7
0 1 2 3 4 5 6 7 75 85 95 105 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 0.0 0.5 1.0 1.5 Weight (% Starting) Score Lyn +/+ Lyn -/- Time (days) A B Time (days) Length (cm) * Lyn +/+ Lyn -/- Untreated DSS C Weight Change Rectal Bleeding Colon Length Lyn +/+ Lyn -/- D 200 m DSS 4x 10x Lyn -/- Untreated 4x 10x Lyn +/+ 200 m 500 m 500 m 200 m 500 m 500 m 200 m * ** *** *** * Supplemental Figure 1 *** *** Figure S1. Lyn-deficiency increases susceptibility to DSS-induced colitis. Lyn +/+ and Lyn -/- mice were challenged with 2.5% DSS and (A) body weight and (B) rectal bleeding were monitored for 7 days. Mice were sacrificed on day 7, (C) colon length was measured and (D) cross sections of distal colon were stained with hematoxylin and eosin. Representative data from three independent experiments are shown, n=4-9, error bars represent SEM. * = p < 0.05, ** = p < 0.01, *** = p < 0.005 . No differences in weights of untreated Lyn +/+ and Lyn -/- mice were observed (data not shown).

Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

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Page 1: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

0 1 2 3 4 5 6 775

85

95

105

3

4

5

6

7

8

9

0 1 2 3 4 5 6 70.0

0.5

1.0

1.5

Wei

ght (

% S

tarti

ng)

Sco

re

Lyn+/+

Lyn-/-

Time (days)

A B

0 1 2 3 4 5 6 7 880

85

90

95

100

105

Time (days)

Leng

th (c

m)

*

Lyn+/+

Lyn-/-

Untreated DSS

C Weight Change Rectal Bleeding Colon Length

Lyn+/+

Lyn-/-

D

200 m

DSS 4x 10x

Lyn-/-

Untreated 4x 10x

Lyn+/+

200 m 500 m

500 m

200 m 500 m

500 m 200 m

0 1 2 3 4 5 6 7 880

85

90

95

100

105

* ** *** *** *

Supplemental Figure 1

*** ***

Figure S1. Lyn-deficiency increases susceptibility to DSS-induced colitis. Lyn +/+ and Lyn -/- mice were challenged with 2.5% DSS and (A) body weight and (B) rectal bleeding were monitored for 7 days. Mice were sacrificed on day 7, (C) colon length was measured and (D) cross sections of distal colon were stained with hematoxylin and eosin. Representative data from three independent experiments are shown, n=4-9, error bars represent SEM. * = p < 0.05, ** = p < 0.01, *** = p < 0.005 . No differences in weights of untreated Lyn+/+ and Lyn-/- mice were observed (data not shown).

Page 2: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

0 102 103 104 105

<PE-A>: CD4

0

102

103

104

105

<PE-

Cy7

-A>:

CD

8

0 102 103 104 105

<PE-A>: CD4

0

102

103

104

105

<PE-

Cy7

-A>:

CD

8

0 102 103 104 105

<FITC-A>: CD3

0

102

103

104

105

<Pac

ific

Blu

e-A

>: C

D45

0 102 103 104 105

<FITC-A>: CD3

0

102

103

104

105

<Pac

ific

Blu

e-A

>: C

D45

0 102 103 104 105

<PE-A>: CD4Bt

0

102

103

104

105

<PE-

Cy7

-A>:

CD

8

H20

DSS

CD45+ CD45+CD11c+MHCII+ CD45+CD11c+MHCII+

Lyn+/+ Lynup/up A

CD45+

CD11b

CD

103

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

CD11c

MH

C II

20.8 ± 2.4 30.2 ± 4.0

15.4 ± 1.6 25.0 ± 2.0

H20

DSS

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

CD11b

Gr-

1

0.2 ± 0.1

2.6 ± 0.7

0.6 ± 0.1

4.1 ± 0.2

7.4 ± 0.2 7.6 ± 1.2

10.7 ± 0.8 10.5 ± 2.4

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

CD11b

F4/8

0

32.5 ± 1.7 37.8 ± 3.1

16.0 ± 6.0 23.8 ± 7.2

0 102 103 104 105

<FITC-A>: CD3

0

102

103

104

105

<Pac

ific

Blu

e-A

>: C

D45

0 102 103 104 105

<PE-A>: CD4Bt

0

102

103

104

105

<PE-

Cy7

-A>:

CD

8

0 102 103 104 105

<FITC-A>: CD3

0

102

103

104

105

<Pac

ific

Blu

e-A

>: C

D45

CD45+CD3+

CD3

CD

45

CD45+

CD4

CD

8 53.0 ± 4.6 54.2 ± 11.9

16.1 ± 2.2 35.2 ± 3.0

17.5 ± 3.3 29.4 ± 4.5

21.9 ± 1.0 24.3 ± 2.5

56.0 ± 3.6 62.3 ± 4.4

22.5 ± 5.7 26.5± 6.7

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

36.1 ± 5.9 38.9 ± 7.3

44.9 ± 8.6 45.7 ± 10.0

26.8 ± 3.8 26.5 ± 1.4

44.8 ± 4.4 50.9 ± 5.0

7.8 ± 0.9 10.2 ± 1.3

4.7 ± 0.3 6.8 ± 0.3

0 102 103 104 105

<APC-A>: B220

0

102

103

104

105

<FIT

C-A

>: C

D19

0 102 103 104 105

<APC-A>: B220

0

102

103

104

105

<FIT

C-A

>: C

D19

0 102 103 104 105

<APC-A>: B220

0

102

103

104

105

<FIT

C-A

>: C

D19

0 102 103 104 105

<APC-A>: B220

0

102

103

104

105

<FIT

C-A

>: C

D19

B220

CD

19

13.4 ± 2.7 1.0 ± 0.8

12.6 ± 1.9 0.7 ± 0.3

CD45+

H20

DSS

0 102 103 104 105

<PE-A>: CD80

0

20

40

60

80

100

% o

f Max

0 102 103 104 105

<FITC-A>: CD86

0

20

40

60

80

100

% o

f Max

CD80 CD86

Lyn+/+

Lynup/up

0 102 103 104 105

<PE-A>: CD80

0

20

40

60

80

100

% o

f Max

0 102 103 104 105

<FITC-A>: CD86

0

20

40

60

80

100

% o

f Max

CD45+

010203050

200350500650800950

B

Num

ber (

x103

)

Total Numbers

Lyn+/+

Lynup/up

Supplemental Figure 2

Lyn+/+ Lynup/up

Lyn+/+ Lynup/up

Page 3: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

Figure S2. The intestinal immune compartment of Lyn up/up mice. Lyn +/+ and Lyn up/up mice were left untreated (H2O) or were challenged with 2.5% DSS for 7 days (DSS). Colonic lamina propria cells were isolated and analyzed for the presence of macrophages (CD11b+F4/80+), granulocytes (Gr-1+CD11b+), DCs (CD11c+MHCII+, CD103+/CD11b+, CD80 and CD86), T cells (CD3+, CD4+/CD8+), and B cells (CD19+B220+) by flow cytometry. For CD80 and CD86 expression, shaded histograms represent CD11c-MHCII- cells. Lyn +/+ (grey) and Lyn up/up (black) DCs (CD11c+MHCII+) are represented by open histograms. All cells were first gated on live (propidium iodide negative) CD45+ populations. (A) Representative plots from 3 independent experiments are shown. Numbers represent pooled mean frequency ± SEM, n=6. (B) Graphs indicate total numbers of indicated cell populations per colon. Data is pooled from from 3 experiments, n=6, and error bars represent SEM.

Page 4: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

CD45+ CD45+ CD45+ Rag-/- Rag-/-Lynup/up

H20

DSS

CD11c

MH

C II

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

64.3 ± 2.3 61.6 ± 3.6

64.0 ± 0.7 58.7 ± 0.9

CD11b

Gr-

1

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

7.5 ± 0.8

0.6 ± 0.2

10.0 ± 1.1

1.5 ± 0.1

22.7 ± 0.9

5.2 ± 1.5

14.5 ± 1.7

8.7 ± 2.8

CD11b

F4/8

0

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

10552.0 ± 2.6 39.3 ± 7.8

55.6 ± 3.5 60.2 ± 2.3

Supplemental Figure 3

Rag-/- Rag-/-Lynup/up Rag-/- Rag-/-Lynup/up

Figure S3. The intestinal immune compartment of Rag-/-Lyn up/up mice. Rag-/- and Rag-/-Lyn up/up mice were left untreated (H2O) or were challenged with 2.5% DSS for 7 days (DSS). Colonic lamina propria cells were isolated and analyzed for the presence of macrophages (CD11b+F4/80+), granulocytes (Gr-1+CD11b+), and DCs (CD11c+MHC II+). All cells were first gated on live (propidium iodide negative) CD45+ populations. Representative plots from 2-3 independent experiments are shown. Numbers represent pooled mean frequency ± SEM, n=4-6.

Page 5: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

Supplemental Figure 4

Unstim.

IL-23 + LPS

CD45+IL-22+Lin-CD90+ CD45+

IL-22

CD

90

CD45+IL-22+CD90+

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

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0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

MFI 493

0 102 103 104 105

<PE-A>: IL-22

0

102

103

104

105

<APC

-A>:

CD

90

MFI 620 59.2 ± 5.3 72.1 ± 6.6

67.8 ± 7.9 69.1 ± 11.1

0 102 103 104 105

0

102

103

104

105

MFI 1204

0 102 103 104 105

<PE-A>: IL-22

0

102

103

104

105

<APC

-A>:

CD

90

MFI 1713 85.3 ± 1.3 89.2 ± 1.8

69.5 ± 1.6 68.7 ± 1.2

CD90

Line

age

CD25

CD

4

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

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105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

0

102

103

104

105

MFI 1006

MFI 1349 82.4 ± 1.9 86.9 ± 1.7

70.5 ± 1.5 70.0 ± 2.0

IL-23

Rag-/- Rag-/-Lynup/up Rag-/- Rag-/-Lynup/up Rag-/- Rag-/-Lynup/up

Figure S4. Lyn regulates IL-22 production from ILCs, the major source of IL-22 in splenic cultures. Splenocytes from naïve Rag-/- and Rag-/-Lyn up/up mice were treated with brefeldin A alone (Unstim.) or brefeldin A and IL-23 ± LPS for 8 hours and IL-22 production was assessed by flow cytometry. Plots represent data pooled from 2 independent experiments, n=4. Numbers on plots represent pooled mean frequency ± SEM or representative mean fluorescence intensities (MFI).

Page 6: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

Supplemental Figure 5

0 102 103 104 105

0

102

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0 102 103 104 105

0

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104

105

0 102 103 104 105

0

102

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105

0 102 103 104 105

0

102

103

104

105

0 102 103 104 105

<APC-A>: CD11c

0

102

103

104

105

<PE-

A>: C

L2

0 102 103 104 105

<APC-A>: CD11c

0

102

103

104

105

<PE-

A>: C

L2

0 102 103 104 105

<APC-A>: CD11c

0

102

103

104

105

<PE-

A>: C

L2

0 102 103 104 105

<APC-A>: CD11c

0

102

103

104

105

<PE-

A>: C

L2

33.8 1.7 11.0 19.1

1.5 0.1 0.4 0.5

CD11c

MH

C II

PBS 2 Days 3 Days 4 Days

Spleen

cLP

B

C

0 102 103 104 105

<APC-A>: CD90

0

102

103

104

105

<PE

-A>:

Lin

eage

0 102 103 104 105

<APC-A>: CD90

0

102

103

104

105

<PE

-A>:

Lin

eage

0 102 103 104 105

<PE-Cy7-A>: CD11c

0

102

103

104

105

<APC

-Cy7

-A>:

MH

C II

0 102 103 104 105

<PE-Cy7-A>: CD11c

0

102

103

104

105

<APC

-Cy7

-A>:

MH

C II

0 102 103 104 105

<FITC-A>: CD11c-GFP

0

102

103

104

105

<APC

-Cy7

-A>:

MH

C II

0 102 103 104 105

<FITC-A>: CD11c-GFP

0

102

103

104

105

<APC

-Cy7

-A>:

MH

C II

0 102 103 104 105

<APC-A>: CD90

0

102

103

104

105

<PE

-A>:

Lie

nage

0 102 103 104 105

<APC-A>: CD90

0

102

103

104

105

<PE

-A>:

Lie

nage

0 102 103 104 105

<PE-Cy7-A>: CD11c

0

102

103

104

105

<APC

-Cy7

-A>:

MH

C II

0 102 103 104 105

<PE-Cy7-A>: CD11c

0

102

103

104

105

<APC

-Cy7

-A>:

MH

C II

0 102 103 104 105

<APC-A>: CD90

0

102

103

104

105

<PE

-A>:

Lin

eage

0 102 103 104 105

<APC-A>: CD90

0

102

103

104

105

<PE

-A>:

Lin

eage

PBS

CD45+ DT

Spleen MLN cLP PBS DT PBS DT

CD90

Line

age

CD11c

MH

C II

1.2 0.1

0.3 0.4

1.6 0.1

0.3 1.6

8.2 1.3

2.2 2.8

CD90

Line

age

0 102 103 104 105

R1-A: CD90 - APC-A

0

102

103

104

105

B1-A

: Lin

eage

- FI

TC-A

0 102 103 104 105

R1-A: CD90 - APC-A

0

102

103

104

105

B1-A

: Lin

eage

- FI

TC-A

12.8 0.0 0 102 103 104 105

R1-A: CD90 - APC-A

0

102

103

104

105

B1-A

: Lin

eage

- FI

TC-A

0 102 103 104 105

R1-A: CD90 - APC-A

0

102

103

104

105

B1-A

: Lin

eage

- FI

TC-A

25.5 0.0 0 102 103 104 105

R1-A: CD90 - APC-A

0

102

103

104

105

B1-A

: Lin

eage

- FI

TC-A

0 102 103 104 105

R1-A: CD90 - APC-A

0

102

103

104

105

B1-A

: Lin

eage

- FI

TC-A

22.2 6.8

A PBS

CD45+ anti-CD90

Spleen MLN cLP

PBS anti-CD90 PBS anti-CD90

Figure S5. Systemic administration of monoclonal anti-CD90 antibodies or DT depletes CD90+ cells and DCs, respectively. (A) Rag -/- and Rag-/-Lyn up/up mice were mock injected (PBS) or treated with anti-CD90 mAb. Two days later mice were injected with LPS and presence of CD90+ cells in the spleen, mesenteric lymph nodes (MLN) and colonic lamina propria (cLP) was assessed by flow cytometry 2 hours post-LPS injection. (B) Cd11cDTR mice were injected with PBS or diptheria toxin (DT) and the presence of DCs (CD11c+MHC II+) in the cLP and spleen was assessed by flow cytometry at the indicated time points post-DT injection. (C) Cd11cDTR and Cd11cDTR-Lynup/up mice were mock injected (PBS) or treated with DT 1 day prior to LPS injection and presence of DCs (CD11c+MHC II+) and ILCs (lineage-CD90+) cells in the spleen, MLN and cLP was assessed by flow cytometry. All cells were first gated on live (propidium iodide negative) CD45+ populations. Representative plots are shown and numbers represent frequency of highlighted population.

Page 7: Supplemental Figure 1 - Nature ResearchSupplemental Figure 2 Lyn Lynup/up Lyn+/+ up/up Figure S2. The intestinal +/+immune upcompartment of Lynup/up mice. Lyn and Lyn /up mice were

100 101 102 103 104

PE-A: Lyn PE-A

0

20

40

60

80

100%

of M

ax

100 101 102 103 104

APC-A: Lyn APC-A

0

20

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60

80

100

% o

f Max

100 101 102 103 104

PE-A: Lyn PE-A

0

20

40

60

80

100

% o

f Max

100 101 102 103 104

PE-A: Lyn PE-A

0

20

40

60

80

100

% o

f Max

T Cells (TCR +)

Macrophages (CD11b+F4/80hi)

Neutrophils (CD11b+Gr-1hi)

NK Cells (NK1.1+DX5+)

Lyn+/+

Lyn-/-

Lyn 100 101 102 103 104

PE-A: Lyn PE-A

0

20

40

60

80

100

% o

f Max

(CD45-)

Supplemental Figure 6

Figure S6. Colonic expression of Lyn. Colonic lamina propria cells were isolated from naïve Lyn +/+ (black open histograms) and Lyn -/- (grey filled histograms) mice and Lyn expression in conventional T cells (TCR +), macrophages (CD11b+F4/80hi), neutrophils (CD11b+Gr-1hi), NK cells (NK1.1+DX5+) and non-hematopoietic cells (CD45-) was assessed by flow cytometry. All cells were first gated on live CD45+ populations, with the exception of CD45- cells which were gated on live CD45- cells. Representative histograms are shown.