SIPA1L3 V_5099_LC18991_Wong et al. (2007) q13.12-q13.1319 49677563 50320128 RP11-2O22 RP13-563C12 ZNF180, PVR, CEACAM19, CEACAM16, BCL3, CBLC, BCAM, PVRL2, TOMM40, APOE, APOC1, APOC4, APOC2, CLPTM1, RELB, SFRS16, ZNF342, GEMIN7 V_0221_LC19039_Iafrate et al. (2004), V_5103_LC19048_Wong et al. (2007) q13.31-q13.3219 31504647 32294344 NA q1220 39114015 39677527 RP11-380N2 RP11-469I22 TOP1, PLCG1, ZHX3, LPIN3, EMILIN3, CHD6 V_5138_LC19665_Wong et al. (2007) q1220 48071197 48717664 RP11-73P14 RP11-415K5 Kua-UEV, UBE2V1, Kua, CEBPB, LOC284751, PTPN1, C20orf175 V_5140_LC19784_Wong et al. (2007), V_5141_LC19791_Wong et al. (2007) q13.1320 48675561 49661575 RP13-625L11 RP11-94M5 C20orf175, PARD6B, BCAS4, ADNP, DPM1, MOCS3, KCNG1, NFATC2, ATP9A V_5141_LC19791_Wong et al. (2007) q13.13-q13.220 51819457 52366346 RP11-299C12 RP11-55L7 BCAS1, CYP24A1, PFDN4 V_5143_LC19835_Wong et al. (2007) q13.220 54873605 57894179 RP11-670K6 CTD-2160P21 BMP7, SPO11, RAE1, RNPC1, HMG1L1, CTCFL, PCK1, ZBP1, TMEPAI, C20orf85, PPP4R1L, RAB22A, VAPB, FLJ90166, STX16, NPEPL1, GNAS, TH1L, CTSZ, TUBB1, ATP5E, C20orf45, C20orf174, EDN3, PHACTR3, SYCP2 q13.31-q13.3220 58951342 59760422 RP11-26B8 RP11-30D13 CDH4 q13.3320 61079458 61326392 RP11-166C8 CTD-2240P21 BHLHB4, YTHDF1 V_5148_LC19985_Wong et al. (2007) q13.3320 61862014 62434349 RP11-799O9 RP11-350G15 BTBD4, C20orf135, TPD52L2, DNAJC5, UCKL1, GM632, SAMD10, PRPF6, LOC284739, SOX18, TCEA2, RGS19, OPRL1, LOC198437, NPBWR2, MYT1, PCMTD2 V_2252_LC19985_Locke et al. (2006) q13.3321 42613790 43079126 RP11-282I20 RP11-506G14 TFF2, TFF1, TMPRSS3, UBASH3A, TSGA2, SLC37A1, PDE9A q22.3

Smallest Regions of Overlap in Recurrently (2 or more cell lines) Amplifed Regions (log2ratio>0.4)

Supplementary Table 4 – smallest region of overlap for amplified

regions (log2ratio>0.4) in 2 or more OCCC cell lines



artificial chromosome at end of region, Mirna = micro RNAs, aCGH.CNVs =

previously reported microarray comparative genomic hybridisation copy

number variations/ polymorphisms

symbol refseq unigene chromosome cytoband start (kb) end (kb) t.test.p.gainUTP14C NM_021645 Hs.512963 13 q14.3 51496.827 51496.827 0.0000001712EIF2S2 NM_003908 Hs.429180 20 q11.22 32139.777 32139.777 0.0000064226RNF121 NM_018320 Hs.368554 11 q13.4 71317.73 71317.73 0.0000064214TM9SF2 NM_004800 Hs.130413 13 q32.3 98951.728 98951.728 0.0000060460CHCHD4 NM_144636 Hs.517815 3 p25.1 14128.583 14128.583 0.0000094374BOLA3 NM_001035505 Hs.61472 2 p13.1 74216.035 74216.035 0.0000191555HERC4 NM_001017972 Hs.51891 10 q21.3 69351.67 69352.252 0.0000147639KLHL24 NM_017644 Hs.407709 3 q27.1 184836.104 184836.104 0.0000191409SEC24C NM_004922 Hs.81964 10 q22.2 75174.137 75174.137 0.0000136073TMTC4 NM_001079669 NA 13 q32.3 100054.091 100054.091 0.0000168401

CCDC115 NM_032357 Hs.104203 2 q21.1 130812.285 130812.285 0.0000277759FAM107B NM_031453 Hs.446315 10 p13 14600.564 14600.564 0.0000362233

BNIP3 NM_004052 Hs.144873 10 q26.3 133631.193 133631.193 0.0000400808STK24 NM_001032296 Hs.508514 13 q32.2 97900.455 97900.455 0.0000426978DTNB NM_021907 Hs.307720 2 p23.3 25453.615 25453.615 0.0000536997ECOP NM_030796 Hs.488307 7 p11.2 55505.8 55505.8 0.0000543801

KIAA0831 NM_014924 Hs.414809 14 q22.3 54902.862 54902.862 0.0000554317SAR1A NM_020150 Hs.499960 10 q22.1 71579.973 71579.973 0.0000553157

COL18A1 NM_030582 Hs.84190 21 q22.3 45649.524 45699.851 0.0000663417PTDSS2 NM_030783 Hs.12851 11 p15.5 440.279 440.279 0.0000653998MGAT2 NM_001015883 Hs.93338 14 q22.1 49157.238 49157.238 0.0000737426C9orf7 NM_017586 Hs.62003 9 q34.2 135314.951 135314.951 0.0000837316

UGCGL1 NM_001025777 Hs.34180 2 q14.3 128565.254 128565.363 0.0000867436LRP8 NM_001018054 Hs.576154 1 p32.3 53483.799 53483.804 0.0000917622

ARMC1 NM_018120 Hs.269542 8 q13.1 66677.629 66677.629 0.0001215490FAM82B NM_016033 Hs.145386 8 q21.3 87553.694 87553.694 0.0001236659SUSD4 NM_001037175 Hs.497841 1 q41 221460.784 221474.874 0.0001404719PDIA6 NM_005742 Hs.212102 2 p25.1 10840.969 10840.969 0.0001532137IFI35 NM_005533 Hs.632258 17 q21.31 38412.35 38412.35 0.0001736086

LOC130074 NM_001009993 Hs.534679 2 q21.1 131521.919 131521.919 0.0001689124TULP3 NM_003324 Hs.198853 12 p13.33 2870.293 2870.293 0.0001669271

HSPC148 NM_016403 Hs.503597 11 q21 94335.93 94335.93 0.0001927018PGGT1B NM_005023 Hs.254006 5 q22.3 114575.475 114575.475 0.0001861159

PLK2 NM_006622 Hs.398157 5 q11.2 57785.568 57785.568 0.0001986796PREB NM_013388 Hs.279784 2 p23.3 27207.13 27207.13 0.0002150422RBM14 NM_006328 Hs.533712 11 q13.1 66140.672 66140.672 0.0002071452WARS NM_004184 Hs.497599 14 q32.2 99869.877 99869.877 0.0002068959XRCC1 NM_006297 Hs.98493 19 q13.31 48739.303 48739.303 0.0002140740MRPL33 NM_004891 Hs.515879 2 p23.2 27848.087 27848.087 0.0002228347PDDC1 XM_001129857 Hs.218362 11 p15.5 757.223 757.223 0.0002402639SCOC NM_032547 Hs.480815 4 q31.1 141397.889 141397.889 0.0002499771XPC NM_004628 Hs.475538 3 p25.1 14161.65 14161.65 0.0002487614

SPHK2 NM_020126 Hs.528006 19 q13.33 53814.359 53814.359 0.0002638952STK24 NM_001032296 Hs.508514 13 q32.2 97900.455 97900.455 0.0002645193LIG3 NM_002311 Hs.100299 17 q12 30331.65 30331.65 0.0002855718

CHURC1 NM_145165 Hs.325531 14 q23.3 64450.892 64450.892 0.0002973790RDX NM_002906 Hs.263671 11 q22.3 109605.375 109605.375 0.0003011243

KIAA1542 NM_020901 Hs.325838 11 p15.5 566.485 566.485 0.0003356532MCM3 NM_002388 Hs.179565 6 p12.2 52236.77 52236.77 0.0003264377

SERINC3 NM_006811 Hs.272168 20 q13.12 42558.277 42561.314 0.0003251675TTYH3 NM_025250 Hs.440899 7 p22.2 2638.128 2638.128 0.0003293323PSMD6 NM_014814 Hs.152536 3 p14.1 63971.27 63971.27 0.0003455620

LSR NM_015925 Hs.466507 19 q13.12 40431.398 40431.398 0.0003523856USF2 NM_003367 Hs.454534 19 q13.12 40451.735 40451.735 0.0003789867

ZNF384 NM_001039916 Hs.103315 12 p13.31 6645.904 6645.904 0.0003856567APOA1BP NM_144772 Hs.528320 1 q23.1 154828.181 154828.181 0.0004448285

CBX3 NM_007276 Hs.381189 7 p15.2 26207.623 26207.848 0.0004265565CCDC76 NM_019083 Hs.440371 1 p21.2 100371.306 100371.306 0.0004439354CKAP2 NM_018204 Hs.444028 13 q14.3 51927.596 51927.596 0.0004452768

ECHDC1 NM_018479 Hs.486410 6 q22.33 127651.551 127651.551 0.0004500199METTL8 NM_024770 Hs.135146 2 q31.1 171888.006 171888.006 0.0004443600LIMS1 XM_001129158 Hs.597715 2 q12.3 108571.198 108571.198 0.0004146741RPL30 NM_000989 Hs.400295 8 q22.2 99123.118 99123.118 0.0004194504

FRMD4A NM_018027 Hs.330463 10 p13 13725.712 13725.712 0.0004819499DIP2C NM_014974 Hs.432397 10 p15.3 311.431 311.431 0.0004749409FDX1 NM_004109 Hs.744 11 q22.3 109805.803 109805.803 0.0005231568GPS1 NM_004127 Hs.268530 17 q25.3 77603.051 77603.051 0.0005336108IRS2 NM_003749 Hs.442344 13 q34 109204.184 109204.184 0.0005552378

SNAP29 NM_004782 Hs.108002 22 q11.21 19543.291 19543.291 0.0005584173TTC13 XM_001129820 Hs.424788 1 q42.2 229108.612 229108.612 0.0005581050

MGC61571 NM_182523 Hs.444724 3 p24.1 28258.127 28258.127 0.0005808037PTTG1IP NM_004339 Hs.474010 21 q22.3 45093.94 45093.94 0.0006149831SETD3 NM_032233 Hs.510407 14 q32.2 98933.836 98945.894 0.0006355941FAIM NM_001033030 Hs.173438 3 q22.3 139810.231 139810.608 0.0006538913PHF2 NM_024517 Hs.211441 9 q22.31 95378.729 95378.729 0.0006499883

PCBP1 NM_006196 Hs.2853 2 p14 70168.204 70168.204 0.0006759358WDR42A NM_015726 Hs.632447 1 q23.2 158452.128 158452.128 0.0006711773MARK2 NM_001039468 Hs.567261 11 q13.1 63363.47 63419.206 0.0007077693KCTD2 XM_940854 Hs.514468 17 q25.1 70554.873 70554.873 0.0007548963C2orf29 NM_017546 Hs.593973 2 q11.2 101235.809 101235.809 0.0007709770

LOC220686 NM_199283 Hs.448225 22 q11.21 20157.288 20157.288 0.0007754384C11orf75 NM_020179 Hs.438064 11 q21 92851.286 92851.286 0.0007896754TMEM135 NM_022918 Hs.188591 11 q14.2 86426.712 86426.712 0.0008064806

DCTD NM_001012732 Hs.183850 4 q35.1 184048.238 184048.238 0.0008162711HIP1R XM_001132864 Hs.524815 12 q24.31 121885.991 121885.991 0.0008447003CCT6B NM_006584 Hs.73072 17 q12 30279.051 30279.051 0.0008578299HSPA4L NM_014278 Hs.135554 4 q28.1 128922.902 128922.902 0.0009326799MAGOH NM_002370 Hs.421576 1 p32.3 53465.153 53465.153 0.0009356355

OSBPL10 NM_017784 Hs.150122 3 p23 31677.321 31677.321 0.0009299163PAXIP1 NM_007349 Hs.443881 7 q36.2 154366.333 154366.333 0.0009270521H3F3A NM_002107 Hs.533624 1 q42.12 224317.043 224317.043 0.0009475246DHCR7 NM_001360 Hs.503134 11 q13.4 70823.104 70823.104 0.0009690147ACTB NM_001101 Hs.520640 7 p22.1 5533.312 5533.312 0.0009835127

RBBP7 XM_001128430 Hs.495755 23 p22.2 16772.697 16772.697 0.0009996361SLC20A2 NM_006749 NA 8 p11.21 42393.151 42393.151 0.0010041134C13orf34 NM_024808 Hs.643464 13 q22.1 72200.042 72200.042 0.0010174397HERC4 NM_001017972 Hs.51891 10 q21.3 69351.67 69352.252 0.0010482942MTFR1 NM_014637 Hs.444831 8 q13.1 66719.527 66719.527 0.0010557657

AASDHPPT NM_015423 Hs.524009 11 q22.3 105453.501 105453.501 0.0011268450CBX3 NM_007276 Hs.381189 7 p15.2 26207.623 26207.848 0.0011426281

DNAJC10 NM_018981 Hs.516632 2 q32.1 183289.243 183289.243 0.0011182967FLJ45445 NM_001004321 Hs.512417 19 p13.3-q13.43 148.048 180683.893 0.0010728695

ICT1 NM_001545 Hs.407955 17 q25.1 70520.374 70520.374 0.0010867393SLFN5 NM_144975 Hs.652134 17 q12 30594.204 30594.204 0.0010908956PLAU NM_002658 Hs.77274 10 q22.2 75340.895 75340.895 0.0011153944

PSME3 NM_005789 Hs.152978 17 q21.31 38238.948 38238.948 0.0011393978HCCA2 NM_053005 Hs.370360 11 p15.5 1447.268 1447.268 0.0012040946ATP7B NM_000053 Hs.492280 13 q14.3 51404.805 51404.805 0.0012491357

CLPTM1 NM_001294 Hs.444441 19 q13.32 50150.477 50150.477 0.0013021776CLYBL NM_138280 Hs.130690 13 q32.3 99056.936 99056.936 0.0013718953

MAN1A2 NM_006699 Hs.435938 1 p12 117711.607 117711.607 0.0013831472MED25 NM_030973 Hs.587979 19 q13.33 55013.357 55013.357 0.0013314265PDHA1 NM_000284 Hs.530331 23 p22.12 19271.971 19271.971 0.0014082618PLP2 NM_002668 Hs.77422 23 p11.23 48915.216 48915.216 0.0014105850

RG9MTD1 NM_017819 Hs.643184 3 q12.3 102763.401 102763.401 0.0013761472RINT1 NM_021930 Hs.592270 7 q22.2 104959.767 104959.767 0.0013748701

SERINC3 NM_006811 Hs.272168 20 q13.12 42558.277 42561.314 0.0013900457SLC6A8 NM_005629 Hs.540696 23 q28 152606.585 152606.585 0.0013786199WDR53 NM_182627 Hs.385865 3 q29 197765.457 197765.457 0.0013890909ZNF545 NM_133466 Hs.558734 19 q13.12 41574.7 41574.7 0.0013118118DKKL1 NM_014419 Hs.515855 19 q13.33 54558.853 54558.853 0.0014401175EPS8L1 NM_017729 Hs.438862 19 q13.42 60275.199 60283.571 0.0014462088

ZDHHC24 NM_207340 NA 11 q13.1 66063.31 66063.31 0.0014568598PRR5 NM_001017528 Hs.102336 22 q13.31 43443.256 43476.746 0.0014709761ACAT1 NM_000019 Hs.232375 11 q22.3 107497.467 107497.467 0.0015472272

ARHGEF4 NM_015320 Hs.469935 2 q21.1 131390.693 131390.693 0.0016469562C3orf1 NM_016589 Hs.477287 3 q13.33 120700.057 120700.057 0.0016714070

DKFZp434K1815 NM_152892 Hs.274135 7 q22.1 101892.394 101892.394 0.0016711028FBXO11 NM_012167 Hs.352677 2 p16.3 47887.564 47899.228 0.0016759138

IDI1 NM_004508 Hs.283652 10 p15.3 1075.965 1075.965 0.0016531077LOC553158 NM_181334 Hs.102336 22 q13.31 43489.132 43489.132 0.0016615413TMEM167 NM_174909 Hs.355606 5 q14.2 82387.741 82387.741 0.0016270462

PLS1 NM_002670 Hs.203637 3 q23 143825.033 143825.033 0.0016761723SOX30 NM_007017 Hs.529462 5 q33.3 156985.264 156985.264 0.0016747475DDX18 NM_006773 Hs.363492 2 q14.1 118288.724 118288.724 0.0018018167CLYBL NM_138280 Hs.130690 13 q32.3 99056.936 99056.936 0.0018186339RGS12 NM_002926 Hs.527061 4 p16.2 3285.671 3341.521 0.0018434149UBXD4 NM_181713 Hs.591576 2 p23.3 24016.879 24016.879 0.0018546278RFC2 NM_002914 Hs.647062 7 q11.23 73283.769 73283.769 0.0018991498TMPIT NM_031925 Hs.488835 7 q11.23 75454.243 75454.243 0.0018885365

METRN NM_024042 Hs.533772 16 p13.3 705.173 705.173 0.0019162360TFG NM_001007565 Hs.518123 3 q12.2 101910.849 101910.849 0.0019554793

ZNF432 NM_014650 Hs.572539 19 q13.33 57228.489 57228.489 0.0019876658COG2 NM_007357 Hs.211800 1 q42.2 228844.88 228844.88 0.0020279320GMPS NM_003875 Hs.518345 3 q25.31 157071.018 157071.018 0.0020860651

LRPAP1 NM_002337 Hs.533136 4 p16.2 3484.092 3484.092 0.0020977480BBC3 NM_014417 Hs.467020 19 q13.32 52415.924 52415.924 0.0021508143

HAGHL NM_032304 Hs.124015 16 p13.3 716.958 717.266 0.0021444104INA NM_032727 Hs.500916 10 q24.33 105026.909 105026.909 0.0021836202

CIRBP NM_001280 Hs.634522 19 p13.3 1220.346 1220.346 0.0022082039MED9 NM_018019 Hs.244595 17 p11.2 17321.024 17321.024 0.0023390500VASH1 NM_014909 Hs.525479 14 q24.3 76298.284 76298.284 0.0023837972USF2 NM_003367 Hs.454534 19 q13.12 40451.735 40451.735 0.0023746731

FAM82B NM_016033 Hs.145386 8 q21.3 87553.694 87553.694 0.0024289555LARP7 NM_015454 Hs.652365 4 q25 113777.568 113778.06 0.0024371469C7orf23 NM_024315 Hs.196129 7 q21.12 86663.413 86663.413 0.0024757289UXS1 NM_025076 Hs.469561 2 q12.2 106076.191 106076.191 0.0024923138

MFSD1 NM_022736 Hs.58663 3 q25.33 160002.605 160002.605 0.0025692901GFM1 NM_024996 Hs.652359 3 q25.32 159845.01 159845.01 0.0025956567

KDELR2 NM_006854 Hs.487498 7 p22.1 6468.794 6468.794 0.0026658866PPP2R5C NM_002719 Hs.368264 14 q32.31 101345.924 101345.924 0.0026536813

ABHD7 NM_173567 Hs.201555 1 p22.1 92268.145 92268.145 0.0027294697RPN1 NM_002950 Hs.518244 3 q21.3 129821.502 129821.502 0.0027655714

ZNF347 NM_032584 Hs.467239 19 q13.41 58334.459 58334.459 0.0027599177ADK NM_001123 Hs.584739 10 q22.2 75580.97 75606.449 0.0028169755

PSMD14 NM_005805 Hs.567410 2 q24.2 161873.185 161873.185 0.0028792746CDH24 NM_022478 Hs.155912 14 q11.2 22586.709 22586.709 0.0029644998MRPL3 NM_007208 Hs.205163 3 q22.1 132663.735 132663.735 0.0029678595

DBT NM_001918 Hs.633217 1 p21.2 100425.066 100425.066 0.0030004665CRELD2 NM_024324 Hs.211282 22 q13.33 48698.347 48698.347 0.0030986978

PNKP NM_007254 Hs.78016 19 q13.33 55056.273 55056.273 0.0030887121NUB1 NM_016118 Hs.647082 7 q36.1 150669.79 150669.79 0.0031246686

TUBB4Q XM_941232 Hs.351544 4 q35.2 191140.672 191140.672 0.0031406658ACP1 NM_001040649 Hs.558296 2 p25.3 254.871 254.895 0.0032200933

EPS8L1 NM_017729 Hs.438862 19 q13.42 60275.199 60283.571 0.0032205392FTL NM_000146 Hs.433670 19 q13.33 54160.377 54160.377 0.0032135288

BIRC6 NM_016252 Hs.150107 2 p22.3 32435.233 32435.233 0.0035076779C10orf78 NM_001002759 Hs.93667 10 q25.1 105871.805 105871.918 0.0034654362HNRPA1 NM_002136 Hs.444314 12 q13.13 52960.754 52960.754 0.0034415512

KRIT1 NM_001013406 Hs.531987 7 q21.2 91666.218 91666.218 0.0034922173LOC144233 NM_181708 Hs.142736 12 q13.13 48517.826 48517.826 0.0035168959

EIF4H NM_022170 Hs.520943 7 q11.23 73226.641 73226.641 0.0034290592RSAD1 NM_018346 Hs.8033 17 q21.33 45911.188 45911.188 0.0035764789

C10orf118 NM_018017 Hs.159066 10 q25.3 115871.963 115871.963 0.0036609482CBFA2T2 NM_001032999 Hs.153934 20 q11.22 31541.588 31613.831 0.0036272341GTF2B NM_001514 Hs.481852 1 p22.2 89091.204 89091.204 0.0036215941USP5 NM_003481 Hs.631661 12 p13.31 6831.583 6831.583 0.0036487851

C1orf82 NM_024813 Hs.444421 1 p22.1 92537.194 92537.194 0.0037290108LOC57228 NM_001031628 Hs.652389 12 q13.13 49925.399 49925.399 0.0037561697

CDV3 XM_001133252 NA 3 q22.1 134775.263 134775.263 0.0039799906EDN2 NM_001956 Hs.1407 1 p34.2 41717.035 41717.035 0.0039977706RALY NM_007367 Hs.136947 20 q11.22 32045.392 32045.392 0.0040177655

C4orf18 NM_001031700 Hs.567498 4 q32.1 159265.212 159265.458 0.0041139635TNFRSF21 NM_014452 Hs.443577 6 p12.3 47307.227 47307.227 0.0041574049

MRPS7 NM_015971 Hs.71787 17 q25.1 70769.384 70769.384 0.0041804046MAP4K3 NM_003618 Hs.468239 2 p22.1 39329.926 39329.926 0.0042173682YWHAG NM_012479 Hs.520974 7 q11.23 75794.052 75794.052 0.0044190766LIMS3 NM_033514 Hs.535619 2 q13 110013.557 110657.17 0.0044774895ERCC8 NM_000082 Hs.435237 5 q12.1 60205.414 60234.942 0.0046107473IL6ST NM_002184 Hs.532082 5 q11.2 55272.451 55272.451 0.0045528550

NDUFA5 NM_005000 Hs.651219 7 q31.32 122968.319 122968.319 0.0045393145RPL38 NM_000999 Hs.380953 17 q25.1 69711.389 69711.389 0.0046189081

STRA13 NM_144998 Hs.37616 17 q25.3 77569.868 77569.868 0.0045496445TMEM16J XM_001129032 Hs.501622 11 p15.5 407.937 407.937 0.0046197309DHRS3 NM_004753 Hs.289347 1 p36.22 12550.526 12550.526 0.0046810088DSG2 NM_001943 Hs.412597 18 q12.1 27332.169 27332.169 0.0047578014ACTB NM_001101 Hs.520640 7 p22.1 5533.312 5533.312 0.0049956045

ARL13B NM_144996 Hs.533086 3 q11.2 95181.671 95181.671 0.0049385042DBNL NM_001014436 Hs.436500 7 p13 44050.829 44050.829 0.0048363704

DNAJC3 NM_006260 Hs.591209 13 q32.1 95127.483 95127.483 0.0049645502ZNF784 NM_203374 Hs.53996 19 q13.42 60823.918 60823.918 0.0049168681

TMEM177 NM_030577 Hs.439991 2 q14.2 120153.224 120153.224 0.0048001238MRPL33 NM_004891 Hs.515879 2 p23.2 27848.087 27848.087 0.0050031721MTDH NM_178812 Hs.377155 8 q22.1 98725.582 98725.582 0.0049805109

NME1-NME2 NM_001018136 Hs.463456 17 q21.33 46585.918 46585.918 0.0048646215ZBED4 NM_014838 Hs.475208 22 q13.33 48633.532 48633.532 0.0049557049

C14orf179 NM_052873 Hs.532626 14 q24.3 75521.877 75521.877 0.0050532137NFE2L3 NM_004289 Hs.404741 7 p15.2 26158.384 26158.384 0.0050837649

RP11-564C4.1 XM_928675 Hs.282795 10 q11.23 52169.713 52169.713 0.0051574957MLLT10 NM_001009569 Hs.30385 10 p12.31 21863.107 21863.579 0.0051724417MCOLN3 NM_018298 Hs.535239 1 p22.3 85256.353 85256.353 0.0052327923PRPF38A NM_032284 Hs.5301 1 p32.3 52642.823 52642.887 0.0054785940

RBKS NM_022128 Hs.11916 2 p23.2 27857.769 27857.769 0.0054848657WRNIP1 NM_020135 Hs.236828 6 p25.2 2710.664 2710.664 0.0054865494DGUOK NM_080916 Hs.469022 2 p13.1 74007.46 74007.46 0.0055632121FEN1 NM_004111 Hs.409065 11 q12.2 61316.725 61316.725 0.0055865800

C11orf73 NM_016401 Hs.283322 11 q14.2 85690.935 85690.935 0.0055962071NEK1 NM_012224 Hs.481181 4 q33 170551.003 170551.003 0.0056203803

PPP1R16A NM_032902 Hs.521937 8 q24.3 145692.916 145692.916 0.0055888005ELF3 NM_004433 Hs.67928 1 q32.1 200243.695 200243.695 0.0056574207

OSBPL8 NM_001003712 Hs.430849 12 q21.2 75269.71 75269.71 0.0056754465CYP39A1 NM_016593 Hs.387367 6 p12.3 46625.404 46625.404 0.0057621173DAPK1 NM_004938 Hs.380277 9 q21.33 89302.575 89302.575 0.0057392833ARSD NM_001669 NA 23 p22.33 2832.011 2841.654 0.0058661380CRKL NM_005207 Hs.592205 22 q11.21 19601.713 19601.713 0.0058622479

CSTF2T NM_015235 Hs.591358 10 q11.23 53125.252 53125.252 0.0058116345MFSD8 NM_152778 Hs.480701 4 q28.1 129061.026 129061.026 0.0058646445ASCC1 NM_015947 Hs.500007 10 q22.1 73526.283 73526.283 0.0059859468MTA3 NM_020744 Hs.435413 2 p21 42649.174 42649.174 0.0060438561

TMEM43 NM_024334 Hs.517817 3 p25.1 14141.545 14141.545 0.0060798987CALM2 NM_001743 Hs.282410 2 p21 47240.808 47240.808 0.0061765492

ZNF816A NM_001031665 Hs.446907 19 q13.41 58144.445 58144.445 0.0061964328CTSA NM_000308 Hs.652282 20 q13.12 43952.997 43952.997 0.0062038929

FOXD4L4 NM_199244 Hs.534644 9 p11.2-q12 42707.229 69666.444 0.0062340810TGFBR3 NM_003243 Hs.482390 1 p22.2 91920.574 91920.574 0.0062711901USP30 NM_032663 Hs.486434 12 q24.11 107974.773 107974.773 0.0063020485C4orf18 NM_001031700 Hs.567498 4 q32.1 159265.212 159265.458 0.0064098251CDCA5 NM_080668 Hs.434886 11 q13.1 64601.502 64601.502 0.0064826083

CDKN2C NM_001262 Hs.525324 1 p33 51206.954 51208.229 0.0064130770GPX3 NM_002084 Hs.386793 5 q33.1 150380.191 150380.191 0.0064608024

TMEM171 NM_173490 Hs.162246 5 q13.2 72452.157 72452.157 0.0063997217TUSC3 NM_006765 Hs.591845 8 p22 15442.1 15442.1 0.0064317297

ANAPC1 XM_001129602 Hs.436527 2 q13 112243.112 112243.112 0.0067237471ARL5A NM_001037174 Hs.470233 2 q23.3 152365.725 152365.725 0.0066773275C1orf35 NM_024319 Hs.445952 1 q42.13 226355.051 226355.051 0.0065733239HKDC1 NM_025130 Hs.522988 10 q21.3 70650.064 70650.064 0.0066102057MMAB NM_052845 Hs.12106 12 q24.11 108475.903 108475.903 0.0067081471COX19 NM_001031617 Hs.121593 7 p22.3 971.011 971.011 0.0066449718NLRP2 NM_017852 Hs.369279 19 q13.42 60169.582 60169.582 0.0066881777SFT2D2 NM_199344 Hs.645435 1 q24.2 166461.869 166461.869 0.0066743233

TOMM70A NM_014820 Hs.227253 3 q12.2 101564.998 101564.998 0.0067433373DMKN NM_001035516 Hs.417795 19 q13.12 40679.962 40679.962 0.0067149721

ATP2C1 NM_001001485 Hs.584884 3 q22.1 132096.123 132096.123 0.0068760043FLAD1 NM_025207 Hs.118666 1 q21.3 153222.44 153222.44 0.0068086076

RNASEH1 NM_002936 Hs.568006 2 p25.3 3570.567 3570.567 0.0068751930SLC44A1 NM_022109 Hs.573495 9 q31.1 107046.749 107046.749 0.0068440870C2orf18 NM_017877 Hs.516034 2 p23.3 26840.645 26840.645 0.0069206195

ADI1 NM_018269 Hs.502773 2 p25.3 3480.697 3480.697 0.0070637309FAM55C NM_145037 Hs.130195 3 q12.3 102980.763 102980.763 0.0069918400ITGA2B NM_000419 Hs.411312 17 q21.31 39805.075 39805.075 0.0070396473SNRPG NM_003096 Hs.10414 2 p14 70362.013 70362.013 0.0070822576

ZFYVE21 NM_024071 Hs.592322 14 q32.33 103251.897 103251.897 0.0070302943WDSOF1 NM_015420 Hs.532265 8 q22.3 104496.117 104496.117 0.0071104301MMS19L NM_022362 Hs.500721 10 q24.1 99208.07 99208.07 0.0071465963AGPAT3 NM_001037553 Hs.248785 21 q22.3 44109.543 44169.706 0.0073166531GBAS NM_001483 Hs.591069 7 p11.2 55999.789 55999.789 0.0073242703GLMN NM_053274 Hs.49105 1 p22.1 92484.544 92484.544 0.0073318793POLL NM_013274 Hs.523230 10 q24.32 103328.63 103328.63 0.0072427332SSH2 NM_033389 Hs.335205 17 q11.2 24977.09 24977.09 0.0073114460ARL5A NM_001037174 Hs.470233 2 q23.3 152365.725 152365.725 0.0074058386IFRD1 NM_001007245 Hs.7879 7 q31.1 111850.461 111877.75 0.0074945357ACN9 NM_020186 Hs.592269 7 q21.3 96584.955 96584.955 0.0075517852

DNAJC9 NM_015190 Hs.408577 10 q22.2 74672.589 74672.589 0.0075282206COG3 NM_031431 Hs.507948 13 q14.12 44937.071 44937.071 0.0076564472ZNRD1 NM_014596 Hs.57813 6 p25.3-p21.33 1477.648 30137.014 0.0077057120PITRM1 NM_014889 Hs.528300 10 p15.2 3169.919 3169.919 0.0077403531ZXDC NM_001040653 Hs.440049 3 q21.2 127639.134 127660.36 0.0078203294MLL4 NM_014727 Hs.92236 19 q13.12 40900.76 40900.76 0.0078760158SELT NM_016275 Hs.369052 3 q25.1 151803.755 151803.755 0.0079128211

ST6GAL1 NM_003032 Hs.207459 3 q27.3 188131.209 188222.358 0.0079276484USP14 NM_001037334 Hs.464416 18 p11.32 148.482 148.482 0.0079928878

SPPL2B NM_020172 Hs.330742 19 p13.3 2279.628 2279.628 0.0080900773TRIM9 NM_015163 Hs.368928 14 q22.1 50511.732 50532.535 0.0080978847USP21 NM_001014443 Hs.8015 1 q23.3 159395.877 159395.877 0.0081151866NCBP2 NM_001042540 Hs.591671 3 q29 198146.669 198146.669 0.0082457506

RP3-402G11.5 NM_031454 Hs.365405 22 q13.33 48981.534 48981.534 0.0082890136OAZ1 NM_004152 Hs.446427 19 p13.3 2220.519 2220.519 0.0083922211

ITGB3BP NM_014288 Hs.166539 1 p31.3 63679.049 63679.049 0.0084931970SPINT2 NM_021102 Hs.31439 19 q13.2 43447.041 43447.041 0.0085017720TRPV4 NM_021625 Hs.506713 12 q24.11 108705.276 108705.276 0.0087311503DHX36 NM_020865 Hs.446270 3 q25.2 155476.151 155476.151 0.0087612875

HMG1L1 NM_001008735 Hs.568249 20 q13.31 55496.855 55496.855 0.0089354007PRO1853 NM_018607 Hs.433466 2 p22.2 37312.293 37312.293 0.0089121872

ECT2 NM_018098 Hs.518299 3 q26.31 173954.991 173954.991 0.0089772162MGC2408 NM_032331 Hs.146161 3 q27.1 185450.142 185450.142 0.0091882915PSMC2 NM_002803 Hs.437366 7 q22.1 102775.324 102775.324 0.0091499344

SLC25A28 NM_031212 Hs.403790 10 q24.2 101360.271 101360.271 0.0091420220TIMM23 XM_001133798 Hs.524308 10 q11.23 51262.095 51262.095 0.0091985452

FLJ41841 NM_207499 Hs.437343 6 p12.3 47975.303 47975.303 0.0092821735CDYL NM_004824 Hs.269092 6 p25.1 4651.391 4721.681 0.0093571358

PHF21B NM_138415 Hs.254097 22 q13.31 43655.708 43655.708 0.0094582192C20orf43 NM_016407 Hs.517134 20 q13.31 54477.091 54477.091 0.0095769057C7orf36 NM_020192 Hs.83313 7 p14.1 39572.533 39572.533 0.0095929204

KIAA1524 NM_020890 Hs.591308 3 q13.13 109752.096 109752.096 0.0096215921C9orf97 NM_139246 Hs.404289 9 q22.33 99402.184 99402.184 0.0097818871CEPT1 NM_001007794 Hs.363572 1 p13.3 111483.771 111484.355 0.0097248180GOT1 NM_002079 Hs.500756 10 q24.2 101146.617 101146.617 0.0096931501

IQSEC1 NM_014869 Hs.475506 3 p25.1 12914.373 12914.373 0.0097525808FUT11 NM_173540 Hs.588854 10 q22.2 75202.054 75202.054 0.0099148704PPAN NM_020230 Hs.14468 19 p13.2 10077.964 10077.964 0.0099365721TTC7A NM_020458 Hs.370603 2 p21 47021.816 47021.816 0.0098814263

NUCKS1 NM_022731 Hs.632458 1 q32.1 203953.731 203953.731 0.0099740165PKP3 XM_001129327 Hs.534395 11 p15.5 384.216 384.216 0.0100484991

ZNF234 NM_006630 Hs.334586 19 q13.31 49337.617 49337.617 0.0100460212MET NM_000245 Hs.132966 7 q31.2 116099.694 116099.694 0.0100935689

RASSF7 NM_003475 Hs.72925 11 p15.5 551.449 551.449 0.0101144532RAB6A NM_002869 Hs.12152 11 q13.4 73064.337 73064.337 0.0102815382PDCD5 NM_004708 Hs.443831 19 q13.11 37763.943 37763.943 0.0103367653MLH3 NM_001040108 Hs.436650 14 q24.3 74550.219 74550.219 0.0104502424

NCAPD2 NM_014865 Hs.5719 12 p13.31 6473.557 6473.557 0.0105005181EIF3S3 NM_003756 Hs.492599 8 q24.11 117726.236 117726.236 0.0106221435PROS1 NM_000313 Hs.64016 3 q11.2 95074.646 95074.646 0.0106258363SUGT1 NM_006704 Hs.281902 13 q14.3 52125.001 52125.001 0.0106534113

MICALL2 NM_024723 Hs.376617 7 p22.3 1440.527 1440.527 0.0107283932RDH14 NM_020905 Hs.288880 2 p24.2 18599.477 18599.477 0.0107202987

ADHFE1 NM_001077593 Hs.268869 8 q13.1 67507.286 67507.287 0.0108652953DIMT1L NM_014473 Hs.533222 5 q12.1 61720.108 61720.108 0.0108719136

LOC285636 NM_175921 Hs.29899 5 p13.1 41940.226 41940.226 0.0108003015RAB43 NM_198490 Hs.381132 3 q21.3 130289.107 130289.107 0.0108667128

LOC339123 NM_001005920 Hs.533771 16 p13.3 671.667 671.667 0.0109584876EIF2B5 NM_003907 Hs.283551 3 q27.1 185335.503 185335.503 0.0110175718INTS8 NM_017864 Hs.521693 8 q22.1 95904.709 95904.709 0.0113726735

CHST12 NM_018641 Hs.213088 7 p22.2 2409.784 2409.784 0.0112760089KIAA1267 NM_015443 Hs.644600 17 q21.31 41463.13 41463.13 0.0113860530SENP2 NM_021627 Hs.401388 3 q27.2 186786.724 186786.724 0.0112535350TANC1 NM_033394 Hs.158728 2 q24.1 159533.391 159533.391 0.0113960122

TMEM121 XM_001132455 Hs.157527 14 q32.33 105063.997 105063.997 0.0113068696PSMF1 NM_006814 Hs.471917 20 p13 1041.938 1047.244 0.0114582617ATP5F1 NM_001688 Hs.514870 1 p13.2 111793.265 111793.265 0.0118308810DOCK9 NM_015296 Hs.314413 13 q32.3 98243.744 98243.744 0.0116898293ENSA NM_004436 Hs.617755 1 q21.2 148861.224 148866.147 0.0117759058

PMS2L3 NM_001003686 Hs.225784 7 q11.23 74975.005 74975.005 0.0118176954POLA2 NM_002689 Hs.201897 11 q13.1 64786.007 64786.007 0.0117386433SBF1 NM_002972 Hs.589924 22 q13.33 49232.101 49232.101 0.0117608096TTF2 NM_003594 Hs.486818 1 p13.1 117404.471 117404.471 0.0117154619

ZNF702 NM_024924 Hs.270435 19 q13.41 58163.316 58163.316 0.0116032435ZMYND8 NM_012408 Hs.446240 20 q13.12 45271.787 45271.787 0.0119262824

RSU1 NM_012425 Hs.524161 10 p13 16672.624 16672.624 0.0119681870SEMA3C NM_006379 Hs.269109 7 q21.11 80209.79 80209.79 0.0119875604LENG1 NM_024316 Hs.590974 19 q13.42 59351.193 59351.193 0.0120268611DCP1B NM_152640 Hs.130934 12 p13.33 1925.476 1925.476 0.0121773533CENPQ NM_018132 Hs.88663 6 p12.3 49539.054 49539.054 0.0122510647OBFC1 NM_024928 Hs.134491 10 q24.33 105632.29 105632.29 0.0122499810SLC9A8 NM_015266 Hs.444202 20 q13.13 47862.656 47862.656 0.0123352738ZNF615 NM_198480 Hs.368355 19 q13.33 57186.399 57186.399 0.0123726579

LOC91431 NM_138698 Hs.444338 4 q25 113679.948 113679.948 0.0124087654CDC14B NM_001077181 Hs.40582 9 q22.33 98302.217 98302.217 0.0125961520

CEL NM_001807 Hs.533258 9 q34.2 134927.185 134927.185 0.0126803484CLK2 XM_001128256 Hs.73986 1 q22 153499.283 153499.283 0.0126567340HK1 NM_000188 Hs.370365 10 q21.3 70699.761 70748.628 0.0125309844

MPHOSPH1 NM_016195 Hs.240 10 q23.31 91451.346 91451.346 0.0126528390RAI16 NM_022749 Hs.491223 8 p21.3 22002.659 22002.659 0.0125973436

TRIM38 NM_006355 Hs.584851 6 p22.2 26071.049 26071.049 0.0125947651PAX8 NM_003466 Hs.469728 2 q13 113690.044 113690.044 0.0127325790MINA NM_001042533 NA 3 q11.2 99143.35 99143.35 0.0128103518PCTP NM_021213 Hs.285218 17 q22 51183.448 51183.448 0.0128753632WDR5 NM_017588 Hs.397638 9 q34.2 135991.03 135994.734 0.0129324245AK3L1 NM_001005353 Hs.10862 1 p31.3 65385.819 65386.473 0.0132589631CD58 NM_001779 Hs.34341 1 p13.1 116858.679 116858.679 0.0133006350CD9 NM_001769 Hs.114286 12 p13.31 6179.815 6179.815 0.0131067681

EBAG9 NM_004215 Hs.409368 8 q23.2 110621.104 110621.485 0.0133036913JAG2 NM_002226 Hs.155342 14 q32.33 104679.121 104679.121 0.0132196227

PTRH2 NM_001015509 Hs.12677 17 q23.1 55129.448 55129.448 0.0132210858SORBS2 NM_003603 Hs.481342 4 q35.1 186743.592 186743.592 0.0132364580ANKRD27 NM_032139 Hs.59236 19 q13.11 37779.746 37779.746 0.0134033520

STX16 NM_001001433 Hs.307913 20 q13.32 56659.733 56659.733 0.0134103342ALG9 NM_001077690 Hs.503850 11 q23.1 111158.129 111158.129 0.0134918466

TMEM77 NM_178454 Hs.485606 1 p13.3 111461.48 111461.48 0.0134988230KIAA0020 NM_014878 Hs.493309 9 p24.2 2794.154 2794.154 0.0135695318

B3GALNT2 NM_152490 Hs.585040 1 q42.3 233679.869 233679.869 0.0136485499EMP3 NM_001425 Hs.9999 19 q13.32 53520.453 53520.453 0.0138117033

SRBD1 NM_018079 Hs.14229 2 p21 45469.323 45469.323 0.0138201349SMC4 NM_001002799 Hs.58992 3 q26.1 161600.123 161601.04 0.0137573908BET1 NM_005868 Hs.489132 7 q21.3 93458.935 93458.935 0.0140249119

PAPSS2 NM_001015880 Hs.524491 10 q23.2 89409.455 89409.455 0.0140190550SUPT4H1 NM_003168 Hs.439481 17 q22 53777.537 53777.537 0.0140180509HMHA1 NM_012292 Hs.465521 19 p13.3 1018.173 1018.173 0.0140906594PTCH1 NM_000264 Hs.494538 9 q22.32 97246.22 97246.22 0.0141136938MPP6 NM_016447 Hs.533355 7 p15.3 24579.609 24579.609 0.0142442874

ZNF638 NM_001014972 Hs.434401 2 p13.3 71412.396 71412.396 0.0143020037ACBD3 NM_022735 Hs.520207 1 q42.12 224399.004 224399.004 0.0143702796ATP5F1 NM_001688 Hs.514870 1 p13.2 111793.265 111793.265 0.0143816196C12orf52 NM_032848 Hs.524762 12 q24.13 112107.937 112107.937 0.0146112623

CYB561D1 NM_182580 Hs.514682 1 p13.3 109838.244 109838.244 0.0149033948ZFP30 NM_014898 Hs.116622 19 q13.12 42815.228 42815.228 0.0146315539

MGC35402 NM_203307 Hs.446907 19 q13.41 58122.199 58122.199 0.0147147855MRPL48 NM_001030046 Hs.503239 11 q13.4 73176.008 73176.008 0.0147585137

MTX2 NM_001006635 Hs.470728 2 q31.1 176842.382 176842.382 0.0146703527PDCD4 NM_014456 Hs.232543 10 q25.2 112621.585 112621.585 0.0148344218RNUXA NM_032177 Hs.555731 5 q23.2 125964.531 125964.531 0.0148870629RPS27A NM_002954 Hs.311640 2 p16.1 55313.327 55313.327 0.0148149665SYPL1 NM_006754 Hs.80919 7 q22.2 105518.189 105518.189 0.0147269158VSTM1 NM_198481 Hs.444431 19 q13.42 59235.899 59235.899 0.0148994658WDR5 NM_017588 Hs.397638 9 q34.2 135991.03 135994.734 0.0148789149

FKBP1A NM_000801 Hs.471933 20 p13 1297.622 1300.377 0.0150911990FOXG1B NM_005249 Hs.632336 14 q12 28306.037 28306.037 0.0151479156

LOC130355 NM_001017927 Hs.99488 2 q14.2 119776.278 119776.278 0.0150462726PON2 NM_000305 Hs.530077 7 q21.3 94872.11 94872.11 0.0151212257RPS24 NM_001026 Hs.356794 10 q22.3 79463.579 79463.579 0.0150755964

C11orf51 NM_014042 Hs.38044 11 q13.4 71498.281 71498.281 0.0153101687C14orf93 NM_021944 Hs.255874 14 q11.2 22525.95 22525.95 0.0153481010DDX55 NM_020936 Hs.286173 12 q24.31 122652.624 122652.624 0.0153723378

C11orf59 NM_017907 Hs.530753 11 q13.4 71485.986 71485.986 0.0151995131SCYL1BP1 NM_152281 Hs.183702 1 q24.2 168767.893 168767.893 0.0152327535SMNDC1 NM_005871 Hs.632093 10 q25.2 112042.788 112042.788 0.0153281064PFDN4 NM_002623 Hs.91161 20 q13.2 52257.908 52257.908 0.0154319300NOLA1 NM_018983 Hs.69851 4 q25 110956.114 110956.114 0.0155288132

RAVER1 NM_133452 Hs.75516 19 p13.2 10287.888 10287.888 0.0155690834ZNF28 NM_006969 Hs.554778 19 q13.41 57992.473 57992.473 0.0159129088TMOD1 NM_003275 Hs.494595 9 q22.33 99326.257 99326.257 0.0159766257MRPL12 NM_002949 Hs.109059 17 q25.3 77280.811 77280.811 0.0160853882ZNHIT3 NM_001033577 Hs.2210 17 q12 31916.585 31916.585 0.0160811379ADM2 NM_024866 Hs.449099 22 q13.33 49266.877 49266.877 0.0163078853

C10orf28 NM_014472 Hs.419800 10 q24.2 99884.424 99884.424 0.0162830926C13orf27 NM_138779 Hs.398111 13 q33.1 102216.467 102216.467 0.0164427614EIF2B2 NM_014239 Hs.409137 14 q24.3 74539.364 74539.364 0.0165065476GAMT NM_000156 Hs.81131 19 p13.3 1348.088 1349.607 0.0166157630ACLY NM_001096 Hs.387567 17 q21.2 37276.706 37276.706 0.0167080718

FLJ45244 NM_207443 Hs.497573 14 q32.13 94713.572 94713.572 0.0168479337GBF1 NM_004193 Hs.290243 10 q24.32 103995.298 103995.298 0.0167510312GCA NM_012198 Hs.377894 2 q24.2 162908.895 162908.895 0.0168456638

MAPRE1 NM_012325 Hs.472437 20 q11.21 30871.434 30871.434 0.0167746583SLC30A6 NM_017964 Hs.23248 2 p22.3 32244.436 32244.436 0.0166714778CACNG6 NM_031897 Hs.631560 19 q13.42 59187.353 59187.353 0.0171334518HNRPH3 NM_012207 NA 10 q21.3 69761.884 69761.884 0.0170486196GDAP1 NM_001040875 Hs.168950 8 q21.11 75425.172 75425.207 0.0173442018LMTK3 XM_055866 Hs.207426 19 q13.32 53680.339 53680.339 0.0169859193MMAB NM_052845 Hs.12106 12 q24.11 108475.903 108475.903 0.0172549109MRPL4 NM_015956 Hs.279652 19 p13.2 10223.639 10223.639 0.0169552490

MRPL43 NM_032112 Hs.421848 10 q24.31 102727.568 102736.016 0.0170957750PSMA5 NM_002790 Hs.485246 1 p13.3 109746 109746 0.0173398455SERP1 NM_014445 Hs.518326 3 q25.1 151742.47 151742.47 0.0171472523TAF1B NM_005680 Hs.631902 2 p25.1 9901.023 9901.023 0.0172026723

TMEM63A NM_014698 Hs.119387 1 q42.12 224099.862 224099.862 0.0173487333WNK1 NM_018979 Hs.356604 12 p13.33 732.992 732.992 0.0171700486PYY NM_004160 Hs.169249 17 q21.31 39385.632 39385.632 0.0174001155

CBARA1 NM_006077 Hs.524367 10 q22.1 73797.103 73797.103 0.0175590543YWHAZ NM_003406 Hs.492407 8 q22.3 102000.089 102000.089 0.0175467307DDX20 NM_007204 Hs.591405 1 p13.2 112099.776 112099.776 0.0176223195

ADIPOR2 NM_024551 Hs.371642 12 p13.33 1670.507 1670.507 0.0182161524C10orf65 NM_138413 Hs.180346 10 q24.1 99334.11 99334.11 0.0180539036

CROP NM_006107 Hs.130293 17 q21.33 46151.975 46151.975 0.0185111751DYNC2LI1 NM_001012665 Hs.371597 2 p21 43854.685 43854.685 0.0181733055

EIF2A NM_032025 Hs.378808 3 q25.1 151747.263 151747.263 0.0178691929ELK4 NM_001973 Hs.497520 1 q32.1 203851.859 203855.02 0.0181242218

FADS3 NM_021727 Hs.21765 11 q12.2 61397.574 61397.574 0.0185763554GDAP2 NM_017686 Hs.632427 1 p12 118213.562 118213.562 0.0177961837GDPD5 NM_030792 Hs.503297 11 q13.4 74823.333 74823.333 0.0185918449

GLTSCR2 NM_015710 Hs.421907 19 q13.32 52940.619 52940.619 0.0183057436HOXA5 NM_019102 Hs.533357 7 p15.2 27147.52 27147.52 0.0185984313

LGALS3BP NM_005567 Hs.514535 17 q25.3 74478.932 74478.932 0.0180599138RXFP1 NM_021634 Hs.591686 4 q32.1 159662.496 159662.496 0.0184413314LYRM5 NM_001001660 Hs.209151 12 p12.1 25239.416 25239.416 0.0177757966MCEE NM_032601 Hs.94949 2 p13.3 71190.326 71190.326 0.0179751295MSX2 NM_002449 Hs.89404 5 q35.2 174084.18 174084.18 0.0180474681

NDUFB8 NM_005004 Hs.523215 10 q24.31 102273.487 102273.487 0.0183340381ORC5L NM_002553 Hs.432948 7 q22.1 103554.023 103595.86 0.0184285059SIRPA NM_001040022 Hs.581021 20 p13 1822.812 1823.825 0.0185540034PTPRK NM_002844 Hs.155919 6 q22.33 128331.624 128331.624 0.0186355129RPL39L NM_052969 Hs.647900 3 q27.3 188321.434 188321.434 0.0184386633SERBP1 NM_001018067 Hs.530412 1 p31.3 67646.082 67646.082 0.0185594386

UBC XM_001132949 Hs.520348 12 q24.31 123962.146 123962.146 0.0177846452WRNIP1 NM_020135 Hs.236828 6 p25.2 2710.664 2710.664 0.0180905208ZNF326 NM_181781 Hs.306221 1 p22.2 90233.267 90233.268 0.0181152798ZNF608 NM_020747 Hs.266616 5 q23.2 124000.508 124000.508 0.0178101520ZNF512 NM_032434 Hs.529178 2 p23.3 27659.396 27659.396 0.0187163473DKK1 NM_012242 Hs.40499 10 q21.1 53744.046 53744.046 0.0190372365

DOT1L NM_032482 Hs.591379 19 p13.3 2115.147 2115.147 0.0191456420FUT4 NM_002033 Hs.390420 11 q21 93916.774 93916.774 0.0191649653

BCAR3 NM_003567 Hs.36958 1 p22.1 93799.937 93799.937 0.0188471520CCDC97 NM_052848 Hs.437497 19 q13.2 46507.933 46507.933 0.0188991046MLLT10 NM_001009569 Hs.30385 10 p12.31 21863.107 21863.579 0.0191477564MLLT11 NM_006818 Hs.75823 1 q21.2 149298.774 149298.774 0.0188155465

SLC25A29 NM_001039355 Hs.578109 14 q32.2 99827.207 99827.207 0.0191162039SNRPB2 NM_003092 Hs.280378 20 p12.1 16658.628 16658.628 0.0189554057

SAE2 NM_005499 Hs.631580 19 q13.11 39611.107 39611.107 0.0190237533VPS24 NM_001005753 Hs.591582 2 p11.2 86584.064 86584.064 0.0191825404APPL2 NM_018171 Hs.506603 12 q23.3 104091.204 104091.204 0.0193070120DPH5 NM_001077394 Hs.440776 1 p21.2 101227.77 101227.77 0.0193270216FDPS NM_002004 Hs.335918 1 q22 153546.2 153546.2 0.0193575049

KIAA1128 NM_018999 Hs.461988 10 q23.1 86078.389 86078.389 0.0194346617BCAS4 NM_001010974 Hs.651208 20 q13.13 48844.873 48844.873 0.0196729597GNAI3 NM_006496 Hs.73799 1 p13.3 109892.823 109892.823 0.0196024729LGP2 NM_024119 Hs.55918 17 q21.2 37506.951 37506.951 0.0196030978

RASA2 NM_006506 Hs.98445 3 q23 142688.615 142688.615 0.0197278581RTKN NM_001015055 Hs.192854 2 p13.1 74506.496 74506.496 0.0196743430

SLC35C2 NM_015945 Hs.517080 20 q13.12 44411.584 44411.584 0.0197150303B4GALNT4 XM_001129003 Hs.148074 11 p15.5 359.803 359.803 0.0198041807

MRPL30 NM_145212 Hs.590896 2 q11.2 99164.009 99164.009 0.0198194664CEPT1 NM_001007794 Hs.363572 1 p13.3 111483.771 111484.355 0.0200413533

COX6B1 NM_001863 Hs.431668 19 q13.12 40830.994 40830.994 0.0201581911DHX29 NM_019030 Hs.444208 5 q11.2 54587.83 54587.83 0.0200842901PRMT1 NM_001536 Hs.20521 19 q13.33 54872.354 54872.354 0.0201867461PXMP4 NM_007238 Hs.516986 20 q11.22 31754.211 31754.211 0.0200837885

ZFX NM_003410 Hs.336681 23 p22.11 24079.728 24079.728 0.0201789950ZNF224 NM_013398 Hs.585869 19 q13.31 49290.336 49290.336 0.0202545529C19orf48 NM_199249 Hs.256301 19 q13.33 55992.772 55992.772 0.0203610538

PARL NM_001037639 Hs.478469 3 q27.1 185029.867 185029.867 0.0203444932LSM5 NM_012322 Hs.424908 7 p14.3 32492.943 32492.943 0.0205279265CTH NM_001902 Hs.19904 1 p31.1 70649.542 70649.542 0.0206512967

ADCY3 NM_004036 Hs.467898 2 p23.3 24895.544 24895.544 0.0208419239CYP1B1 NM_000104 Hs.154654 2 p22.2 38148.249 38148.249 0.0208337626DNAJC11 NM_018198 Hs.462640 1 p36.31 6616.817 6616.817 0.0208680099LOC92345 NM_138386 Hs.129095 4 q32.2 164269.274 164269.274 0.0212094410

MCL1 NM_021960 Hs.632486 1 q21.2 148813.66 148813.66 0.0211829601VANGL1 NM_138959 Hs.515130 1 p13.1 115986.096 115986.096 0.0210317902VDAC2 NM_003375 Hs.355927 10 q22.2 76640.568 76640.568 0.0211166745VPS36 NM_016075 Hs.109520 13 q14.3 51884.739 51884.739 0.0211912168

YEATS4 NM_006530 Hs.4029 12 q15 68039.798 68039.798 0.0211799223ZNF813 NM_001004301 Hs.433293 19 q13.41 58662.811 58662.811 0.0213903935NSUN6 NM_182543 Hs.396175 10 p12.33 18874.496 18874.496 0.0215090935RBM4 NM_002896 Hs.533712 11 q13.1 66162.713 66162.713 0.0215057545AK3L2 NM_001002921 Hs.10862 1 p31.3 65386.678 65386.678 0.0215521937

GOLT1B NM_016072 Hs.62275 12 p12.1 21546.066 21546.066 0.0216133398SAT1 NM_002970 Hs.28491 23 p22.11 23711.224 23711.224 0.0217137214

ZNF37A NM_001007094 Hs.292575 10 p11.21 38423.28 38423.28 0.0217026445FAM76B NM_144664 Hs.288304 11 q21 95141.764 95141.764 0.0217816790BCAS2 NM_005872 Hs.22960 1 p13.2 114911.705 114911.705 0.0220487807DUS1L NM_022156 Hs.514599 17 q25.3 77609.04 77609.04 0.0218967174

MGC11102 NM_032325 Hs.425178 11 q13.1 65520.592 65520.592 0.0220181258SRP19 NM_003135 NA 5 q22.2 112224.891 112224.891 0.0219970078

SYK NM_003177 Hs.371720 9 q22.2 92603.89 92603.89 0.0219405614ZNF419 NM_024691 Hs.125829 19 q13.43 62690.944 62690.944 0.0219664771

PLEKHJ1 NM_018049 Hs.501353 19 p13.3 2184.154 2184.154 0.0222041482PPM1B NM_001033556 Hs.416769 2 p21 44249.503 44249.503 0.0221831794PRAF2 NM_007213 Hs.29595 23 p11.23 48815.763 48815.763 0.0222384532LPIN1 NM_145693 Hs.467740 2 p25.1 11804.19 11804.19 0.0223331449HIP1R XM_001132864 Hs.524815 12 q24.31 121885.991 121885.991 0.0226306608

LOC92270 NM_001017971 Hs.364045 5 q14.2 81636.921 81636.921 0.0226110855RNF149 NM_173647 Hs.142074 2 q11.2 101258.984 101258.984 0.0225817884

LOC339745 NM_001001664 Hs.333297 2 q22.1 138975.84 138975.84 0.0228054629NMD3 NM_015938 Hs.91384 3 q26.1 162421.792 162421.792 0.0229252142

SLC4A1AP NM_018158 Hs.306000 2 p23.2 27739.841 27739.841 0.0229816160FBLN1 NM_001996 Hs.24601 22 q13.31 44277.382 44277.382 0.0231675221C2orf44 NM_025203 Hs.24624 2 p23.3 24105.749 24105.749 0.0234284821SIPA1L3 NM_015073 Hs.128627 19 q13.13 43089.707 43089.707 0.0235209085RAB38 NM_022337 Hs.591975 11 q14.2 87486.078 87486.078 0.0235683320EPN1 NM_013333 Hs.279953 19 q13.42 60878.403 60878.403 0.0237197756

C1orf142 NM_053052 Hs.325081 1 q42.13 225989.319 225989.319 0.0243094650COX8A NM_004074 Hs.433901 11 q13.1 63498.654 63498.654 0.0242195366

CTH NM_001902 Hs.19904 1 p31.1 70649.542 70649.542 0.0240120586NELL2 NM_006159 Hs.505326 12 q12 43188.331 43188.331 0.0243446623PCAF XM_001130666 Hs.533055 3 p24.3 20056.527 20056.527 0.0242673097

PDE9A NM_001001567 Hs.473927 21 q22.3 42946.93 42946.93 0.0243420733SF1 NM_004630 Hs.502829 11 q13.1 64288.653 64300.093 0.0240609831

THAP7 NM_001008695 Hs.512756 22 q11.21 19684.06 19684.06 0.0242955114TMEM39A NM_018266 Hs.434927 3 q13.33 120632.39 120632.39 0.0241178310

USH1G NM_173477 Hs.376688 17 q25.1 70423.77 70423.77 0.0242432101ZRANB1 NM_017580 Hs.595158 10 q26.13 126620.681 126620.681 0.0243437584BTBD6 NM_033271 Hs.7367 14 q32.33 104786.052 104786.052 0.0244787231

KIAA1627 NM_020961 Hs.480603 4 q26 119826.021 119826.021 0.0244644399CNNM4 NM_020184 Hs.175043 2 q11.2 96790.365 96790.365 0.0245791450DDEF2 NM_003887 Hs.555902 2 p25.1 9264.344 9264.344 0.0247787722CLIP2 NM_003388 Hs.647018 7 q11.23 73341.74 73341.74 0.0250720540INTS6 NM_001039937 Hs.439440 13 q14.3 50833.702 50921.623 0.0249772427LIN7B NM_022165 Hs.221737 19 q13.33 54309.429 54309.429 0.0250832501PIAS3 NM_006099 Hs.435761 1 q21.1 144287.344 144287.344 0.0250133837PIGM NM_145167 Hs.552810 1 q23.2 158264.085 158264.085 0.0250988690STX17 NM_017919 Hs.591900 9 q31.1 101708.786 101708.786 0.0249081395C2orf49 NM_024093 Hs.549577 2 q12.2 105320.444 105320.444 0.0252470173ROD1 NM_005156 Hs.269988 9 q32 114020.538 114020.538 0.0252183309CTTN NM_005231 Hs.632133 11 q13.3 69922.291 69922.291 0.0253462666

HIST2H3PS2 NM_001025303 Hs.585427 1 q21.1 147666.756 147666.756 0.0253391088C12orf45 NM_152318 Hs.295563 12 q23.3 103904.227 103904.227 0.0254711498C17orf62 NM_001033046 Hs.163113 17 q25.3 77993.808 77993.808 0.0255098478

ARSJ NM_024590 Hs.22895 4 q26 115040.888 115040.888 0.0257354896ASPSCR1 XM_001132706 Hs.298351 17 q25.3 77528.714 77528.714 0.0257357727

ATP5H NM_001003785 Hs.514465 17 q25.1 70546.549 70546.549 0.0258373275RRP15 NM_016052 Hs.408101 1 q41 216525.274 216525.274 0.0258340889

CIT NM_007174 Hs.119594 12 q24.23 118607.98 118607.98 0.0258322388NOL8 NM_017948 Hs.442199 9 q22.31 94099.461 94099.461 0.0258360594PPA1 NM_021129 Hs.437403 10 q22.1 71632.591 71632.591 0.0258665069

AP3S1 NM_001002924 Hs.406191 5 q23.1 115205.517 115205.517 0.0260295919EPB41L5 NM_020909 Hs.369232 2 q14.2 120487.138 120487.138 0.0259390569GOSR2 NM_001012511 Hs.463278 17 q21.32 42355.484 42355.484 0.0261042015DPP10 NM_001004360 Hs.591555 2 q14.1 114916.368 115636.201 0.0261118942ZNF567 NM_152603 Hs.412517 19 q13.12 41872.141 41872.141 0.0260750802C1QDC1 NM_001002259 Hs.234355 12 p11.21 30753.752 30753.752 0.0263826627DYNC1I2 NM_001378 Hs.546250 2 q31.1 172252.227 172252.227 0.0262278780PIK3CD NM_005026 Hs.518451 1 p36.22 9634.389 9634.389 0.0262836616

TACSTD1 NM_002354 Hs.645285 2 p21 47449.97 47449.97 0.0263749550ZC3H3 NM_015117 Hs.521915 8 q24.3 144590.974 144590.974 0.0263007872ABL1 NM_005157 Hs.431048 9 q34.12 132579.088 132700.651 0.0265346367

ACTR3 NM_005721 Hs.433512 2 q14.1 114364.006 114364.006 0.0265611366ARV1 NM_022786 Hs.275736 1 q42.2 229181.445 229181.445 0.0267321760

IFITM3 NM_021034 Hs.374650 11 p15.5 309.668 309.668 0.0267343283MKI67IP NM_032390 Hs.367842 2 q14.3 122201.023 122201.023 0.0267780670NFYB NM_006166 Hs.84928 12 q23.3 103034.987 103034.987 0.0264798804NUP62 NM_012346 Hs.574492 19 q13.33 55101.893 55101.893 0.0267732909PSMC5 NM_002805 Hs.79387 17 q23.3 59258.541 59258.541 0.0267236266C8orf76 NM_032847 Hs.521800 8 q24.13 124301.411 124301.411 0.0268676907DIP2B NM_173602 Hs.505516 12 q13.13 49185.034 49185.034 0.0268879535UPK1B NM_006952 Hs.271580 3 q13.32 120375.114 120375.114 0.0269435001

BAD NM_004322 Hs.370254 11 q13.1 63793.877 63793.877 0.0270359810ITCH NM_031483 Hs.632272 20 q11.22 32414.744 32414.744 0.0270339156

SBNO1 NM_018183 Hs.577403 12 q24.31 122346.408 122346.408 0.0271833821AASS NM_005763 Hs.156738 7 q31.32 121503.422 121503.422 0.0272753600

SLFN12 NM_018042 Hs.462829 17 q12 30762.202 30762.202 0.0273235061OGDH NM_001003941 Hs.488181 7 p13 44612.695 44612.695 0.0273456008UBTD1 NM_024954 Hs.500724 10 q24.1 99248.757 99248.757 0.0274511452PDIA5 NM_006810 Hs.477352 3 q21.1 124268.654 124268.654 0.0275697214CIAO1 NM_004804 Hs.12109 2 q11.2 96295.61 96295.61 0.0276051837

WHSC1 NM_001042424 Hs.113876 4 p16.3 1842.92 1910.805 0.0275261353NLK NM_016231 Hs.208759 17 q11.2 23393.311 23393.311 0.0276682040

ATP6V1C1 NM_001007254 Hs.86905 8 q22.3 104102.444 104102.444 0.0277196873ANKRD16 NM_001009941 Hs.289828 10 p15.1 5943.696 5960.058 0.0281620352C5orf28 NM_022483 Hs.558531 5 p12 43480.11 43480.11 0.0281569870NME2 NM_001018137 Hs.463456 17 q21.33 46597.889 46599.081 0.0282233940

C19orf22 NM_138774 Hs.557655 19 p13.3 847.502 847.502 0.0285618845ZNF746 NM_152557 Hs.24643 7 q36.1 148800.818 148800.818 0.0284748869IKZF3 NM_012481 Hs.444388 17 q12 35174.726 35174.726 0.0285573494

ZNF622 NM_033414 Hs.60300 5 p15.1 16504.628 16504.628 0.0287309745DHX37 NM_032656 Hs.107382 12 q24.31 123997.325 123997.325 0.0288297354PRRC1 NM_130809 Hs.483259 5 q23.2 126881.246 126881.246 0.0289251073

KIAA0913 NM_001010864 Hs.65135 10 q22.2 75215.61 75215.61 0.0289096881PDCD2L NM_032346 Hs.515344 19 q13.11 39587.142 39587.142 0.0290517552MYNN NM_018657 Hs.507025 3 q26.2 170973.546 170973.546 0.0290031113

ARMC10 NM_031905 Hs.287412 7 q22.1 102502.563 102502.563 0.0290093195TBC1D8 NM_007063 Hs.442657 2 q11.2 100990.122 100990.122 0.0291195455ATP5S NM_001003803 Hs.438489 14 q22.1 49848.796 49848.796 0.0292563720

C17orf70 NM_025161 Hs.313905 17 q25.3 77117.387 77117.387 0.0293607343FLJ20323 NM_019005 Hs.520215 7 p21.3 7573.14 7573.14 0.0296062073HAGHL NM_032304 Hs.124015 16 p13.3 716.958 717.266 0.0294767589MIDN NM_177401 Hs.465529 19 p13.3 1199.551 1199.551 0.0296157769

MGAT4C NM_013244 Hs.126195 12 q21.31 84896.655 84896.655 0.0295862189SEMA4D NM_006378 Hs.494406 9 q22.2 91181.971 91181.971 0.0294956142NDFIP2 NM_019080 Hs.525093 13 q31.1 78953.287 78953.287 0.0297522688TUBB6 XM_001131046 Hs.193491 18 p11.21 12298.256 12298.256 0.0297560640MOCS2 NM_004531 Hs.163645 5 q11.2 52429.653 52429.653 0.0298417169MYST4 NM_012330 Hs.35758 10 q22.2 76256.384 76256.384 0.0298953772RSBN1 NM_018364 Hs.486285 1 p13.2 114105.977 114105.977 0.0299194914RPS29 NM_001030001 Hs.156367 14 q22.1 49113.802 49120.04 0.0299657547

KIAA1754 NM_033397 Hs.523252 10 q25.1 106061.89 106061.89 0.0301250534YES1 NM_005433 Hs.194148 18 p11.32 711.593 711.593 0.0300943021

LRRC45 XM_001128724 Hs.143774 17 q25.3 77574.568 77574.568 0.0304677648RBP1 NM_002899 Hs.529571 3 q23 140718.973 140718.973 0.0304911453CCT8 NM_006585 Hs.125113 21 q21.3 29350.52 29350.52 0.0305532584

MBTPS2 NM_015884 Hs.585245 23 p22.12 21767.674 21767.674 0.0306287406C19orf12 NM_001031726 Hs.529094 19 q12 34881.634 34881.634 0.0311643245DNTTIP2 NM_014597 Hs.85769 1 p22.1 94107.925 94107.925 0.0311273109FAM113B NM_138371 Hs.560100 12 q13.11 45896.318 45896.318 0.0311451306KBTBD2 NM_015483 Hs.372541 7 p14.3 32874.31 32874.31 0.0313164090CAMK2G NM_001222 Hs.523045 10 q22.2 75242.264 75242.264 0.0317259230CTNNBL1 NM_030877 Hs.472667 20 q11.23 35755.847 35755.847 0.0315067063MYO3B NM_138995 Hs.534101 2 q31.1 170742.9 170742.9 0.0317154479ITGB3 NM_000212 Hs.218040 17 q21.32 42686.206 42686.206 0.0316872322LARP5 NM_015155 Hs.631814 10 p15.3 845.483 845.483 0.0316719648NME1 NM_000269 Hs.463456 17 q21.33 46585.918 46585.918 0.0314061596PPIL3 NM_032472 Hs.121076 2 q33.1 201443.924 201443.924 0.0317321352

PTDSS1 NM_014754 Hs.292579 8 q22.1 97343.342 97343.342 0.0316452120C22orf9 NM_001009880 Hs.592207 22 q13.31 43966.786 43966.786 0.0318458065GBP1 NM_002053 Hs.62661 1 p22.2 89290.593 89290.593 0.0319130192PAIP1 XM_001128114 Hs.482038 5 p12 43562.126 43562.126 0.0320162712

ARFGEF1 NM_006421 Hs.411848 8 q13.2 68272.45 68272.45 0.0331237980ASB8 NM_024095 Hs.432699 12 q13.11 46827.841 46827.841 0.0328889360

ATP5D NM_001001975 Hs.418668 19 p13.3 1192.748 1192.748 0.0324835766C10orf12 NM_015652 Hs.14555 10 q24.1 98731.03 98731.03 0.0330844287CCDC18 NM_206886 Hs.310637 1 p22.1 93418.507 93418.507 0.0330893252

CDK5RAP2 NM_001011649 Hs.269560 9 q33.2 122190.968 122190.968 0.0331310181CUTC NM_015960 Hs.16606 10 q24.2 101481.992 101481.992 0.0322499450

FAM45A NM_207009 Hs.434241 10 q26.11 120853.6 120853.6 0.0328902230RNASEH2B NM_024570 Hs.306291 13 q14.3 50381.927 50381.927 0.0327922389

GAPVD1 NM_015635 Hs.495134 9 q33.3 127063.931 127063.931 0.0332119671GLT8D2 NM_031302 Hs.631650 12 q23.3 102906.894 102906.894 0.0330724008

MLF2 NM_005439 Hs.524214 12 p13.31 6727.43 6727.43 0.0327904580IFT74 NM_025103 Hs.145402 9 p21.2 26946.409 26946.409 0.0332021661

KIAA0157 NM_032182 Hs.280695 10 q26.13 126480.381 126480.381 0.0326384025EFCAB4A NM_173584 Hs.437594 11 p15.5 817.617 817.617 0.0326718957

MGMT NM_002412 Hs.501522 10 q26.3 131155.455 131155.455 0.0327522990MRPS16 NM_016065 Hs.180312 10 q22.2 74678.608 74678.608 0.0324958406PHF14 NM_001007157 Hs.159918 7 p21.3 10980.04 10980.04 0.0323231797

PRPF31 NM_015629 Hs.515598 19 q13.42 59310.648 59310.648 0.0331825827SFRS11 NM_004768 Hs.479693 1 p31.1 70443.952 70443.952 0.0324388002TRIM33 NM_015906 Hs.26837 1 p13.2 114736.923 114736.923 0.0327919963

UBC XM_001132949 Hs.520348 12 q24.31 123962.146 123962.146 0.0325180803ZNF8 NM_021089 Hs.590941 19 q13.43 63482.129 63482.129 0.0327176337

KIAA1706 NM_030636 Hs.487994 7 p14.2 36159.36 36159.36 0.0333008742ARFGAP1 NM_018209 Hs.25584 20 q13.33 61374.609 61374.609 0.0337292575ATP2B4 NM_001001396 Hs.343522 1 q32.1 201862.55 201862.55 0.0336493298NFE2L2 NM_006164 Hs.155396 2 q31.2 177803.284 177803.284 0.0335142730PARP1 NM_001618 Hs.177766 1 q42.12 224615.128 224615.128 0.0334773922PLD3 NM_001031696 Hs.257008 19 q13.2 45546.446 45557.388 0.0337386215RCN3 NM_020650 Hs.567550 19 q13.33 54722.686 54722.686 0.0336883668

TRIM45 NM_025188 Hs.301526 1 p13.1 117455.212 117455.212 0.0335774947ADRA1B NM_000679 Hs.368632 5 q33.3 159276.317 159276.317 0.0338681025CDCA4 NM_017955 Hs.34045 14 q32.33 104547.321 104547.321 0.0338323456DVL3 NM_004423 Hs.388116 3 q27.1 185355.977 185355.977 0.0339216276DCXR NM_016286 Hs.9857 17 q25.3 77587.046 77587.046 0.0340999278PDE9A NM_001001567 Hs.473927 21 q22.3 42946.93 42946.93 0.0340612240

C17orf32 NM_152464 Hs.368878 17 q11.2 23708.813 23708.813 0.0341830427MRPL27 NM_016504 Hs.7736 17 q21.33 45800.227 45800.227 0.0343039401FBXO21 NM_015002 Hs.159699 12 q24.22 116065.967 116065.967 0.0343582511

C14orf103 NM_018036 Hs.168241 14 q32.2 95817.348 95817.348 0.0344944039CLSTN1 NM_001009566 Hs.29665 1 p36.22 9711.666 9711.666 0.0347031519KIF5B NM_004521 Hs.591373 10 p11.22 32340.076 32340.076 0.0348308601

PABPC1 NM_002568 Hs.387804 8 q22.3 101784.319 101784.319 0.0348220218LCOR NM_032440 Hs.500695 10 q24.1 98582.726 98582.726 0.0351405947

SARM1 NM_015077 Hs.532781 17 q11.2 23723.252 23723.252 0.0350998880C17orf53 NM_024032 Hs.437059 17 q21.31 39574.851 39574.851 0.0352461924

PPIL5 NM_203466 Hs.451090 14 q22.1 49135.164 49135.164 0.0352245802WTIP XM_059037 Hs.585010 19 q13.11 39664.719 39664.719 0.0353128737

THUMPD2 NM_025264 Hs.468254 2 p22.1 39816.948 39816.948 0.0353789340C1orf131 NM_152379 Hs.556017 1 q42.2 229426.132 229426.132 0.0356308353

SLC25A39 NM_016016 Hs.514216 17 q21.31 39752.521 39752.521 0.0356253977P2RY11 NM_002566 Hs.14468 19 p13.2 10083.196 10083.196 0.0356173057PIWIL4 NM_152431 Hs.390420 11 q21 93940.181 93940.181 0.0356252009

LBP NM_004139 Hs.154078 20 q11.23 36408.298 36408.298 0.0358267074PPM1B NM_001033556 Hs.416769 2 p21 44249.503 44249.503 0.0358100433YPEL5 NM_016061 Hs.515890 2 p23.1 30223.331 30223.331 0.0358157238UCHL3 NM_006002 Hs.162241 13 q22.2 75021.927 75021.927 0.0358945466USP33 NM_015017 Hs.480597 1 p31.1 77934.263 77949.927 0.0360017487ABCA7 NM_019112 Hs.134514 19 p13.3 992.244 993.66 0.0361240692AMY1C NM_001008219 Hs.484588 1 p21.1 103999.825 104093.963 0.0361014906FHL2 NM_001039492 Hs.443687 2 q12.2 105343.716 105343.716 0.0362436570RALA NM_005402 Hs.6906 7 p14.1 39629.686 39629.686 0.0363655010

FLVCR NM_014053 Hs.7055 1 q32.3 211098.219 211098.219 0.0364639399MEF2D NM_005920 Hs.314327 1 q22 154700.143 154700.143 0.0365524758NIPBL NM_015384 Hs.481927 5 p13.2 36912.741 36912.741 0.0365565790

JARID1A NM_001042603 Hs.76272 12 p13.33 259.483 259.483 0.0366860043SIRT5 NM_012241 Hs.567431 6 p23 13682.811 13682.853 0.0366786318GPI NM_000175 Hs.466471 19 q13.11 39547.908 39547.908 0.0367619122

LCOR NM_032440 Hs.500695 10 q24.1 98582.726 98582.726 0.0369280370LOC728215 XM_001128712 Hs.535394 13 q33.3 106618.879 106618.879 0.0370984410

IGSF3 NM_001007237 Hs.171057 1 p13.1 116918.553 116918.553 0.0373656728PRDX3 NM_006793 Hs.523302 10 q26.11 120917.205 120917.205 0.0374911286

S100A13 NM_001024210 Hs.516505 1 q21.3 151857.903 151857.903 0.0375082329COL18A1 NM_030582 Hs.84190 21 q22.3 45649.524 45699.851 0.0376249338TARBP1 NM_005646 Hs.498115 1 q42.2 232593.683 232593.683 0.0376758921

PIGK NM_005482 Hs.178305 1 p31.1 77327.256 77327.256 0.0378058394C11orf35 NM_173573 Hs.560022 11 p15.5 544.857 544.857 0.0382406770C19orf19 NM_182577 Hs.104777 19 p13.3 414.359 414.359 0.0382430057

CHN1 NM_001025201 Hs.380138 2 q31.1 175372.337 175372.337 0.0382644249AMMECR1L NM_031445 Hs.546449 2 q14.3 128335.675 128335.675 0.0382195704

NMT2 NM_004808 Hs.60339 10 p13 15187.776 15187.776 0.0379408048RABL2A NM_007082 Hs.446425 2 q14.1 114101.353 114101.353 0.0381485494

RPS7 NM_001011 Hs.534346 2 p25.3 3600.727 3600.727 0.0381532980SF1 NM_004630 Hs.502829 11 q13.1 64288.653 64300.093 0.0380598794

STAMBP NM_006463 Hs.469018 2 p13.1 73909.593 73909.654 0.0382138434GLI2 NM_005270 Hs.111867 2 q14.2 121266.326 121266.326 0.0383203439

PRKAG2 NM_001040633 Hs.647072 7 q36.1 150884.135 150884.135 0.0383770245AAAS NM_015665 Hs.369144 12 q13.13 51987.507 51987.507 0.0384590727

FLJ10781 NM_018215 Hs.8395 19 q13.32 51661.588 51661.588 0.0384850693LOC51136 NM_016125 Hs.531701 17 q23.1 55384.505 55384.505 0.0385394219

AKT2 NM_001626 Hs.631535 19 q13.2 45431.555 45431.555 0.0386778209C1orf80 XM_001134276 Hs.156625 1 q41 220907.977 220907.977 0.0390225974EME1 NM_152463 Hs.514330 17 q21.33 45805.588 45805.588 0.0389894202FIGN NM_018086 Hs.593650 2 q24.3 164172.363 164172.363 0.0390193734

TRIM25 NM_005082 Hs.528952 17 q22 52320.268 52320.268 0.0390116567EPS8L2 XM_001129221 Hs.55016 11 p15.5 696.122 696.122 0.0391820459KISS1 NM_002256 Hs.95008 1 q32.1 202426.092 202426.092 0.0391950474

TADA2L NM_001488 Hs.500066 17 q12 32841.424 32841.424 0.0391746640RPS9 NM_001013 Hs.467284 19 q13.42 59396.537 59396.537 0.0394712192

ATP5G2 NM_001002031 Hs.524464 12 q13.13 52345.211 52345.211 0.0397351912NUPL2 NM_007342 Hs.408241 7 p15.3 23188.01 23188.01 0.0397378544PGAM5 XM_001126125 Hs.102558 12 q24.33 131797.508 131797.508 0.0398010083TRPC1 NM_003304 Hs.250687 3 q23 143925.955 143925.955 0.0397584172PPM1D NM_003620 Hs.591184 17 q23.2 56032.335 56032.335 0.0399492843RAI14 NM_015577 Hs.431400 5 p13.2 34692.274 34692.274 0.0400094214

RBM34 NM_015014 Hs.535224 1 q42.3 233361.572 233361.572 0.0399884597YME1L1 NM_014263 Hs.74647 10 p12.1 27439.39 27440.671 0.0400376014RPL31 NM_000993 Hs.469473 2 q11.2 100985.182 100985.182 0.0401456150

PSMC3IP NM_013290 Hs.652279 17 q21.31 37977.858 37977.878 0.0401380212IMPAD1 NM_017813 Hs.591872 8 q12.1 58037.821 58037.821 0.0402149897

KIAA0280 NM_015159 Hs.475334 11 q13.4 72794.675 72794.675 0.0403610261PRKAA1 NM_006251 Hs.43322 5 p13.1 40795.238 40795.238 0.0406128646REEP1 NM_022912 Hs.368884 2 p11.2 86294.632 86294.632 0.0405591267TMCC1 NM_001017395 Hs.477547 3 q21.3 130849.326 130849.326 0.0404542211TRIM23 NM_001656 Hs.792 5 q12.3 64921.264 64921.264 0.0406148886

TSN NM_004622 Hs.75066 2 q14.3 122229.59 122229.59 0.0405211657FLJ20628 NM_017910 Hs.468026 2 p23.2 28926.193 28926.193 0.0407950433

SPR NM_003124 Hs.301540 2 p13.2 72968.055 72968.055 0.0411043084STAM NM_003473 Hs.441498 10 p12.33 17726.129 17726.129 0.0411427547STC2 NM_003714 Hs.233160 5 q35.2 172674.331 172674.331 0.0411829607

C2orf37 NM_025000 Hs.413518 2 q31.1 171999.104 171999.104 0.0412494642OXR1 NM_181354 Hs.148778 8 q23.1 107739.269 107739.269 0.0413408897

SFT2D3 NM_032740 Hs.345849 2 q14.3 128175.066 128175.066 0.0413223657ZNF462 NM_021224 Hs.370379 9 q31.2 108665.198 108665.198 0.0414348990ATP5H NM_001003785 Hs.514465 17 q25.1 70546.549 70546.549 0.0415556238

LRRC33 NM_198565 Hs.478815 3 q29 197851.052 197851.052 0.0415443526ARHGAP22 NM_021226 Hs.435063 10 q11.22 49324.085 49324.085 0.0418718116

ADAR NM_001025107 Hs.12341 1 q21.3 152821.158 152821.158 0.0419354202PRCP NM_005040 Hs.523936 11 q14.1 82213.057 82213.057 0.0420185113TRAF4 NM_145751 Hs.8375 17 q11.2 24095.149 24095.149 0.0421097734ARL3 NM_004311 Hs.182215 10 q24.32 104423.478 104423.478 0.0421638820

PPP6C NM_002721 Hs.584019 9 q33.3 126951.229 126951.229 0.0422716793RBJ NM_016544 Hs.434993 2 p23.3 25020.008 25020.008 0.0423505504

FAM44B NM_138369 Hs.425091 5 q35.2 172967.149 172967.149 0.0424982950RBM15 NM_022768 Hs.435947 1 p13.3 110683.467 110683.467 0.0427184462

FCHSD2 NM_014824 Hs.577053 11 q13.4 72225.438 72225.438 0.0427782466HECTD2 NM_173497 Hs.535293 10 q23.32 93160.08 93160.081 0.0432148754FAM83H XM_001127427 Hs.67776 8 q24.3 144878.091 144878.091 0.0436836835

PKP4 NM_001005476 Hs.407580 2 q24.1 159021.721 159021.721 0.0435946713RHPN2 NM_033103 Hs.466435 19 q13.11 38161.338 38161.338 0.0437206900CLIP4 NM_024692 Hs.122927 2 p23.2 29191.821 29191.821 0.0437357633

SELPLG NM_003006 Hs.591014 12 q24.11 107539.81 107539.81 0.0436076449YAP1 NM_006106 Hs.503692 11 q22.1 101486.54 101486.54 0.0438020052

SETD3 NM_032233 Hs.510407 14 q32.2 98933.836 98945.894 0.0442829340SH3YL1 NM_015677 Hs.515951 2 p25.3 208.154 208.154 0.0443917251ATG3 NM_022488 Hs.477126 3 q13.2 113734.049 113734.049 0.0444547982

B3GNT1 NM_006876 Hs.8526 11 q13.1 65869.419 65869.419 0.0446238154MTERFD1 NM_015942 Hs.308613 8 q22.1 97320.82 97320.82 0.0452147930

NT5C NM_014595 Hs.67201 17 q25.1 70637.918 70637.918 0.0452587353NUP133 NM_018230 Hs.12457 1 q42.13 227643.667 227643.667 0.0452542056TCEB1 NM_005648 Hs.554594 8 q21.11 75021.187 75021.187 0.0450665257

UGCGL2 NM_020121 Hs.193226 13 q32.1 95251.838 95251.838 0.0451104678GPRC5C NM_018653 Hs.446438 17 q25.1 69939.261 69941.43 0.0454044302

RPL5 NM_000969 Hs.180946 1 p22.1 93070.181 93070.181 0.0454456991ARHGDIA NM_004309 Hs.159161 17 q25.3 77418.886 77418.886 0.0457191600

EHD2 NM_014601 Hs.631554 19 q13.32 52908.501 52908.501 0.0457028308LSM7 NM_016199 Hs.512610 19 p13.3 2272.521 2272.521 0.0458440912

POLR2H NM_006232 Hs.432574 3 q27.1 185563.887 185563.887 0.0458792646TUBGCP6 NM_001008658 Hs.336431 22 q13.33 48998.244 48998.244 0.0458823467

USP16 NM_001001992 Hs.99819 21 q21.3 29318.808 29318.808 0.0460396343EXT1 NM_000127 Hs.492618 8 q24.11 118880.782 118880.782 0.0462360663

C1orf69 NM_001010867 Hs.237017 1 q42.13 226420.138 226420.138 0.0463696301CCDC9 NM_015603 Hs.227782 19 q13.32 52451.631 52451.631 0.0463607788MBIP NM_016586 Hs.368647 14 q13.3 35837.521 35837.521 0.0465013953

NOC3L NM_022451 Hs.74899 10 q23.33 96082.978 96082.978 0.0466204336FKBP1A NM_000801 Hs.471933 20 p13 1297.622 1300.377 0.0469013820ANP32C NM_012403 Hs.632596 4 q32.3 165337.609 165337.609 0.0471796802IARS2 NM_018060 Hs.262823 1 q41 218334.077 218334.077 0.0471179794PVR NM_006505 Hs.171844 19 q13.31 49839.065 49839.065 0.0471295405

C17orf63 NM_001077498 Hs.564533 17 q11.2 24107.122 24107.122 0.0472675679TLCD1 NM_138463 Hs.499952 17 q11.2 24075.502 24075.502 0.0475157078TRIB2 NM_021643 Hs.652175 2 p25.1 12774.658 12774.658 0.0476132957

SUMO2 NM_001005849 Hs.380973 17 q25.1 70675.42 70675.42 0.0477253934B3GNT2 NM_006577 Hs.173203 2 p15 62276.765 62276.765 0.0478274650

ASS1 NM_000050 Hs.160786 9 q34.11 132309.914 132309.914 0.0479183150BAG5 NM_001015048 Hs.5443 14 q32.33 103092.641 103092.641 0.0481791752

DKFZP564O0523 NM_032120 Hs.21590 7 q21.2 91996.022 91996.022 0.0482345505DHRS13 NM_144683 Hs.631760 17 q11.2 24248.927 24248.927 0.0480746315RFNG XM_001132711 Hs.569700 17 q25.3 77599.067 77599.067 0.0482863666

SLC37A1 NM_018964 Hs.547009 21 q22.3 42792.81 42792.81 0.0480912585SNX11 NM_013323 Hs.15827 17 q21.32 43539.918 43539.945 0.0482362361ZNF137 NM_003438 Hs.373648 19 q13.41 57791.748 57791.748 0.0480617336C10orf35 NM_145306 Hs.522992 10 q21.3 71060.019 71060.019 0.0487710689C19orf2 NM_003796 Hs.466391 19 q12 35125.264 35125.264 0.0485823423CTBP1 NM_001012614 Hs.208597 4 p16.3 1195.227 1195.227 0.0486085647

FAM98C NM_174905 Hs.355162 19 q13.2 43585.614 43585.614 0.0489896077FBXO34 NM_017943 Hs.525348 14 q22.3 54807.831 54807.831 0.0488892458

FIGN NM_018086 Hs.593650 2 q24.3 164172.363 164172.363 0.0486631556GHITM NM_014394 Hs.352656 10 q23.1 85889.164 85889.164 0.0489495156RAB2A NM_002865 Hs.369017 8 q12.1 61592.112 61592.112 0.0490441779

MRPL45 XM_001126219 Hs.462913 17 q12 33706.516 33706.516 0.0488358413PAX8 NM_003466 Hs.469728 2 q13 113690.044 113690.044 0.0486675720

PDDC1 XM_001129857 Hs.218362 11 p15.5 757.223 757.223 0.0490836978PHGDHL1 NM_177967 Hs.508545 13 q32.3 98651.163 98651.163 0.0489580788

ROR1 NM_005012 Hs.128753 1 p31.3 64012.301 64012.301 0.0490666606SLC30A3 NM_003459 Hs.467981 2 p23.3 27330.944 27330.944 0.0484660946ACSL5 NM_016234 Hs.11638 10 q25.2 114123.905 114125.945 0.0492845337ARL8B NM_018184 Hs.250009 3 p26.2 5138.929 5138.929 0.0495644627BCAR3 NM_003567 Hs.36958 1 p22.1 93799.937 93799.937 0.0494898193

IXL NM_017592 Hs.611541 19 q13.2 44573.802 44573.802 0.0493848400RAB40B NM_006822 Hs.484068 17 q25.3 78208.237 78208.237 0.0495930509RPL23A NM_000984 Hs.419463 17 q11.2 24071.126 24071.126 0.0492109199SLC4A8 NM_001039960 Hs.370636 12 q13.13 50104.86 50104.86 0.0493390929TMCO1 NM_019026 Hs.93832 1 q24.1 163963.131 163963.131 0.0494342839UBE2W NM_001001481 Hs.128841 8 q21.11 74865.393 74865.393 0.0495335890

SLC30A1 NM_021194 Hs.519469 1 q32.3 209815.005 209815.005 0.0497651889

Supplementary Table 5: List of genes whose expression correlates with gene copy number gains and/ or amplification.

Supplementary Table 6: Gene networks identified as significantly enriched using the Ingenuity Pathways Analysis software based on the list of genes whose expression correlated with copy number gains and/ or gene amplification.

In bold, genes whose expression significantly correlated with copy number gains and/ or gene amplification.

symbol refseq unigene chromosome cytoband start (kb) end (kb) t.test.p.lossCOX8A NM_004074 Hs.433901 11 q13.1 63498.654 63498.654 0.0000000109

RAB6IP1 NM_015213 Hs.501857 11 p15.4 9116.948 9116.948 0.0000011859SWAP70 NM_015055 Hs.153026 11 p15.4 9642.203 9642.203 0.0000017617

RNMT NM_003799 Hs.592347 18 p11.21 13716.703 13716.703 0.0000024547CLYBL NM_138280 Hs.130690 13 q32.3 99056.936 99056.936 0.0000060401

SH3GLB1 NM_016009 Hs.136309 1 p22.3 86942.844 86942.844 0.0000101549AFG3L2 NM_006796 Hs.528996 18 p11.21 12319.107 12319.107 0.0000188878

ABI2 XM_001126750 Hs.471156 2 q33.2 203901.247 203901.247 0.0000192602SMPD1 NM_000543 Hs.498173 11 p15.4 6368.23 6368.23 0.0000192967

C20orf52 NM_080748 Hs.472564 20 q11.22 33750.645 33750.645 0.0000223272HDAC2 NM_001527 Hs.3352 6 q22.1 114364.021 114364.021 0.0000273914

NDUFA3 NM_004542 Hs.198269 19 q13.42 59297.971 59297.971 0.0000531195SMARCB1 NM_001007468 Hs.534350 22 q11.23 22459.149 22459.149 0.0000584402

CREB3 NM_006368 Hs.522110 9 p13.3 35722.316 35722.316 0.0000618549PEPD NM_000285 Hs.36473 19 q13.11 38569.698 38569.698 0.0000629598

CASP8AP2 NM_012115 Hs.558218 6 q15 90596.378 90596.378 0.0000748309SFRS14 NM_001017392 Hs.515271 19 p13.11 18962.702 18964.176 0.0000768947FBXW4 NM_022039 Hs.500822 10 q24.32 103360.411 103360.411 0.0000769633MED19 NM_153450 Hs.43619 11 q12.1 57227.764 57227.764 0.0000788104ZNF282 XM_001131412 Hs.490510 7 q36.1 148523.509 148523.509 0.0000844892CLYBL NM_138280 Hs.130690 13 q32.3 99056.936 99056.936 0.0000880881

HOMER1 NM_004272 Hs.591761 5 q14.1 78705.542 78705.542 0.0000948169METTL4 NM_022840 Hs.126888 18 p11.32 2527.529 2527.529 0.0001052564

ATPBD1B NM_018066 Hs.14333 1 p36.11 27078.459 27078.459 0.0001224951DTD1 NM_080820 Hs.434207 20 p11.23 18516.575 18516.575 0.0001233097

C11orf58 NM_014267 Hs.546339 11 p15.1 16716.769 16716.769 0.0001243458KLHL8 NM_020803 Hs.106601 4 q22.1 88301.237 88301.237 0.0001470317RHOG NM_001665 Hs.501728 11 p15.4 3804.787 3804.787 0.0001521360

ADARB1 NM_001033049 Hs.474018 21 q22.3 45318.942 45318.942 0.0001675532KIAA1012 NM_014939 Hs.202001 18 q12.1 27663.9 27663.9 0.0001715478

DSE NM_001080976 Hs.486292 6 q22.1 116707.975 116798.802 0.0001743681CROCC NM_014675 Hs.309403 1 p36.13 17121.031 17121.031 0.0001866761PCOLN3 NM_002768 Hs.589427 16 q24.3 88238.345 88238.345 0.0001879153

LEO1 NM_138792 Hs.567662 15 q21.2 50017.516 50017.516 0.0001887182BRD9 NM_001009877 Hs.449278 5 p15.33 916.855 916.855 0.0002000649PTPN2 NM_002828 Hs.123352 18 p11.21 12775.48 12783.247 0.0002056778

DCUN1D3 NM_173475 Hs.101007 16 p12.2 20776.899 20776.899 0.0002314050C1orf181 NM_017953 Hs.5111 1 p22.3 85891.079 85891.079 0.0002340338

LOC81691 NM_030941 Hs.177926 16 p12.2 20725.333 20725.333 0.0002364487ZCCHC3 NM_033089 Hs.28608 20 p13 226.203 226.203 0.0002431350PTCH1 NM_000264 Hs.494538 9 q22.32 97246.22 97246.22 0.0002448842TIGD7 NM_033208 Hs.161287 16 p13.3 3288.834 3288.834 0.0002526499

GABPB2 NM_002041 Hs.511316 15 q21.2 48356.681 48365.37 0.0002695363ZMIZ1 NM_020338 Hs.193118 10 q22.3 80591.875 80591.875 0.0002733940STT3A NM_152713 Hs.504237 11 q24.2 124967.966 124967.966 0.0002812947

SH3BGRL2 NM_031469 Hs.302772 6 q14.1 80397.718 80397.718 0.0002972941RBM26 NM_022118 NA 13 q31.1 78792.099 78792.099 0.0003164982

TNFSF5IP1 NM_020232 Hs.464652 18 p11.21 12693.063 12693.063 0.0003187747OAT NM_000274 Hs.523332 10 q26.13 126075.861 126075.861 0.0003270490

APOL2 NM_030882 Hs.474740 22 q12.3 34952.202 34952.202 0.0003328235BRI3 NM_015379 Hs.270570 7 q21.3 97748.922 97748.922 0.0003377982PFKL NM_001002021 Hs.255093 21 q22.3 44544.357 44544.357 0.0003434779PLDN NM_012388 Hs.7037 15 q21.1 43666.708 43666.708 0.0003511973

HMGCR NM_000859 NA 5 q13.3 74668.854 74668.854 0.0003556649YES1 NM_005433 Hs.194148 18 p11.32 711.593 711.593 0.0003846911UBE1 NM_003334 Hs.533273 23 p11.3 46935.203 46938.238 0.0003852742AUH NM_001698 Hs.175905 9 q22.31 93015.928 93015.928 0.0003970946

C11orf48 NM_024099 Hs.9061 11 q12.3 62186.864 62186.864 0.0004275135C6orf192 NM_052831 Hs.347144 6 q23.2 133132.199 133132.199 0.0004426829NEDD4L NM_015277 Hs.185677 18 q21.31 53862.777 53862.777 0.0004548631

NRP2 NM_003872 Hs.471200 2 q33.3 206255.468 206255.468 0.0004648797CDC26 NM_139286 Hs.195058 9 q32 115069.113 115069.113 0.0004732594PKN2 NM_006256 Hs.440833 1 p22.2 88922.509 88922.509 0.0004789374GSS NM_000178 Hs.82327 20 q11.22 32979.897 32979.897 0.0004879481

UCRC NM_001003684 Hs.284292 22 q12.2 28493.357 28493.357 0.0005358821SERF2 NM_001018108 Hs.424126 15 q15.3 41871.807 41871.807 0.0005544020WDR60 NM_018051 Hs.389945 7 q36.3 158342.029 158342.029 0.0005768284KATNA1 NM_007044 Hs.450175 6 q25.1 149957.864 149957.864 0.0005801533

KIAA0157 NM_032182 Hs.280695 10 q26.13 126480.381 126480.381 0.0005847834TLN1 NM_006289 Hs.471014 9 p13.3 35687.333 35687.333 0.0006226312SSR1 NM_003144 Hs.114033 6 p24.3 7232.802 7232.802 0.0006422537

ZADH2 NM_175907 Hs.591065 18 q22.3 71039.474 71039.474 0.0006448545STX8 NM_004853 Hs.431109 17 p13.1 9094.513 9094.513 0.0006541805

C10orf118 NM_018017 Hs.159066 10 q25.3 115871.963 115871.963 0.0006650868CSNK2B NM_001320 Hs.73527 6 p25.2-p21.33 2881.246 31741.635 0.0006751841

BAG4 NM_004874 Hs.194726 8 p12 38153.262 38153.262 0.0006927351BAT1 NM_004640 Hs.254042 6 p25.2-p21.33 2745.625 31605.976 0.0007264630PPA1 NM_021129 Hs.437403 10 q22.1 71632.591 71632.591 0.0007312378OGDH NM_001003941 Hs.488181 7 p13 44612.695 44612.695 0.0007562006HPS5 NM_007216 Hs.437599 11 p15.1 18256.792 18256.792 0.0007771985

CCNG2 NM_004354 Hs.13291 4 q21.1 78297.55 78297.55 0.0007984267CD164 NM_006016 Hs.520313 6 q21 109794.415 109794.415 0.0007985253PSMA1 NM_002786 Hs.102798 11 p15.2 14482.998 14482.998 0.0008041829

ABI2 XM_001126750 Hs.471156 2 q33.2 203901.247 203901.247 0.0008647502CCNDBP1 NM_012142 Hs.36794 15 q15.2 41264.831 41265.441 0.0008725865ATP6V0B NM_001039457 Hs.632406 1 p34.1 44213.188 44213.188 0.0008872266

HCST NM_001007469 Hs.117339 19 q13.12 41085.221 41085.221 0.0008949072PRKAA1 NM_006251 Hs.43322 5 p13.1 40795.238 40795.238 0.0008968458

AQR NM_014691 Hs.510958 15 q14 32935.844 32935.844 0.0009104917MFAP1 NM_005926 Hs.61418 15 q15.3 41884.026 41884.026 0.0009227662NUDT22 NM_032344 Hs.172847 11 q13.1 63750.337 63750.337 0.0009287061TCF12 NM_003205 Hs.511504 15 q21.3 54998.124 55298.946 0.0009715014

C18orf26 NM_173629 Hs.376146 18 q21.2 50409.387 50409.387 0.0009717090ZNF271 NM_006629 Hs.314246 18 q12.2 31124.297 31124.297 0.0009791025PRRT1 NM_030651 Hs.549204 6 p25.2-p21.32 3331.103 32224.118 0.0009841824CLTA NM_001076677 Hs.522114 9 p13.3 36180.891 36180.891 0.0009991732AGK NM_018238 NA 7 q34 140901.721 140901.721 0.0010004348

OCIAD2 NM_001014446 Hs.95835 4 p12 48582.163 48582.163 0.0010016331NDUFV2 NM_021074 Hs.464572 18 p11.22 9092.724 9092.724 0.0010019189MAPK7 NM_002749 Hs.150136 17 p11.2 19221.658 19222.399 0.0010182525TXNL1 NM_004786 Hs.114412 18 q21.31 52421.05 52421.05 0.0010526803LACE1 NM_145315 Hs.259666 6 q21 108722.79 108722.79 0.0010612045

TXN NM_003329 Hs.435136 9 q31.3 112046.13 112046.13 0.0010640315ZNF18 NM_144680 Hs.370473 17 p12 11821.486 11821.486 0.0010724300

GTPBP4 NM_012341 Hs.215766 10 p15.3 1024.348 1024.348 0.0011347868GOLGA1 NM_002077 Hs.133469 9 q33.3 126680.449 126680.449 0.0011658175MTMR15 NM_014967 Hs.584863 15 q13.2 28983.42 28983.42 0.0011872832ALG11 NM_001004127 Hs.512963 13 q14.3 51484.55 51484.55 0.0012291340PEX3 NM_003630 Hs.7277 6 q24.2 143813.809 143813.809 0.0012374449CLIC4 NM_013943 Hs.440544 1 p36.11 24944.434 24944.434 0.0012636194

VPS26B NM_052875 Hs.334684 11 q25 133599.77 133599.77 0.0013183113SLC39A6 NM_012319 Hs.79136 18 q12.2 31943.196 31943.196 0.0013530230

FKBP2 NM_004470 Hs.227729 11 q13.1 63764.988 63766.163 0.0013539564SRRM1 NM_005839 Hs.18192 1 p36.11 24842.18 24842.18 0.0013616830

MRPS18A NM_018135 Hs.520149 6 p21.1 43747.019 43747.019 0.0013934706NUP43 NM_198887 Hs.510375 6 q25.1 150087.151 150087.151 0.0014032282

MRPL17 NM_022061 Hs.523456 11 p15.4 6659.455 6659.455 0.0014381456C6orf134 NM_001031722 Hs.118354 6 p25.3-p21.33 1841.506 30702.641 0.0014790845FCHSD2 NM_014824 Hs.577053 11 q13.4 72225.438 72225.438 0.0014807640TRIM27 NM_030950 Hs.440382 6 p25.3-p22.1 128.127 28978.758 0.0014852101STOML1 NM_004809 Hs.194816 15 q24.1 72062.613 72062.613 0.0015260470

XAB1 NM_007266 Hs.18259 2 p23.2 27705.406 27705.406 0.0015282540PNKD NM_001077399 Hs.98475 2 q35 218843.358 218896.161 0.0015436943

FBXO7 NM_001033024 Hs.5912 22 q12.3 31200.706 31201.223 0.0015708206LONP2 NM_031490 Hs.295923 16 q12.1 46835.711 46835.711 0.0015712136CNOT7 NM_013354 Hs.598387 8 p22 17131.11 17133.392 0.0015713800TRIM27 NM_030950 Hs.440382 6 p25.3-p22.1 128.127 28978.758 0.0016082620

C16orf80 NM_013242 Hs.532755 16 q21 56704.997 56704.997 0.0016163622ARHGEF12 NM_015313 Hs.24598 11 q23.3 119713.155 119713.155 0.0016230418

SFRS14 NM_001017392 Hs.515271 19 p13.11 18962.702 18964.176 0.0016577617SHB NM_003028 Hs.521482 9 p13.2 37905.895 37905.895 0.0017495040

ASAH3L NM_001010887 Hs.41379 9 p22.1 19398.924 19398.924 0.0017607878GPS1 NM_004127 Hs.268530 17 q25.3 77603.051 77603.051 0.0017619450RPS6 NM_001010 Hs.408073 9 p22.1 19366.253 19366.253 0.0018100941

IRAK1BP1 NM_001010844 Hs.556018 6 q14.1 79633.907 79633.907 0.0018720310LMO4 NM_006769 Hs.436792 1 p22.3 87566.738 87566.738 0.0018855674

STXBP1 NM_001032221 Hs.288229 9 q34.11 129414.388 129414.388 0.0019144963NUDT21 NM_007006 Hs.528834 16 q13 55020.549 55020.549 0.0019160694HSDL1 NM_031463 Hs.555992 16 q24.1 82713.388 82713.388 0.0019582705LCMT1 NM_001032391 Hs.337730 16 p12.1 25030.547 25030.547 0.0019657967PCID2 NM_018386 Hs.508769 13 q34 112879.926 112879.926 0.0019675809CDK10 NM_052988 Hs.109 16 q24.3 88280.578 88280.578 0.0020049456

FLJ36874 NM_152716 Hs.591960 11 q12.1 59160.769 59160.769 0.0020747445SPG7 NM_003119 Hs.185597 16 q24.3 88102.305 88102.305 0.0020776016AVEN NM_020371 Hs.555966 15 q14 31945.72 31945.72 0.0021357747

FUBP1 NM_003902 Hs.567380 1 p31.1 78186.18 78186.18 0.0021656753SFXN3 NM_030971 Hs.283844 10 q24.31 102780.985 102780.985 0.0021691787HMGN3 NM_004242 Hs.77558 6 q14.1 79967.682 79967.682 0.0021864145CXXC1 NM_014593 Hs.180933 18 q21.1 46062.716 46062.716 0.0021901794GNL1 NM_005275 Hs.83147 6 p25.3-p21.33 1760.545 30621.674 0.0022017136

PANK2 NM_024960 Hs.516859 20 p13 3817.485 3818.462 0.0022176935NDUFB8 NM_005004 Hs.523215 10 q24.31 102273.487 102273.487 0.0022334504

LOC51035 NM_015853 Hs.351296 11 q12.3 62200.548 62200.548 0.0022619769YWHAH NM_003405 Hs.226755 22 q12.3 30670.478 30670.478 0.0022871412

PAN3 NM_175854 Hs.369984 13 q12.2 27646.416 27646.416 0.0023060337GRB10 NM_001001549 Hs.164060 7 p12.2 50625.259 50625.259 0.0023201589DNAL4 NM_005740 Hs.632766 22 q13.1 37504.458 37504.458 0.0023294970ELP4 NM_019040 Hs.175534 11 p13 31487.872 31487.872 0.0024053142

AP4M1 NM_004722 Hs.632317 7 q22.1 99537.115 99537.115 0.0024299621FZD1 NM_003505 Hs.94234 7 q21.13 90731.718 90731.718 0.0024431141

VPS11 NM_021729 Hs.234282 11 q23.3 118443.702 118443.702 0.0024504682KIAA0404 NM_015104 Hs.370671 11 q13.1 64418.594 64418.594 0.0024723976

ZRSR2 NM_005089 Hs.171909 23 p22.2 15718.515 15718.515 0.0024951310DAXX NM_001350 Hs.336916 6 p25.1-p21.32 4472.598 33394.378 0.0025201840LIN54 NM_194282 Hs.96952 4 q21.22 84065.151 84065.151 0.0026513044

GOSR2 NM_001012511 Hs.463278 17 q21.32 42355.484 42355.484 0.0026553662BBS2 NM_031885 Hs.333738 16 q13 55075.798 55075.798 0.0027046266

C10orf97 NM_024948 Hs.590985 10 p13 15860.18 15860.18 0.0027325895WHSC2 NM_005663 Hs.21771 4 p16.3 1954.249 1954.249 0.0027332187ZNF621 NM_198484 Hs.19977 3 p22.1 40541.507 40541.507 0.0027381974

FLJ20254 NM_017727 Hs.533934 2 p23.3 27109.325 27109.325 0.0027661476CNOT7 NM_013354 Hs.598387 8 p22 17131.11 17133.392 0.0028549126

ARL6IP5 NM_006407 Hs.518060 3 p14.1 69216.779 69216.779 0.0029496137NIPA1 NM_144599 Hs.511797 15 q11.2 20594.721 20594.721 0.0029513007

MAP3K4 NM_005922 Hs.390428 6 q26 161332.811 161332.811 0.0029584248SEC11C NM_033280 Hs.45107 18 q21.32 54958.104 54958.104 0.0029934768RAPH1 NM_025252 Hs.471162 2 q33.2 204006.785 204017.6 0.0029938742DYM NM_017653 Hs.162996 18 q21.1 44824.171 44824.171 0.0030069966TCP1 NM_001008897 Hs.363137 6 q25.3 160119.52 160119.52 0.0030208685

FBXL15 NM_024326 Hs.380081 10 q24.32 104169.578 104169.578 0.0030405975RPS16 NM_001020 Hs.397609 19 q13.2 44615.688 44615.688 0.0030578706

TMEM59 NM_004872 Hs.523262 1 p32.3 54269.938 54269.938 0.0030761978DPAGT1 NM_001382 Hs.524081 11 q23.3 118472.423 118472.423 0.0031940844BCKDK NM_005881 Hs.513520 16 p11.2 31027.248 31027.248 0.0032296501

POLR2J3 NM_001015884 Hs.530089 7 q22.1 101994.604 101994.604 0.0032357985KCTD2 XM_940854 Hs.514468 17 q25.1 70554.873 70554.873 0.0032504951

ANKRD6 NM_014942 Hs.651107 6 q15 90199.65 90199.65 0.0032586186ZNF532 NM_018181 Hs.529023 18 q21.32 54681.04 54681.04 0.0032661446CEP250 NM_001035518 Hs.443976 20 q11.22 33506.563 33506.563 0.0032740253KNTC2 NM_006101 Hs.414407 18 p11.32 2561.604 2561.604 0.0033116188

ALKBH5 NM_017758 Hs.462392 17 p11.2 18028.013 18028.013 0.0033490381ALG8 NM_001007027 Hs.503368 11 q14.1 77489.635 77489.635 0.0033811329

UBE3A NM_000462 Hs.22543 15 q11.2 23133.489 23133.489 0.0033841112RBJ NM_016544 Hs.434993 2 p23.3 25020.008 25020.008 0.0034344310

SMPD1 NM_000543 Hs.498173 11 p15.4 6368.23 6368.23 0.0034420593DNAJC4 NM_005528 Hs.172847 11 q13.1 63755.663 63755.663 0.0034891480ARVCF NM_001670 NA 22 q11.21 18337.42 18337.42 0.0035233168ZNF330 NM_014487 Hs.120766 4 q31.21 142361.546 142361.546 0.0035505538

AGTPBP1 NM_015239 Hs.494321 9 q21.33 87351.274 87351.274 0.0036883979WDR7 NM_015285 Hs.465213 18 q21.31 52469.613 52469.613 0.0037253920

PRKRIR NM_004705 Hs.503315 11 q13.5 75738.651 75738.651 0.0037468132SNAP23 NM_003825 Hs.511149 15 q15.1 40575.126 40575.126 0.0037751576SNAP23 NM_003825 Hs.511149 15 q15.1 40575.126 40575.126 0.0037954265PTPRA NM_002836 Hs.269577 20 p13 2792.84 2851.852 0.0038171609SDHA NM_004168 Hs.440475 5 p15.33 271.446 271.446 0.0038357446SIAE NM_170601 Hs.10056 11 q24.2 124010.903 124010.903 0.0038545523

SMARCAL1 NM_014140 Hs.516674 2 q35 216986.822 216986.822 0.0038547985KCTD1 NM_198991 Hs.526630 18 q11.2 22288.871 22288.871 0.0039007196

PPP2CB NM_001009552 Hs.491440 8 p12 30762.668 30762.668 0.0039099327EHD1 NM_006795 Hs.523774 11 q13.1 64376.783 64376.783 0.0039238243WTAP NM_004906 Hs.446091 6 q25.3 160068.141 160068.609 0.0039394211NF2 NM_000268 Hs.187898 22 q12.2 28329.564 28329.564 0.0039538258ILK NM_001014794 Hs.5158 11 p15.4 6581.539 6581.782 0.0039701788

UGCGL2 NM_020121 Hs.193226 13 q32.1 95251.838 95251.838 0.0040039086USP53 NM_019050 Hs.431081 4 q26 120380.362 120380.362 0.0040116205CCNG2 NM_004354 Hs.13291 4 q21.1 78297.55 78297.55 0.0040140714

PLEKHA4 NM_020904 Hs.9469 19 q13.33 54032.166 54032.166 0.0040623241NEU1 NM_000434 Hs.520037 6 p25.2-p21.32 3074.69 31934.931 0.0040967693

PDSS1 NM_014317 Hs.558468 10 p12.1 27026.6 27026.6 0.0040984116STAM NM_003473 Hs.441498 10 p12.33 17726.129 17726.129 0.0041029697

ZBTB44 NM_014155 Hs.647215 11 q24.3 129608.336 129608.336 0.0041070856DKK3 NM_001018057 Hs.292156 11 p15.3 11941.12 11941.12 0.0041270834

TMEM85 NM_016454 Hs.250905 15 q14 32304.536 32304.536 0.0041458101TIAL1 NM_001033925 Hs.501203 10 q26.11 121322.969 121322.969 0.0041726306

EARS2 NM_133451 Hs.620541 16 p12.1 23440.838 23440.838 0.0042341142ZNF75A NM_153028 Hs.513292 16 p13.3 3295.486 3295.486 0.0042698852VPS13A NM_001018037 Hs.459790 9 q21.13 78982.18 78982.18 0.0042707126CDK10 NM_052988 Hs.109 16 q24.3 88280.578 88280.578 0.0042802916

PTS NM_000317 Hs.503860 11 q23.1 111602.308 111602.308 0.0042979955C4orf18 NM_001031700 Hs.567498 4 q32.1 159265.212 159265.458 0.0043197954MED4 NM_014166 Hs.181112 13 q14.2 47548.092 47548.092 0.0043367614

TP53BP1 NM_005657 Hs.440968 15 q15.3 41486.698 41486.698 0.0043448765GTF3C4 NM_012204 Hs.22302 9 q34.13 134535.548 134535.548 0.0043898887DIS3L2 NM_152383 Hs.471637 2 q37.1 232534.637 232534.637 0.0043915542

SEC61A2 NM_018144 Hs.112955 10 p14 12211.703 12211.703 0.0044028097BCLAF1 NM_001077440 Hs.486542 6 q23.3 136619.693 136619.693 0.0045651309RKHD2 NM_016626 Hs.465144 18 q21.2 46954.919 46954.919 0.0045949819

EXOSC3 NM_001002269 Hs.591076 9 p13.2 37770.307 37770.307 0.0046079920NR2F2 NM_021005 NA 15 q26.2 94674.949 94674.949 0.0046126349

MAP2K1 NM_002755 Hs.145442 15 q22.31 64466.678 64466.678 0.0046257286NCOR1 XM_001133522 Hs.462323 17 p12 15875.983 15875.983 0.0046338022ZNF746 NM_152557 Hs.24643 7 q36.1 148800.818 148800.818 0.0046485913CCBL2 NM_001008661 Hs.481898 1 p22.2 89174.043 89174.043 0.0047045011E2F8 NM_024680 Hs.523526 11 p15.1 19202.193 19202.193 0.0047379464CUTA NM_001014433 Hs.520070 6 p21.32 33492.296 33492.296 0.0047843808

U2AF1L4 NM_001040425 Hs.351558 19 q13.12 40925.269 40925.269 0.0048083041KIAA0274 NM_014845 Hs.529959 6 q21 110119.16 110119.16 0.0049056938

INVS NM_014425 Hs.558477 9 q31.1 101901.331 101901.331 0.0049446617ZNF282 XM_001131412 Hs.490510 7 q36.1 148523.509 148523.509 0.0049683478BCKDHB NM_000056 Hs.436387 6 q14.1 80873.082 80873.082 0.0049683516

IDI1 NM_004508 Hs.283652 10 p15.3 1075.965 1075.965 0.0050072758ANKRD26 NM_014915 Hs.361041 10 p12.1 27334.444 27334.444 0.0050698707ZNF622 NM_033414 Hs.60300 5 p15.1 16504.628 16504.628 0.0050801593DNAJC1 NM_022365 Hs.499000 10 p12.31 22085.483 22085.483 0.0050903350

MLL NM_005933 Hs.258855 11 q23.3 117812.414 117812.414 0.0051053583MMS19L NM_022362 Hs.500721 10 q24.1 99208.07 99208.07 0.0051266918

SETX NM_015046 Hs.460317 9 q34.13 134126.648 134126.648 0.0051282097SPTY2D1 NM_194285 Hs.268668 11 p15.1 18584.524 18584.524 0.0051472938

RPA1 NM_002945 Hs.461925 17 p13.3 1680.094 1680.094 0.0052069452CLK3 NM_001292 Hs.584748 15 q24.1 72687.765 72687.765 0.0052131531

ZNF189 NM_003452 Hs.50123 9 q31.1 103200.983 103200.983 0.0052227435SFI1 NM_001007467 Hs.62209 22 q12.2 30222.26 30222.26 0.0052314400

LARP2 NM_018078 Hs.480712 4 q28.2 129201.952 129201.952 0.0052913319ZNF273 NM_021148 Hs.520889 7 q11.21 64001.054 64001.054 0.0052933134PALM NM_001040134 Hs.631841 19 p13.3 659.952 659.952 0.0053087725

EIF4ENIF1 NM_019843 Hs.517559 22 q12.2 30165.354 30165.354 0.0053110194ARSJ NM_024590 Hs.22895 4 q26 115040.888 115040.888 0.0053644664

NDUFA8 NM_014222 Hs.495039 9 q33.2 123946.16 123946.16 0.0053664744MKLN1 NM_013255 Hs.44693 7 q32.3 130663.177 130663.177 0.0054176005

UBE2D4 NM_015983 Hs.19196 7 p13 43932.571 43932.571 0.0054287561SCARB2 NM_005506 Hs.349656 4 q21.1 77298.917 77298.917 0.0054565502PHF21A NM_016621 Hs.502458 11 p11.2 45910.692 45910.692 0.0054672659STATIP1 NM_018255 Hs.8739 18 q12.2 31963.884 31963.884 0.0054843862NOLA3 NM_018648 Hs.14317 15 q14 32421.208 32421.208 0.0055428193

AKR7A2 NM_003689 Hs.571886 1 p36.13 19503.05 19503.05 0.0055459462RBBP9 NM_006606 Hs.69330 20 p11.23 18415.189 18415.189 0.0055797294RBM17 NM_032905 Hs.498548 10 p15.1 6171.012 6171.012 0.0055864244NCOA7 NM_181782 Hs.171426 6 q22.31 126143.999 126143.999 0.0055884207ACTR8 NM_022899 Hs.412186 3 p21.1 53876.194 53876.194 0.0055960578EEF1D NM_001960 Hs.333388 8 q24.3 144733.04 144733.04 0.0056519965

PAK1IP1 NM_017906 Hs.310231 6 p24.2 10803.173 10803.173 0.0056638956CCNB2 NM_004701 Hs.194698 15 q22.2 57184.611 57184.611 0.0056689797JOSD1 NM_014876 Hs.3094 22 q13.1 37411.572 37411.572 0.0058190297CLTCL1 NM_001835 Hs.368266 22 q11.21 17546.988 17546.988 0.0058472643DSG2 NM_001943 Hs.412597 18 q12.1 27332.169 27332.169 0.0059027101

RBM33 NM_001008408 Hs.591815 7 q36.3 155232.04 155232.04 0.0059369822RPS18 NM_022551 Hs.627414 6 p25.1-p21.32 4426.034 33347.829 0.0060096311SHMT1 NM_004169 Hs.513987 17 p11.2 18171.919 18171.919 0.0060118001PIK4CA XM_001131210 Hs.529438 22 q11.21 19391.99 19391.99 0.0060266026GTF2A2 NM_004492 Hs.512934 15 q22.2 57718.357 57718.357 0.0060615460TM2D3 NM_025141 Hs.288912 15 q26.3 99999.576 99999.576 0.0060749528

C20orf94 NM_001009608 Hs.5461 20 p12.2 10363.95 10363.95 0.0060781480VCP NM_007126 Hs.529782 9 p13.3 35046.56 35046.56 0.0060976898

MAF1 NM_032272 Hs.19673 8 q24.3 145231.292 145231.292 0.0061065342RRP12 NM_015179 Hs.434251 10 q24.1 99106.448 99106.448 0.0061272982

RPUSD4 NM_032795 Hs.150458 11 q24.2 125577.518 125577.518 0.0061286863C11orf31 NM_170746 Hs.166011 11 q12.1 57265.297 57265.297 0.0062449085ZNF609 NM_015042 Hs.595451 15 q22.31 62578.671 62578.671 0.0062530924

RTN3 NM_006054 Hs.473761 11 q13.1 63205.497 63205.497 0.0062611340PBK NM_018492 Hs.104741 8 p21.1 27723.058 27723.058 0.0063153124

C4orf18 NM_001031700 Hs.567498 4 q32.1 159265.212 159265.458 0.0063850975ANKFY1 NM_016376 Hs.513875 17 p13.2 4013.415 4044.523 0.0065208659PPARG NM_005037 Hs.162646 3 p25.2 12304.348 12368 0.0065439381MEST NM_002402 Hs.270978 7 q32.2 129913.281 129919.173 0.0065479787

GABARAP NM_007278 Hs.647421 17 p13.1 7084.462 7084.462 0.0067795043KIAA0409 NM_015324 Hs.652255 11 p15.4 6577.729 6577.729 0.0068370331

MASTL NM_032844 Hs.276905 10 p12.1 27484.297 27484.297 0.0068748908LIF NM_002309 Hs.2250 22 q12.2 28966.442 28966.442 0.0068793466

SLC35E4 NM_001001479 Hs.128688 22 q12.2 29361.792 29361.792 0.0068878857FOXO1A NM_002015 Hs.370666 13 q14.11 40027.818 40027.818 0.0069227899FAM105B NM_138348 Hs.406335 5 p15.2 14717.782 14717.782 0.0069488571ACTRT1 NM_138289 Hs.562009 23 q25 127012.625 127012.625 0.0069756115C8orf61 NM_001034061 Hs.591392 8 p23.3 1720.28 1720.28 0.0071349879THSD4 NM_024817 Hs.387057 15 q23 69220.841 69220.841 0.0071554295

C10orf78 NM_001002759 Hs.93667 10 q25.1 105871.805 105871.918 0.0071734897RIN2 NM_018993 Hs.472270 20 p11.23 19818.209 19818.209 0.0071994200

PIB5PA NM_001002837 Hs.517549 22 q12.2 29848.96 29848.96 0.0072819116DHFR NM_000791 Hs.83765 5 q14.1 79957.8 79957.8 0.0072984397CUTA NM_001014433 Hs.520070 6 p21.32 33492.296 33492.296 0.0073594813LAP3 NM_015907 Hs.570791 4 p15.32 17188.024 17188.024 0.0073751789CSTB NM_000100 Hs.695 21 q22.3 44018.259 44018.259 0.0074042279NRP2 NM_003872 Hs.471200 2 q33.3 206255.468 206255.468 0.0074179088AK5 NM_012093 Hs.559718 1 p31.1 77520.329 77520.874 0.0074571331

PRKX NM_005044 Hs.390788 23 p22.33 3532.412 3532.412 0.0075261911TELO2 NM_016111 Hs.271044 16 p13.3 1483.422 1483.422 0.0075271158CBX7 NM_175709 Hs.356416 22 q13.1 37856.733 37856.733 0.0075684962

YTHDC1 NM_001031732 Hs.175955 4 q13.2 68858.7 68858.7 0.0076279324IRS2 NM_003749 Hs.442344 13 q34 109204.184 109204.184 0.0076460405

MBTPS1 NM_003791 Hs.75890 16 q23.3 82644.871 82644.871 0.0076843126ZNF777 NM_015694 Hs.38512 7 q36.1 148759.392 148759.392 0.0077102641

ATE1 NM_001001976 Hs.632080 10 q26.13 123492.615 123492.615 0.0077804969CCBL1 NM_004059 Hs.495250 9 q34.11 130635.213 130635.213 0.0078411321AP4E1 NM_007347 Hs.413366 15 q21.2 48988.237 48988.237 0.0078572002TPP2 NM_003291 Hs.432424 13 q33.1 102047.373 102047.373 0.0078922336

GPSN2 XM_001132190 Hs.515642 19 p13.12 14501.381 14501.381 0.0079728966DCTN6 NM_006571 Hs.158427 8 p12 30133.354 30133.354 0.0080435075

C17orf45 NM_152350 Hs.368934 17 p11.2 16283.086 16283.086 0.0080935996FPGS NM_001018078 Hs.335084 9 q34.11 129604.974 129605.328 0.0081109960MIPEP NM_005932 Hs.507498 13 q12.12 23202.328 23202.328 0.0081625169PTOV1 NM_017432 Hs.587979 19 q13.33 55046.227 55046.227 0.0082216480

DCLRE1C NM_001033855 Hs.612774 10 p13 14988.878 14988.878 0.0083362824SMARCA5 NM_003601 Hs.589489 4 q31.21 144654.065 144654.065 0.0083414394

DRG1 NM_004147 Hs.115242 22 q12.2 30125.538 30125.538 0.0083508365OCIAD2 NM_001014446 Hs.95835 4 p12 48582.163 48582.163 0.0083964973BANF1 NM_003860 Hs.433759 11 q13.1 65526.125 65526.125 0.0084312876LRFN3 NM_024509 Hs.143792 19 q13.12 41119.861 41119.861 0.0084406157POLL NM_013274 Hs.523230 10 q24.32 103328.63 103328.63 0.0084605818

CCDC127 NM_145265 Hs.294145 5 p15.33 257.874 257.874 0.0084637170FUZ NM_025129 Hs.288800 19 q13.33 55001.96 55001.96 0.0085353591

ZC3H7A NM_014153 Hs.371856 16 p13.13 11751.943 11751.943 0.0085407156RUSC2 NM_014806 Hs.493796 9 p13.3 35480.123 35480.123 0.0085513672CYR61 NM_001554 Hs.8867 1 p22.3 85819.047 85819.047 0.0085591398NARS2 NM_024678 Hs.503389 11 q14.1 77824.89 77824.89 0.0086036151MFSD8 NM_152778 Hs.480701 4 q28.1 129061.026 129061.026 0.0086193266

HSPC268 NM_197964 Hs.370475 7 q34 138676.614 138676.614 0.0087149775NDUFB2 NM_004546 Hs.324250 7 q34 140042.949 140042.949 0.0087464894PARS2 NM_152268 Hs.380169 1 p32.3 54995.16 54995.16 0.0087481418

RP11-125A7.3 NM_001009814 Hs.368282 13 q14.11 41038.961 41191.474 0.0087826152RNF26 NM_032015 Hs.524084 11 q23.3 118710.446 118710.446 0.0089254442

GTF2H1 NM_005316 Hs.577202 11 p15.1 18300.718 18300.718 0.0089982238DDX3X XM_001129278 Hs.380774 23 p11.4 41077.594 41077.594 0.0090210276IGFBP6 NM_002178 Hs.274313 12 q13.13 51777.702 51777.702 0.0090257572H2AFY2 NM_018649 Hs.499953 10 q22.1 71482.362 71482.362 0.0090461204FGD1 NM_004463 Hs.652141 23 p11.22 54488.613 54488.613 0.0091252147ARSD NM_001669 NA 23 p22.33 2832.011 2841.654 0.0091573824POR NM_000941 Hs.354056 7 q11.23 75382.355 75382.355 0.0092056098

F2RL1 NM_005242 Hs.154299 5 q13.3 76150.609 76150.609 0.0092444630ICA1L NM_138468 Hs.516629 2 q33.1 203346.117 203398.419 0.0092541447ME2 NM_002396 Hs.233119 18 q21.2 46659.432 46659.432 0.0092762196

KCNK3 NM_002246 Hs.645288 2 p23.3 26769.122 26769.122 0.0092798809TPM2 NM_003289 Hs.300772 9 p13.3 35671.989 35672.923 0.0093066038SS18 NM_001007559 Hs.404263 18 q11.2 21850.216 21850.216 0.0093486491

CCDC125 NM_176816 Hs.482372 5 q13.2 68612.275 68612.275 0.0093673919TXNDC5 NM_022085 Hs.150837 6 p24.3 7826.752 7826.752 0.0094154459

PIGB NM_004855 Hs.285051 15 q21.3 53398.424 53398.424 0.0094668025SLC1A1 NM_004170 Hs.444915 9 p24.2 4480.443 4480.443 0.0095050855

FLJ14213 NM_024841 Hs.19987 11 p13 36354.13 36354.13 0.0095383045SMC1A NM_006306 Hs.211602 23 p11.22 53417.796 53417.796 0.0095418953AMD1 NM_001033059 Hs.159118 6 q21 111302.679 111302.68 0.0095968911

DNAJB14 NM_001031723 Hs.577426 4 q23 101039.587 101040.704 0.0096625962ATG16L2 NM_033388 NA 11 q13.4 72203.098 72203.098 0.0096672817SEH1L NM_001013437 Hs.301048 18 p11.21 12937.982 12937.982 0.0096984554ARIH1 NM_005744 Hs.268787 15 q24.1 70553.72 70553.72 0.0098024292EXOC2 NM_018303 Hs.484412 6 p25.3 430.138 430.138 0.0099243432PTPRH NM_002842 Hs.179770 19 q13.42 60384.427 60384.427 0.0099414781MON1B NM_014940 Hs.513743 16 q23.1 75782.336 75782.336 0.0099853628

HDGFRP3 NM_016073 Hs.513954 15 q25.2 81597.819 81597.819 0.0099975493PLAA NM_001031689 Hs.27182 9 p21.2 26894.518 26895.34 0.0100403640

COPS7B NM_022730 Hs.335061 2 q37.1 232359.405 232359.405 0.0100553631UBE2G2 NM_003343 Hs.529420 21 q22.3 45013.383 45013.383 0.0100648291MAN2B2 NM_015274 Hs.188464 4 p16.1 6627.802 6627.802 0.0101558059C9orf25 NM_147202 Hs.493771 9 p13.3 34388.182 34388.182 0.0102103801HERC1 NM_003922 Hs.210385 15 q22.31 61687.87 61687.87 0.0102839046ZNF232 NM_014519 Hs.279914 17 p13.2 4949.756 4949.756 0.0103707009NMT2 NM_004808 Hs.60339 10 p13 15187.776 15187.776 0.0104129732

ZNF398 NM_020781 Hs.490510 7 q36.1 148454.44 148475.75 0.0104373647RGS12 NM_002926 Hs.527061 4 p16.2 3285.671 3341.521 0.0105546502ICAM5 NM_003259 Hs.465862 19 p13.2 10261.654 10261.654 0.0105753419

EXOSC3 NM_001002269 Hs.591076 9 p13.2 37770.307 37770.307 0.0105798720PISD NM_014338 Hs.420559 22 q12.2 30344.48 30344.48 0.0106028393

SETDB2 NM_031915 Hs.631789 13 q14.3 48916.51 48916.51 0.0107416194SEC24B XM_001130118 Hs.292472 4 q25 110574.419 110574.419 0.0107723355LMCD1 NM_014583 Hs.475353 3 p26.1 8518.51 8518.51 0.0107754670UEVLD NM_001040697 Hs.407991 11 p15.1 18509.82 18509.82 0.0108250890CUL4A NM_001008895 Hs.339735 13 q34 112911.086 112911.931 0.0108576727ZMAT5 NM_001003692 Hs.652407 22 q12.2 28456.945 28456.945 0.0108626916

C18orf21 NM_031446 Hs.37883 18 q12.2 31806.585 31806.585 0.0108855896DNAJA1 NM_001539 Hs.445203 9 p13.3 33015.208 33015.208 0.0109020760EXOC3 NM_007277 Hs.646923 5 p15.33 496.333 496.333 0.0109196149RBBP9 NM_006606 Hs.69330 20 p11.23 18415.189 18415.189 0.0110449381

HDHD1A NM_012080 Hs.185910 23 p22.31 6976.96 6976.96 0.0110883790VPS39 NM_015289 Hs.88025 15 q15.1 40238.191 40238.191 0.0111027076MTIF3 NM_152912 Hs.534582 13 q12.2 26907.782 26907.782 0.0111489588PDCD4 NM_014456 Hs.232543 10 q25.2 112621.585 112621.585 0.0111942574DNAJB6 NM_005494 Hs.490745 7 q36.3 156822.47 156822.471 0.0112213729VPS4B NM_004869 Hs.126550 18 q21.33 59207.406 59207.406 0.0112793341TRIP12 NM_004238 Hs.591633 2 q36.3 230340.173 230340.173 0.0112835540TTC9C NM_173810 Hs.31704 11 q12.3 62252.527 62252.527 0.0112946956POLS NM_006999 Hs.481542 5 p15.31 6767.717 6767.717 0.0113389466RPL13 NM_000977 Hs.410817 16 q24.3 88154.59 88154.631 0.0114292606

C6orf166 NM_018064 Hs.485915 6 q15 88441.693 88441.693 0.0114499544PFKP NM_002627 Hs.26010 10 p15.2 3099.751 3099.751 0.0114695579RBP7 NM_052960 Hs.422688 1 p36.22 9979.86 9979.86 0.0115021855

SRD5A1 NM_001047 Hs.552 5 p15.31 6686.499 6686.499 0.0115752452SRI NM_003130 Hs.489040 7 q21.12 87672.367 87672.367 0.0115777813

CTPS2 NM_019857 Hs.227049 23 p22.2 16516.044 16516.044 0.0116027886DNHD1 NM_144666 Hs.424183 11 p15.4 6543.91 6543.91 0.0116611959TIMM23 XM_001133798 Hs.524308 10 q11.23 51262.095 51262.095 0.0116736349

KIAA0738 XM_936710 Hs.406492 7 q35 143180.981 143180.981 0.0118015243CP110 NM_014711 Hs.279912 16 p12.3 19442.708 19442.708 0.0119142309ARL3 NM_004311 Hs.182215 10 q24.32 104423.478 104423.478 0.0119739697TPM2 NM_003289 Hs.300772 9 p13.3 35671.989 35672.923 0.0119884660WDR1 NM_005112 Hs.128548 4 p16.1 9685.06 9685.06 0.0120031332

TEF NM_003216 Hs.181159 22 q13.2 40107.908 40107.908 0.0120834066PURB NM_033224 Hs.349150 7 p13 44882.418 44882.418 0.0120888475

TRAPPC4 NM_016146 Hs.524078 11 q23.3 118394.45 118394.45 0.0121705338MTHFD1L NM_015440 Hs.591343 6 q25.1 151228.383 151228.383 0.0121979760C1orf149 NM_022756 Hs.17118 1 p34.3 37730.762 37730.762 0.0122551445ALDH4A1 NM_003748 Hs.77448 1 p36.13 19070.512 19070.512 0.0123132923OTUD4 NM_017493 Hs.270851 4 q31.22 146274.252 146299.739 0.0123245008

NARG1L NM_018527 Hs.512914 13 q14.11 40783.417 40783.417 0.0124805334CYB5A NM_001914 Hs.465413 18 q22.3 70071.507 70071.507 0.0126245856

RHBDD1 NM_032276 Hs.471514 2 q36.3 227409.016 227409.016 0.0126537284ANKRD16 NM_001009941 Hs.289828 10 p15.1 5943.696 5960.058 0.0126640064

TM2D3 NM_025141 Hs.288912 15 q26.3 99999.576 99999.576 0.0126696703FBXO18 NM_032807 Hs.498543 10 p15.1 5972.219 5976.354 0.0126710460TMEM11 NM_003876 Hs.605327 17 p11.2 21041.854 21041.854 0.0126972497DEAF1 XM_001129197 Hs.243994 11 p15.5 634.224 634.224 0.0127252637RSF1 NM_016578 Hs.420229 11 q14.1 77054.922 77054.922 0.0127314480

CNDP2 NM_018235 Hs.149185 18 q22.3 70314.576 70314.576 0.0127736813RDX NM_002906 Hs.263671 11 q22.3 109605.375 109605.375 0.0128565429

DDX17 NM_006386 Hs.528305 22 q13.1 37209.39 37209.39 0.0128861184PRDM1 NM_001198 Hs.436023 6 q21 106640.887 106653.507 0.0129775079CTGF NM_001901 Hs.591346 6 q23.2 132311.011 132311.011 0.0129806118

C15orf24 NM_020154 Hs.160565 15 q14 32163.516 32163.516 0.0129864163FDXR NM_004110 Hs.69745 17 q25.1 70370.214 70370.214 0.0130630854

EIF3S10 NM_003750 Hs.523299 10 q26.11 120784.531 120784.531 0.0130827512GFM2 NM_032380 Hs.277154 5 q13.3 74052.787 74068.249 0.0132188442

EWSR1 NM_005243 Hs.374477 22 q12.2 27994.016 27994.016 0.0132884465C1orf63 NM_020317 Hs.259412 1 p36.11 25441.327 25441.327 0.0134052806PKNOX1 NM_197976 Hs.431043 21 q22.3 43267.711 43267.711 0.0134443315TBC1D20 NM_144628 Hs.590876 20 p13 364.125 364.125 0.0135821299

CD81 NM_004356 Hs.54457 11 p15.5 2355.122 2355.122 0.0136556938RAPH1 NM_025252 Hs.471162 2 q33.2 204006.785 204017.6 0.0137103701

HNRPDL NM_005463 Hs.527105 4 q21.22 83563.37 83563.37 0.0139275454HDHD3 NM_031219 Hs.7739 9 q32 115175.518 115175.518 0.0140057979

LOC375133 XM_942088 Hs.448225 22 q11.21 18763.665 20157.439 0.0140781573SPG7 NM_003119 Hs.185597 16 q24.3 88102.305 88102.305 0.0140783332

C1orf86 NM_182533 Hs.107101 1 p36.33 2110.847 2110.847 0.0141251357TYRO3 NM_006293 Hs.381282 15 q15.1 39638.523 39638.523 0.0141349476

RG9MTD3 NM_144964 Hs.556027 9 p13.2 37743.801 37743.801 0.0141350669FBXL16 NM_153350 Hs.513244 16 p13.3 682.506 682.506 0.0143138118CFDP1 NM_006324 Hs.461361 16 q23.1 73885.109 73885.109 0.0143446858

ZMYND11 NM_006624 Hs.292265 10 p15.3 170.642 170.642 0.0144589396CCNC NM_001013399 Hs.430646 6 q16.3 100096.984 100096.984 0.0145111339SYT15 XM_001134331 Hs.132762 10 q11.22 46375.452 46378.533 0.0145333048

TK1 NM_003258 Hs.515122 17 q25.3 73681.775 73681.775 0.0145337042TRAPPC1 NM_021210 Hs.24379 17 p13.1 7774.391 7774.391 0.0146944526

BCOR NM_017745 Hs.86984 23 p11.4 39795.56 39816.123 0.0147008886KIAA1797 NM_017794 Hs.408652 9 p21.3 20648.308 20648.308 0.0147842565

NAT11 NM_024771 Hs.523753 11 q13.1 63463.043 63463.043 0.0148485186TTK NM_003318 Hs.169840 6 q14.1 80771.077 80771.077 0.0148501100

RSU1 NM_012425 Hs.524161 10 p13 16672.624 16672.624 0.0149066597CCDC5 XM_001129608 Hs.436617 18 q21.1 41938.322 41938.322 0.0149479152TBPL1 NM_004865 Hs.486507 6 q23.2 134315.993 134315.993 0.0150201926COX10 NM_001303 Hs.462278 17 p12 13913.443 13913.443 0.0151067575RRBP1 NM_001042576 Hs.472213 20 p12.1 17542.322 17542.322 0.0151222628

TBC1D10B NM_015527 Hs.632182 16 p11.2 30275.923 30275.923 0.0152401358CBL NM_005188 Hs.504096 11 q23.3 118582.199 118582.199 0.0153448432

ANAPC10 NM_014885 Hs.480876 4 q31.22 146135.77 146135.77 0.0154227499IQSEC2 NM_015075 Hs.496138 23 p11.22 53278.783 53278.783 0.0154241965ATP9B NM_198531 Hs.465475 18 q23 74930.384 74930.384 0.0154865438

YME1L1 NM_014263 Hs.74647 10 p12.1 27439.39 27440.671 0.0154954230PAXIP1 NM_007349 Hs.443881 7 q36.2 154366.333 154366.333 0.0155233316ZNF212 NM_012256 Hs.490510 7 q36.1 148567.706 148567.706 0.0155772280ADCK4 NM_024876 Hs.130712 19 q13.2 45889.273 45889.273 0.0155837283AKAP7 NM_004842 Hs.486483 6 q23.2 131508.153 131613.196 0.0155933614

AGPAT7 NM_153613 Hs.352614 15 q14 32438.381 32438.381 0.0156037123FBXO5 NM_012177 Hs.520506 6 q25.2 153333.352 153333.352 0.0156134086

PPP1R14B NM_138689 Hs.523760 11 q13.1 63768.528 63768.528 0.0156858390DDX17 NM_006386 Hs.528305 22 q13.1 37209.39 37209.39 0.0156877416

MGC2408 NM_032331 Hs.146161 3 q27.1 185450.142 185450.142 0.0157597179MIB1 NM_020774 Hs.140903 18 q11.2 17575.542 17575.542 0.0158517056BNC2 NM_017637 Hs.435309 9 p22.3 16399.501 16399.501 0.0158525968

MAPKAP1 NM_001006617 Hs.495138 9 q33.3 127239.494 127323.571 0.0158829418PALB2 NM_024675 Hs.444664 16 p12.1 23521.983 23521.983 0.0159117668LAMC3 NM_006059 Hs.201805 9 q34.13 132874.324 132874.324 0.0159291627GRIK5 NM_002088 Hs.367799 19 q13.2 47194.312 47194.312 0.0159708609

FAM113A NM_022760 Hs.29341 20 p13 2763.97 2763.97 0.0160705451DGCR8 NM_022720 Hs.643452 22 q11.21 18447.833 18447.833 0.0161133268

PISD NM_014338 Hs.420559 22 q12.2 30344.48 30344.48 0.0161419947ENPP1 NM_006208 Hs.527295 6 q23.2 132170.852 132170.852 0.0163775563PNPLA6 NM_006702 Hs.631863 19 p13.2 7505.042 7505.042 0.0164380834ECHDC1 NM_018479 Hs.486410 6 q22.33 127651.551 127651.551 0.0164648967WDR76 NM_024908 Hs.250154 15 q15.3 41906.499 41906.499 0.0165533478

TOPORS NM_005802 Hs.493668 9 p21.1 32530.542 32530.542 0.0166248414RAI16 NM_022749 Hs.491223 8 p21.3 22002.659 22002.659 0.0166993829DSC2 NM_004949 Hs.95612 18 q12.1 26900.004 26900.004 0.0167048541

PRPSAP2 NM_002767 Hs.632236 17 p11.2 18702.216 18702.216 0.0167148492CPEB2 XM_001130717 Hs.374216 4 p15.33 14614.619 14614.619 0.0167765269

SLC26A11 XM_001132495 Hs.4866 17 q25.3 75808.831 75808.831 0.0169596925MTMR3 NM_021090 Hs.474536 22 q12.2 28609.198 28609.198 0.0169734784Sep-02 NM_001008491 Hs.335057 2 q37.3 241903.395 241903.953 0.0171633109

NSFL1C NM_016143 Hs.12865 20 p13 1370.812 1370.812 0.0171839314B3GAT3 NM_012200 Hs.212957 11 q12.3 62139.344 62139.344 0.0172028714RANBP9 NM_005493 NA 6 p23 13729.709 13729.709 0.0172260518SSBP3 XM_001130465 Hs.568651 1 p32.3 54464.783 54464.783 0.0172467413MED9 NM_018019 Hs.244595 17 p11.2 17321.024 17321.024 0.0173064127

DTWD1 NM_020234 Hs.127432 15 q21.2 47700.587 47700.587 0.0173817493CCRN4L NM_012118 Hs.548091 4 q31.1 140156.392 140156.392 0.0174545619HTRA1 NM_002775 Hs.501280 10 q26.13 124211.046 124211.046 0.0175196126SNX14 NM_020468 Hs.485871 6 q14.3 86271.935 86271.935 0.0175944046

ELOVL4 NM_022726 Hs.101915 6 q14.1 80681.254 80681.254 0.0176201690TSHZ1 NM_005786 Hs.284217 18 q22.3 71051.718 71051.718 0.0176231993GPR63 NM_030784 Hs.632612 6 q16.1 97352.644 97352.644 0.0178184448UBL7 NM_032907 Hs.334713 15 q24.1 72525.37 72525.37 0.0179629179

PQLC1 NM_025078 Hs.288284 18 q23 75763.475 75763.475 0.0179836221EPN1 NM_013333 Hs.279953 19 q13.42 60878.403 60878.403 0.0180041949

ZMYM3 NM_005096 Hs.522684 23 q13.1 70376.198 70376.198 0.0180514126TSTA3 NM_003313 Hs.404119 8 q24.3 144765.932 144765.932 0.0180666933MTCH1 NM_014341 Hs.485262 6 p21.2 37043.895 37043.895 0.0180747153DDX17 NM_006386 Hs.528305 22 q13.1 37209.39 37209.39 0.0180872813IFIT2 NM_001547 Hs.437609 10 q23.31 91051.782 91051.782 0.0180976990

OGFOD1 NM_018233 Hs.231883 16 q13 55042.924 55042.924 0.0181532504C6orf136 NM_145029 Hs.591787 6 p25.3-p21.33 1862.061 30723.186 0.0181705418GUCY1A3 NM_000856 Hs.24258 4 q32.1 156807.327 156807.327 0.0181845527SLC4A7 NM_003615 Hs.250072 3 p24.1 27389.217 27389.217 0.0182357366NUP54 NM_017426 Hs.430435 4 q21.1 77254.841 77254.841 0.0182429178

CEP192 NM_018069 Hs.100914 18 p11.21 12998.498 12998.498 0.0182668705CDK8 NM_001260 Hs.382306 13 q12.13 25726.755 25726.755 0.0182744567APLP2 NM_001642 Hs.370247 11 q24.3 129445.01 129445.01 0.0183463600

KLHL26 NM_018316 Hs.250632 19 p13.11 18608.837 18608.837 0.0184132523C4orf23 NM_152544 Hs.566191 4 p16.1 8507.042 8507.042 0.0184539125

RP5-1022P6.2 NM_019593 Hs.636359 20 p12.3 5475.288 5475.288 0.0184744261CALM3 NM_005184 Hs.515487 19 q13.32 51796.351 51796.351 0.0184940651

ZC3HC1 NM_016478 Hs.194157 7 q32.2 129445.361 129445.361 0.0185098781SR-A1 NM_021228 Hs.103521 19 q13.33 54840.088 54840.088 0.0187722869GAB1 NM_002039 Hs.80720 4 q31.21 144477.499 144477.499 0.0189107159

NIPSNAP3A NM_015469 Hs.591897 9 q31.1 106549.789 106549.789 0.0189255801FCHO1 NM_015122 Hs.96485 19 p13.11 17723.335 17723.335 0.0189711118

OSBPL5 NM_020896 Hs.436166 11 p15.4 3064.921 3064.921 0.0190136372Sep-15 NM_004261 Hs.362728 1 p22.3 87100.717 87100.717 0.0190768993

JMJD1C NM_004241 Hs.413416 10 q21.2 64596.995 64596.995 0.0191182752CASP3 NM_004346 Hs.141125 4 q35.1 185785.845 185785.845 0.0191643164LCOR NM_032440 Hs.500695 10 q24.1 98582.726 98582.726 0.0191653378CBFB NM_001755 Hs.460988 16 q22.1 65620.55 65620.55 0.0192008955HMBS NM_000190 Hs.82609 11 q23.3 118460.796 118463.906 0.0192357126LATS2 NM_014572 Hs.78960 13 q12.11 20446.578 20446.578 0.0193429992

DPAGT1 NM_001382 Hs.524081 11 q23.3 118472.423 118472.423 0.0193445613HMGN2 NM_005517 Hs.181163 1 p36.11 26671.5 26671.5 0.0193701794VNN1 NM_004666 Hs.12114 6 q23.2 133044.424 133044.424 0.0194252867

CHSY1 NM_014918 Hs.110488 15 q26.3 99533.455 99533.455 0.0194449456SHMT1 NM_004169 Hs.513987 17 p11.2 18171.919 18171.919 0.0196176729RNF185 NM_152267 Hs.517553 22 q12.2 29886.178 29886.178 0.0198083055

CFD NM_001928 Hs.155597 19 p13.3 810.664 810.664 0.0198147455DKFZP434B0335 NM_015395 Hs.632303 7 q21.3 97683.995 97683.995 0.0198377948

C18orf37 NM_194281 Hs.464903 18 q12.2 31302.295 31302.295 0.0199131860C16orf69 NM_153261 Hs.59134 16 q12.1 48616.689 48616.689 0.0200118393VEGFA NM_001025366 Hs.73793 6 p21.1 43845.93 43845.93 0.0201361778CLIP2 NM_003388 Hs.647018 7 q11.23 73341.74 73341.74 0.0201562130STIP1 NM_006819 Hs.337295 11 q13.1 63710.162 63710.162 0.0201638054TDRD3 NM_030794 Hs.525061 13 q21.2 59869.122 59869.122 0.0201744550

C16orf14 NM_138418 Hs.417710 16 p13.3 631.849 631.849 0.0202379777USP47 NM_017944 Hs.577256 11 p15.3 11819.545 11819.545 0.0202418068MYO9A NM_006901 Hs.546268 15 q23 69905.418 69905.418 0.0204768414TSPAN3 NM_005724 Hs.5062 15 q24.3 75125.386 75125.386 0.0205016453SEMA4G NM_017893 Hs.591923 10 q24.31 102722.275 102722.275 0.0206356501FAM96A NM_001014812 Hs.439548 15 q22.31 62151.815 62151.815 0.0206878631

ZFAND2B NM_138802 Hs.534540 2 q35 219779.781 219779.781 0.0208657747CTTN NM_005231 Hs.632133 11 q13.3 69922.291 69922.291 0.0209031778

PTGER4 NM_000958 Hs.199248 5 p13.1 40715.788 40715.788 0.0209140347TAF6L NM_006473 Hs.131846 11 q12.3 62295.45 62295.45 0.0209179623TGDS NM_014305 Hs.12393 13 q32.1 94024.309 94024.309 0.0209349741

CARD10 NM_014550 Hs.57973 22 q13.1 36216.346 36216.346 0.0209982645BCR NM_004327 Hs.517461 22 q11.23 21852.551 21852.551 0.0210225497

TBC1D2B NM_015079 Hs.567426 15 q24.3 76074.382 76074.382 0.0211113581PES1 NM_014303 Hs.517543 22 q12.2 29302.612 29302.612 0.0211198632

ISYNA1 NM_016368 Hs.405873 19 p13.11 18406.624 18406.624 0.0213323686ABCC4 NM_005845 Hs.508423 13 q32.1 94470.09 94470.09 0.0213664923

MARVELD1 NM_031484 Hs.209614 10 q24.2 99463.47 99463.47 0.0214415679LCAT NM_000229 Hs.387239 16 q22.1 66531.287 66531.287 0.0215155891

ATP6V1G1 NM_004888 Hs.388654 9 q32 116389.814 116389.814 0.0215449014GALNT11 NM_022087 Hs.647109 7 q36.1 151353.796 151353.796 0.0217003732ALKBH4 NM_017621 Hs.530089 7 q22.1 101883.701 101883.701 0.0217141459UNC84A NM_025154 Hs.438072 7 p22.3 822.777 822.777 0.0217793756PPRC1 NM_015062 Hs.533551 10 q24.32 103882.776 103882.776 0.0217882162IFI30 NM_006332 Hs.14623 19 p13.11 18145.578 18145.578 0.0218067805

MCOLN2 NM_153259 Hs.591446 1 p22.3 85163.854 85163.854 0.0218235064PCID1 NM_006360 Hs.502244 11 p13 32561.966 32561.966 0.0218415689LCMT1 NM_001032391 Hs.337730 16 p12.1 25030.547 25030.547 0.0218659455MLLT10 NM_001009569 Hs.30385 10 p12.31 21863.107 21863.579 0.0219940671POLR2B NM_000938 Hs.602757 4 q12 57539.865 57539.865 0.0221066703

INTS4 NM_033547 Hs.533723 11 q14.1 77267.415 77267.415 0.0221124405MICA XM_001124652 Hs.77961 6 p25.2 2618.763 2618.763 0.0221337795

MRPL36 NM_032479 Hs.32196 5 p15.33 1851.499 1851.499 0.0222050758GKAP1 NM_025211 Hs.522255 9 q21.32 85544.156 85544.156 0.0222168462ZNF488 NM_153034 Hs.27788 10 q11.22 47975.094 47975.094 0.0223202811ALKBH6 NM_032878 Hs.71941 19 q13.12 41191.861 41191.862 0.0223825747IQGAP1 NM_003870 Hs.430551 15 q26.1 88732.476 88732.476 0.0224117383GPC2 NM_152742 Hs.211701 7 q22.1 99605.165 99605.165 0.0224213587

GRIN2C NM_000835 Hs.436980 17 q25.1 70349.762 70349.762 0.0224603535LARP2 NM_018078 Hs.480712 4 q28.2 129201.952 129201.952 0.0225946392

GABRB3 NM_000814 Hs.302352 15 q12 24339.788 24339.788 0.0226210501bA16L21.2.1 NM_001015882 Hs.534196 9 q31.3 113433.452 113433.452 0.0227320633

MBTPS1 NM_003791 Hs.75890 16 q23.3 82644.871 82644.871 0.0227323392PRDX5 NM_012094 Hs.502823 11 q13.1 63842.144 63842.144 0.0227739175

CABLES1 NM_138375 Hs.11108 18 q11.2 18989.786 18989.786 0.0228645136LARP5 NM_015155 Hs.631814 10 p15.3 845.483 845.483 0.0228706767TTRAP NM_016614 Hs.403010 6 p22.2 24758.184 24758.184 0.0229130462C9orf21 NM_153698 Hs.44640 9 q22.33 98443.354 98443.354 0.0229896910

MAPKBP1 NM_014994 Hs.513661 15 q15.1 39854.003 39854.003 0.0231986607KIAA1794 NM_018193 Hs.513126 15 q26.1 87588.197 87588.197 0.0232196099

NAT10 NM_024662 Hs.577281 11 p13 34083.724 34083.724 0.0232663418DHPS NM_001930 Hs.79064 19 p13.13 12647.533 12647.533 0.0232826045RB1 NM_000321 Hs.408528 13 q14.2 47775.883 47775.883 0.0233079877

WWC2 NM_024949 Hs.333179 4 q35.1 184351.761 184351.761 0.0233975425KPNA3 NM_002267 Hs.527919 13 q14.3 49171.462 49171.462 0.0234084392PLAC8 NM_016619 Hs.546392 4 q21.22 84230.866 84230.866 0.0234102805G3BP2 NM_012297 Hs.303676 4 q21.1 76786.99 76786.99 0.0234576903

ZCCHC6 NM_024617 Hs.136398 9 q21.33 88092.469 88092.469 0.0237102680LOC375133 XM_942088 Hs.448225 22 q11.21 18763.665 20157.439 0.0237239011

NMNAT1 NM_022787 Hs.633762 1 p36.22 9926.072 9926.072 0.0238849603MGC16824 NM_020314 Hs.300404 16 p12.3 19474.54 19474.54 0.0239277014

PDE6D NM_002601 Hs.516808 2 q37.1 232305.39 232305.39 0.0241471721TRIOBP NM_001039141 Hs.533030 22 q13.1 36423.573 36472.186 0.0241635319ANKZF1 NM_001042410 Hs.437647 2 q35 219802.722 219802.853 0.0241765875MKKS NM_018848 Hs.472119 20 p12.2 10333.832 10333.832 0.0241778871

AURKAIP1 NM_017900 Hs.515704 1 p36.33 384.701 1298.972 0.0241875628TTC33 NM_012382 Hs.348915 5 p13.1 40747.435 40747.435 0.0243319542NOLC1 NM_004741 Hs.523238 10 q24.32 103902.106 103902.106 0.0244311188

CTDSP1 NM_021198 Hs.652343 2 q35 218972.721 218973.057 0.0244416964TNFAIP8L1 NM_152362 Hs.465643 19 p13.3 4590.529 4590.529 0.0244486090

SHPRH NM_001042683 Hs.124537 6 q24.3 146247.636 146247.636 0.0244570093ZBTB17 NM_003443 Hs.433764 1 p36.13 16140.952 16140.952 0.0245376435

ANKRD12 NM_015208 Hs.464585 18 p11.22 9126.8 9126.8 0.0245412804AGA NM_000027 Hs.207776 4 q34.3 178588.917 178588.917 0.0245643231

GALNAC4S-6ST NM_015892 Hs.287537 10 q26.13 125757.175 125757.175 0.0245897985PREB NM_013388 Hs.279784 2 p23.3 27207.13 27207.13 0.0246430503

GPR180 NM_180989 Hs.439363 13 q32.1 94052.104 94052.104 0.0247459780DAGLBETA NM_139179 Hs.487498 7 p22.1 6415.285 6415.285 0.0248931649

VAV1 NM_005428 Hs.116237 19 p13.3 6723.721 6723.721 0.0248970301UTP14C NM_021645 Hs.512963 13 q14.3 51496.827 51496.827 0.0249546331C4orf8 NM_003704 Hs.652364 4 p16.3 2596.956 2596.956 0.0250041321

MOSPD3 NM_001040097 Hs.521086 7 q22.1 100047.66 100048.049 0.0250157625ADAMTS8 NM_007037 Hs.271605 11 q24.3 129780.029 129780.029 0.0250892251

FOXQ1 NM_033260 Hs.591352 6 p25.3 1257.674 1257.674 0.0251177668ATP5C1 NM_001001973 Hs.271135 10 p14 7870.098 7870.098 0.0251312625

KIAA1967 NM_021174 Hs.433722 8 p21.3 22518.201 22518.495 0.0251830360HPS1 NM_000195 Hs.404568 10 q24.2 100165.945 100178.894 0.0253676486

CD320 NM_016579 Hs.558499 19 p13.2 8273.01 8273.01 0.0254755203UBE1C NM_003968 Hs.154320 3 p14.1 69186.571 69186.571 0.0255733732

TST NM_003312 Hs.474783 22 q12.3 35736.852 35736.852 0.0255949199TSC1 NM_000368 Hs.370854 9 q34.13 134756.557 134776.207 0.0256079939

ST3GAL4 NM_006278 Hs.591947 11 q24.2 125731.305 125731.305 0.0257825579ADC NM_052998 Hs.101807 1 p35.1 33319.3 33319.3 0.0258961590

PSMA1 NM_002786 Hs.102798 11 p15.2 14482.998 14482.998 0.0259140101FLJ20152 NM_001034850 Hs.481704 5 p15.1 16526.147 16526.147 0.0260580336SCC-112 NM_015200 Hs.331431 4 p14 39500.878 39500.878 0.0260871475WDR46 NM_005452 Hs.520063 6 p25.1-p21.32 4433.071 33354.863 0.0262429003CYGB NM_134268 Hs.95120 17 q25.1 72035.034 72035.034 0.0262850477

CDC14B NM_001077181 Hs.40582 9 q22.33 98302.217 98302.217 0.0264632021RPL13 NM_000977 Hs.410817 16 q24.3 88154.59 88154.631 0.0264692642EDEM1 NM_014674 Hs.224616 3 p26.2 5204.432 5204.432 0.0265586007C13orf7 NM_024546 Hs.567576 13 q31.1 78086.421 78086.421 0.0266324209CDC123 NM_006023 Hs.412842 10 p14 12277.97 12277.97 0.0266547828WBP4 NM_007187 Hs.411300 13 q14.11 40533.696 40533.696 0.0266850351SMAD4 NM_005359 Hs.75862 18 q21.2 46810.61 46810.61 0.0267330728KBTBD7 NM_032138 Hs.63841 13 q14.11 40663.71 40663.71 0.0267522756

SPP1 NM_000582 Hs.313 4 q22.1 89115.825 89115.825 0.0268830181Sep-11 NM_018243 Hs.128199 4 q21.1 78089.918 78089.918 0.0268924313

BCKDHA NM_000709 Hs.433307 19 q13.2 46595.543 46595.543 0.0269355874THNSL1 NM_024838 Hs.645274 10 p12.1 25345.592 25345.592 0.0269472793FBXO7 NM_001033024 Hs.5912 22 q12.3 31200.706 31201.223 0.0269510374PFTK1 NM_012395 Hs.430742 7 q21.13 90176.647 90176.647 0.0270826280ILKAP NM_030768 Hs.92033 2 q37.3 238743.782 238743.782 0.0271090104

ZRANB1 NM_017580 Hs.595158 10 q26.13 126620.681 126620.681 0.0271275492NOMO2 XM_001126428 Hs.460141 16 p12.3 18418.683 18418.683 0.0273220782

SLC25A26 NM_001009937 Hs.379386 3 p14.1 66376.316 66376.316 0.0273856082PDSS2 NM_020381 Hs.486095 6 q21 107580.455 107580.455 0.0274915024

KAZALD1 NM_030929 Hs.534859 10 q24.31 102811.587 102811.587 0.0275903172ZFX NM_003410 Hs.336681 23 p22.11 24079.728 24079.728 0.0276495303

MAPK1 NM_002745 Hs.431850 22 q11.21 20443.948 20453.319 0.0277438642GUF1 NM_021927 Hs.546419 4 p13 44375.239 44375.239 0.0278528061

SFRS14 NM_001017392 Hs.515271 19 p13.11 18962.702 18964.176 0.0278989204TARSL2 NM_152334 Hs.6918 15 q26.3 100011.478 100011.478 0.0279327929DCPS NM_014026 Hs.504249 11 q24.2 125678.856 125678.856 0.0279396094AP3S2 NM_005829 Hs.632161 15 q26.1 88177.792 88177.792 0.0280180953SPON1 NM_006108 Hs.643864 11 p15.2 13940.489 13940.489 0.0280941506HEATR3 NM_182922 Hs.647381 16 q12.1 48657.381 48657.381 0.0281771539FAM21C NM_015262 Hs.365286 10 q11.21 45542.672 45542.672 0.0282110694MRPL18 NM_014161 Hs.416998 6 q25.3 160131.487 160131.487 0.0283602104SFXN2 NM_178858 Hs.44070 10 q24.32 104464.287 104464.287 0.0283755331

C11orf46 NM_152316 Hs.502208 11 p14.1 30301.224 30301.224 0.0284281438CRYAB NM_001885 Hs.408767 11 q23.1 111284.559 111284.559 0.0285311475ZBTB3 NM_024784 Hs.147554 11 q12.3 62275.012 62275.012 0.0285892141

ADARB1 NM_001033049 Hs.474018 21 q22.3 45318.942 45318.942 0.0286254127SCYE1 NM_004757 Hs.591680 4 q24 107457.123 107457.123 0.0286696843WDR79 NM_018081 Hs.437460 17 p13.1 7532.519 7532.519 0.0287118919MORG1 NM_032332 Hs.334626 19 p13.13 12641.583 12641.583 0.0287376277

DEXI NM_014015 Hs.592051 16 p13.13 10930.249 10930.249 0.0287547307LAMA3 NM_000227 Hs.436367 18 q11.2 19523.559 19707.003 0.0288156786CTSD NM_001909 Hs.121575 11 p15.5 1730.56 1730.56 0.0288630364SF1 NM_004630 Hs.502829 11 q13.1 64288.653 64300.093 0.0288813505LTV1 NM_032860 Hs.185675 6 q24.2 144206.2 144206.2 0.0288874310

EIF3S4 NM_003755 Hs.529059 19 p13.2 10086.69 10086.69 0.0288936710OXCT1 NM_000436 Hs.278277 5 p13.1 41765.924 41765.924 0.0289074687CKAP2 NM_018204 Hs.444028 13 q14.3 51927.596 51927.596 0.0290299571PLS3 NM_005032 Hs.496622 23 q23 114701.764 114701.764 0.0290954094

FLJ10154 NM_018011 Hs.508644 13 q33.3 105993.676 105993.676 0.0290983838STARD5 NM_030574 Hs.513075 15 q25.1 79392.068 79392.068 0.0291505072GRHL3 NM_021180 Hs.369825 1 p36.11 24518.467 24522.116 0.0291686447

ZDHHC18 NM_032283 Hs.523710 1 p36.11 27025.787 27025.787 0.0291890712UFM1 NM_016617 Hs.643655 13 q13.3 37822.017 37822.017 0.0292059232

FAM118B NM_024556 Hs.276315 11 q24.2 125586.828 125586.828 0.0292685521DUT NM_001025248 Hs.527980 15 q21.1 46410.912 46411.656 0.0293738702

IER3IP1 NM_016097 NA 18 q21.1 42935.412 42935.412 0.0294167440KIAA1840 NM_025137 Hs.584976 15 q15.3 42642.186 42642.186 0.0296232406

HERC2 NM_004667 Hs.434890 15 q13.1 26029.784 26029.784 0.0297973927DNM2 NM_001005360 Hs.211463 19 p13.2 10689.754 10689.754 0.0298582450ZUBR1 NM_020765 Hs.148078 1 p36.13 19273.588 19273.588 0.0299193272LARGE NM_004737 Hs.474667 22 q12.3 31999.062 31999.062 0.0299283799RPS23 NM_001025 Hs.527193 5 q14.2 81604.896 81604.896 0.0299377239WNT7A NM_004625 Hs.72290 3 p25.1 13835.082 13835.082 0.0299606880PPP4R1 NM_001042388 Hs.464595 18 p11.22 9536.791 9536.791 0.0299744548PARD3 NM_019619 Hs.131489 10 p11.22 34440.103 34440.103 0.0300596046

MAGEE1 NM_020932 Hs.8453 23 q13.3 75564.52 75564.52 0.0300602906INTS5 NM_030628 Hs.458390 11 q12.3 62170.897 62170.897 0.0303799378

KIAA1754 NM_033397 Hs.523252 10 q25.1 106061.89 106061.89 0.0305485914CCNDBP1 NM_012142 Hs.36794 15 q15.2 41264.831 41265.441 0.0306112939

MYST1 NM_032188 Hs.533803 16 p11.2 31036.487 31036.487 0.0307791248PPP2R5D NM_006245 Hs.533308 6 p21.1 43060.307 43060.307 0.0308757403

PRDX5 NM_012094 Hs.502823 11 q13.1 63842.144 63842.144 0.0308760492IFIT3 NM_001031683 Hs.47338 10 q23.31 91077.732 91082.282 0.0310032674

C1orf52 NM_198077 Hs.26226 1 p22.3 85490.243 85490.243 0.0310417645LOC400924 NM_001013676 Hs.534783 22 q12.2 28754.222 28754.222 0.0310611840

BTC NM_001729 Hs.591704 4 q13.3 75890.471 75890.471 0.0311590705EEF1B2 NM_001037663 Hs.421608 2 q33.3 206732.562 206732.562 0.0311793342TRPT1 NM_001033678 Hs.326586 11 q13.1 63747.847 63747.896 0.0313491097BMP1 NM_001199 Hs.1274 8 p21.3 22078.834 22078.863 0.0315418347

HS3ST3A1 NM_006042 Hs.462270 17 p12 13339.73 13339.73 0.0315583860ZNF79 NM_007135 Hs.522399 9 q33.3 129226.481 129226.481 0.0316683266

PLEKHJ1 NM_018049 Hs.501353 19 p13.3 2184.154 2184.154 0.0317360442AP1M1 NM_032493 Hs.71040 19 p13.11 16169.73 16169.73 0.0317654326DHDDS NM_024887 Hs.369385 1 p36.11 26631.388 26631.388 0.0320200549SNRPB NM_003091 Hs.83753 20 p13 2390.28 2390.28 0.0320882389ASF1A NM_014034 Hs.292316 6 q22.31 119263.627 119263.627 0.0321202431

SLC6A9 NM_001024845 Hs.442590 1 p34.1 44234.742 44234.742 0.0322124938DBP NM_001352 Hs.414480 19 q13.33 53825.758 53825.758 0.0322622223

CSTF3 NM_001033505 Hs.44402 11 p13 33062.71 33119.553 0.0322897671PDCD6 NM_013232 Hs.50823 5 p15.33 324.735 324.735 0.0323189374PPM1G NM_002707 Hs.17883 2 p23.3 27457.565 27457.565 0.0323432596OXTR NM_000916 Hs.2820 3 p25.3 8767.096 8767.096 0.0323800962

TIMM10 NM_012456 Hs.235750 11 q12.1 57052.511 57052.511 0.0324167991DOCK9 NM_015296 Hs.314413 13 q32.3 98243.744 98243.744 0.0325763002SFXN4 NM_178867 Hs.523299 10 q26.11 120890.42 120890.431 0.0325919470

MRPL46 NM_022163 Hs.534261 15 q25.3 86803.713 86803.713 0.0326005573C10orf76 NM_024541 Hs.16004 10 q24.32 103595.345 103595.345 0.0326868906CRYL1 NM_015974 Hs.370703 13 q12.11 19875.808 19875.808 0.0326882388TSPAN4 NM_001025234 Hs.437594 11 p15.5 832.823 834.445 0.0327298114

KIAA1147 XM_001126074 Hs.521240 7 q34 141002.996 141002.996 0.0328377011ALG1 NM_019109 Hs.592086 16 p13.3 5061.82 5061.82 0.0328763385

CXorf6 NM_005491 Hs.20136 23 q28 149364.377 149364.377 0.0328902476DNAJB14 NM_001031723 Hs.577426 4 q23 101039.587 101040.704 0.0329546521C4orf14 NM_032313 Hs.8715 4 q12 57524.273 57524.273 0.0331156263

ARHGEF10 NM_014629 Hs.98594 8 p23.3 1759.555 1759.555 0.0331494885SAP18 NM_005870 Hs.524899 13 q12.11 20612.684 20612.684 0.0332903438PCNA NM_002592 Hs.147433 20 p12.3 5043.599 5043.599 0.0333512597

ALDH4A1 NM_003748 Hs.77448 1 p36.13 19070.512 19070.512 0.0333877671TPP1 NM_000391 Hs.523454 11 p15.4 6590.572 6590.572 0.0334372744

SLC5A6 NM_021095 Hs.435735 2 p23.3 27275.962 27275.962 0.0334402559ARL2 NM_001667 Hs.502836 11 q13.1 64538.244 64538.244 0.0334772926

CTDSP1 NM_021198 Hs.652343 2 q35 218972.721 218973.057 0.0334814293TMSL8 NM_021992 Hs.56145 23 q22.1 101655.266 101655.266 0.0335069572

VKORC1 NM_024006 Hs.324844 16 p11.2 31009.676 31009.676 0.0335152964RP11-529I10.4 NM_015448 Hs.555926 10 q24.32 103338.078 103338.078 0.0335680411

TOP3A NM_004618 Hs.592115 17 p11.2 18117.959 18117.959 0.0336517561PHLPPL NM_015020 Hs.531564 16 q22.3 70236.354 70236.354 0.0337005970

TMEM16K NM_018075 Hs.17949 3 p22.1 43382.821 43382.821 0.0337377570IFIT1 NM_001001887 Hs.20315 10 q23.31 91142.301 91142.301 0.0337937367

XRCC5 NM_021141 Hs.388739 2 q35 216682.376 216682.376 0.0338345207ARSD NM_001669 NA 23 p22.33 2832.011 2841.654 0.0338676077CTBP1 NM_001012614 Hs.208597 4 p16.3 1195.227 1195.227 0.0339553927DCTD NM_001012732 Hs.183850 4 q35.1 184048.238 184048.238 0.0339645444

C6orf157 NM_198920 Hs.148609 6 q14.1 83658.907 83658.907 0.0341827379VDP NM_003715 Hs.292689 4 q21.1 76868.852 76868.852 0.0342531105

ARHGAP21 NM_020824 Hs.524195 10 p12.1 24912.55 24912.55 0.0344655816FLI1 NM_002017 Hs.504281 11 q24.3 128069.198 128069.198 0.0346239293

DEPDC5 NM_001007188 Hs.435022 22 q12.2 30480.068 30480.068 0.0346276370FYN NM_002037 Hs.390567 6 q21 112089.179 112089.186 0.0346400976

C17orf70 NM_025161 Hs.313905 17 q25.3 77117.387 77117.387 0.0346446793PHLDB1 NM_015157 Hs.504062 11 q23.3 117982.422 117982.422 0.0346858777NUMBL NM_004756 Hs.326953 19 q13.2 45863.653 45863.653 0.0347080040SRP14 NM_003134 Hs.533732 15 q15.1 38115.534 38115.534 0.0349635314REPIN1 NM_013400 Hs.647086 7 q36.1 149698.793 149699.19 0.0351566895ZNF721 NM_133474 Hs.428360 4 p16.3 423.78 423.78 0.0351657934STK24 NM_001032296 Hs.508514 13 q32.2 97900.455 97900.455 0.0351959081SELS NM_018445 Hs.32148 15 q26.3 99628.737 99629.913 0.0352854485SPA17 NM_017425 Hs.286233 11 q24.2 124048.949 124048.949 0.0353101175RSU1 NM_012425 Hs.524161 10 p13 16672.624 16672.624 0.0353868998FEN1 NM_004111 Hs.409065 11 q12.2 61316.725 61316.725 0.0354339945GNG5 NM_005274 Hs.645427 1 p22.3 84736.679 84736.679 0.0354879065

A3GALT2 XM_060537 NA 1 p35.1 33544.953 33544.953 0.0354989575RP13-15M17.2 XM_937905 Hs.632365 1 p36.22 9571.566 9571.566 0.0355238507

RTN2 NM_005619 Hs.47517 19 q13.32 50680.39 50680.39 0.0356150580ARCN1 NM_001655 Hs.33642 11 q23.3 117948.32 117948.32 0.0356530222RAB12 NM_001025300 Hs.270074 18 p11.22 8599.442 8599.442 0.0358976689NDFIP2 NM_019080 Hs.525093 13 q31.1 78953.287 78953.287 0.0359218515

LOC134145 NM_199133 Hs.481569 5 p15.2 10279.444 10279.444 0.0359828077LLGL1 NM_004140 Hs.513983 17 p11.2 18069.66 18069.66 0.0359973902TRIM46 NM_025058 Hs.287735 1 q22 153412.983 153412.983 0.0360775422NUDT9 NM_024047 Hs.149500 4 q22.1 88562.758 88562.758 0.0361097820PTPRE NM_006504 Hs.127022 10 q26.2 129595.314 129735.823 0.0362368871CAB39L NM_001031724 Hs.87159 13 q14.2 48780.787 48780.787 0.0362639668IRAK1 NM_001025242 Hs.522819 23 q28 152929.15 152929.15 0.0362998268CLPP NM_006012 Hs.515092 19 p13.3 6312.462 6312.462 0.0363486866

MGC9712 NM_152689 Hs.592174 7 p22.3 1549.975 1549.975 0.0364728245USPL1 NM_005800 Hs.533831 13 q12.3 30089.919 30089.919 0.0367185569ITPKA NM_002220 Hs.2722 15 q15.1 39573.413 39573.413 0.0369586839SUGT1 NM_006704 Hs.281902 13 q14.3 52125.001 52125.001 0.0370595539EFHB NM_144715 Hs.120196 3 p24.3 19895.971 19895.971 0.0370991874BAT2 NM_004638 Hs.123239 6 p25.2-p21.33 2836.184 31696.575 0.0371870833PDPR XM_001134215 Hs.461183 16 q22.1 68705.029 68705.029 0.0372143478

TRIM21 NM_003141 Hs.532357 11 p15.4 4362.702 4362.702 0.0373229708MED10 NM_032286 Hs.13885 5 p15.31 6425.039 6425.039 0.0373265766RPL34 NM_000995 Hs.438227 4 q25 109761.17 109761.197 0.0373543563

C22orf28 NM_014306 NA 22 q12.3 31113.568 31113.568 0.0373575648HDAC6 NM_006044 Hs.6764 23 p11.23 48545.43 48545.43 0.0374924523

ZDHHC1 NM_013304 Hs.513672 16 q22.1 65985.828 65985.828 0.0375541780HMBS NM_000190 Hs.82609 11 q23.3 118460.796 118463.906 0.0376696433RBL2 NM_005611 Hs.513609 16 q12.2 52025.9 52025.9 0.0377202916

C11orf9 NM_013279 Hs.473109 11 q12.2 61279.436 61279.436 0.0378004363CHTF18 NM_022092 Hs.153850 16 p13.3 778.647 778.647 0.0378231547C10orf46 NM_153810 Hs.420024 10 q26.11 120430.483 120430.483 0.0378556561

GENX-3414 NM_003943 Hs.109590 4 q21.1 77446.832 77446.832 0.0378880883LYRM4 NM_020408 Hs.387755 6 p25.1 5053.652 5053.652 0.0380614612DMXL2 NM_015263 Hs.511386 15 q21.2 49527.232 49527.232 0.0380829117

WHSC1L1 NM_017778 Hs.608111 8 p12 38251.719 38293.092 0.0382147447ANKDD1A NM_182703 Hs.207157 15 q22.31 62991.153 62991.153 0.0382355263

IGFL3 NM_207393 Hs.365496 19 q13.32 51315.167 51315.167 0.0384863554FKBP1A NM_000801 Hs.471933 20 p13 1297.622 1300.377 0.0386277248

NOL7 NM_016167 Hs.306242 6 p23 13723.537 13723.537 0.0386628507IKZF5 NM_022466 Hs.501289 10 q26.13 124741.952 124741.952 0.0386797694

ZCWPW1 NM_017984 Hs.105191 7 q22.1 99836.43 99836.43 0.0387863298NOMO2 XM_001126428 Hs.460141 16 p12.3 18418.683 18418.683 0.0388279489

ZFYVE19 NM_032850 Hs.121676 15 q15.1 38886.565 38886.565 0.0388814375ACTR1A NM_005736 Hs.153961 10 q24.32 104228.976 104228.976 0.0389092932TNIP2 NM_024309 Hs.368551 4 p16.3 2713.184 2713.184 0.0389695286U2AF2 NM_001012478 Hs.528007 19 q13.42 60857.227 60857.227 0.0391280478

PRDM11 NM_020229 Hs.178715 11 p11.2 45072.139 45072.139 0.0392825536FOXRED1 NM_017547 Hs.317190 11 q24.2 125644.264 125644.264 0.0392832307

BRD7 NM_013263 Hs.437894 16 q12.1 48910.441 48910.441 0.0392840507MRE11A NM_005590 Hs.192649 11 q21 93790.114 93790.114 0.0393277913COL4A1 NM_001845 Hs.17441 13 q34 109599.311 109599.311 0.0393377085MESP1 NM_018670 Hs.447531 15 q26.1 88094.11 88094.11 0.0395677340USP48 NM_001032730 Hs.467524 1 p36.12 21877.38 21926.926 0.0396073917

CAPN12 NM_144691 NA 19 q13.2 43912.671 43912.671 0.0396412790LAMP1 NM_005561 Hs.494419 13 q34 112999.469 112999.469 0.0397003822

RHBDD3 NM_012265 Hs.106730 22 q12.2 27985.843 27985.843 0.0398331934BRWD1 NM_001007246 Hs.190548 21 q22.2 39479.273 39590.235 0.0398758979

CTNNBIP1 XM_001128063 Hs.463759 1 p36.22 9830.92 9830.92 0.0400671093TM9SF2 NM_004800 Hs.130413 13 q32.3 98951.728 98951.728 0.0400762914SAAL1 NM_138421 Hs.591998 11 p15.1 18058.466 18058.466 0.0400940135

RAB33B NM_031296 Hs.591679 4 q31.1 140594.41 140594.41 0.0401095083DKFZp434K1815 NM_152892 Hs.274135 7 q22.1 101892.394 101892.394 0.0403150898

COX4I1 NM_001861 Hs.433419 16 q24.1 84390.696 84390.696 0.0404130870CLDN7 NM_001307 Hs.513915 17 p13.1 7104.183 7104.183 0.0404601975DKK1 NM_012242 Hs.40499 10 q21.1 53744.046 53744.046 0.0404719099

DNAJB13 NM_153614 Hs.567888 11 q13.4 73339.011 73339.011 0.0405727146ATG7 NM_006395 Hs.38032 3 p25.3 11289.101 11289.101 0.0405860895IFIT5 NM_012420 Hs.252839 10 q23.31 91164.418 91164.418 0.0406300397EN2 NM_001427 Hs.134989 7 q36.3 154942.175 154942.175 0.0407203453

BNIP3 NM_004052 Hs.144873 10 q26.3 133631.193 133631.193 0.0409260296UBE1 NM_003334 Hs.533273 23 p11.3 46935.203 46938.238 0.0409445372BRD2 NM_005104 Hs.75243 6 p25.1-p21.32 4122.527 33044.414 0.0410411544FTH1 NM_002032 Hs.524910 11 q12.3 61488.334 61488.334 0.0411584254

C18orf8 NM_013326 Hs.529006 18 q11.2 19337.459 19337.459 0.0412009146RASSF6 NM_177532 Hs.590920 4 q13.3 74657.725 74657.725 0.0412161774GTF2H4 NM_001517 Hs.485070 6 p25.3-p21.33 2122.908 30983.955 0.0415813874

NDUFA11 NM_175614 Hs.406062 19 p13.3 5845.685 5845.685 0.0416646758GJB2 NM_004004 Hs.524894 13 q12.11 19659.605 19659.605 0.0416803311LIMK2 NM_001031801 Hs.474596 22 q12.2 29938.249 29974.347 0.0419907235

RQCD1 NM_005444 Hs.148767 2 q35 219141.921 219141.921 0.0420100768RBX1 NM_014248 Hs.474949 22 q13.2 39677.33 39677.33 0.0421347111

RC3H2 NM_018835 Hs.533499 9 q33.2 124655.896 124655.896 0.0421448401ARHGAP19 NM_032900 Hs.80305 10 q24.1 98971.92 98971.92 0.0422293335TMEM159 NM_020422 Hs.258212 16 p12.2 21077.5 21077.5 0.0422440785

EIF4E2 NM_004846 Hs.292026 2 q37.1 233123.6 233123.6 0.0422513818ECE1 NM_001397 Hs.195080 1 p36.12 21418.938 21418.938 0.0423886536

BHMT2 NM_017614 Hs.114172 5 q14.1 78401.338 78401.338 0.0425909602TAF6 NM_005641 Hs.489309 7 q22.1 99542.629 99542.637 0.0426280310

C20orf116 NM_023935 Hs.471975 20 p13 3119.017 3119.017 0.0426398329LOC144097 NM_138471 Hs.502793 11 q13.1 63337.498 63337.498 0.0426568488FGFR1OP NM_007045 Hs.487175 6 q27 167332.805 167332.805 0.0427237801

CLN8 NM_018941 Hs.127675 8 p23.3 1699.347 1699.347 0.0429149067BID NM_001196 Hs.591054 22 q11.21 16596.905 16596.905 0.0429189323DAP NM_004394 Hs.75189 5 p15.2 10732.405 10732.405 0.0429439801

PPP2CB NM_001009552 Hs.491440 8 p12 30762.668 30762.668 0.0430184630ASCC2 NM_032204 Hs.517438 22 q12.2 28514.602 28514.602 0.0431013745

TMPRSS4 NM_019894 Hs.161985 11 q23.3 117452.975 117452.975 0.0431286713DENND2A NM_015689 Hs.6385 7 q34 139864.688 139864.688 0.0431786733

SCLY NM_016510 Hs.512606 2 q37.3 238634.418 238634.418 0.0433782242PIGY NM_001042616 Hs.26136 4 q22.1 89661.157 89661.157 0.0434152102

SMURF1 NM_020429 Hs.189329 7 q22.1 98462.999 98462.999 0.0434316490CHD9 NM_025134 Hs.59159 16 q12.2 51646.445 51646.445 0.0435142118

PDCD2 NM_002598 Hs.367900 6 q27 170728.375 170732.76 0.0435265232ADAM8 NM_001109 Hs.501574 10 q26.3 134925.911 134925.911 0.0435821845

CLPTM1L NM_030782 Hs.444673 5 p15.33 1371.006 1371.006 0.0435955803CLN5 NM_006493 Hs.30213 13 q22.3 76462.795 76462.795 0.0436961838SOD3 NM_003102 Hs.2420 4 p15.2 24406.182 24406.182 0.0437032455

PCDH7 NM_002589 Hs.570785 4 p15.1 30331.134 30331.134 0.0437526907SMTN NM_006932 Hs.149098 22 q12.2 29807.304 29807.304 0.0437735621

SLC31A1 NM_001859 Hs.532315 9 q32 115023.688 115023.688 0.0438076076GGT1 NM_001032364 Hs.595809 22 q11.23 23309.717 23333.654 0.0438187769REV3L NM_002912 Hs.232021 6 q21 111726.972 111726.972 0.0439022716SAT2 NM_133491 Hs.10846 17 p13.1 7470.28 7470.28 0.0440130481

TRPV2 NM_016113 Hs.279746 17 p11.2 16259.612 16259.612 0.0440131774MCTS1 NM_014060 Hs.102696 23 q24 119621.862 119621.862 0.0440166719FTSJ1 NM_012280 Hs.23170 23 p11.23 48219.492 48221.323 0.0440596442PTPRA NM_002836 Hs.269577 20 p13 2792.84 2851.852 0.0441529754

PARD6G XM_001129334 Hs.352602 18 q23 76016.105 76016.105 0.0442701223CAMK2B XM_001125861 Hs.351887 7 p13 44225.421 44225.421 0.0444036396

ELF2 NM_006874 Hs.596713 4 q31.1 140198.32 140198.32 0.0446337688POLR2G NM_002696 Hs.14839 11 q12.3 62285.59 62285.59 0.0446442208

KIFC1 NM_002263 Hs.436912 6 p25.1-p21.32 4545.778 33467.582 0.0446765234C6orf125 NM_032340 Hs.93235 6 p21.31 33773.323 33773.323 0.0449238128

PFAS NM_012393 Hs.573976 17 p13.1 8093.361 8093.361 0.0450453190NDUFS6 NM_004553 Hs.408257 5 p15.33 1854.508 1854.508 0.0451087689ATP11C NM_001010986 Hs.88252 23 q27.1 138636.17 138636.17 0.0451317375FBXW7 NM_001013415 Hs.561245 4 q31.3 153461.859 153461.86 0.0451671994HTR2A NM_000621 Hs.72630 13 q14.2 46305.513 46305.513 0.0452366936MAPK6 NM_002748 Hs.411847 15 q21.2 50098.738 50098.738 0.0453025328C7orf47 NM_145030 Hs.413359 7 q22.1 99870.847 99870.847 0.0453125073

FLJ20294 NM_017749 Hs.406620 11 p11.2 46374.539 46374.539 0.0453330094ATP5A1 NM_001001937 Hs.298280 18 q21.1 41918.107 41918.107 0.0453964166

SPATA5L1 NM_024063 Hs.369657 15 q21.1 43481.877 43481.877 0.0454256523CPA4 NM_016352 Hs.93764 7 q32.2 129720.229 129720.229 0.0455016302

SORBS3 NM_001018003 Hs.528572 8 p21.3 22465.195 22479.159 0.0455879302OVCA2 NM_080822 Hs.513856 17 p13.3 1892.026 1892.026 0.0456073708

TMEM149 NM_024660 Hs.352548 19 q13.12 40921.991 40921.991 0.0456421928TYW1 NM_018264 Hs.520917 7 q11.21 66099.251 66099.251 0.0459104631MND1 NM_032117 Hs.294088 4 q31.3 154485.25 154485.25 0.0459632603

NARG1 NM_057175 Hs.555985 4 q31.1 140442.125 140442.125 0.0460002075LOC339344 NM_001012643 Hs.515478 19 q13.32 51085.122 51085.122 0.0460981352TMEM161A NM_017814 Hs.631629 19 p13.11 19091.43 19091.43 0.0461305962

COPS8 NM_006710 Hs.531713 2 q37.3 237658.822 237658.822 0.0461840662RAB11FIP2 NM_014904 Hs.173656 10 q26.11 119754.418 119754.418 0.0463330510

RBM9 NM_001031695 Hs.282998 22 q12.3 34469.594 34469.992 0.0464666542ASAHL NM_001042402 Hs.437365 4 q21.1 77050.831 77053.833 0.0466550206RCCD1 NM_001017919 Hs.366401 15 q26.1 89299.109 89299.109 0.0466615920

C9orf100 NM_032818 Hs.534579 9 p13.3 35649.34 35649.34 0.0467310450SH2B1 NM_015503 Hs.15744 16 p11.2 28782.814 28782.814 0.0472167120HLA-G NM_002127 Hs.181244 6 p21.33 29903.496 29903.496 0.0473246743LRRC3 NM_030891 Hs.326579 21 q22.3 44699.82 44699.82 0.0473849854

SLC36A4 NM_152313 Hs.148766 11 q21 92520.499 92520.499 0.0475059462EEF1B2 NM_001037663 Hs.421608 2 q33.3 206732.562 206732.562 0.0476001103C11orf35 NM_173573 Hs.560022 11 p15.5 544.857 544.857 0.0476030342YTHDC1 NM_001031732 Hs.175955 4 q13.2 68858.7 68858.7 0.0476581304ZNF311 NM_001010877 Hs.148218 6 p25.3-p22.1 417.899 29070.572 0.0477534504

SLC44A1 NM_022109 Hs.573495 9 q31.1 107046.749 107046.749 0.0479823413TCP11L1 NM_018393 Hs.533701 11 p13 33017.719 33017.719 0.0480685643REPS1 NM_031922 Hs.334603 6 q24.1 139267.313 139267.313 0.0481354562CENPB NM_001810 Hs.516855 20 p13 3712.499 3712.499 0.0482635574TRIM32 NM_012210 Hs.591910 9 q33.1 118489.429 118489.429 0.0482699297

KIAA1600 NM_020940 Hs.192619 10 q25.3 116571.772 116571.772 0.0484174678KIAA1468 NM_020854 Hs.465323 18 q21.33 58005.503 58005.503 0.0484336129C16orf61 NM_020188 Hs.388255 16 q23.2 79567.201 79567.201 0.0485364122COMMD6 NM_203495 Hs.508266 13 q22.2 74997.35 74997.35 0.0485580825MAPK3 NM_001040056 Hs.861 16 p11.2 30032.926 30032.926 0.0485967691OFD1 NM_003611 Hs.6483 23 p22.2 13662.8 13662.8 0.0486061235

C19orf10 NM_019107 Hs.465645 19 p13.3 4608.565 4608.565 0.0486411195SYK NM_003177 Hs.371720 9 q22.2 92603.89 92603.89 0.0487212550

RFC2 NM_002914 Hs.647062 7 q11.23 73283.769 73283.769 0.0488217316NBPF3 XM_001129803 Hs.325422 1 p36.12 21639.217 21639.217 0.0488893557PTEN NM_000314 Hs.500466 10 q23.31 89613.174 89613.174 0.0489200175

SPAG7 NM_004890 Hs.90436 17 p13.2 4803.245 4803.245 0.0490424594ANKFY1 NM_016376 Hs.513875 17 p13.2 4013.415 4044.523 0.0491381661

FHIT NM_002012 Hs.196981 3 p14.2 59710.077 59710.077 0.0492520767LRP11 NM_032832 Hs.408355 6 q25.1 150181.626 150181.626 0.0493007981ROCK1 NM_005406 Hs.306307 18 q11.1 16783.702 16783.702 0.0493439826C2orf17 NM_024293 Hs.516707 2 q35 219751.197 219751.197 0.0494360724

SPATA2L NM_152339 Hs.374556 16 q24.3 88290.265 88290.265 0.0495238279BUD13 NM_032725 Hs.437341 11 q23.3 116124.102 116124.102 0.0497660965

SLC39A3 NM_144564 Hs.515046 19 p13.3 2683.524 2685.524 0.0498114208PDPK1 XM_001130789 Hs.459691 16 p13.3 2527.97 2527.97 0.0498499806RPL9 NM_000661 Hs.412370 4 p14 39132.141 39132.141 0.0498867760

SNRPB NM_003091 Hs.83753 20 p13 2390.28 2390.28 0.0499092534MOCS1 NM_001075098 Hs.357128 6 p21.2 39981.074 39981.277 0.0499802009

Supplementary Table 7: List of genes whose expression correlate with deletion.

Supplementary Table 8: Gene networks identified as significantly enriched using the Ingenuity Pathways Analysis software based on the list of genes whose expression correlated with copy number losses.

In bold, genes whose expression significantly correlated with copy number loss.

Supplementary Table 9 - Correlation of aCGH and Illumina gene expression data in highly-amplified regions Page 1

chrom Amplicon cytobands Amplicon start Amplicon end BACIDs Gene-Symbol Mean Expression-Gain Mean Expression-No Gain t-test P-value Pearson's r-value Pearson's p-value Spearman's r-value Spearman's P-value Cell line with amplicon1 p13.3 110304373 110690468 RP11-142E15 RBM15 673.1333 533.6951 0.0883 0.670374 0.007461 0.573427 0.050447 SMOV21 p13.3 110304373 110690468 RP11-19H1|RP11-142E15 KCNC4 24.4825 15.267 0.0944 0.613479 0.016039 0.293706 0.336644 SMOV21 p13.3 110304373 110690468 RP11-354C7|RP11-19H1|RP11-142E15 SLC6A17 41.8595 12.5216 0.2472 0.766331 0.001206 0.370629 0.222886 SMOV21 p13.3 110304373 110690468 RP11-354C7 ALX3 10.3603 15.0677 0.6378 -0.042114 0.449702 0.412587 0.17271 SMOV21 p13.3 110304373 110690468 RP11-354C7 FAM40A 298.983 203.2292 0.1195 0.907567 0.000003 0.566434 0.053764 SMOV21 p13.3 110304373 110690468 RP11-354C7 AHCYL1 2515.4018 2133.1476 0.4377 0.729256 0.002706 0.300699 0.325138 SMOV21 q21.3 149888055 151672466 RP11-352B17 SMCP 11.5462 8.8934 0.5774 -0.12804 0.349659 -0.083916 0.817283 HCH11 q21.3 149888055 151672466 RP11-76F1|RP11-92M2 LCE3E 8.5779 2.0754 0.0985 0.089078 0.394371 0.414038 0.17271 HCH11 q21.3 149888055 151672466 RP11-243C14|RP11-440D12 FLG 155.955 62.4576 0.505 0.291619 0.183793 0.603512 0.038651 HCH11 q21.3 149888055 151672466 RP11-212D05 S100A11 2663.5152 2076.0422 0.3863 0.65969 0.008732 0.594406 0.041387 HCH11 q21.3 149888055 151672466 RP11-139D23|RP11-212D05 S100A10 9924.5283 7689.7636 0.3819 0.048956 0.441572 0.300699 0.325138 HCH11 q21.3 149888055 151672466 RP11-139D23 THEM4 44.1384 18.8926 0.1325 0.741355 0.002115 0.392985 0.196764 HCH11 q21.3 149888055 151672466 RP11-114B18|RP11-655A3 RORC 4.8595 11.0971 0.5522 -0.05833 0.430465 -0.13986 0.683366 HCH11 q21.3 149888055 151672466 RP11-114B18|RP11-655A3 TDRKH 5.4419 12.0355 0.1628 -0.460668 0.067526 -0.559441 0.066629 HCH11 q21.3 149888055 151672466 RP11-114B18|RP11-655A3 OAZ3 13.9591 12.8403 0.8421 0.649684 0.010056 0.188811 0.535464 HCH11 q21.3 149888055 151672466 RP11-114B18|RP11-655A3 SNX27 1031.3562 934.1542 0.4649 0.506272 0.047153 0.552448 0.060871 HCH11 q21.3 149888055 151672466 RP11-352B17|RP11-48P22 SPRR1A 82.3506 70.7661 0.3674 0.210353 0.260885 0.475524 0.112478 HCH11 q21.3 149888055 151672466 RP11-48P22|RP11-622P14 SPRR2A 6.703 1.2852 0.5107 0.830806 0.000177 -0.11697 0.749479 HCH11 q21.3 149888055 151672466 RP11-252O16 S100A8 16.9595 11.5987 0.7918 0.700652 0.004584 -0.275543 0.403977 HCH11 q21.3 149888055 151672466 RP11-252O16 PGLYRP4 19.6771 17.0488 0.3756 0.167867 0.305581 0.195804 0.520783 HCH11 q21.3 149888055 151672466 RP11-76F1|RP11-92M2 LCE3B 10.4021 14.5261 0.1451 -0.11811 0.360923 -0.223776 0.499115 HCH11 q21.3 149888055 151672466 RP11-252O16 S100A9 45.0063 9.7356 0.2884 0.732851 0.002519 0.237762 0.436783 HCH11 q21.3 149888055 151672466 RP11-114B18|RP11-655A3 MRPL9 1981.0978 1436.3351 0.0672 0.919495 0.000001 0.664336 0.019621 HCH11 q32.1-q32.2 204438576 208428508 RP11-665L20|RP11-595K11 MAPKAPK2 172.0168 138.4286 0.433 0.72693 0.002832 0.433566 0.150683 HCH11 q32.1-q32.2 204438576 208428508 RP11-645A13|RP11-453H4|RP11-653H3 LAMB3 167.0979 299.0296 0.3523 0.016876 0.47981 -0.147369 0.667151 HCH11 q32.1-q32.2 204438576 208428508 RP11-645A13|RP11-453H4|RP11-653H3 CAMK1G 9.5437 80.4176 0.2609 -0.221422 0.249694 0.041958 0.877651 HCH11 q32.1-q32.2 204438576 208428508 RP11-393J13|RP11-789J18|RP11-718L9|RP11-45F21|RP11-69A2 PLXNA2 0.4604 8.7736 0.122 -0.301954 0.174893 -0.397698 0.218387 HCH11 q32.1-q32.2 204438576 208428508 RP11-367L23|RP11-512L1|RP11-288K21 CD46 1177.7949 836.7374 0.2182 0.844099 0.000105 0.573427 0.050447 HCH11 q32.1-q32.2 204438576 208428508 RP11-288B1|RP11-761M3|RP11-780P19 CD55 1000.2503 749.103 0.543 0.362788 0.127085 0.412587 0.17271 HCH11 q32.1-q32.2 204438576 208428508 RP11-615M18|RP11-164O23 C4BPA 13.7526 1.7135 0.1789 0.43076 0.083411 0.26057 0.397577 HCH11 q32.1-q32.2 204438576 208428508 RP11-733A18|RP11-615M18|RP11-164O23 PFKFB2 73.6611 64.8806 0.7311 0.596093 0.019642 0.174825 0.565371 HCH11 q32.1-q32.2 204438576 208428508 RP11-564A8|RP11-733A18|RP11-615M18 C1ORF116 438.1271 179.5285 0.3444 0.826781 0.000205 0.41958 0.165145 HCH11 q32.1-q32.2 204438576 208428508 RP11-564A8|RP11-733A18|RP11-615M18 FCAMR 53.0649 2.0143 0.4254 0.832096 0.000169 0.331873 0.281431 HCH11 q32.1-q32.2 204438576 208428508 RP11-453H4|RP11-653H3|RP11-345I23 G0S2 0.9813 393.4704 0.1378 -0.287438 0.187455 -0.309867 0.342483 HCH11 q32.1-q32.2 204438576 208428508 RP11-595K11|RP11-237C22|RP11-564A8|RP11-733A18 IL24 2.3476 6.3962 0.3855 -0.144554 0.331157 0.119721 0.691523 HCH11 q32.1-q32.2 204438576 208428508 RP11-615M18|RP11-164O23 C4BPB 3.4215 87.4137 0.2723 -0.266206 0.206585 0.326301 0.292009 HCH11 q32.1-q32.2 204438576 208428508 RP11-665L20|RP11-161C18 DYRK3 39.3336 83.786 0.1694 -0.2528 0.219109 -0.146853 0.667151 HCH11 q32.1-q32.2 204438576 208428508 RP11-665L20|RP11-161C18 LGTN 412.025 392.5703 0.7456 0.385305 0.111455 0.153846 0.611522 HCH11 q32.1-q32.2 204438576 208428508 CTD-2003B3|RP11-665L20|RP11-161C18 RASSF5 7.506 2.4162 0.0162 0.387482 0.110005 0.594406 0.041387 HCH11 q32.1-q32.2 204438576 208428508 CTD-2003B3|RP11-665L20|RP11-161C18 IKBKE 72.6618 73.9628 0.9693 0.036716 0.456127 0.076923 0.791686 HCH11 q32.1-q32.2 204438576 208428508 RP11-421E17 C1ORF186 363.7229 196.3522 0.3858 0.635594 0.012154 0.251748 0.41043 HCH11 q32.1-q32.2 204438576 208428508 RP11-564A8|RP11-733A18 PIGR 55.0776 3.7517 0.4045 0.835773 0.000147 0.449571 0.137098 HCH11 q32.1-q32.2 204438576 208428508 RP11-345I23 IRF6 49.4434 56.9724 0.8197 0.179408 0.293182 -0.087014 0.817283 HCH11 q32.1-q32.2 204438576 208428508 RP11-266N24|RP11-299J10|RP11-156H13 SYT14 9.4127 4.9109 0.1725 0.432431 0.08247 0.687724 0.015198 HCH11 q32.1-q32.2 204438576 208428508 RP11-345I23 C1ORF74 153.164 153.4697 0.9949 0.648154 0.01027 0.076923 0.791686 HCH11 q32.1-q32.2 204438576 208428508 RP11-733A18|RP11-615M18|RP11-164O23 YOD1 343.1196 301.0821 0.69 0.652607 0.009655 0.251748 0.41043 HCH11 q32.2 208638515 209204856 CTD-2016A12|RP11-320H18 HHAT 47.7657 52.3094 0.7779 -0.27888 0.19506 0.055944 0.843056 HCH11 q32.3-q41 212021452 218081188 RP11-161L19 LOC128153 10.0303 2.557 0.3215 0.394549 0.105371 0.275543 0.372531 HCH11 q32.3-q41 212021452 218081188 RP11-135J02|RP11-474I21 LYPLAL1 84.0909 114.1505 0.6544 -0.056331 0.432831 0.049123 0.860324 HCH11 q32.3-q41 212021452 218081188 RP11-101K19 KCTD3 263.7128 182.6808 0.469 0.816268 0.000295 0.006993 0.96493 HCH11 q32.3-q41 212021452 218081188 RP11-105C24|RP11-262H05 CENPF 998.0143 627.3786 0.0304 0.666997 0.007847 0.692308 0.013902 HCH11 q32.3-q41 212021452 218081188 RP11-603B21|RP11-379J09|RP11-370I05|RP11-105C24 PTPN14 153.5354 116.9709 0.266 0.569769 0.026096 0.657343 0.021288 HCH11 q41 218406885 22157422 RP11-322F10 C1ORF115 111.2841 104.0409 0.9067 -0.039501 0.452811 0.125874 0.675241 HCH11 q41 218406885 22157422 RP11-351B05 TAF1A 71.5353 63.1203 0.6422 0.684355 0.006006 0.118881 0.691523 HCH11 q41 218406885 22157422 RP11-92L09|RP11-139E20 DISP1 72.6277 75.2959 0.9447 0.120635 0.35805 0.517483 0.081571 HCH11 q41 218406885 22157422 RP11-120E23 C1ORF58 27.5429 11.1364 0.3203 0.888798 0.000011 0.552448 0.060871 HCH11 q41 218406885 22157422 RP11-351B05|RP11-120E23 C1ORF80 50.0703 33.5273 0.2317 0.758861 0.001438 0.657343 0.021288 HCH11 q41 218406885 22157422 RP11-18A13|RP13-918G03 SUSD4 278.3878 58.0062 0.1203 0.595591 0.019754 0.615385 0.033582 HCH11 q41 218406885 22157422 RP11-392D11|RP11-49H01 DUSP10 38.5638 10.4876 0.0795 0.585332 0.022131 0.587413 0.044262 HCH11 q41 218406885 22157422 RP11-322F10 HLX1 4.1058 9.1765 0.3529 -0.196097 0.275584 -0.055944 0.886335 HCH11 q41 218406885 22157422 RP11-18A13 TLR5 12.003 6.28 0.3781 0.677303 0.006711 0.413315 0.17271 HCH11 q41 218406885 22157422 RP11-322F10 MOSC2 51.2639 112.1404 0.0762 -0.008216 0.490168 -0.035212 0.938663 HCH11 q41 218406885 22157422 RP11-641C15|RP11-332J14|RP11-578D17|RP11-322F10 MARK1 11.8972 11.5025 0.9645 0.175434 0.297432 0.217534 0.477883 HCH11 q41 218406885 22157422 RP11-637H05|RP11-365E24 RAB3GAP2 684.335 736.9142 0.6717 0.545318 0.033247 -0.020979 0.973694 HCH11 q41 218406885 22157422 RP11-322F10 MOSC1 115.4737 34.2833 0.2777 0.866002 0.000039 0.297297 0.336644 HCH11 q42.13 225278001 225528871 RP11-143H11|RP11-1B20|RP11-274L11 CDC42BPA 44.2678 48.3408 0.7232 0.193178 0.278633 -0.153846 0.651073 HCH11 q42.2 230253252 230894578 RP11-399B22|RP11-98M05 SIPA1L2 577.3989 329.3901 0.3826 0.055215 0.434152 0.398601 0.188518 HCH11 q42.2-q42.3 231277906 233546093 RP11-400N14|RP11-782E07 KCNK1 510.667 342.6369 0.3223 0.425231 0.08657 0.426573 0.157803 HCH11 q42.2-q42.3 231277906 233546093 RP11-575P21|RP11-659N02|RP11-740C10|RP11-710E06|RP11-757N18 PCNXL2 34.1234 40.6545 0.415 -0.360768 0.128543 -0.321678 0.319472 HCH11 q42.2-q42.3 231277906 233546093 RP11-710E06|RP11-757N18|RP11-50C04 KIAA1804 60.6298 36.5271 0.2895 0.687929 0.00567 0.517483 0.081571 HCH11 q42.2-q42.3 231277906 233546093 RP11-782E07 C1ORF31 145.487 111.0337 0.2009 0.232166 0.239028 0.167832 0.580588 HCH11 q42.2-q42.3 231277906 233546093 RP11-557K05 IRF2BP2 413.0789 213.6588 0.1601 0.861657 0.000048 0.51049 0.086244 HCH11 q42.2-q42.3 231277906 233546093 RP11-37J02 ARID4B 67.5218 26.329 0.0978 0.903243 0.000004 0.706294 0.011558 HCH11 q42.2-q42.3 231277906 233546093 RP11-557K05 TOMM20 7635.8383 6210.475 0.2785 0.702231 0.00446 0.412587 0.17271 HCH11 q42.2-q42.3 231277906 233546093 RP11-683N11|RP11-347H11 TARBP1 236.5295 114.6858 0.0049 0.871255 0.00003 0.846154 0.000682 HCH11 q42.2-q42.3 231277906 233546093 RP11-37J02 RBM34 1021.2961 545.1563 0.1324 0.957337 0 0.811189 0.001869 HCH11 q42.3 233834184 234051430 RP11-259C11|RP11-45L02 GNG4 142.2079 49.3441 0.4009 -0.104604 0.376394 0.161405 0.595973 HCH11 q43 235879553 238303887 RP11-652F18|CTD-2026O09|RP11-484B19 RYR2 6.9695 10.0744 0.4689 0.157831 0.316509 -0.083916 0.817283 HCH11 q43 235879553 238303887 RP11-528E16|RP11-34C07|RP11-115K06|RP11-52B06|RP11-35L17 CHRM3 2.6488 23.6913 0.1731 -0.294585 0.181217 -0.28874 0.378709 HCH11 q43 239134227 239930784 RP11-409K12|CTD-2110B24 OPN3 53.3384 110.0062 0.3452 0.21185 0.259359 -0.132867 0.699712 HCH11 q43 239134227 239930784 RP11-409K12|CTD-2110B24 CHML 11.4198 9.8005 0.7737 0.110486 0.369637 0.006993 0.96493 HCH11 q43 239134227 239930784 RP11-409K12|CTD-2110B24 KMO 8.5687 25.5258 0.4012 -0.154815 0.319818 -0.119299 0.732775 HCH11 q43 239134227 239930784 RP11-69J06|RP11-140P07|RP11-409K12 FH 2490.61 1748.2778 0.1148 0.882766 0.000016 0.713287 0.010502 HCH1

1 q43 239134227 239930784RP11-25B04|RP11-326A07|RP11-755E14|CTD-2003B13|RP11-124K15|RP11-735I20|RP11-81A24|RP11-

795D04|RP11-69J06 RGS7 3.7641 1.0916 0.4433 0.395355 0.10485 0.089345 0.774731 HCH11 q44 246570675 246944046 RP11-378I20 OR5BU1 11.2125 7.2256 0.2278 0.119287 0.359583 0.20979 0.491988 HCH11 q44 246570675 246944046 RP11-378I20 OR2T35 69.4849 51.0466 0.0871 0.199456 0.272092 0.566434 0.053764 HCH12 q11.1-q11.2 94973470 96126973 RP11-440D17 TRIM43 64.9158 61.4373 0.7739 0.617358 0.015302 0.482517 0.106838 OVAS2 q11.1-q11.2 94973470 96126973 RP11-468G05|RP11-203K11 FAHD2A 24.3511 23.1915 0.8855 0.322947 0.157496 0.195804 0.520783 OVAS2 q11.1-q11.2 94973470 96126973 CTD-2365A22 PROM2 151.9963 122.7798 0.8166 -0.019396 0.476797 0.333552 0.281431 OVAS2 q11.1-q11.2 94973470 96126973 RP11-715J06 ZNF2 22.9745 21.4445 0.752 0.62326 0.014228 0.328671 0.281431 OVAS2 q11.1-q11.2 94973470 96126973 RP11-715J06 ZNF514 30.3746 35.7793 0.5799 0.183195 0.289154 -0.132867 0.699712 OVAS2 q11.1-q11.2 94973470 96126973 RP11-645D10|RP11-715J06 MRPS5 823.0469 578.8448 0.1417 0.906014 0.000003 0.503497 0.091104 OVAS2 q11.1-q11.2 94973470 96126973 RP11-645D10|RP11-715J06 MAL 29.8575 107.5276 0.4765 -0.241062 0.230347 0.083916 0.774731 OVAS2 q11.2 96942431 98788598 RP11-462C12|RP11-762L12 ACTR1B 438.308 320.7427 0.1988 0.853242 0.000071 0.356643 0.241464 OVAS2 q11.2 96942431 98788598 RP11-762L12|RP11-173M04 ZAP70 5.0129 7.4278 0.1893 -0.111332 0.368667 -0.062937 0.86898 OVAS2 q11.2 96942431 98788598 RP11-297M15 DKFZP434N062 348.534 393.447 0.7576 0.093688 0.389014 0.132867 0.659094 OVAS2 q11.2 96942431 98788598 RP11-692C08 MGC42367 18.0857 175.049 0.0413 -0.43517 0.080941 -0.300699 0.354333 OVAS2 q11.2 96942431 98788598 RP11-238K03|RP11-692C08 MGAT4A 126.2016 83.9601 0.4738 0.527904 0.03906 0.195804 0.520783 OVAS2 q11.2 96942431 98788598 RP11-284J08|RP11-238K03 INPP4A 31.3931 12.3765 0.2008 0.920272 0.000001 0.58042 0.047281 OVAS2 q11.2 96942431 98788598 RP11-238K03|RP11-692C08 UNC50 1339.1925 1123.414 0.3626 0.849937 0.000082 0.426573 0.157803 OVAS2 q11.2 96942431 98788598 RP11-238K03|RP11-692C08 MGC52110 322.8875 274.1104 0.5289 0.728968 0.002721 0.307692 0.313863 OVAS2 q11.2 96942431 98788598 RP11-462C12|RP11-762L12 COX5B 6842.3383 5460.3288 0.3015 0.801669 0.000467 0.398601 0.188518 OVAS2 q11.2 99280912 100410870 RP11-436F06 LOC129530 34.6911 16.0167 0.3786 0.763343 0.001295 0.111888 0.707933 OVAS2 q11.2 99280912 100410870 RP11-285I04 CHST10 59.8309 63.7648 0.9014 -0.257878 0.214326 -0.062937 0.86898 OVAS2 q11.2 99280912 100410870 RP11-63E01 TXNDC9 770.8474 362.6394 0.009 0.131856 0.345357 0.517483 0.081571 OVAS2 q11.2 99280912 100410870 RP11-63E01 EIF5B 501.2285 431.6629 0.223 0.611721 0.016381 0.671329 0.018053 OVAS2 q11.2 99280912 100410870 RP11-622B21 REV1L 360.2726 217.2823 0.0057 0.896237 0.000007 0.762238 0.00495 OVAS2 q11.2 99280912 100410870 RP11-285I04 LONRF2 14.3396 37.4845 0.2238 -0.378451 0.116092 -0.545455 0.074902 OVAS

2 q33.2-q33.3 204004773 206311412 RP11-475D24|RP11-48O16 NRP2only one cell line with

gain/amplificationonly one cell line with

gain/amplification N/A -0.603517 0.018042 -0.664336 0.023981 HCH1

2 q33.2-q33.3 204004773 206311412 RP11-711B14|CTD-2300I22 RAPH1only one cell line with


gain/amplification N/A 0.749084 0.001792 0.615385 0.033582 HCH13 q21.3 128748033 129266213 RP11-109F07|RP11-653L06|RP11-636K10|CTD-2342N21 ABTB1 200.4706 93.3106 0.0217 0.63 0.013066 0.622378 0.031239 SMOV23 q21.3 128748033 129266213 RP11-109F07|RP11-653L06|RP11-636K10|CTD-2342N21 MCM2 835.7396 522.6835 0.0825 0.628486 0.013321 0.384615 0.20524 SMOV23 q21.3 128748033 129266213 RP11-109F07|RP11-653L06|RP11-636K10|CTD-2342N21|RP11-757G16|RP11-323P10 MGLL 284.2785 266.48 0.8531 0.082976 0.401487 0.153846 0.611522 SMOV23 q21.3 128748033 129266213 RP11-109F07 GPR175 469.5462 447.8789 0.8371 0.324084 0.156581 0.405594 0.1805 SMOV23 q21.3 128748033 129266213 RP11-109F07|RP11-653L06|RP11-636K10|CTD-2342N21 PODXL2 511.8896 394.6914 0.369 0.246823 0.2248 0.461538 0.12437 SMOV23 q21.3 128748033 129266213 RP11-578I20 SEC61A1 1008.0718 768.7071 0.318 0.598007 0.019221 0.426573 0.157803 SMOV23 q24-q25.1 150333246 150648699 RP11-645N21|RP11-193G12 HPS3 128.0859 102.2794 0.2943 0.425988 0.086133 0.300699 0.325138 OVMANA3 q24-q25.1 150333246 150648699 RP11-795E20|CTD-2192F6 TM4SF1 7197.124 5834.8447 0.5917 0.379197 0.115582 0.573427 0.050447 OVMANA3 q24-q25.1 150333246 150648699 RP11-645N21|RP11-193G12|RP11-206M11 CP 2554.7366 337.4073 0.0061 0.728855 0.002728 0.559441 0.057238 OVMANA3 q24-q25.1 150333246 150648699 RP11-206M11|RP11-795E20|CTD-2192F6 TM4SF18 808.335 281.5288 0.1589 0.654381 0.009418 0.482517 0.106838 OVMANA3 q25.1 151142896 151638691 RP11-687O05 PFN2 1082.7342 784.074 0.2901 0.555825 0.030033 0.496503 0.096154 OVISE3 q25.1 151142896 151638691 RP11-687O05 RNF13 180.23 114.6149 0.0699 0.651609 0.009791 0.461538 0.12437 OVISE3 q25.1 151142896 151638691 RP11-159D07 TSC22D2 233.1764 215.5322 0.62 0.410477 0.095342 0.223776 0.463978 OVISE3 q26.31 174785038 176200817 RP11-99M11|RP11-145K15|RP11-818K16|RP11-91A17|RP11-148E11 NLGN1 3.828 85.0709 0.2282 -0.239726 0.231643 -0.072511 0.851682 OVMANA4 p16.2 3220657 4018592 RP11-565K22 RGS12 50.4784 43.8416 0.724 0.126503 0.351396 -0.426573 0.176577 ES24 p16.2 3220657 4018592 RP11-565K22 HGFAC 5.5115 15.4607 0.5744 -0.260847 0.211552 -0.293706 0.366408 ES24 p16.2 3220657 4018592 RP11-565K22|RP11-165K04 LRPAP1 547.8071 641.1388 0.5882 -0.1688 0.304573 -0.41958 0.184481 ES25 p15.31-p15.2 7393218 10150751 RP11-315E16 MGC5297 215.8175 101.8526 0.0516 0.904445 0.000004 0.713287 0.010502 HCH15 p15.31-p15.2 7393218 10150751 RP11-259D10|RP11-315E16 MTRR 467.3246 197.1642 0.0325 0.93932 0 0.867133 0.000248 HCH15 p15.31-p15.2 7393218 10150751 CTD-2245F4|RP11-5H13|RP11-698N05|RP11-279I13|RP11-340B04 SEMA5A 6.9938 9.7201 0.7909 0.331117 0.150978 0.31192 0.313863 HCH15 p15.2 10636001 12358211 RP11-215G15|RP11-114H22|RP11-584F21 DAP 2073.737 2061.408 0.985 0.484151 0.056463 0.496503 0.096154 HCH15 p15.2-p15.1 12352114 16772158 RP11-39H19 FLJ20152 62.447 28.7731 0.1718 0.511671 0.04504 0.307692 0.313863 HCH15 p15.2-p15.1 12352114 16772158 RP11-707B08 MYO10 3346.4812 1609.3099 0.0441 0.851037 0.000079 0.678322 0.01658 HCH15 p15.2-p15.1 12352114 16772158 RP11-21H05|RP11-657I12|RP11-39H19 ZNF622 1535.9665 1056.1256 0.0192 0.929969 0 0.797203 0.002553 HCH15 p15.2-p15.1 12352114 16772158 RP11-812F17 ANKH 3.8805 4.0961 0.8795 0.234332 0.236901 0.104895 0.724465 HCH15 p15.2-p15.1 12352114 16772158 RP11-812F17 FAM105B 272.282 170.1983 0.0852 0.865776 0.00004 0.769231 0.004382 HCH15 p15.2-p15.1 12352114 16772158 RP11-611H04|RP11-812F17 FAM105A 18.6803 15.515 0.6947 0.280008 0.194049 0.195804 0.520783 HCH15 p15.2-p15.1 12352114 16772158 RP11-683D22|RP11-674E20|RP11-20B15|RP11-121K1|CTD-2210M12|RP11-611H04 TRIO 40.5014 43.458 0.8183 0.319791 0.160052 0.538462 0.068633 HCH1

5 p15.2-p15.1 12352114 16772158 RP11-662I12|RP11-796F03|RP11-18B15|RP11-103J10|RP11-487E3|RP11-458F04|RP11-288I14|RP11-466J03 DNAH5 8.6047 14.0458 0.4261 -0.110363 0.369777 -0.090909 0.800198 HCH15 p15.1-p14.3 17571914 21158365 CTD-2015I02|RP11-433B15|RP11-784E22|RP11-211F04|RP11-333P14 CDH18 0.4229 19.3391 0.3231 -0.07082 0.415735 -0.387185 0.227443 HCH15 p14.3 21549827 21907045 RP11-650G16 CDH12 2.4155 6.8019 0.5337 0.062548 0.425482 0.259651 0.397577 HCH1

5 p14.3 22348790 23262939RP11-301A11|RP11-428E10|RP11-44L10|RP11-59E15|RP11-736D14|RP11-340I24|RP11-794L13|RP11-

45G01|RP11-16L22 CDH12 2.4155 6.8019 0.5337 0.062468 0.425576 0.259651 0.397577 HCH15 p13.3 29636448 31579045 RP11-705N10|RP11-742H07 RNASEN 807.3985 491.2723 0.0843 0.926257 0.000001 0.559441 0.057238 HCH15 p13.3 29636448 31579045 RP11-800K4|RP11-743K06|RP11-705N10 CDH6 725.2357 111.3582 0.112 0.336072 0.147095 0.259651 0.397577 HCH15 p13.2 35821274 37106944 RP11-67N10 IL7R 25.4669 1.0754 0.2317 0.164859 0.308843 0.522082 0.081571 HCH15 p13.2 35821274 37106944 RP11-694C10|RP11-612J21|RP11-816N21 LMBRD2 15.9411 5.742 0.3181 0.82492 0.000219 0.007018 0.96493 HCH15 p13.2 35821274 37106944 RP11-694C10|RP11-612J21|RP11-816N21 SKP2 433.625 498.7488 0.7599 -0.062745 0.42525 0.097902 0.741114 HCH15 p13.2 35821274 37106944 RP11-151J19|RP11-777A22|RP11-760F01 SLC1A3 153.6127 268.4605 0.6752 -0.115082 0.364377 -0.084211 0.817283 HCH15 p13.2 35821274 37106944 RP11-369L23|RP11-169M01 NIPBL 61.3173 41.6059 0.0817 0.852122 0.000075 0.391608 0.196764 HCH15 p13.2 35821274 37106944 RP11-67N10 FLJ23577 2.8529 3.903 0.5186 0.127389 0.350395 -0.020979 0.973694 HCH15 p13.2-p13.1 37524528 40467093 RP11-736O24 FLJ39155 0.6716 7.5472 0.3564 -0.167237 0.306264 -0.477196 0.127473 HCH15 p13.2-p13.1 37524528 40467093 RP11-114K12|RP11-430L23 RICTOR 362.3871 237.188 0.0349 0.64345 0.010949 0.461538 0.12437 HCH15 p13.2-p13.1 37524528 40467093 RP11-130B9|RP11-736O24|RP11-712G5|RP11-767K3|RP11-95K06 LIFR 37.1683 11.1945 0.1339 0.096161 0.386146 0.528182 0.07708 HCH15 p13.2-p13.1 37524528 40467093 RP11-114K12 OSMR 85.0098 60.2052 0.2693 0.476271 0.060038 0.132867 0.659094 HCH15 p13.2-p13.1 37524528 40467093 RP11-79P22|RP11-171B01|CTD-2165G8|RP11-735P21 DAB2 186.7275 118.5008 0.7202 0.095241 0.387213 0.301756 0.325138 HCH15 p13.2-p13.1 37524528 40467093 RP11-49C16|RP11-716I08|RP11-672F08|RP11-285H04|RP11-238D12|RP11-19H09 WDR70 206.7604 156.5416 0.0301 0.049961 0.440379 0.195804 0.520783 HCH15 p13.1-p12 40933118 42863532 RP11-237B16 SEPP1 6.072 11.3924 0.5064 0.112799 0.366987 -0.246539 0.457102 HCH15 p13.1-p12 40933118 42863532 RP11-237B16 GHR 1.9058 13.5907 0.3544 -0.125373 0.352675 -0.232036 0.484911 HCH15 p13.1-p12 40933118 42863532 RP11-433D07|RP11-423L16 FBXO4 44.2192 32.5659 0.2252 0.520626 0.041673 0.41958 0.165145 HCH15 p13.1-p12 40933118 42863532 RP11-433D07|RP11-423L16 LOC285636 783.3502 554.8136 0.0111 0.785558 0.000738 0.671329 0.018053 HCH15 p13.1-p12 40933118 42863532 RP11-723P23|RP11-597B23|RP11-433D07|RP11-423L16 OXCT1 83.084 68.3577 0.8361 0.115856 0.363494 0.125874 0.675241 HCH15 p12 44285204 45103530 RP11-422A12 MRPS30 1439.8107 941.8298 0.1896 0.887023 0.000012 0.377622 0.213947 HCH15 q11.1-q11.2 49910718 51224825 RP11-83A10|RP11-281B03 ISL1 72.7733 86.3466 0.8519 0.363276 0.126734 0.118881 0.691523 HCH1

6 p21.1 43851257 44165113 RP11-21M09|RP11-463G18 VEGFonly one cell line with


gain/amplification N/A 0.046291 0.444736 0.559441 0.057238 OVMANA

6 q26 161351635 162048857 RP11-755O19|RP11-421L20|RP11-653O06|RP11-784M19|RP11-658H22 PARK2only one cell line with


gain/amplification N/A -0.332057 0.150237 -0.335664 0.297385 ES2

6 q26 161351635 162048857 RP11-271F03 MAP3K4only one cell line with


gain/amplification N/A 0.126714 0.351157 0.398601 0.188518 ES2

6 q26 161351635 162048857 RP11-271F03|RP11-755O19 AGPAT4only one cell line with


gain/amplification N/A 0.212931 0.25826 0.13986 0.643088 ES27 p22.1-p21.3 7010427 8651958 RP11-592J09|RP11-783J15 GLCCI1 25.2215 22.2218 0.7027 0.454245 0.070766 0.118881 0.691523 HCH17 p22.1-p21.3 7010427 8651958 RP11-394P22 C1GALT1 122.4409 74.0529 0.3134 0.745751 0.001926 0.055944 0.843056 HCH17 p22.1-p21.3 7010427 8651958 RP11-530D12|RP11-420K20 RPA3 3199.8093 2371.6925 0.1607 0.782141 0.000809 0.48951 0.101398 HCH17 p22.1-p21.3 7010427 8651958 RP11-783J15|RP11-714P24 ICA1 374.8836 394.949 0.7369 -0.135122 0.341688 -0.048951 0.903739 HCH17 p22.1-p21.3 7010427 8651958 RP11-530D12|RP11-420K20 FLJ20323 410.1639 219.5463 0.0313 0.875943 0.000023 0.797203 0.002553 HCH17 p15.2-p15.1 27914550 31297263 RP11-292F7|RP11-446A08|RP11-164O06 FLJ22374 158.9504 36.8656 0.3956 0.940331 0 0.391608 0.196764 HCH17 p15.2-p15.1 27914550 31297263 RP11-752C11|RP11-310B14|RP11-711E03 SCRN1 1045.8774 594.7012 0.174 0.56511 0.027371 0.594406 0.041387 HCH17 p15.2-p15.1 27914550 31297263 RP11-651D09|RP11-396N02|RP11-420A12|RP11-695P15|RP11-34A02 JAZF1 57.655 46.4881 0.7279 0.000274 0.499672 0.090909 0.757871 HCH17 p15.2-p15.1 27914550 31297263 RP11-695P15|RP11-643O08|RP11-620P19|RP11-49K01|RP11-350P13 CREB5 35.2682 74.06 0.1429 -0.344213 0.140831 -0.27972 0.391233 HCH17 p15.2-p15.1 27914550 31297263 RP11-350P13|RP11-630G13|RP11-754K17 KIAA0644 7.8848 2.6458 0.1651 0.846971 0.000094 0.531469 0.072769 HCH17 p15.2-p15.1 27914550 31297263 RP11-630G13|RP11-754K17|RP11-957N15|RP11-306F13 CPVL 317.4807 228.7203 0.6261 0.49793 0.050539 0.398601 0.188518 HCH17 p15.2-p15.1 27914550 31297263 RP11-957N15|RP11-306F13|RP11-66M9|RP11-388P14|RP11-723E14|RP11-520L8|RP11-550A18 CHN2 4.5415 10.8955 0.1745 0.021606 0.474156 -0.056339 0.886335 HCH17 p15.2-p15.1 27914550 31297263 RP11-368L13 LOC222171 7.1905 4.0268 0.398 0.819409 0.000265 0.381647 0.213947 HCH17 p15.2-p15.1 27914550 31297263 RP11-310B14|RP11-711E03|RP11-589C01 FKBP14 273.8188 207.8355 0.3341 0.549567 0.031921 0.13986 0.643088 HCH17 p15.2-p15.1 27914550 31297263 RP11-111I09|RP11-7E21 ZNRF2 32.1865 20.5905 0.5329 0.831274 0.000174 0.202797 0.50629 HCH17 p15.2-p15.1 27914550 31297263 RP11-7E21 CARD4 18.4309 17.7645 0.9095 0.480977 0.057887 0.048951 0.860324 HCH17 p15.2-p15.1 27914550 31297263 RP11-600K23|RP11-292F7 GARS 5469.4709 4193.4932 0.4715 0.953133 0 0.230769 0.450277 HCH17 p15.2-p15.1 27914550 31297263 RP11-164O06|RP11-756J13 AQP1 592.6992 75.1334 0.439 -0.070192 0.416473 -0.055944 0.886335 HCH17 p15.2-p15.1 27914550 31297263 RP11-600K23 C7ORF24 841.2124 563.038 0.5002 0.948106 0 0.363636 0.232058 HCH1

Page 1

Supplementary Table 9 - Correlation of aCGH and Illumina gene expression data in highly-amplified regions Page 2

8 q23.1 107896977 108678924 RP11-773L15|RP11-543N20 ANGPT1 15.1929 1.8017 0.314 0.170072 0.303199 0.116018 0.707933 OVISE11 q13.2-q13.4 68456763 71048199 RP13-597L24 MYEOV 2534.391 3255.7781 0.6161 0.119282 0.359589 0.181818 0.550328 SMOV211 q13.2-q13.4 68456763 71048199 CTD-2009H2|RP11-699M19|CTD-2192B11|RP11-681H17|RP11-124K14 CCND1 9002.7445 6703.2834 0.2088 0.436698 0.080095 0.230769 0.450277 SMOV211 q13.2-q13.4 68456763 71048199 CTD-2192B11|RP11-681H17|RP11-124K14|CTD-2234J21 ORAOV1 1143.182 254.4139 0.0047 0.875955 0.000023 0.475524 0.112478 SMOV211 q13.2-q13.4 68456763 71048199 RP11-347I13 CTTN 2102.27 730.937 0.011 0.89773 0.000006 0.783217 0.003384 SMOV211 q13.2-q13.4 68456763 71048199 RP11-626H12|RP11-240K12|RP11-517E18 TMEM16A 13.5009 8.7242 0.6973 0.04198 0.44986 0.055944 0.843056 SMOV211 q13.2-q13.4 68456763 71048199 RP11-622F05 IGHMBP2 86.135 41.0003 0.0004 0.946725 0 0.741259 0.006967 SMOV211 q13.2-q13.4 68456763 71048199 RP11-622F05|RP11-554A11 TPCN2 454.9718 121.316 0 0.942086 0 0.391608 0.196764 SMOV211 q13.2-q13.4 68456763 71048199 RP11-347I13|CTD-2011L13 SHANK2 6.3609 15.2887 0.3997 -0.183683 0.288636 0.014035 0.947413 SMOV211 q13.2-q13.4 68456763 71048199 RP11-517E18 FADD 1933.2216 672.2786 0.0073 0.896905 0.000006 0.482517 0.106838 SMOV211 q13.2-q13.4 68456763 71048199 RP11-53L14|RP11-53L14|RP11-660L16 DHCR7 2565.41 617.9808 0.0002 0.860838 0.00005 0.531469 0.072769 SMOV211 q13.2-q13.4 68456763 71048199 RP11-53L14|RP11-53L14|RP11-660L16|RP11-684B02 NADSYN1 1038.2966 412.3342 0.0012 0.933891 0 0.678322 0.01658 SMOV211 q13.2-q13.4 68456763 71048199 RP11-517E18|RP11-347I13 PPFIA1 736.2234 273.1476 0.0002 0.934855 0 0.594406 0.041387 SMOV211 q22.1-q22.3 98418657 103160803 RP11-451F15|RP11-416A08|RP11-111A13|RP11-605B08 YAP1 2975.7735 1398.3403 0.0033 0.871162 0.00003 0.545455 0.064668 ES211 q22.1-q22.3 98418657 103160803 RP11-451F15 MGC13040 134.5755 50.0748 0.1663 0.819009 0.000269 0.454545 0.130628 ES211 q22.1-q22.3 98418657 103160803 RP11-556M24 DCUN1D5 2198.2705 1196.4108 0.0332 0.891625 0.000009 0.433566 0.150683 ES211 q22.1-q22.3 98418657 103160803 RP11-109J08|RP11-347H03 MMP3 536.295 0.251 0.0162 0.90023 0.000005 0.293726 0.336644 ES211 q22.1-q22.3 98418657 103160803 RP11-109J08 MMP1 8328.3999 134.6685 0.0177 0.893317 0.000008 0.097902 0.741114 ES211 q22.1-q22.3 98418657 103160803 RP11-109J08 MMP10 1.103 269.5278 0.6744 -0.147913 0.327431 -0.371382 0.246255 ES211 q22.1-q22.3 98418657 103160803 RP11-4C24 MMP27 7.5453 68.9295 0.679 0.05145 0.438613 0.34965 0.251105 ES211 q22.1-q22.3 98418657 103160803 RP11-690J01|RP11-667C11 MMP7 6.4356 6012.1914 0.242 -0.27108 0.202116 -0.307692 0.342483 ES211 q22.1-q22.3 98418657 103160803 RP11-605B08|RP11-690J01 TMEM123 2306.321 1883.6013 0.5015 0.203677 0.267729 0.048951 0.860324 ES211 q22.1-q22.3 98418657 103160803 RP11-605B08 BIRC2 142.5266 90.3787 0.2622 0.51679 0.043095 0.244755 0.4235 ES211 q22.1-q22.3 98418657 103160803 RP11-515I9|RP11-361D18|RP13-498M12|RP11-93D15|RP11-639F16 TRPC6 10.2885 12.5477 0.8611 0.168234 0.305184 0.161976 0.595973 ES211 q22.1-q22.3 98418657 103160803 RP11-605B08 BIRC3 69.0733 271.1669 0.2371 -0.163871 0.309916 -0.27972 0.391233 ES217 q21.2 35833079 36487193 RP11-51J19 CCR7 0.2819 6.3036 0.4272 -0.062979 0.424973 -0.11238 0.749479 SMOV217 q21.2 35833079 36487193 RP11-51J19 TNS4 23.457 28.2361 0.3691 -0.352859 0.134338 -0.174825 0.603728 SMOV217 q21.2 35833079 36487193 RP11-372J02 SMARCE1 825.3979 799.0616 0.903 0.396411 0.104169 0.202797 0.50629 SMOV217 q21.2 35833079 36487193 RP11-372J02 KRT25C 8.2205 849.4636 0.2402 -0.199569 0.271974 -0.339775 0.297385 SMOV217 q21.2 35833079 36487193 RP11-625J08 KRTAP2-4 21.2856 468.1591 0.2483 -0.346372 0.139195 -0.326301 0.319472 SMOV217 q21.2 35833079 36487193 RP11-146O06|RP11-625J08 KRT23 99.9244 69.5163 0.8081 0.335032 0.147906 0.563394 0.057238 SMOV217 q21.2 35833079 36487193 RP11-372J02 KRT24 5.5122 59.5483 0.2463 -0.349288 0.137 -0.137772 0.699712 SMOV217 q21.2 35833079 36487193 RP11-372J02 KRT25A 12.6115 5.8329 0.3214 0.251612 0.220235 0.545455 0.064668 SMOV217 q21.2 35833079 36487193 RP11-372J02 TMEM99 800.1853 799.6455 0.9973 -0.080071 0.404883 0.062937 0.825856 SMOV217 q21.2 35833079 36487193 RP11-372J02 KRT10 1567.7728 1513.0299 0.8481 0.278404 0.195487 0.160839 0.595973 SMOV217 q21.2 35833079 36487193 RP11-51J19 IGFBP4 62.1314 42.9064 0.7224 -0.093183 0.3896 0 0.982461 SMOV217 q21.31-q21.32 41793763 42244748 RP11-84A07 WNT3 31.1229 6.0125 0.0253 0.514189 0.044077 0.526319 0.07708 OVSAYO17 q21.31-q21.32 41793763 42244748 CTD-2013G18|RP11-84A07 NSF 506.0416 394.5829 0.1911 0.186642 0.285504 0.160839 0.595973 OVSAYO17 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB9 314.5976 143.5916 0.4948 0.798803 0.000508 0 0.982461 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12 HOXB2 296.7162 257.3731 0.8444 0.316338 0.162874 -0.154387 0.651073 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB3 43.7193 18.2867 0.4024 0.809789 0.000363 0.13986 0.643088 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB5 329.2622 453.0839 0.7099 0.415336 0.092398 -0.125874 0.716184 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB7 681.9602 728.6064 0.8834 0.32514 0.155732 -0.160839 0.63514 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB8 187.314 341.7935 0.5861 0.082176 0.402421 -0.167832 0.619356 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB6 55.6642 28.2244 0.401 0.786808 0.000714 0.188811 0.535464 RMG117 q21.32 43565909 44186865 RP11-420B16|RP11-94I12|RP11-600O07 HOXB4 69.1308 67.6221 0.9689 -0.157149 0.317255 -0.125874 0.716184 RMG117 q21.33 44816026 46507874 RP11-797N21|RP11-94C24|RP11-121F10 EPN3 30.442 14.8981 0.2677 0.323754 0.156846 0.223776 0.463978 RMG117 q21.33 44816026 46507874 RP11-506D12 TOB1 603.2112 355.0705 0.2172 0.516268 0.04329 0.356643 0.241464 RMG117 q21.33 44816026 46507874 RP11-294J22 CROP 211.1277 113.5485 0.1305 0.910055 0.000002 0.734266 0.007754 RMG117 q21.33 44816026 46507874 RP11-294J22 ANKRD40 231.1491 180.9006 0.3275 0.767237 0.00118 0.251748 0.41043 RMG117 q21.33 44816026 46507874 RP11-121F10|RP11-294J22 ABCC3 577.5176 221.6686 0.3516 0.717135 0.003413 0.06993 0.80873 RMG117 q21.33 44816026 46507874 RP11-94C24|RP11-121F10 SPATA20 710.1657 512.4843 0.3752 0.163423 0.310404 0.328671 0.281431 RMG117 q21.33 44816026 46507874 RP11-93L18 TMEM92 8.8861 18.2452 0.0881 -0.103525 0.377637 -0.454545 0.147205 RMG117 q21.33 44816026 46507874 RP11-140N23 SPAG9 185.4727 177.2981 0.9063 0.551393 0.031362 0.118881 0.691523 RMG117 q21.33 44816026 46507874 RP11-95M07|RP11-799F22|RP11-179G12|CTD-2023F04 MYST2 38.0482 23.2318 0.0763 0.88703 0.000012 0.601399 0.038651 RMG117 q21.33 44816026 46507874 RP11-329H07 HILS1 5.6498 10.9345 0.0663 -0.389041 0.108973 -0.342657 0.286691 RMG117 q21.33 44816026 46507874 RP11-797N21|RP11-94C24 RSAD1 289.6785 155.8246 0.0127 0.809846 0.000363 0.657343 0.021288 RMG117 q21.33 44816026 46507874 RP11-131M15|RP11-714H24|RP11-329H07 SGCA 3.5165 7.5391 0.3782 -0.12925 0.348294 -0.182457 0.58826 RMG117 q21.33 44816026 46507874 RP11-131M15|RP11-714H24|RP11-329H07 PDK2 43.9201 23.6758 0.1766 0.845233 0.000101 0.328671 0.281431 RMG117 q21.33 44816026 46507874 CTD-2023F04|RP11-699K15|RP11-533E14|RP11-131M15|RP11-714H24 DLX3 59.228 32.6225 0.6022 0.004056 0.495146 -0.105636 0.766288 RMG117 q21.33 44816026 46507874 RP11-131M15|RP11-714H24|RP11-329H07 PPP1R9B 14.0136 16.3159 0.6489 -0.033258 0.460248 -0.216783 0.513513 RMG117 q21.33 44816026 46507874 RP11-95M07 LOC81558 24.1847 9.8643 0.2165 0.731012 0.002613 0.554389 0.060871 RMG117 q21.33 44816026 46507874 RP11-95M07|RP11-342J16 SLC35B1 2473.1804 1642.0036 0.1308 0.897375 0.000006 0.398601 0.188518 RMG117 q21.33 44816026 46507874 RP11-93L18|RP11-510P01|RP11-797N21 EME1 109.2189 60.647 0.0714 0.58013 0.023407 0.559441 0.057238 RMG117 q21.33 44816026 46507874 RP11-510P01|RP11-797N21|RP11-94C24 FLJ20920 121.2784 59.8183 0.4521 0.855008 0.000066 0.34965 0.251105 RMG117 q21.33 44816026 46507874 RP11-533E14|RP11-131M15|RP11-714H24|RP11-329H07 ITGA3 1803.2211 1090.5156 0.2977 0.750377 0.001742 0.370629 0.222886 RMG117 q21.33 44816026 46507874 RP11-93L18|RP11-510P01|RP11-797N21 LRRC59 87.527 64.3252 0.2764 0.69281 0.005233 0.587413 0.044262 RMG117 q21.33 44816026 46507874 RP11-93L18|RP11-510P01|RP11-797N21 MRPL27 512.9228 410.6309 0.0856 0.568585 0.026416 0.657343 0.021288 RMG117 q21.33 44816026 46507874 RP11-93L18|RP11-510P01|RP11-797N21 XYLT2 1179.3534 881.5271 0.2849 0.83773 0.000136 0.307692 0.313863 RMG117 q21.33 44816026 46507874 RP11-472H05|RP11-424K16 PHB 2274.5132 2153.5916 0.6853 0.315653 0.163436 0.223776 0.463978 RMG117 q21.33 44816026 46507874 RP11-329H07 COL1A1 158.6851 62.8638 0.5503 -0.019031 0.477233 -0.013986 0.99123 RMG117 q21.33 44816026 46507874 RP11-424K16 NXPH3 3.8514 8.7306 0.5086 -0.063185 0.42473 0.161405 0.595973 RMG1

17 q21.33-q22 46753627 48665701 RP11-368A16|CTD-2230H09|CTD-2170E06|RP11-653N08|RP11-2M19|RP11-795H15|RP11-42D13|RP11-293B16 CA10 7.7303 12.4421 0.3029 0.4773 0.059564 -0.272727 0.403977 RMG117 q22 49838155 53971269 RP11-102J06|RP11-689G20 CUEDC1 1345.3277 768.047 0.1013 0.657863 0.008964 0.671329 0.018053 RMG117 q22 49838155 53971269 RP11-659P18|RP11-468D03 DGKE 35.9927 15.3872 0.2873 0.91769 0.000001 0.356643 0.241464 RMG117 q22 49838155 53971269 RP11-468D03|RP11-14N16 SCPEP1 712.1153 251.8969 0.3758 0.904557 0.000004 0.27972 0.360342 RMG117 q22 49838155 53971269 RP11-16A07 AKAP1 38.7402 21.1701 0.0515 0.829857 0.000183 0.783217 0.003384 RMG117 q22 49838155 53971269 RP11-760B22|RP11-629B03|RP11-695B13|RP11-559D16|RP11-195M24|RP11-421B20|RP11-13H16 MSI2 170.8116 50.7225 0.1858 0.954239 0 0.657343 0.021288 RMG117 q22 49838155 53971269 RP11-102J06|RP11-689G20 MRPS23 964.6707 598.0914 0.101 0.825847 0.000212 0.734266 0.007754 RMG117 q22 49838155 53971269 RP11-468D03|RP11-14N16 COIL 742.8773 500.3626 0.356 0.893141 0.000008 0.454545 0.130628 RMG117 q22 49838155 53971269 RP11-689G20 ZNF161 965.9316 685.3087 0.0823 0.911245 0.000002 0.741259 0.006967 RMG117 q22 49838155 53971269 RP11-159D12 SFRS1 4860.3883 4560.5642 0.5095 0.226387 0.244741 0.377622 0.213947 RMG117 q22 49838155 53971269 RP11-159D12|RP11-575P09|CTD-2023J07|RP11-432F21 DYNLL2 737.9887 615.4219 0.4129 0.668263 0.007701 0.517483 0.081571 RMG117 q22 49838155 53971269 RP11-575P09|CTD-2023J07|RP11-432F21 MKS1 13.7037 4.8127 0.0375 0.235464 0.235794 0.685315 0.015198 RMG117 q22 49838155 53971269 RP11-620A23 MPO 3.0793 1.3753 0.6174 0.868607 0.000034 0.413315 0.17271 RMG117 q22 49838155 53971269 RP11-620A23|RP11-155E20 RNF43 27.0791 5.6708 0.4629 0.072097 0.414234 -0.181278 0.603728 RMG117 q22 49838155 53971269 RP11-155E20 MTMR4 664.1696 518.7687 0.3624 0.862735 0.000046 0.426573 0.157803 RMG117 q22 49838155 53971269 RP11-272A10 PCTP 95.3235 32.7408 0.0463 0.884139 0.000014 0.741259 0.006967 RMG117 q22 49838155 53971269 RP11-430E18|RP11-112J09|RP11-473G17 NOG 4.2217 8.8322 0.1851 -0.275431 0.198165 -0.659653 0.025912 RMG117 q22 49838155 53971269 RP11-620A23 SUPT4H1 398.0723 325.08 0.0798 0.253917 0.218053 0.748252 0.00624 RMG117 q22 49838155 53971269 RP11-1030O14|RP11-651N03|RP11-564P24 COX11 108.9315 56.1871 0.2807 0.810016 0.000361 0.293706 0.336644 RMG117 q22 49838155 53971269 RP11-468D03 TRIM25 50.833 33.9369 0.1884 0.821419 0.000248 0.545455 0.064668 RMG117 q22 49838155 53971269 RP11-456C20 MMD 653.1718 425.937 0.6681 0.853743 0.00007 0.167832 0.580588 RMG117 q22 49838155 53971269 RP11-1030O14|RP11-651N03|RP11-564P24|RP11-354A05|RP11-767L04|RP11-456C20 STXBP4 41.9498 25.7391 0.1433 0.665584 0.008013 0.524476 0.07708 RMG117 q22 49838155 53971269 RP11-1030O14|RP11-651N03|RP11-564P24 TOM1L1 77.3395 57.98 0.5658 0.893512 0.000008 0.230769 0.450277 RMG117 q22 49838155 53971269 RP11-456C20 HLF 94.3113 6.1287 0.4339 0.908123 0.000003 0.392985 0.196764 RMG117 q23.1-q23.2 55503143 56144554 RP11-767P09 CA4 7.0619 7.2738 0.9594 0.25638 0.215732 -0.20979 0.5281 SMOV217 q23.1-q23.2 55503143 56144554 RP11-634F05 BCAS3 8.7701 3.5396 0.191 0.212102 0.259103 0.387334 0.20524 SMOV217 q23.1-q23.2 55503143 56144554 RP11-738N12|RP11-634F05 PPM1D 297.4662 180.4771 0.0364 0.679072 0.006529 0.58042 0.047281 SMOV217 q23.1-q23.2 55503143 56144554 RP11-767P09|RP11-381A05|RP11-651H20 USP32 20.5949 13.0473 0.2372 0.649433 0.010091 0.573427 0.050447 SMOV217 q23.1-q23.2 55503143 56144554 RP11-767P09 ABC1 206.2576 99.1486 0.1202 0.648918 0.010163 0.874126 0.00014 SMOV217 q23.1-q23.2 55503143 56144554 RP11-651H20|RP11-738N12 APPBP2 20.7671 12.6383 0.3283 0.823733 0.000228 0.272727 0.372531 SMOV219 q12 33507712 36602072 RP11-354B17|RP11-17N20|RP11-652C23 C19ORF2 3546.0705 2224.0712 0.0395 0.861568 0.000049 0.734266 0.007754 OVAS19 q12 33507712 36602072 RP11-35J02|RP11-272C23 POP4 1587.2429 1043.863 0.1674 0.773032 0.001023 0.454545 0.130628 OVAS19 q12 33507712 36602072 RP11-173H24 UQCRFS1 6300.3072 3608.254 0.0597 0.924323 0.000001 0.629371 0.02902 OVAS19 q12 33507712 36602072 RP11-272C23 PLEKHF1 379.2875 201.9259 0.1438 0.6089 0.016939 0.699301 0.01269 OVAS19 q12 33507712 36602072 RP11-354B17|RP11-17N20|RP11-652C23 C19ORF12 445.7022 180.9905 0.0204 0.943864 0 0.727273 0.008603 OVAS19 q12 33507712 36602072 RP11-372I05|RP11-104J24|CTD-2057D4 CCNE1 389.0349 181.9176 0.1274 0.489157 0.054263 0.461538 0.12437 OVAS19 q13.12-q13.13 42450909 43182219 RP11-424G09|RP11-587I09 ZNF607 21.6809 9.3278 0.1129 0.842151 0.000114 0.664336 0.019621 OVISE19 q13.12-q13.13 42450909 43182219 RP13-515N07|RP11-63E20|CTD-2232M6|RP11-83J10|RP11-233L17 ZNF569 243.8658 199.771 0.509 0.566241 0.027057 0.258741 0.397577 OVISE19 q13.12-q13.13 42450909 43182219 RP13-515N07|RP11-63E20|RP11-83J10|RP11-233L17 ZNF570 36.8888 21.4281 0.1 0.807712 0.000388 0.594406 0.041387 OVISE19 q13.12-q13.13 42450909 43182219 RP11-83J10 LOC390927 15.6653 5.605 0.0096 0.652523 0.009667 0.512284 0.086244 OVISE19 q13.12-q13.13 42450909 43182219 RP11-587I09 ZNF573 203.3715 78.0115 0.0884 0.821579 0.000246 0.426573 0.157803 OVISE19 q13.12-q13.13 42450909 43182219 RP11-587I09|RP11-317L23 SIPA1L3 55.4741 45.0967 0.0468 0.630577 0.01297 0.706294 0.011558 OVISE19 q13.12-q13.13 42450909 43182219 RP13-515N07|RP11-63E20|CTD-2232M6 HKR1 54.3799 27.65 0.0926 0.889762 0.00001 0.636364 0.026919 OVISE19 q13.2 44635540 45391137 RP11-268C04|CTD-2019O11 LGALS14 22.1341 1.4347 0.1752 0.276629 0.197084 0.282794 0.360342 OVISE19 q13.2 44635540 45391137 RP11-154E19|RP11-808D17 PSMC4 1104.0261 593.2772 0.0247 0.874336 0.000025 0.496503 0.096154 OVISE19 q13.2 44635540 45391137 RP11-808D17 MAP3K10 47.4226 32.4227 0.1812 0.509165 0.046013 0.412587 0.17271 OVISE19 q13.2 44635540 45391137 CTD-2019O11|RP11-261B03 DYRK1B 10.7707 21.406 0.1815 -0.353424 0.133919 -0.048951 0.903739 OVISE19 q13.2 44635540 45391137 CTD-2019O11|RP11-261B03 FBL 4054.2982 2452.8417 0.02 0.768387 0.001147 0.370629 0.222886 OVISE19 q13.2 44635540 45391137 RP11-104I17 CRI2 575.5951 313.2075 0.1104 0.750495 0.001737 0.629371 0.02902 OVISE19 q13.2 44635540 45391137 RP11-104I17 EID-3 99.8156 75.9635 0.4599 0.601665 0.018433 0.258741 0.397577 OVISE19 q13.2 44635540 45391137 RP11-739P03|RP11-104I17 DLL3 333.5322 252.1623 0.3467 0.645056 0.010714 0.153846 0.611522 OVISE19 q13.2 44635540 45391137 RP11-739P03 SUPT5H 1159.5021 681.1589 0.0309 0.859144 0.000055 0.314685 0.30282 OVISE20 q12 39114015 39677527 CTD-2033J20|RP11-415L20 EMILIN3 5.7657 1.2184 0.2124 0.567059 0.026832 0.210283 0.491988 OVISE20 q12 39114015 39677527 CTD-2033J20|RP11-415L20|RP11-469I22 CHD6 37.617 32.9915 0.5537 0.546736 0.032801 0.174825 0.565371 OVISE20 q12 39114015 39677527 CTD-2033J20|RP11-415L20 LPIN3 128.2871 83.5522 0.5681 0.657249 0.009043 0.286713 0.348379 OVISE20 q12 39114015 39677527 RP11-126O24|RP11-117L20|CTD-2033J20 ZHX3 306.803 202.9662 0.2755 0.597857 0.019254 0.377622 0.213947 OVISE20 q12 39114015 39677527 RP11-126O24|RP11-117L20 TOP1 59.9613 47.9224 0.4391 0.442338 0.07702 0.412587 0.17271 OVISE20 q12 39114015 39677527 RP11-126O24|RP11-117L20 PLCG1 688.0002 355.0726 0.0601 0.868543 0.000034 0.811189 0.001869 OVISE20 q13.2 50933934 52024202 RP11-694L10|RP11-20J08 ZNF217 1443.8476 521.588 0.1006 0.850697 0.00008 0.678322 0.01658 SMOV220 q13.2 51819457 5278639 RP11-234K07|RP11-92B18|RP11-114N21 CYP24A1 23.9508 1.5039 0.678 -0.046235 0.444803 0 0.982461 OVISE20 q13.2 51819457 5278639 RP11-234K07|RP11-92B18|RP11-114N21|CTD-2026A11 PFDN4 77.6205 25.5634 0.1598 0.894111 0.000008 0.839161 0.000868 OVISE20 q13.2 51819457 5278639 RP11-55L07|RP11-6L15|RP11-112D03|RP11-302M06|RP11-302M05|RP11-706M02 DOK5 37.494 2.0956 0.2521 0.005756 0.493112 0.413315 0.17271 OVISE20 q13.31 54989120 55264472 RP11-410P03|RP11-560A15 BMP7 201.3652 283.6704 0.6112 -0.206336 0.264995 -0.077743 0.834447 OVAS20 q13.31-q13.33 55873878 58324500 RP11-290D09|RP11-699F06|RP11-37E05 GNAS 3937.8096 3394.8618 0.403 0.860605 0.000051 0.573427 0.050447 OVAS20 q13.31-q13.33 55873878 58324500 RP11-700P05|CTD-2160P21 PPP1R3D 62.4394 47.9442 0.2576 0.877797 0.000021 0.384615 0.20524 OVAS20 q13.31-q13.33 55873878 58324500 CTD-2033F06 RAB22A 520.0191 303.075 0.276 0.882072 0.000016 0.482517 0.106838 OVAS20 q13.31-q13.33 55873878 58324500 RP11-75M07 VAPB 12.0601 7.5197 0.3336 -0.034185 0.459143 0.062937 0.825856 OVAS20 q13.31-q13.33 55873878 58324500 RP11-75M07 FLJ90166 3.6437 1.5628 0.6581 -0.004652 0.494433 -0.070182 0.851682 OVAS20 q13.31-q13.33 55873878 58324500 RP11-261P09|RP11-290D09 STX16 631.5182 376.1561 0.1184 0.969589 0 0.86014 0.000374 OVAS20 q13.31-q13.33 55873878 58324500 RP11-261P09|RP11-290D09 NPEPL1 228.7945 196.9184 0.808 0.514186 0.044077 0.363636 0.232058 OVAS20 q13.31-q13.33 55873878 58324500 RP11-37E05 TH1L 1431.7941 1328.2926 0.7995 0.698562 0.004751 0.335664 0.271088 OVAS20 q13.31-q13.33 55873878 58324500 RP11-37E05 CTSZ 373.5858 276.813 0.6308 0.804571 0.000428 0.223776 0.463978 OVAS20 q13.31-q13.33 55873878 58324500 RP11-700P05 C20ORF177 589.1544 423.942 0.3102 0.772573 0.001035 0.398601 0.188518 OVAS20 q13.31-q13.33 55873878 58324500 RP11-58B13 C20ORF45 25.6932 24.0879 0.8749 0.771432 0.001065 0.090909 0.757871 OVAS20 q13.31-q13.33 55873878 58324500 RP11-41M17|RP11-164D18|RP11-648D07|RP11-408P24|RP11-694I10|RP11-700P05|CTD-2160P21 PHACTR3 71.7954 1.0721 0.312 0.826422 0.000208 -0.023705 0.973694 OVAS20 q13.31-q13.33 55873878 58324500 RP11-56D21 CDH26 3.4671 5.363 0.1279 -0.213231 0.257956 -0.328671 0.308312 OVAS20 q13.31-q13.33 55873878 58324500 RP11-694I10|RP11-700P05|CTD-2160P21 SYCP2 30.4615 18.9482 0.6344 0.610169 0.016686 0.366206 0.232058 OVAS20 q13.31-q13.33 55873878 58324500 RP11-37E05 ATP5E 13783.0906 11453.1278 0.2844 0.793686 0.000589 0.433566 0.150683 OVAS20 q13.33 62141109 62434349 RP11-134L13|RP11-231C02|RP11-350G15 PCMTD2 239.8614 144.2227 0.2315 0.840319 0.000123 0.370629 0.222886 OVAS20 q13.33 62141109 62434349 RP11-134L13 RGS19 324.7363 265.3321 0.5382 0.759821 0.001407 0.202797 0.50629 OVAS20 q13.33 62141109 62434349 RP11-134L13 TCEA2 152.3686 112.9364 0.4246 0.583399 0.022599 0.251748 0.41043 OVAS20 q13.33 62141109 62434349 RP11-134L13 SOX18 146.2674 39.7795 0.3012 0.822852 0.000236 0.244755 0.4235 OVAS

Page 2

Supplementary Table 9 - Correlation of copy number gains/amplification

and mRNA level for genes within regions of high level amplification.

Mean-Gain = Arithmetic average of Illumina expression values in cell lines

with copy number gain or amplification (aws ratios > 0.12), Mean-No Gain =

Arithmetic average of Illumina expression values in cell lines with no copy

number gain/ amplification (aws ratios 0.12).

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SUPPLEMENTARY METHODSclincancerres.aacrjournals.org/content/suppl/2009/03/13/1078-0432.… · SUPPLEMENTARY METHODS 1) Characterisation of OCCC cell line gene expression profiles